|
Name |
Accession |
Description |
Interval |
E-value |
| CYTB |
MTH00156 |
cytochrome b; Provisional |
1-142 |
8.37e-97 |
|
cytochrome b; Provisional
Pssm-ID: 214440 [Multi-domain] Cd Length: 356 Bit Score: 282.44 E-value: 8.37e-97
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72385148 1 LSAITYLGTDLVQWVWGGFAVDNATLTRFFTFHFVLPFIVSAVVMIHLLFLHQTGSNNPLGLNSDSDKIPFHPYFSFKDI 80
Cdd:MTH00156 140 LSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDL 219
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 72385148 81 FGFIILISTLLLLTLLEPYMLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGV 142
Cdd:MTH00156 220 VGFIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGV 281
|
|
| QcrB/PetB |
COG1290 |
Cytochrome b subunit of the bc complex [Energy production and conversion]; |
1-142 |
1.95e-42 |
|
Cytochrome b subunit of the bc complex [Energy production and conversion];
Pssm-ID: 440901 [Multi-domain] Cd Length: 393 Bit Score: 144.16 E-value: 1.95e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72385148 1 LSAITYLGTDLVQWVWGGFAVDNATLTRFFTFH-FVLPFIVSAVVMIHLLFLHQTGSNNPLG----LNSDSDKIPFHPYF 75
Cdd:COG1290 161 FGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYY 240
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 72385148 76 SFKDIFGFIILISTLLLLTLLEPymLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIP--NKLGGV 142
Cdd:COG1290 241 TVKDGFGFFVFLGVFALLAFFFP--INPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGV 307
|
|
| cytochrome_b_C |
cd00290 |
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
58-142 |
7.35e-32 |
|
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.
Pssm-ID: 238179 [Multi-domain] Cd Length: 147 Bit Score: 110.43 E-value: 7.35e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72385148 58 NPLGLNSDSDKIPFHPYFSFKDIFGFIILISTLLLLTLLEPYMLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPN 137
Cdd:cd00290 1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80
|
....*
gi 72385148 138 KLGGV 142
Cdd:cd00290 81 KLLGV 85
|
|
| Cytochrom_B_N_2 |
pfam13631 |
Cytochrome b(N-terminal)/b6/petB; |
1-104 |
3.43e-22 |
|
Cytochrome b(N-terminal)/b6/petB;
Pssm-ID: 433364 Cd Length: 169 Bit Score: 86.14 E-value: 3.43e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72385148 1 LSAITYLGTDLVQWVWGGFAVDNATLTRFFTFHF-VLPFIVSAVVMIHLLFLHQTGSNNPLGLNSDSDKIPFHPYFSFKD 79
Cdd:pfam13631 65 LSSIPVVGTWLVWLLFGGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKM 144
|
90 100
....*....|....*....|....*
gi 72385148 80 IFGFIILISTLLLLTLLEPYMLGDP 104
Cdd:pfam13631 145 LLFFLITVALLIGLAQINPIWLGGP 169
|
|
| cytb6/f_IV |
TIGR01156 |
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ... |
97-142 |
3.99e-08 |
|
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]
Pssm-ID: 130224 [Multi-domain] Cd Length: 159 Bit Score: 49.41 E-value: 3.99e-08
10 20 30 40
....*....|....*....|....*....|....*....|....*.
gi 72385148 97 EPYMLGDPdnfipANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGV 142
Cdd:TIGR01156 58 DPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGV 98
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| CYTB |
MTH00156 |
cytochrome b; Provisional |
1-142 |
8.37e-97 |
|
cytochrome b; Provisional
Pssm-ID: 214440 [Multi-domain] Cd Length: 356 Bit Score: 282.44 E-value: 8.37e-97
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72385148 1 LSAITYLGTDLVQWVWGGFAVDNATLTRFFTFHFVLPFIVSAVVMIHLLFLHQTGSNNPLGLNSDSDKIPFHPYFSFKDI 80
Cdd:MTH00156 140 LSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDL 219
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 72385148 81 FGFIILISTLLLLTLLEPYMLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGV 142
Cdd:MTH00156 220 VGFIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGV 281
|
|
| CYTB |
MTH00131 |
cytochrome b; Provisional |
1-142 |
2.60e-85 |
|
cytochrome b; Provisional
Pssm-ID: 177189 [Multi-domain] Cd Length: 380 Bit Score: 254.19 E-value: 2.60e-85
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72385148 1 LSAITYLGTDLVQWVWGGFAVDNATLTRFFTFHFVLPFIVSAVVMIHLLFLHQTGSNNPLGLNSDSDKIPFHPYFSFKDI 80
Cdd:MTH00131 150 LSAVPYVGNTLVQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDL 229
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 72385148 81 FGFIILISTLLLLTLLEPYMLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGV 142
Cdd:MTH00131 230 LGFAILLLALTSLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGV 291
|
|
| CYTB |
MTH00191 |
cytochrome b; Provisional |
1-142 |
2.96e-85 |
|
cytochrome b; Provisional
Pssm-ID: 177239 [Multi-domain] Cd Length: 365 Bit Score: 253.30 E-value: 2.96e-85
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72385148 1 LSAITYLGTDLVQWVWGGFAVDNATLTRFFTFHFVLPFIVSAVVMIHLLFLHQTGSNNPLGLNSDSDKIPFHPYFSFKDI 80
Cdd:MTH00191 147 LSAIPYIGDDLVQWLWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDI 226
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 72385148 81 FGFIILISTLLLLTLLEPYMLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGV 142
Cdd:MTH00191 227 LGFFILLFLLLFLVLFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGV 288
|
|
| CYTB |
MTH00119 |
cytochrome b; Provisional |
1-142 |
9.66e-85 |
|
cytochrome b; Provisional
Pssm-ID: 214425 [Multi-domain] Cd Length: 380 Bit Score: 252.51 E-value: 9.66e-85
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72385148 1 LSAITYLGTDLVQWVWGGFAVDNATLTRFFTFHFVLPFIVSAVVMIHLLFLHQTGSNNPLGLNSDSDKIPFHPYFSFKDI 80
Cdd:MTH00119 151 LSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDL 230
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 72385148 81 FGFIILISTLLLLTLLEPYMLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGV 142
Cdd:MTH00119 231 LGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGV 292
|
|
| CYTB |
MTH00100 |
cytochrome b; Provisional |
1-142 |
1.23e-84 |
|
cytochrome b; Provisional
Pssm-ID: 177162 [Multi-domain] Cd Length: 379 Bit Score: 252.25 E-value: 1.23e-84
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72385148 1 LSAITYLGTDLVQWVWGGFAVDNATLTRFFTFHFVLPFIVSAVVMIHLLFLHQTGSNNPLGLNSDSDKIPFHPYFSFKDI 80
Cdd:MTH00100 150 LSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDI 229
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 72385148 81 FGFIILISTLLLLTLLEPYMLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGV 142
Cdd:MTH00100 230 LGLLLLILTLMLLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGV 291
|
|
| CYTB |
MTH00074 |
cytochrome b; Provisional |
1-142 |
4.82e-83 |
|
cytochrome b; Provisional
Pssm-ID: 177145 [Multi-domain] Cd Length: 380 Bit Score: 248.44 E-value: 4.82e-83
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72385148 1 LSAITYLGTDLVQWVWGGFAVDNATLTRFFTFHFVLPFIVSAVVMIHLLFLHQTGSNNPLGLNSDSDKIPFHPYFSFKDI 80
Cdd:MTH00074 151 LSAIPYMGDTLVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDL 230
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 72385148 81 FGFIILISTLLLLTLLEPYMLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGV 142
Cdd:MTH00074 231 LGFLIMLTALALLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGV 292
|
|
| CYTB |
MTH00145 |
cytochrome b; Provisional |
1-142 |
1.75e-82 |
|
cytochrome b; Provisional
Pssm-ID: 177203 [Multi-domain] Cd Length: 379 Bit Score: 246.74 E-value: 1.75e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72385148 1 LSAITYLGTDLVQWVWGGFAVDNATLTRFFTFHFVLPFIVSAVVMIHLLFLHQTGSNNPLGLNSDSDKIPFHPYFSFKDI 80
Cdd:MTH00145 151 LSAIPYVGKMLVEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDL 230
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 72385148 81 FGFIILISTLLLLTLLEPYMLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGV 142
Cdd:MTH00145 231 VGFVVLLFLLVFLVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGV 292
|
|
| CYTB |
MTH00016 |
cytochrome b; Validated |
1-142 |
2.26e-81 |
|
cytochrome b; Validated
Pssm-ID: 177102 [Multi-domain] Cd Length: 378 Bit Score: 243.82 E-value: 2.26e-81
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72385148 1 LSAITYLGTDLVQWVWGGFAVDNATLTRFFTFHFVLPFIVSAVVMIHLLFLHQTGSNNPLGLNSDSDKIPFHPYFSFKDI 80
Cdd:MTH00016 151 LSAIPYIGKMLVQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDI 230
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 72385148 81 FGFIILISTLLLLTLLEPYMLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGV 142
Cdd:MTH00016 231 VGFIVMLFLLLSVVLLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGV 292
|
|
| CYTB |
MTH00034 |
cytochrome b; Validated |
1-142 |
2.35e-76 |
|
cytochrome b; Validated
Pssm-ID: 177109 [Multi-domain] Cd Length: 379 Bit Score: 231.13 E-value: 2.35e-76
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72385148 1 LSAITYLGTDLVQWVWGGFAVDNATLTRFFTFHFVLPFIVSAVVMIHLLFLHQTGSNNPLGLNSDSDKIPFHPYFSFKDI 80
Cdd:MTH00034 150 VSAVPYIGTDIVQWIWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDL 229
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 72385148 81 FGFIILISTLLLLTLLEPYMLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGV 142
Cdd:MTH00034 230 VGFLILFAALSSLALLFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGV 291
|
|
| CYTB |
MTH00224 |
cytochrome b; Provisional |
1-142 |
1.19e-66 |
|
cytochrome b; Provisional
Pssm-ID: 164767 [Multi-domain] Cd Length: 379 Bit Score: 206.31 E-value: 1.19e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72385148 1 LSAITYLGTDLVQWVWGGFAVDNATLTRFFTFHFVLPFIVSAVVMIHLLFLHQTGSNNPLGLNSDSDKIPFHPYFSFKDI 80
Cdd:MTH00224 151 FSAIPYIGKDLVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDA 230
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 72385148 81 FGFIILISTLLLLTLLEPYMLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGV 142
Cdd:MTH00224 231 LGYLIAILLLSLMVLFEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGV 292
|
|
| CYTB |
MTH00022 |
cytochrome b; Validated |
1-142 |
4.48e-65 |
|
cytochrome b; Validated
Pssm-ID: 164595 [Multi-domain] Cd Length: 379 Bit Score: 202.24 E-value: 4.48e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72385148 1 LSAITYLGTDLVQWVWGGFAVDNATLTRFFTFHFVLPFIVSAVVMIHLLFLHQTGSNNPLGLNSDSDKIPFHPYFSFKDI 80
Cdd:MTH00022 149 LSAIPYVGTDIVQWVWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDW 228
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 72385148 81 FGFIILISTLLLLTLLEPYMLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGV 142
Cdd:MTH00022 229 YGIVVLFFLLSFIVYFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGV 290
|
|
| CYTB |
MTH00053 |
cytochrome b; Provisional |
1-142 |
2.15e-63 |
|
cytochrome b; Provisional
Pssm-ID: 164624 [Multi-domain] Cd Length: 381 Bit Score: 198.01 E-value: 2.15e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72385148 1 LSAITYLGTDLVQWVWGGFAVDNATLTRFFTFHFVLPFIVSAVVMIHLLFLHQTGSNNPLGLNSDSDKIPFHPYFSFKDI 80
Cdd:MTH00053 151 LSAIPYVGDDIVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDL 230
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 72385148 81 FGFIILISTLLLLTLLEPYMLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGV 142
Cdd:MTH00053 231 YGAVILLIILSIIVFLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGV 292
|
|
| CYTB |
MTH00086 |
cytochrome b; Provisional |
1-142 |
2.41e-50 |
|
cytochrome b; Provisional
Pssm-ID: 177151 [Multi-domain] Cd Length: 355 Bit Score: 163.96 E-value: 2.41e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72385148 1 LSAITYLGTDLVQWVWGGFAVDNATLTRFFTFHFVLPFIVSAVVMIHLLFLHQTGSNNPLGLNSDSDKIPFHPYFSFKDI 80
Cdd:MTH00086 139 LSVIPIWGPSIVMWIWGGFGVSSATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDA 218
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 72385148 81 FGFIILISTLLLLTLLePYMLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGV 142
Cdd:MTH00086 219 YNIIFWLVFIIFSLFY-PFNLGDPEMFIEADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGV 279
|
|
| CYTB |
MTH00033 |
cytochrome b; Provisional |
1-142 |
8.06e-48 |
|
cytochrome b; Provisional
Pssm-ID: 133672 [Multi-domain] Cd Length: 383 Bit Score: 158.18 E-value: 8.06e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72385148 1 LSAITYLGTDLVQWVWGGFAVDNATLTRFFTFHFVLPFIVSAVVMIHLLFLHQTGSNNPLGLNSDSDKIPFHPYFSFKDI 80
Cdd:MTH00033 147 VSAIPSVGGSIVEWIWGGFSVSNCTLNRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDI 226
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 72385148 81 FGFiILISTLLLLTLLEPY---MLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGV 142
Cdd:MTH00033 227 LGF-LILFGVFVIIGIEPRietLLQDPENFIQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGV 290
|
|
| QcrB/PetB |
COG1290 |
Cytochrome b subunit of the bc complex [Energy production and conversion]; |
1-142 |
1.95e-42 |
|
Cytochrome b subunit of the bc complex [Energy production and conversion];
Pssm-ID: 440901 [Multi-domain] Cd Length: 393 Bit Score: 144.16 E-value: 1.95e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72385148 1 LSAITYLGTDLVQWVWGGFAVDNATLTRFFTFH-FVLPFIVSAVVMIHLLFLHQTGSNNPLG----LNSDSDKIPFHPYF 75
Cdd:COG1290 161 FGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYY 240
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 72385148 76 SFKDIFGFIILISTLLLLTLLEPymLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIP--NKLGGV 142
Cdd:COG1290 241 TVKDGFGFFVFLGVFALLAFFFP--INPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGV 307
|
|
| CYTB |
MTH00046 |
cytochrome b; Validated |
1-141 |
3.56e-35 |
|
cytochrome b; Validated
Pssm-ID: 177121 [Multi-domain] Cd Length: 355 Bit Score: 124.32 E-value: 3.56e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72385148 1 LSAITYLGTDLVQWVWGGFAVDNATLTRFFTFHFVLPFIVSAVVMIHLLFLHQTGSNNPLGL-NSDSDKIPFHPYFSFKD 79
Cdd:MTH00046 141 VDSVPIVGSLVYKYIVGGFSVTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSsNGYSDVVYFHSYFTVKD 220
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 72385148 80 IFGFIILISTLLLLTLLEPYMLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGG 141
Cdd:MTH00046 221 LFLFMVVCSLLVFWLFVSPDLVLDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRSINSKIGG 282
|
|
| cytochrome_b_C |
cd00290 |
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
58-142 |
7.35e-32 |
|
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.
Pssm-ID: 238179 [Multi-domain] Cd Length: 147 Bit Score: 110.43 E-value: 7.35e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72385148 58 NPLGLNSDSDKIPFHPYFSFKDIFGFIILISTLLLLTLLEPYMLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPN 137
Cdd:cd00290 1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80
|
....*
gi 72385148 138 KLGGV 142
Cdd:cd00290 81 KLLGV 85
|
|
| Cytochrom_B_N_2 |
pfam13631 |
Cytochrome b(N-terminal)/b6/petB; |
1-104 |
3.43e-22 |
|
Cytochrome b(N-terminal)/b6/petB;
Pssm-ID: 433364 Cd Length: 169 Bit Score: 86.14 E-value: 3.43e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72385148 1 LSAITYLGTDLVQWVWGGFAVDNATLTRFFTFHF-VLPFIVSAVVMIHLLFLHQTGSNNPLGLNSDSDKIPFHPYFSFKD 79
Cdd:pfam13631 65 LSSIPVVGTWLVWLLFGGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKM 144
|
90 100
....*....|....*....|....*
gi 72385148 80 IFGFIILISTLLLLTLLEPYMLGDP 104
Cdd:pfam13631 145 LLFFLITVALLIGLAQINPIWLGGP 169
|
|
| Cytochrome_b_N |
cd00284 |
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
1-57 |
1.56e-19 |
|
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.
Pssm-ID: 238176 Cd Length: 200 Bit Score: 80.10 E-value: 1.56e-19
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 72385148 1 LSAITYLGTDLVQWVWGGFAVDNATLTRFFTFHFVLPFIVSAVVMIHLLFLHQTGSN 57
Cdd:cd00284 144 FSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
|
|
| Cytochrom_B_C |
pfam00032 |
Cytochrome b(C-terminal)/b6/petD; |
109-142 |
1.83e-18 |
|
Cytochrome b(C-terminal)/b6/petD;
Pssm-ID: 459640 [Multi-domain] Cd Length: 101 Bit Score: 74.82 E-value: 1.83e-18
10 20 30
....*....|....*....|....*....|....
gi 72385148 109 PANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGV 142
Cdd:pfam00032 1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGV 34
|
|
| Cytochrome_B |
pfam00033 |
Cytochrome b/b6/petB; |
1-55 |
1.54e-17 |
|
Cytochrome b/b6/petB;
Pssm-ID: 306530 Cd Length: 189 Bit Score: 74.73 E-value: 1.54e-17
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*
gi 72385148 1 LSAITYLGTDLVQWVWGGFAVDNATLTRFFTFHFVLPFIVSAVVMIHLLFLHQTG 55
Cdd:pfam00033 135 LSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILMLLHLLFLHETG 189
|
|
| petD |
CHL00058 |
cytochrome b6/f complex subunit IV |
97-142 |
6.25e-10 |
|
cytochrome b6/f complex subunit IV
Pssm-ID: 176998 Cd Length: 160 Bit Score: 54.24 E-value: 6.25e-10
10 20 30 40
....*....|....*....|....*....|....*....|....*.
gi 72385148 97 EPYMLGDPdnfipANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGV 142
Cdd:CHL00058 58 EPSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGV 98
|
|
| PetD |
COG5679 |
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ... |
97-142 |
4.25e-09 |
|
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];
Pssm-ID: 444393 [Multi-domain] Cd Length: 161 Bit Score: 52.10 E-value: 4.25e-09
10 20 30 40
....*....|....*....|....*....|....*....|....*.
gi 72385148 97 EPYMLGDPdnfipANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGV 142
Cdd:COG5679 59 DPAMMGEP-----ADPFATPLEILPEWYLYPVFQILRVVPNKLLGI 99
|
|
| cytb6/f_IV |
TIGR01156 |
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ... |
97-142 |
3.99e-08 |
|
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]
Pssm-ID: 130224 [Multi-domain] Cd Length: 159 Bit Score: 49.41 E-value: 3.99e-08
10 20 30 40
....*....|....*....|....*....|....*....|....*.
gi 72385148 97 EPYMLGDPdnfipANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGV 142
Cdd:TIGR01156 58 DPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGV 98
|
|
| petB |
CHL00070 |
cytochrome b6 |
3-60 |
9.15e-07 |
|
cytochrome b6
Pssm-ID: 177009 Cd Length: 215 Bit Score: 46.25 E-value: 9.15e-07
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 72385148 3 AITYLGTDLVQWVWGGFAVDNATLTRFFTFH-FVLPFIVSAVVMIHLLFLHQTGSNNPL 60
Cdd:CHL00070 157 AIPVIGSPLVELLRGSVSVGQSTLTRFYSLHtFVLPLLTAVFMLMHFLMIRKQGISGPL 215
|
|
| PRK03735 |
PRK03735 |
cytochrome b6; Provisional |
2-60 |
4.58e-05 |
|
cytochrome b6; Provisional
Pssm-ID: 179639 Cd Length: 223 Bit Score: 41.62 E-value: 4.58e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 72385148 2 SAITYLGTDLVQWVWGGFAVDNATLTRFFTFH-FVLPFIVSAVVMIHLLFLHQTGSNNPL 60
Cdd:PRK03735 164 EAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWALAVLMLAHFLMIRKQGISGPL 223
|
|
|