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Conserved domains on  [gi|723742243|ref|XP_010312759|]
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uncharacterized protein LOC101251244 isoform X2 [Solanum lycopersicum]

Protein Classification

N-acetyltransferase( domain architecture ID 10249412)

N-acetyltransferase catalyzes the transfer of the acetyl group from acetyl coenzyme A donor to a substrate; contains Tudor-like Agenet domains, Jas domain(s) which in plant transcriptional repressors bind Groucho/Tup1-type co-repressor TOPLESS (TPL) and TPL-related proteins (TPRs), and plant homeodomain (PHD) finger(s) which bind zinc and may be involved in protein-protein interaction

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
BAH super family cl02608
BAH, or Bromo Adjacent Homology domain (also called ELM1 and BAM for Bromo Adjacent Motif). ...
 74-202 5.73e-35

BAH, or Bromo Adjacent Homology domain (also called ELM1 and BAM for Bromo Adjacent Motif). BAH domains have first been described as domains found in the polybromo protein and Yeast Rsc1/Rsc2 (Remodeling of the Structure of Chromatin). They also occur in mammalian DNA methyltransferases and the MTA1 subunits of histone deacetylase complexes. A BAH domain is also found in Yeast Sir3p and in the origin receptor complex protein 1 (Orc1p), where it was found to interact with the N-terminal lobe of the silence information regulator 1 protein (Sir1p), confirming the initial hypothesis that BAH plays a role in protein-protein interactions.


The actual alignment was detected with superfamily member cd04721:

Pssm-ID: 470629  Cd Length: 130  Bit Score: 127.56  E-value: 5.73e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723742243  74 FRRNGTTIAVNSFVIFTDKKESQHVGYLEDFYENKKGQNKVKVRCFEYLQDIKCAIPELEGHPREVLFTSHVEGMQANCI 153
Cdd:cd04721    1 FCRNGVTISVHDFVYVLSEEEDRYVAYIEDLYEDKKGSKMVKVRWFHTTDEVGAALSPDSVNPREIFLSPNLQVISVECI 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 723742243 154 DAIAIVLTPGDYDKYISLLRKILPSGVYVCSREI-KYKIMPFSLNELEGY 202
Cdd:cd04721   81 DGLATVLTREHYEKFQSVPKNSSELQAYFCYRQIdNNKVKPFDITQLRGY 130
Agenet pfam05641
Agenet domain; This domain is related to the TUDOR domain pfam00567. The function of the ...
 323-377 2.35e-12

Agenet domain; This domain is related to the TUDOR domain pfam00567. The function of the agenet domain is unknown. This family now matches both the two Agenet domains in the FMR proteins.


:

Pssm-ID: 461700  Cd Length: 61  Bit Score: 61.95  E-value: 2.35e-12
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 723742243  323 GDNLEVLCQDSGLRGCWFRYKVLDV-SQKRMKVQYDDIEDCDAPEKLEEWVPSYRV 377
Cdd:pfam05641   1 GDKVEVLSDEEGFRGAWFRAKVIKVlKGDKYLVEYDDLLDEDGGGPLEEWVPASDI 56
Agenet smart00743
Tudor-like domain present in plant sequences; Domain in plant sequences with possible ...
 405-462 2.01e-10

Tudor-like domain present in plant sequences; Domain in plant sequences with possible chromatin-associated functions.


:

Pssm-ID: 214798  Cd Length: 59  Bit Score: 56.18  E-value: 2.01e-10
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 723742243   405 SFEVGAAVDAWWSDGWWEGVVaeIDVCGSGHHQVYFPGENMLLEIQ--RKNLRTSRDWID 462
Cdd:smart00743   2 DFKEGDRVEVFSEDSWWEAVV--TKVLGDGKYLVEYKGESEPLELTvdWSDLRPHPPWVD 59
 
Name Accession Description Interval E-value
BAH_plant_1 cd04721
BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH ...
 74-202 5.73e-35

BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.


Pssm-ID: 240072  Cd Length: 130  Bit Score: 127.56  E-value: 5.73e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723742243  74 FRRNGTTIAVNSFVIFTDKKESQHVGYLEDFYENKKGQNKVKVRCFEYLQDIKCAIPELEGHPREVLFTSHVEGMQANCI 153
Cdd:cd04721    1 FCRNGVTISVHDFVYVLSEEEDRYVAYIEDLYEDKKGSKMVKVRWFHTTDEVGAALSPDSVNPREIFLSPNLQVISVECI 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 723742243 154 DAIAIVLTPGDYDKYISLLRKILPSGVYVCSREI-KYKIMPFSLNELEGY 202
Cdd:cd04721   81 DGLATVLTREHYEKFQSVPKNSSELQAYFCYRQIdNNKVKPFDITQLRGY 130
Agenet pfam05641
Agenet domain; This domain is related to the TUDOR domain pfam00567. The function of the ...
 323-377 2.35e-12

Agenet domain; This domain is related to the TUDOR domain pfam00567. The function of the agenet domain is unknown. This family now matches both the two Agenet domains in the FMR proteins.


Pssm-ID: 461700  Cd Length: 61  Bit Score: 61.95  E-value: 2.35e-12
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 723742243  323 GDNLEVLCQDSGLRGCWFRYKVLDV-SQKRMKVQYDDIEDCDAPEKLEEWVPSYRV 377
Cdd:pfam05641   1 GDKVEVLSDEEGFRGAWFRAKVIKVlKGDKYLVEYDDLLDEDGGGPLEEWVPASDI 56
Agenet smart00743
Tudor-like domain present in plant sequences; Domain in plant sequences with possible ...
 405-462 2.01e-10

Tudor-like domain present in plant sequences; Domain in plant sequences with possible chromatin-associated functions.


Pssm-ID: 214798  Cd Length: 59  Bit Score: 56.18  E-value: 2.01e-10
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 723742243   405 SFEVGAAVDAWWSDGWWEGVVaeIDVCGSGHHQVYFPGENMLLEIQ--RKNLRTSRDWID 462
Cdd:smart00743   2 DFKEGDRVEVFSEDSWWEAVV--TKVLGDGKYLVEYKGESEPLELTvdWSDLRPHPPWVD 59
Tudor_Agenet_AtDUF_rpt1_3 cd20405
first and third Tudor-like Agenet domains found in a family of Arabidopsis thaliana DUF724 ...
 320-377 1.57e-09

first and third Tudor-like Agenet domains found in a family of Arabidopsis thaliana DUF724 domain-containing proteins (AtDUFs); The family includes a group of AtDUFs (AtDUF1-3 and AtDUF6-8) that may be involved in the polar growth of plant cells via transportation of RNAs. Members of this family have four Tudor-like Agenet domains, except for AtDUF8, which contains only two copies of the Tudor-like Agenet domain. AtDUF4 and AtDUF5 are not included here due to the lack of a Tudor-like Agenet domain. The model corresponds to the first and third Tudor-like Agenet domains in AtDUF1-3 and AtDUF6-7, as well as the first Tudor-like Agenet domain in AtDUF8. The Tudor domain binds to proteins with dimethylated arginine or lysine residues, and may also bind methylated histone tails to facilitate protein-protein interactions.


Pssm-ID: 410476  Cd Length: 65  Bit Score: 54.19  E-value: 1.57e-09
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 723742243 320 IEVGDNLEVLCQDSGLRGCWFRYKVLDVS--QKRMKVQYDDIEDCDAPEKLEEWVPSYRV 377
Cdd:cd20405    1 FSKGTEVEVSSEEEGFRGSWYRAIVVKEPegEKKFLVKYDELLLDDGSEPLEETVDLRRV 60
Tudor_Agenet_AtDUF_rpt2_4 cd20406
second and fourth Tudor-like Agenet domains found in the family of Arabidopsis thaliana DUF724 ...
 408-455 5.34e-04

second and fourth Tudor-like Agenet domains found in the family of Arabidopsis thaliana DUF724 domain-containing proteins (AtDUFs); The family includes a group of AtDUFs (AtDUF1-3 and AtDUF6-8) that may be involved in the polar growth of plant cells via transportation of RNAs. Members of this family have four Tudor-like Agenet domains, except for AtDUF8, which contains only two copies of the Tudor-like Agenet domain. AtDUF4 and AtDUF5 are not included here due to the lack of a Tudor-like Agenet domain. The model corresponds to the second and fourth Tudor-like Agenet domains in AtDUF1-3 and AtDUF6-7, as well as the first Tudor-like Agenet domain in AtDUF8. The Tudor domain binds to proteins with dimethylated arginine or lysine residues, and may also bind methylated histone tails to facilitate protein-protein interactions.


Pssm-ID: 410477  Cd Length: 47  Bit Score: 37.96  E-value: 5.34e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*...
gi 723742243 408 VGAAVDAWWSDGWWEGVVaeIDVCGSGHHQVYFPGENMLLEIQRKNLR 455
Cdd:cd20406    1 LGDKVDAFYNGGWWPGVV--TKVLEDNRYLVYLDATKEELEFEHSDLR 46
BAH pfam01426
BAH domain; This domain has been called BAH (Bromo adjacent homology) domain and has also been ...
 80-184 7.99e-03

BAH domain; This domain has been called BAH (Bromo adjacent homology) domain and has also been called ELM1 and BAM (Bromo adjacent motif) domain. The function of this domain is unknown but may be involved in protein-protein interaction.


Pssm-ID: 460207  Cd Length: 120  Bit Score: 36.52  E-value: 7.99e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723742243   80 TIAVNSFVIF--TDKKESQHVGYLEDFYENKKGQNK-VKVRCFEYLQDIKcAIPELEGHPREVLFTSHVEGMQANCIDAI 156
Cdd:pfam01426   2 TYSVGDFVLVepDDADEPYYVARIEELFEDTKNGKKmVRVQWFYRPEETV-HRAGKAFNKDELFLSDEEDDVPLSAIIGK 80

                          90       100
                  ....*....|....*....|....*...
gi 723742243  157 AIVLTPGDYDKyiSLLRKILPSGVYVCS 184
Cdd:pfam01426  81 CSVLHKSDLES--LDPYKIKEPDDFFCE 106
 
Name Accession Description Interval E-value
BAH_plant_1 cd04721
BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH ...
 74-202 5.73e-35

BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.


Pssm-ID: 240072  Cd Length: 130  Bit Score: 127.56  E-value: 5.73e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723742243  74 FRRNGTTIAVNSFVIFTDKKESQHVGYLEDFYENKKGQNKVKVRCFEYLQDIKCAIPELEGHPREVLFTSHVEGMQANCI 153
Cdd:cd04721    1 FCRNGVTISVHDFVYVLSEEEDRYVAYIEDLYEDKKGSKMVKVRWFHTTDEVGAALSPDSVNPREIFLSPNLQVISVECI 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 723742243 154 DAIAIVLTPGDYDKYISLLRKILPSGVYVCSREI-KYKIMPFSLNELEGY 202
Cdd:cd04721   81 DGLATVLTREHYEKFQSVPKNSSELQAYFCYRQIdNNKVKPFDITQLRGY 130
Agenet pfam05641
Agenet domain; This domain is related to the TUDOR domain pfam00567. The function of the ...
 323-377 2.35e-12

Agenet domain; This domain is related to the TUDOR domain pfam00567. The function of the agenet domain is unknown. This family now matches both the two Agenet domains in the FMR proteins.


Pssm-ID: 461700  Cd Length: 61  Bit Score: 61.95  E-value: 2.35e-12
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 723742243  323 GDNLEVLCQDSGLRGCWFRYKVLDV-SQKRMKVQYDDIEDCDAPEKLEEWVPSYRV 377
Cdd:pfam05641   1 GDKVEVLSDEEGFRGAWFRAKVIKVlKGDKYLVEYDDLLDEDGGGPLEEWVPASDI 56
Agenet smart00743
Tudor-like domain present in plant sequences; Domain in plant sequences with possible ...
 405-462 2.01e-10

Tudor-like domain present in plant sequences; Domain in plant sequences with possible chromatin-associated functions.


Pssm-ID: 214798  Cd Length: 59  Bit Score: 56.18  E-value: 2.01e-10
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 723742243   405 SFEVGAAVDAWWSDGWWEGVVaeIDVCGSGHHQVYFPGENMLLEIQ--RKNLRTSRDWID 462
Cdd:smart00743   2 DFKEGDRVEVFSEDSWWEAVV--TKVLGDGKYLVEYKGESEPLELTvdWSDLRPHPPWVD 59
Tudor_Agenet_AtDUF_rpt1_3 cd20405
first and third Tudor-like Agenet domains found in a family of Arabidopsis thaliana DUF724 ...
 320-377 1.57e-09

first and third Tudor-like Agenet domains found in a family of Arabidopsis thaliana DUF724 domain-containing proteins (AtDUFs); The family includes a group of AtDUFs (AtDUF1-3 and AtDUF6-8) that may be involved in the polar growth of plant cells via transportation of RNAs. Members of this family have four Tudor-like Agenet domains, except for AtDUF8, which contains only two copies of the Tudor-like Agenet domain. AtDUF4 and AtDUF5 are not included here due to the lack of a Tudor-like Agenet domain. The model corresponds to the first and third Tudor-like Agenet domains in AtDUF1-3 and AtDUF6-7, as well as the first Tudor-like Agenet domain in AtDUF8. The Tudor domain binds to proteins with dimethylated arginine or lysine residues, and may also bind methylated histone tails to facilitate protein-protein interactions.


Pssm-ID: 410476  Cd Length: 65  Bit Score: 54.19  E-value: 1.57e-09
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 723742243 320 IEVGDNLEVLCQDSGLRGCWFRYKVLDVS--QKRMKVQYDDIEDCDAPEKLEEWVPSYRV 377
Cdd:cd20405    1 FSKGTEVEVSSEEEGFRGSWYRAIVVKEPegEKKFLVKYDELLLDDGSEPLEETVDLRRV 60
BAH_BAHCC1 cd04714
BAH, or Bromo Adjacent Homology domain, as present in mammalian BAHCC1 and similar proteins. ...
 78-190 6.12e-05

BAH, or Bromo Adjacent Homology domain, as present in mammalian BAHCC1 and similar proteins. BAHCC1 stands for BAH domain and coiled-coil containing 1. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.


Pssm-ID: 240065  Cd Length: 121  Bit Score: 42.77  E-value: 6.12e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723742243  78 GTTIAVNSFVIF--TDKKESQHVGYLEDFYENKKGQNKVKVRCFEYLQDIKCAiPELEGHPREVLFTSHVEGMQANCIDA 155
Cdd:cd04714    1 KEIIRVGDCVLFksPGRPSLPYVARIESLWEDPEGNMVVRVKWYYRPEETKGG-RKPNHGEKELFASDHQDENSVQTIEH 79

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 723742243 156 IAIVLTPGDYDKYISLLRKIlPSGVYVCSREIKYK 190
Cdd:cd04714   80 KCYVLTFAEYERLARVKKKP-QDGVDFYYCAGTYN 113
Tudor_Agenet_AtDUF_rpt2_4 cd20406
second and fourth Tudor-like Agenet domains found in the family of Arabidopsis thaliana DUF724 ...
 408-455 5.34e-04

second and fourth Tudor-like Agenet domains found in the family of Arabidopsis thaliana DUF724 domain-containing proteins (AtDUFs); The family includes a group of AtDUFs (AtDUF1-3 and AtDUF6-8) that may be involved in the polar growth of plant cells via transportation of RNAs. Members of this family have four Tudor-like Agenet domains, except for AtDUF8, which contains only two copies of the Tudor-like Agenet domain. AtDUF4 and AtDUF5 are not included here due to the lack of a Tudor-like Agenet domain. The model corresponds to the second and fourth Tudor-like Agenet domains in AtDUF1-3 and AtDUF6-7, as well as the first Tudor-like Agenet domain in AtDUF8. The Tudor domain binds to proteins with dimethylated arginine or lysine residues, and may also bind methylated histone tails to facilitate protein-protein interactions.


Pssm-ID: 410477  Cd Length: 47  Bit Score: 37.96  E-value: 5.34e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*...
gi 723742243 408 VGAAVDAWWSDGWWEGVVaeIDVCGSGHHQVYFPGENMLLEIQRKNLR 455
Cdd:cd20406    1 LGDKVDAFYNGGWWPGVV--TKVLEDNRYLVYLDATKEELEFEHSDLR 46
BAH_plant_3 cd04713
BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH ...
 66-144 1.22e-03

BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.


Pssm-ID: 240064  Cd Length: 146  Bit Score: 39.37  E-value: 1.22e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723742243  66 KQRTHYPSFRRNGTTIAVNSFVIFT-DKKESQHVGYLEDFYENKKGQNKVKVRCFEYLQDIKcaipelEGH--------P 136
Cdd:cd04713    6 KKKCHYTSFEKDGNKYRLEDCVLLVpEDDQKPYIAIIKDIYKQEEGSLKLEVQWLYRPEEIE------KKKggnwkaedP 79


                 ....*...
gi 723742243 137 REVLFTSH 144
Cdd:cd04713   80 RELFYSFH 87
BAH cd04370
BAH, or Bromo Adjacent Homology domain (also called ELM1 and BAM for Bromo Adjacent Motif). ...
 78-183 1.56e-03

BAH, or Bromo Adjacent Homology domain (also called ELM1 and BAM for Bromo Adjacent Motif). BAH domains have first been described as domains found in the polybromo protein and Yeast Rsc1/Rsc2 (Remodeling of the Structure of Chromatin). They also occur in mammalian DNA methyltransferases and the MTA1 subunits of histone deacetylase complexes. A BAH domain is also found in Yeast Sir3p and in the origin receptor complex protein 1 (Orc1p), where it was found to interact with the N-terminal lobe of the silence information regulator 1 protein (Sir1p), confirming the initial hypothesis that BAH plays a role in protein-protein interactions.


Pssm-ID: 239835 [Multi-domain]  Cd Length: 123  Bit Score: 38.53  E-value: 1.56e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723742243  78 GTTIAVNSFVI----FTDKKESQHVGYLEDFYENKKGQNKVKVRCFEYLQDIKcaiPELEGH--PREVLFTSHVEGMQAN 151
Cdd:cd04370    1 GITYEVGDSVYvepdDSIKSDPPYIARIEELWEDTNGSKQVKVRWFYRPEETP---KGLSPFalRRELFLSDHLDEIPVE 77

                         90       100       110
                 ....*....|....*....|....*....|..
gi 723742243 152 CIDAIAIVLTPGDYDKYISLLRKILPSGVYVC 183
Cdd:cd04370   78 SIIGKCKVLFVSEFEGLKQRPNKIDTDDFFCR 109
Tudor_Agenet_FMRP-like_rpt2 cd20403
second Tudor-like Agenet domain found in the fragile X mental retardation protein (FMRP) ...
 408-443 4.42e-03

second Tudor-like Agenet domain found in the fragile X mental retardation protein (FMRP) family; The FMRP family includes synaptic functional regulator FMR1, fragile X mental retardation syndrome-related protein 1 (FXR1) and 2 (FXR2). FMR1, also called fragile X mental retardation protein 1 (FMRP), is a multifunctional polyribosome-associated RNA-binding protein that plays a central role in neuronal development and synaptic plasticity through the regulation of alternative mRNA splicing, mRNA stability, mRNA dendritic transport and postsynaptic local protein synthesis of a subset of mRNAs. FXR1 and FXR2 are RNA-binding proteins that shuttle between the nucleus and cytoplasm and associate with polyribosomes, predominantly with the 60S ribosomal subunit. Members of this family contain two copies of the Tudor-like Agenet domain. The model corresponds to the second one. The Tudor domain binds to proteins with dimethylated arginine or lysine residues, and may also bind methylated histone tails to facilitate protein-protein interactions.


Pssm-ID: 410474  Cd Length: 50  Bit Score: 35.37  E-value: 4.42e-03
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 723742243 408 VGAAVDAWWS--DGWWEGVVAEidvCGSGHHQVYFPGE 443
Cdd:cd20403    1 EGDEVEVYSRapDGWWEGVVKM---VKGEFYVVEFPGF 35
BAH pfam01426
BAH domain; This domain has been called BAH (Bromo adjacent homology) domain and has also been ...
 80-184 7.99e-03

BAH domain; This domain has been called BAH (Bromo adjacent homology) domain and has also been called ELM1 and BAM (Bromo adjacent motif) domain. The function of this domain is unknown but may be involved in protein-protein interaction.


Pssm-ID: 460207  Cd Length: 120  Bit Score: 36.52  E-value: 7.99e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723742243   80 TIAVNSFVIF--TDKKESQHVGYLEDFYENKKGQNK-VKVRCFEYLQDIKcAIPELEGHPREVLFTSHVEGMQANCIDAI 156
Cdd:pfam01426   2 TYSVGDFVLVepDDADEPYYVARIEELFEDTKNGKKmVRVQWFYRPEETV-HRAGKAFNKDELFLSDEEDDVPLSAIIGK 80

                          90       100
                  ....*....|....*....|....*...
gi 723742243  157 AIVLTPGDYDKyiSLLRKILPSGVYVCS 184
Cdd:pfam01426  81 CSVLHKSDLES--LDPYKIKEPDDFFCE 106
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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