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Conserved domains on  [gi|72385286|gb|AAZ67901|]
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cytochrome b, partial (mitochondrion) [Ephippiger ephippiger]

Protein Classification

cytochrome b( domain architecture ID 999997)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) that is part of the mitochondrial respiratory chain; contributes to the generation of a proton gradient across the mitochondrial membrane that is then used for ATP synthesis

CATH:  1.20.810.10
Gene Symbol:  CYTB
Gene Ontology:  GO:0009055|GO:0046872|GO:0022904|GO:0005743|GO:0020037
PubMed:  2509716|8329437
SCOP:  4002208

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB super family cl33360
cytochrome b; Provisional
 1-142 5.24e-99

cytochrome b; Provisional


The actual alignment was detected with superfamily member MTH00156:

Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 288.22  E-value: 5.24e-99
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72385286    1 LSAIPYLGTDLVQWVWGGFAVDNATLTRFFTFHFVLPFIVSAVVMVHLLFLHQTGSNNPLGLNSDSDKIPFHPYFSFKDI 80
Cdd:MTH00156 140 LSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDL 219

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 72385286   81 FGFIILLSSLLLLTLLEPYMLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGV 142
Cdd:MTH00156 220 VGFIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGV 281
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 1-142 5.24e-99

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 288.22  E-value: 5.24e-99
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72385286    1 LSAIPYLGTDLVQWVWGGFAVDNATLTRFFTFHFVLPFIVSAVVMVHLLFLHQTGSNNPLGLNSDSDKIPFHPYFSFKDI 80
Cdd:MTH00156 140 LSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDL 219

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 72385286   81 FGFIILLSSLLLLTLLEPYMLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGV 142
Cdd:MTH00156 220 VGFIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGV 281
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-142 8.54e-45

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 150.33  E-value: 8.54e-45
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72385286   1 LSAIPYLGTDLVQWVWGGFAVDNATLTRFFTFH-FVLPFIVSAVVMVHLLFLHQTGSNNPLG----LNSDSDKIPFHPYF 75
Cdd:COG1290 161 FGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYY 240

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 72385286  76 SFKDIFGFIILLSSLLLLTLLEPymLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIP--NKLGGV 142
Cdd:COG1290 241 TVKDGFGFFVFLGVFALLAFFFP--INPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGV 307
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 58-142 1.19e-31

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 110.04  E-value: 1.19e-31
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72385286  58 NPLGLNSDSDKIPFHPYFSFKDIFGFIILLSSLLLLTLLEPYMLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPN 137
Cdd:cd00290   1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80


                ....*
gi 72385286 138 KLGGV 142
Cdd:cd00290  81 KLLGV 85
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
1-104 5.86e-24

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 90.76  E-value: 5.86e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72385286     1 LSAIPYLGTDLVQWVWGGFAVDNATLTRFFTFHF-VLPFIVSAVVMVHLLFLHQTGSNNPLGLNSDSDKIPFHPYFSFKD 79
Cdd:pfam13631  65 LSSIPVVGTWLVWLLFGGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKM 144

                          90       100
                  ....*....|....*....|....*
gi 72385286    80 IFGFIILLSSLLLLTLLEPYMLGDP 104
Cdd:pfam13631 145 LLFFLITVALLIGLAQINPIWLGGP 169
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 97-142 6.03e-08

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 48.64  E-value: 6.03e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 72385286    97 EPYMLGDPdnfipANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGV 142
Cdd:TIGR01156  58 DPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGV 98
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 1-142 5.24e-99

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 288.22  E-value: 5.24e-99
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72385286    1 LSAIPYLGTDLVQWVWGGFAVDNATLTRFFTFHFVLPFIVSAVVMVHLLFLHQTGSNNPLGLNSDSDKIPFHPYFSFKDI 80
Cdd:MTH00156 140 LSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDL 219

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 72385286   81 FGFIILLSSLLLLTLLEPYMLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGV 142
Cdd:MTH00156 220 VGFIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGV 281
CYTB MTH00131
cytochrome b; Provisional
 1-142 1.31e-87

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 259.97  E-value: 1.31e-87
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72385286    1 LSAIPYLGTDLVQWVWGGFAVDNATLTRFFTFHFVLPFIVSAVVMVHLLFLHQTGSNNPLGLNSDSDKIPFHPYFSFKDI 80
Cdd:MTH00131 150 LSAVPYVGNTLVQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDL 229

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 72385286   81 FGFIILLSSLLLLTLLEPYMLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGV 142
Cdd:MTH00131 230 LGFAILLLALTSLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGV 291
CYTB MTH00191
cytochrome b; Provisional
 1-142 3.09e-87

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 258.31  E-value: 3.09e-87
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72385286    1 LSAIPYLGTDLVQWVWGGFAVDNATLTRFFTFHFVLPFIVSAVVMVHLLFLHQTGSNNPLGLNSDSDKIPFHPYFSFKDI 80
Cdd:MTH00191 147 LSAIPYIGDDLVQWLWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDI 226

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 72385286   81 FGFIILLSSLLLLTLLEPYMLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGV 142
Cdd:MTH00191 227 LGFFILLFLLLFLVLFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGV 288
CYTB MTH00100
cytochrome b; Provisional
 1-142 3.43e-87

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 258.80  E-value: 3.43e-87
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72385286    1 LSAIPYLGTDLVQWVWGGFAVDNATLTRFFTFHFVLPFIVSAVVMVHLLFLHQTGSNNPLGLNSDSDKIPFHPYFSFKDI 80
Cdd:MTH00100 150 LSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDI 229

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 72385286   81 FGFIILLSSLLLLTLLEPYMLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGV 142
Cdd:MTH00100 230 LGLLLLILTLMLLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGV 291
CYTB MTH00119
cytochrome b; Provisional
 1-142 5.22e-87

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 258.29  E-value: 5.22e-87
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72385286    1 LSAIPYLGTDLVQWVWGGFAVDNATLTRFFTFHFVLPFIVSAVVMVHLLFLHQTGSNNPLGLNSDSDKIPFHPYFSFKDI 80
Cdd:MTH00119 151 LSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDL 230

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 72385286   81 FGFIILLSSLLLLTLLEPYMLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGV 142
Cdd:MTH00119 231 LGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGV 292
CYTB MTH00074
cytochrome b; Provisional
 1-142 3.61e-85

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 253.84  E-value: 3.61e-85
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72385286    1 LSAIPYLGTDLVQWVWGGFAVDNATLTRFFTFHFVLPFIVSAVVMVHLLFLHQTGSNNPLGLNSDSDKIPFHPYFSFKDI 80
Cdd:MTH00074 151 LSAIPYMGDTLVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDL 230

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 72385286   81 FGFIILLSSLLLLTLLEPYMLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGV 142
Cdd:MTH00074 231 LGFLIMLTALALLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGV 292
CYTB MTH00145
cytochrome b; Provisional
 1-142 7.53e-85

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 252.90  E-value: 7.53e-85
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72385286    1 LSAIPYLGTDLVQWVWGGFAVDNATLTRFFTFHFVLPFIVSAVVMVHLLFLHQTGSNNPLGLNSDSDKIPFHPYFSFKDI 80
Cdd:MTH00145 151 LSAIPYVGKMLVEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDL 230

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 72385286   81 FGFIILLSSLLLLTLLEPYMLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGV 142
Cdd:MTH00145 231 VGFVVLLFLLVFLVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGV 292
CYTB MTH00016
cytochrome b; Validated
 1-142 1.55e-83

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 249.59  E-value: 1.55e-83
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72385286    1 LSAIPYLGTDLVQWVWGGFAVDNATLTRFFTFHFVLPFIVSAVVMVHLLFLHQTGSNNPLGLNSDSDKIPFHPYFSFKDI 80
Cdd:MTH00016 151 LSAIPYIGKMLVQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDI 230

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 72385286   81 FGFIILLSSLLLLTLLEPYMLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGV 142
Cdd:MTH00016 231 VGFIVMLFLLLSVVLLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGV 292
CYTB MTH00034
cytochrome b; Validated
 1-142 2.69e-78

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 236.14  E-value: 2.69e-78
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72385286    1 LSAIPYLGTDLVQWVWGGFAVDNATLTRFFTFHFVLPFIVSAVVMVHLLFLHQTGSNNPLGLNSDSDKIPFHPYFSFKDI 80
Cdd:MTH00034 150 VSAVPYIGTDIVQWIWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDL 229

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 72385286   81 FGFIILLSSLLLLTLLEPYMLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGV 142
Cdd:MTH00034 230 VGFLILFAALSSLALLFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGV 291
CYTB MTH00224
cytochrome b; Provisional
 1-142 1.13e-68

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 211.70  E-value: 1.13e-68
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72385286    1 LSAIPYLGTDLVQWVWGGFAVDNATLTRFFTFHFVLPFIVSAVVMVHLLFLHQTGSNNPLGLNSDSDKIPFHPYFSFKDI 80
Cdd:MTH00224 151 FSAIPYIGKDLVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDA 230

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 72385286   81 FGFIILLSSLLLLTLLEPYMLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGV 142
Cdd:MTH00224 231 LGYLIAILLLSLMVLFEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGV 292
CYTB MTH00022
cytochrome b; Validated
 1-142 1.01e-66

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 206.48  E-value: 1.01e-66
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72385286    1 LSAIPYLGTDLVQWVWGGFAVDNATLTRFFTFHFVLPFIVSAVVMVHLLFLHQTGSNNPLGLNSDSDKIPFHPYFSFKDI 80
Cdd:MTH00022 149 LSAIPYVGTDIVQWVWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDW 228

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 72385286   81 FGFIILLSSLLLLTLLEPYMLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGV 142
Cdd:MTH00022 229 YGIVVLFFLLSFIVYFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGV 290
CYTB MTH00053
cytochrome b; Provisional
 1-142 6.57e-66

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 204.55  E-value: 6.57e-66
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72385286    1 LSAIPYLGTDLVQWVWGGFAVDNATLTRFFTFHFVLPFIVSAVVMVHLLFLHQTGSNNPLGLNSDSDKIPFHPYFSFKDI 80
Cdd:MTH00053 151 LSAIPYVGDDIVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDL 230

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 72385286   81 FGFIILLSSLLLLTLLEPYMLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGV 142
Cdd:MTH00053 231 YGAVILLIILSIIVFLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGV 292
CYTB MTH00086
cytochrome b; Provisional
 1-142 3.12e-52

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 168.58  E-value: 3.12e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72385286    1 LSAIPYLGTDLVQWVWGGFAVDNATLTRFFTFHFVLPFIVSAVVMVHLLFLHQTGSNNPLGLNSDSDKIPFHPYFSFKDI 80
Cdd:MTH00086 139 LSVIPIWGPSIVMWIWGGFGVSSATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDA 218

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 72385286   81 FGFIILLSSLLLLTLLePYMLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGV 142
Cdd:MTH00086 219 YNIIFWLVFIIFSLFY-PFNLGDPEMFIEADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGV 279
CYTB MTH00033
cytochrome b; Provisional
 1-142 7.85e-50

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 163.19  E-value: 7.85e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72385286    1 LSAIPYLGTDLVQWVWGGFAVDNATLTRFFTFHFVLPFIVSAVVMVHLLFLHQTGSNNPLGLNSDSDKIPFHPYFSFKDI 80
Cdd:MTH00033 147 VSAIPSVGGSIVEWIWGGFSVSNCTLNRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDI 226

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 72385286   81 FGFIIlLSSLLLLTLLEPY---MLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGV 142
Cdd:MTH00033 227 LGFLI-LFGVFVIIGIEPRietLLQDPENFIQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGV 290
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-142 8.54e-45

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 150.33  E-value: 8.54e-45
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72385286   1 LSAIPYLGTDLVQWVWGGFAVDNATLTRFFTFH-FVLPFIVSAVVMVHLLFLHQTGSNNPLG----LNSDSDKIPFHPYF 75
Cdd:COG1290 161 FGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYY 240

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 72385286  76 SFKDIFGFIILLSSLLLLTLLEPymLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIP--NKLGGV 142
Cdd:COG1290 241 TVKDGFGFFVFLGVFALLAFFFP--INPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGV 307
CYTB MTH00046
cytochrome b; Validated
 1-141 5.04e-37

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 129.33  E-value: 5.04e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72385286    1 LSAIPYLGTDLVQWVWGGFAVDNATLTRFFTFHFVLPFIVSAVVMVHLLFLHQTGSNNPLGL-NSDSDKIPFHPYFSFKD 79
Cdd:MTH00046 141 VDSVPIVGSLVYKYIVGGFSVTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSsNGYSDVVYFHSYFTVKD 220

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 72385286   80 IFGFIILLSSLLLLTLLEPYMLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGG 141
Cdd:MTH00046 221 LFLFMVVCSLLVFWLFVSPDLVLDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRSINSKIGG 282
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 58-142 1.19e-31

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 110.04  E-value: 1.19e-31
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72385286  58 NPLGLNSDSDKIPFHPYFSFKDIFGFIILLSSLLLLTLLEPYMLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPN 137
Cdd:cd00290   1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80


                ....*
gi 72385286 138 KLGGV 142
Cdd:cd00290  81 KLLGV 85
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
1-104 5.86e-24

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 90.76  E-value: 5.86e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72385286     1 LSAIPYLGTDLVQWVWGGFAVDNATLTRFFTFHF-VLPFIVSAVVMVHLLFLHQTGSNNPLGLNSDSDKIPFHPYFSFKD 79
Cdd:pfam13631  65 LSSIPVVGTWLVWLLFGGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKM 144

                          90       100
                  ....*....|....*....|....*
gi 72385286    80 IFGFIILLSSLLLLTLLEPYMLGDP 104
Cdd:pfam13631 145 LLFFLITVALLIGLAQINPIWLGGP 169
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-57 1.12e-20

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 83.19  E-value: 1.12e-20
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*..
gi 72385286   1 LSAIPYLGTDLVQWVWGGFAVDNATLTRFFTFHFVLPFIVSAVVMVHLLFLHQTGSN 57
Cdd:cd00284 144 FSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-55 7.95e-19

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 78.19  E-value: 7.95e-19
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 72385286     1 LSAIPYLGTDLVQWVWGGFAVDNATLTRFFTFHFVLPFIVSAVVMVHLLFLHQTG 55
Cdd:pfam00033 135 LSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILMLLHLLFLHETG 189
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
109-142 3.28e-18

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 74.05  E-value: 3.28e-18
                          10        20        30
                  ....*....|....*....|....*....|....
gi 72385286   109 PANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGV 142
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGV 34
petD CHL00058
cytochrome b6/f complex subunit IV
 97-142 9.67e-10

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 53.47  E-value: 9.67e-10
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*.
gi 72385286   97 EPYMLGDPdnfipANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGV 142
Cdd:CHL00058  58 EPSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGV 98
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 97-142 6.63e-09

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 51.33  E-value: 6.63e-09
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*.
gi 72385286  97 EPYMLGDPdnfipANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGV 142
Cdd:COG5679  59 DPAMMGEP-----ADPFATPLEILPEWYLYPVFQILRVVPNKLLGI 99
petB CHL00070
cytochrome b6
 3-60 4.30e-08

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 49.72  E-value: 4.30e-08
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 72385286    3 AIPYLGTDLVQWVWGGFAVDNATLTRFFTFH-FVLPFIVSAVVMVHLLFLHQTGSNNPL 60
Cdd:CHL00070 157 AIPVIGSPLVELLRGSVSVGQSTLTRFYSLHtFVLPLLTAVFMLMHFLMIRKQGISGPL 215
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 97-142 6.03e-08

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 48.64  E-value: 6.03e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 72385286    97 EPYMLGDPdnfipANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGV 142
Cdd:TIGR01156  58 DPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGV 98
PRK03735 PRK03735
cytochrome b6; Provisional
 2-60 2.00e-06

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 45.47  E-value: 2.00e-06
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 72385286    2 SAIPYLGTDLVQWVWGGFAVDNATLTRFFTFH-FVLPFIVSAVVMVHLLFLHQTGSNNPL 60
Cdd:PRK03735 164 EAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWALAVLMLAHFLMIRKQGISGPL 223
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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