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Conserved domains on  [gi|723693436|ref|XP_010320008|]
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pentatricopeptide repeat-containing protein At2g36730 [Solanum lycopersicum]

Protein Classification

pentatricopeptide repeat-containing protein( domain architecture ID 1000585)

pentatricopeptide repeat (PPR)-containing protein may form anti-parallel alpha helices and bind single-stranded RNA in a sequence-specific and modular manner

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PLN03077 super family cl33629
Protein ECB2; Provisional
 79-457 4.99e-86

Protein ECB2; Provisional


The actual alignment was detected with superfamily member PLN03077:

Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 281.35  E-value: 4.99e-86
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723693436  79 WNILIRNYAKH---SEAIRFFVEMRRSGVVSDEFTYPFLFKACSSFMGLKEGKQIHCDVIKMGICKNVYVQNTLIYFYGS 155
Cdd:PLN03077 357 WTAMISGYEKNglpDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSK 436

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723693436 156 CNKIMEAYKVFDVMPLRTVVSWNSIISACVESCWYYDAIEIFRLMrKCGVRPDETTMVILLSVCAELGDLSLGKWIHCQV 235
Cdd:PLN03077 437 CKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQM-LLTLKPNSVTLIAALSACARIGALMCGKEIHAHV 515

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723693436 236 IEQGMYVNCQLGTSLVDMYAKCGAVDYARLIFDrIGERNVWTWSAMILGSAQHGFAAQALELFWKMKDCSVKPNFVSFLG 315
Cdd:PLN03077 516 LRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFN-SHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFIS 594

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723693436 316 VLCACSHVGMVEEGYRLFQEMETLHSIKPMMAHYGAMVDILSRAGRLEEAHKFILDMPIEADAVIWRTLLSACHIHDiSV 395
Cdd:PLN03077 595 LLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHR-HV 673

                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 723693436 396 DtgVGEKVRKRLLELEPKRSGNLVMLANKYAETGLWDKAATLRRGMKERRLKKIAGESCVSV 457
Cdd:PLN03077 674 E--LGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEV 733
 
Name Accession Description Interval E-value
PLN03077 PLN03077
Protein ECB2; Provisional
 79-457 4.99e-86

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 281.35  E-value: 4.99e-86
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723693436  79 WNILIRNYAKH---SEAIRFFVEMRRSGVVSDEFTYPFLFKACSSFMGLKEGKQIHCDVIKMGICKNVYVQNTLIYFYGS 155
Cdd:PLN03077 357 WTAMISGYEKNglpDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSK 436

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723693436 156 CNKIMEAYKVFDVMPLRTVVSWNSIISACVESCWYYDAIEIFRLMrKCGVRPDETTMVILLSVCAELGDLSLGKWIHCQV 235
Cdd:PLN03077 437 CKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQM-LLTLKPNSVTLIAALSACARIGALMCGKEIHAHV 515

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723693436 236 IEQGMYVNCQLGTSLVDMYAKCGAVDYARLIFDrIGERNVWTWSAMILGSAQHGFAAQALELFWKMKDCSVKPNFVSFLG 315
Cdd:PLN03077 516 LRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFN-SHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFIS 594

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723693436 316 VLCACSHVGMVEEGYRLFQEMETLHSIKPMMAHYGAMVDILSRAGRLEEAHKFILDMPIEADAVIWRTLLSACHIHDiSV 395
Cdd:PLN03077 595 LLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHR-HV 673

                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 723693436 396 DtgVGEKVRKRLLELEPKRSGNLVMLANKYAETGLWDKAATLRRGMKERRLKKIAGESCVSV 457
Cdd:PLN03077 674 E--LGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEV 733
E_motif pfam20431
E motif; This entry represents the E motif found in plant pentatricopeptide repeat (PPR) ...
 396-455 2.52e-10

E motif; This entry represents the E motif found in plant pentatricopeptide repeat (PPR) proteins which contain a DYW deaminase domain. The DYW domain is required for RNA editing, a process that deaminates specific cytidines to uridines. This motif, together with the E+ motif, precedes the DYW domain and, although their role is not clear, they are essential in the RNA editing reaction. The E/E+ motifs may contain two degenerate PPR motifs that could be involved in RNA or protein binding.


Pssm-ID: 466580 [Multi-domain]  Cd Length: 63  Bit Score: 56.01  E-value: 2.52e-10
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 723693436  396 DTGVGEKVRKRLLELEPKRSGNLVMLANKYAETGLWDKAATLRRGMKERRLKKIAGESCV 455
Cdd:pfam20431   3 NVELAEKAANILLELEKTNDGNYTLLSNIYAYAGRWKDVERIRKLMKSSGIKKRPGCSWI 62
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 175-209 6.14e-05

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 40.13  E-value: 6.14e-05
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 723693436  175 VSWNSIISACVESCWYYDAIEIFRLMRKCGVRPDE 209
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
 
Name Accession Description Interval E-value
PLN03077 PLN03077
Protein ECB2; Provisional
 79-457 4.99e-86

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 281.35  E-value: 4.99e-86
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723693436  79 WNILIRNYAKH---SEAIRFFVEMRRSGVVSDEFTYPFLFKACSSFMGLKEGKQIHCDVIKMGICKNVYVQNTLIYFYGS 155
Cdd:PLN03077 357 WTAMISGYEKNglpDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSK 436

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723693436 156 CNKIMEAYKVFDVMPLRTVVSWNSIISACVESCWYYDAIEIFRLMrKCGVRPDETTMVILLSVCAELGDLSLGKWIHCQV 235
Cdd:PLN03077 437 CKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQM-LLTLKPNSVTLIAALSACARIGALMCGKEIHAHV 515

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723693436 236 IEQGMYVNCQLGTSLVDMYAKCGAVDYARLIFDrIGERNVWTWSAMILGSAQHGFAAQALELFWKMKDCSVKPNFVSFLG 315
Cdd:PLN03077 516 LRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFN-SHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFIS 594

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723693436 316 VLCACSHVGMVEEGYRLFQEMETLHSIKPMMAHYGAMVDILSRAGRLEEAHKFILDMPIEADAVIWRTLLSACHIHDiSV 395
Cdd:PLN03077 595 LLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHR-HV 673

                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 723693436 396 DtgVGEKVRKRLLELEPKRSGNLVMLANKYAETGLWDKAATLRRGMKERRLKKIAGESCVSV 457
Cdd:PLN03077 674 E--LGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEV 733
PLN03081 PLN03081
pentatricopeptide (PPR) repeat-containing protein; Provisional
 79-457 1.65e-82

pentatricopeptide (PPR) repeat-containing protein; Provisional


Pssm-ID: 215563 [Multi-domain]  Cd Length: 697  Bit Score: 268.28  E-value: 1.65e-82
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723693436  79 WNILIR---NYAKHSEAIRFFVEMRRSGVVSDEFTYPFLFKACSSFMGLKEGKQIHCDVIKMGICKNVYVQNTLIYFYGS 155
Cdd:PLN03081 192 WGTIIGglvDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSK 271

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723693436 156 CNKIMEAYKVFDVMPLRTVVSWNSIISACVESCWYYDAIEIFRLMRKCGVRPDETTMVILLSVCAELGDLSLGKWIHCQV 235
Cdd:PLN03081 272 CGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGL 351

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723693436 236 IEQGMYVNCQLGTSLVDMYAKCGAVDYARLIFDRIGERNVWTWSAMILGSAQHGFAAQALELFWKMKDCSVKPNFVSFLG 315
Cdd:PLN03081 352 IRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLA 431

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723693436 316 VLCACSHVGMVEEGYRLFQEMETLHSIKPMMAHYGAMVDILSRAGRLEEAHKFILDMPIEADAVIWRTLLSACHIHDisv 395
Cdd:PLN03081 432 VLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHK--- 508

                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 723693436 396 DTGVGEKVRKRLLELEPKRSGNLVMLANKYAETGLWDKAATLRRGMKERRLKKIAGESCVSV 457
Cdd:PLN03081 509 NLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEV 570
PLN03077 PLN03077
Protein ECB2; Provisional
 71-388 1.03e-34

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 137.67  E-value: 1.03e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723693436  71 SQNSSNSWWNILIRNYAKH---SEAIRFFVEMRRSGVVSDEFTYPFLFKACSSFMGLKEGKQIHCDVIKMGICKNVYVQN 147
Cdd:PLN03077  46 SSSSSTHDSNSQLRALCSHgqlEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGN 125

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723693436 148 TLIYFYGSCNKIMEAYKVFDVMPLRTVVSWNSIISACVESCWYYDAIEIFRLMRKCGVRPDETTMVILLSVCAELGDLSL 227
Cdd:PLN03077 126 AMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLAR 205

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723693436 228 GKWIHCQVIEQGMYVNCQLGTSLVDMYAKCGAVDYARLIFDRIGERNVWTWSAMILGSAQHGFAAQALELFWKMKDCSVK 307
Cdd:PLN03077 206 GREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVD 285

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723693436 308 PNFVSFLGVLCACSHVGMVeegyRLFQEMETLhSIKPM----MAHYGAMVDILSRAGRLEEAHKFILDMPIEaDAVIWRT 383
Cdd:PLN03077 286 PDLMTITSVISACELLGDE----RLGREMHGY-VVKTGfavdVSVCNSLIQMYLSLGSWGEAEKVFSRMETK-DAVSWTA 359


                 ....*
gi 723693436 384 LLSAC 388
Cdd:PLN03077 360 MISGY 364
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 192-365 1.69e-17

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 85.70  E-value: 1.69e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723693436  192 DAIEIFRLMRKcgvrPDETTMVILLSVCAELGDLSLGKWIHCQVIEQGMYVNCQLGTSLVDMYAKCGAVDYARLIFDRIG 271
Cdd:PLN03218  424 EAFRFAKLIRN----PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMV 499

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723693436  272 ----ERNVWTWSAMILGSAQHGFAAQALELFWKMKDCSVKPNFVSFLGVLCACSHVGMVEEGYRLFQEM--ETlHSIKPM 345
Cdd:PLN03218  500 nagvEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMkaET-HPIDPD 578

                         170       180
                  ....*....|....*....|
gi 723693436  346 MAHYGAMVDILSRAGRLEEA 365
Cdd:PLN03218  579 HITVGALMKACANAGQVDRA 598
E_motif pfam20431
E motif; This entry represents the E motif found in plant pentatricopeptide repeat (PPR) ...
 396-455 2.52e-10

E motif; This entry represents the E motif found in plant pentatricopeptide repeat (PPR) proteins which contain a DYW deaminase domain. The DYW domain is required for RNA editing, a process that deaminates specific cytidines to uridines. This motif, together with the E+ motif, precedes the DYW domain and, although their role is not clear, they are essential in the RNA editing reaction. The E/E+ motifs may contain two degenerate PPR motifs that could be involved in RNA or protein binding.


Pssm-ID: 466580 [Multi-domain]  Cd Length: 63  Bit Score: 56.01  E-value: 2.52e-10
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 723693436  396 DTGVGEKVRKRLLELEPKRSGNLVMLANKYAETGLWDKAATLRRGMKERRLKKIAGESCV 455
Cdd:pfam20431   3 NVELAEKAANILLELEKTNDGNYTLLSNIYAYAGRWKDVERIRKLMKSSGIKKRPGCSWI 62
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 79-118 1.65e-06

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 44.66  E-value: 1.65e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 723693436   79 WNILIRNYAKH---SEAIRFFVEMRRSGVVSDEFTYPFLFKAC 118
Cdd:pfam13041   6 YNTLINGYCKKgkvEEAFKLFNEMKKRGVKPNVYTYTILINGL 48
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 96-388 1.69e-06

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 50.65  E-value: 1.69e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723693436   96 FVEMRRSGVVSDEFTYPFLFKACSsfmglKEGkQIHCDVIKMGI--CKNV----YVQNTLIYFYGSCNKIMEAYKVFDVM 169
Cdd:PLN03218  495 FHEMVNAGVEANVHTFGALIDGCA-----RAG-QVAKAFGAYGImrSKNVkpdrVVFNALISACGQSGAVDRAFDVLAEM 568

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723693436  170 PLRTV------VSWNSIISACVESCWYYDAIEIFRLMRKCGVRPDETTMVILLSVCAELGDLslgkwihcqvieqgmyvn 243
Cdd:PLN03218  569 KAETHpidpdhITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDW------------------ 630

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723693436  244 cqlgtslvdmyakcgavDYARLIFDRIGERNVWT----WSAMILGSAQHGFAAQALELFWKMKDCSVKPNFVSFLGVLCA 319
Cdd:PLN03218  631 -----------------DFALSIYDDMKKKGVKPdevfFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGA 693

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 723693436  320 CSHVGMVEEGYRLFQEMETLhSIKPMMAHYGAMVDILSRAGRLEEAHKFILDMP---IEADAVIWRTLLSAC 388
Cdd:PLN03218  694 CSNAKNWKKALELYEDIKSI-KLRPTVSTMNALITALCEGNQLPKALEVLSEMKrlgLCPNTITYSILLVAS 764
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 172-220 1.84e-06

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 44.66  E-value: 1.84e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 723693436  172 RTVVSWNSIISACVESCWYYDAIEIFRLMRKCGVRPDETTMVILLSVCA 220
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLC 49
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 175-209 6.14e-05

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 40.13  E-value: 6.14e-05
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 723693436  175 VSWNSIISACVESCWYYDAIEIFRLMRKCGVRPDE 209
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 92-281 1.39e-04

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 44.48  E-value: 1.39e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723693436   92 AIRFFVEMRRSGVVSDEFTYPFLFKACSSFMGLKEGKQIHCDVIKMGICKNVYVQNTLIyfyGSC------NKIMEAYKV 165
Cdd:PLN03218  633 ALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLM---GACsnaknwKKALELYED 709

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723693436  166 FDVMPLR-TVVSWNSIISACVESCWYYDAIEIFRLMRKCGVRPDETTMVILLSVCAELGDLSLGKWIHCQVIEQGMYVN- 243
Cdd:PLN03218  710 IKSIKLRpTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNl 789

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 723693436  244 --CQLGTSL-VDMYAKCGAVDYARLIFD--RIGERNVWTWSAM 281
Cdd:PLN03218  790 vmCRCITGLcLRRFEKACALGEPVVSFDsgRPQIENKWTSWAL 832
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 182-344 3.29e-04

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 43.33  E-value: 3.29e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723693436  182 SACVESC-----WYYdAIEIFRLMRKCGVRPDETTMVILLSVCAELGDLSLGKWIHCQVIEQGMyvncQLGT----SLvd 252
Cdd:PLN03218  618 TIAVNSCsqkgdWDF-ALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGI----KLGTvsysSL-- 690

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723693436  253 MYAKCGAVDY--ARLIFDRIG----ERNVWTWSAMILGSAQHGFAAQALELFWKMKDCSVKPNFVSFLGVLCACSHVGMV 326
Cdd:PLN03218  691 MGACSNAKNWkkALELYEDIKsiklRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDA 770

                         170
                  ....*....|....*...
gi 723693436  327 EEGYRLFQEMETlHSIKP 344
Cdd:PLN03218  771 DVGLDLLSQAKE-DGIKP 787
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 175-205 1.45e-03

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 35.90  E-value: 1.45e-03
                          10        20        30
                  ....*....|....*....|....*....|.
gi 723693436  175 VSWNSIISACVESCWYYDAIEIFRLMRKCGV 205
Cdd:pfam01535   1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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