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Conserved domains on  [gi|723698052|ref|XP_010320777|]
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putative late blight resistance protein homolog R1A-10 [Solanum lycopersicum]

Protein Classification

NB-ARC domain-containing protein( domain architecture ID 705871)

NB-ARC domain-containing protein

CATH:  3.40.50.300
PubMed:  9545207

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
NB-ARC super family cl26397
NB-ARC domain;
3-150 3.11e-25

NB-ARC domain;


The actual alignment was detected with superfamily member pfam00931:

Pssm-ID: 395745 [Multi-domain]  Cd Length: 245  Bit Score: 104.77  E-value: 3.11e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723698052    3 RERLMARRFLIVLDDIWEGKAWDTLKLYLgSNYGKGSRVMVTTRNEKLAMYMRQRTDPYSLPFLNDEKSWELLQKKVFQG 82
Cdd:pfam00931  94 RRALLTKRFLLVLDDVWDEEDWDKIGIPL-PDRENGCRVLLTTRSEEVAGRVGGPSDPHEVELLEPDEAWELFENKVFPK 172
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 723698052   83 ENCPLE-LSNVGPLVAKKCRGLPSLIIMIAGILSSKKKEaDLWLKVAYDICSHAFETKMSLKTIQS----SYD 150
Cdd:pfam00931 173 TLGECElLEDVAKEIVEKCRGLPLALKVLGGLLSCKKTV-EEWKHVYDVLQSELKSNSYSLNSVRSilqlSYE 244
 
Name Accession Description Interval E-value
NB-ARC pfam00931
NB-ARC domain;
3-150 3.11e-25

NB-ARC domain;


Pssm-ID: 395745 [Multi-domain]  Cd Length: 245  Bit Score: 104.77  E-value: 3.11e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723698052    3 RERLMARRFLIVLDDIWEGKAWDTLKLYLgSNYGKGSRVMVTTRNEKLAMYMRQRTDPYSLPFLNDEKSWELLQKKVFQG 82
Cdd:pfam00931  94 RRALLTKRFLLVLDDVWDEEDWDKIGIPL-PDRENGCRVLLTTRSEEVAGRVGGPSDPHEVELLEPDEAWELFENKVFPK 172
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 723698052   83 ENCPLE-LSNVGPLVAKKCRGLPSLIIMIAGILSSKKKEaDLWLKVAYDICSHAFETKMSLKTIQS----SYD 150
Cdd:pfam00931 173 TLGECElLEDVAKEIVEKCRGLPLALKVLGGLLSCKKTV-EEWKHVYDVLQSELKSNSYSLNSVRSilqlSYE 244
 
Name Accession Description Interval E-value
NB-ARC pfam00931
NB-ARC domain;
3-150 3.11e-25

NB-ARC domain;


Pssm-ID: 395745 [Multi-domain]  Cd Length: 245  Bit Score: 104.77  E-value: 3.11e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723698052    3 RERLMARRFLIVLDDIWEGKAWDTLKLYLgSNYGKGSRVMVTTRNEKLAMYMRQRTDPYSLPFLNDEKSWELLQKKVFQG 82
Cdd:pfam00931  94 RRALLTKRFLLVLDDVWDEEDWDKIGIPL-PDRENGCRVLLTTRSEEVAGRVGGPSDPHEVELLEPDEAWELFENKVFPK 172
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 723698052   83 ENCPLE-LSNVGPLVAKKCRGLPSLIIMIAGILSSKKKEaDLWLKVAYDICSHAFETKMSLKTIQS----SYD 150
Cdd:pfam00931 173 TLGECElLEDVAKEIVEKCRGLPLALKVLGGLLSCKKTV-EEWKHVYDVLQSELKSNSYSLNSVRSilqlSYE 244
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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