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Conserved domains on  [gi|712042113|gb|AIW64104|]
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NADH dehydrogenase subunit 2 (mitochondrion) [Microcebus margotmarshae]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475899)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-349 6.80e-156

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 440.82  E-value: 6.80e-156
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042113   1 MKPPILMIIMMTIFTGTMLTMISSHWLLIWIGLEINMLSIIPILTKNPKPRSTEAATKYFLTQATASMLLMFTIVFNAMH 80
Cdd:MTH00105   1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042113  81 SGQWTITNMdsNNMLISFTMIIALTMKLGMAPFHFWVPEVTQGVSLMTGMLLLTWQKLAPISIMIQMFPSINHNILMLIA 160
Cdd:MTH00105  81 SGQWTITKL--TNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLA 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042113 161 LLSILAGGWGGLNQTQLRKILAYSSIAHMGWMMTILMFCPSMTMLNLFIYLMLTITMFTMLNMNMNTTTLTLSNLWSKSP 240
Cdd:MTH00105 159 ILSILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTP 238

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042113 241 TITTMILVSLLSLGGLPPLTGFLPKWLIIQELTKNNNIIVATVMAIVALLNLYFYMRLIYSTSLTLFPTPNNIKMKWRFK 320
Cdd:MTH00105 239 LMTSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQFE 318

                        330       340
                 ....*....|....*....|....*....
gi 712042113 321 LKKQSLLLSPLIILSTLSLPLSPMFSTLN 349
Cdd:MTH00105 319 NTKPMTLLPTLIILSTMLLPLTPMLSILE 347
 
Name Accession Description Interval E-value
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-349 6.80e-156

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 440.82  E-value: 6.80e-156
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042113   1 MKPPILMIIMMTIFTGTMLTMISSHWLLIWIGLEINMLSIIPILTKNPKPRSTEAATKYFLTQATASMLLMFTIVFNAMH 80
Cdd:MTH00105   1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042113  81 SGQWTITNMdsNNMLISFTMIIALTMKLGMAPFHFWVPEVTQGVSLMTGMLLLTWQKLAPISIMIQMFPSINHNILMLIA 160
Cdd:MTH00105  81 SGQWTITKL--TNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLA 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042113 161 LLSILAGGWGGLNQTQLRKILAYSSIAHMGWMMTILMFCPSMTMLNLFIYLMLTITMFTMLNMNMNTTTLTLSNLWSKSP 240
Cdd:MTH00105 159 ILSILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTP 238

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042113 241 TITTMILVSLLSLGGLPPLTGFLPKWLIIQELTKNNNIIVATVMAIVALLNLYFYMRLIYSTSLTLFPTPNNIKMKWRFK 320
Cdd:MTH00105 239 LMTSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQFE 318

                        330       340
                 ....*....|....*....|....*....
gi 712042113 321 LKKQSLLLSPLIILSTLSLPLSPMFSTLN 349
Cdd:MTH00105 319 NTKPMTLLPTLIILSTMLLPLTPMLSILE 347
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 8-300 6.19e-26

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 107.89  E-value: 6.19e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042113   8 IIMMTIFTGTMLTMISSHWLLIWIGLEINMLS---IIPILTKNPkpRSTEAATKYFLTQATASMLLMF----------TI 74
Cdd:COG1007  106 ALLLFATLGMMLMASANDLLTLFLGLELLSLSlyvLVAFRRDDR--RSSEAALKYFLLGALSSGFLLYgisllygatgSL 183

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042113  75 VFNAMHSGqwtITNMDSNNMLISFT---MIIALTMKLGMAPFHFWVPEVTQGVSLMTGMLLLTWQKLAPIS----IMIQM 147
Cdd:COG1007  184 NLAGIAAA---LAAGGANSPLLLLGlvlVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAallrLLVEA 260

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042113 148 FPSINH---NILMLIALLSILAGGWGGLNQTQLRKILAYSSIAHMGWMMTILMFCPSM----TMLNLFIYLMLTITMFTM 220
Cdd:COG1007  261 FPGLAAdwqLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLgvsaALFYLLAYLFMNLGAFAV 340

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042113 221 LNM----NMNTTTLT-LSNLWSKSPTITTMILVSLLSLGGLPPLTGFLPKWLIIQELTKNNNIIVATVMAIVALLNLYFY 295
Cdd:COG1007  341 ILLlsrkGGEAEEIEdLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYY 420


                 ....*
gi 712042113 296 MRLIY 300
Cdd:COG1007  421 LRVVK 425
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 8-299 2.10e-25

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 106.19  E-value: 2.10e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042113    8 IIMMTIFTGTMLTMISSHWLLIWIGLEINMLSI-IPILTKNPKPRSTEAATKYFLTQATASMLLMF----------TIVF 76
Cdd:TIGR01770 106 ILLLFALLGIFLLVSSNDLLSIYLGLELQSLCFyVLAGLKRKSRFSTEAGLKYFILGAFSSGLLLFgisliygftgSLNF 185

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042113   77 NAMHSGQWTITNMDSNNMLISFTMIIALTMKLGMAPFHFWVPEVTQGVSLMTGMLLLTWQKLAPISIMIQMFPSI----- 151
Cdd:TIGR01770 186 EDLLLFLSNGMLNISLLLLGIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLFLYIlfgfs 265

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042113  152 --NHNILMLIALLSILAGGWGGLNQTQLRKILAYSSIAHMGWMMTILMFCPSMTMLNLFIYLMLTITM----FTML---- 221
Cdd:TIGR01770 266 eaWQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAVLFYIFIYALMslgaFGVLsllr 345

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042113  222 --NMNMNTTTLTLSNLWSKSPTITTMILVSLLSLGGLPPLTGFLPKWLIIQELTKNNNIIVATVMAIVALLNLYFYMRLI 299
Cdd:TIGR01770 346 syKDEWIEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-270 8.74e-24

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 98.92  E-value: 8.74e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042113   23 SSHWLLIWIGLEINMLSIIPILTKNPK-PRSTEAATKYFLTQATASMLLMFTIVFNAMHSGQWTITNMD---------SN 92
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGYWGKsPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSkaltgglnsSG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042113   93 NMLISFTMIIALTMKLGMAPFHFWVPEVTQGVSLMTGMLLL-TWQKLAPISIMIQMFPSIN-----HNILMLIALLSILA 166
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAaTLVKAGGYGLIRRSLLYLPsspfiQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042113  167 GGWGGLNQTQLRKILAYSSIAHMGWMMTILMFCPSMTMLNLFIYLMLTITMFTML---------NMNMNTTTLTLSNLWS 237
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYGIQAAIFHLLTHGLFSAGLflcagsviyRRVHTRNIRDYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 712042113  238 KSPTITTMILVSLLSLGGLPPLTGFLPKWLIIQ 270
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
 
Name Accession Description Interval E-value
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-349 6.80e-156

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 440.82  E-value: 6.80e-156
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042113   1 MKPPILMIIMMTIFTGTMLTMISSHWLLIWIGLEINMLSIIPILTKNPKPRSTEAATKYFLTQATASMLLMFTIVFNAMH 80
Cdd:MTH00105   1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042113  81 SGQWTITNMdsNNMLISFTMIIALTMKLGMAPFHFWVPEVTQGVSLMTGMLLLTWQKLAPISIMIQMFPSINHNILMLIA 160
Cdd:MTH00105  81 SGQWTITKL--TNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLA 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042113 161 LLSILAGGWGGLNQTQLRKILAYSSIAHMGWMMTILMFCPSMTMLNLFIYLMLTITMFTMLNMNMNTTTLTLSNLWSKSP 240
Cdd:MTH00105 159 ILSILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTP 238

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042113 241 TITTMILVSLLSLGGLPPLTGFLPKWLIIQELTKNNNIIVATVMAIVALLNLYFYMRLIYSTSLTLFPTPNNIKMKWRFK 320
Cdd:MTH00105 239 LMTSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQFE 318

                        330       340
                 ....*....|....*....|....*....
gi 712042113 321 LKKQSLLLSPLIILSTLSLPLSPMFSTLN 349
Cdd:MTH00105 319 NTKPMTLLPTLIILSTMLLPLTPMLSILE 347
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-348 4.59e-119

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 347.56  E-value: 4.59e-119
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042113   1 MKPPILMIIMMTIFTGTMLTMISSHWLLIWIGLEINMLSIIPILTKNPKPRSTEAATKYFLTQATASMLLMFTIVFNAMH 80
Cdd:MTH00135   1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042113  81 SGQWTITNMdsNNMLISFTMIIALTMKLGMAPFHFWVPEVTQGVSLMTGMLLLTWQKLAPISIMIQMFPSiNHNILMLIA 160
Cdd:MTH00135  81 TGQWDIQQM--SHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLG 157

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042113 161 LLSILAGGWGGLNQTQLRKILAYSSIAHMGWMMTILMFCPSMTMLNLFIYLMLTITMFTMLNMNMNTTTLTLSNLWSKSP 240
Cdd:MTH00135 158 LTSTLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAP 237

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042113 241 TITTMILVSLLSLGGLPPLTGFLPKWLIIQELTKNNNIIVATVMAIVALLNLYFYMRLIYSTSLTLFPTPNNIKMKWRFK 320
Cdd:MTH00135 238 ALTALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLP 317

                        330       340
                 ....*....|....*....|....*...
gi 712042113 321 LKKQSLLLSPLIILSTLSLPLSPMFSTL 348
Cdd:MTH00135 318 STQLTLPLAISTTATLMLLPLTPAILAL 345
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-343 3.17e-109

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 322.64  E-value: 3.17e-109
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042113   1 MKPPILMIIMMTIFTGTMLTMISSHWLLIWIGLEINMLSIIPILTKNPKPRSTEAATKYFLTQATASMLLMFTIVFNAMH 80
Cdd:MTH00070   1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042113  81 SGQWTITNMDSNNMLISFTmiIALTMKLGMAPFHFWVPEVTQGVSLMTGMLLLTWQKLAPISIMIQMFPSINHNILMLIA 160
Cdd:MTH00070  81 TGEWTIMNMQTPLPTIMLT--IALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMG 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042113 161 LLSILAGGWGGLNQTQLRKILAYSSIAHMGWMMTILMFCPSMTMLNLFIYLMLTITMFTMLNMNMNTTTLTLSNLWSKSP 240
Cdd:MTH00070 159 LLSTLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNP 238

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042113 241 TITTMILVSLLSLGGLPPLTGFLPKWLIIQELTKNNNIIVATVMAIVALLNLYFYMRLIYSTSLTLFPTPNNIKMKWRFK 320
Cdd:MTH00070 239 TLTSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFK 318

                        330       340
                 ....*....|....*....|...
gi 712042113 321 LKKqSLLLSPLIILSTLSLPLSP 343
Cdd:MTH00070 319 NKT-NNLLSLTIILSLMLLPITP 340
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-348 3.84e-108

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 319.85  E-value: 3.84e-108
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042113   1 MKPPILMIIMMTIFTGTMLTMISSHWLLIWIGLEINMLSIIPILTKNPKPRSTEAATKYFLTQATASMLLMFTIVFNAMH 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042113  81 SGQWTITNMdsNNMLISFTMIIALTMKLGMAPFHFWVPEVTQGVSLMTGMLLLTWQKLAPISIMIQMFPSINHNILMLIA 160
Cdd:MTH00112  81 TGQWDITQL--TNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLA 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042113 161 LLSILAGGWGGLNQTQLRKILAYSSIAHMGWMMTILMFCPSMTMLNLFIYLMLTITMFTMLNMNMNTTTLTLSNLWSKSP 240
Cdd:MTH00112 159 ILSTLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSP 238

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042113 241 TITTMILVSLLSLGGLPPLTGFLPKWLIIQELTKNNNIIVATVMAIVALLNLYFYMRLIYSTSLTLFPTPNNIKMKWRFK 320
Cdd:MTH00112 239 TLNTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTK 318

                        330       340
                 ....*....|....*....|....*...
gi 712042113 321 lKKQSLLLSPLIILSTLSLPLSPMFSTL 348
Cdd:MTH00112 319 -PKKNTLTATLTTLSTLLLPLSPMILTI 345
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-348 1.55e-79

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 246.80  E-value: 1.55e-79
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042113   1 MKPPILMIIMMTIFTGTMLTMISSHWLLIWIGLEINMLSIIPILTKNPKPRSTEAATKYFLTQATASMLLMFTIVFNAMH 80
Cdd:MTH00200   1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042113  81 SGQWTITNMDSNNMLISFTMiiALTMKLGMAPFHFWVPEVTQGVSLMTGMLLLTWQKLAPISIMIQMFPSINHNILMLIA 160
Cdd:MTH00200  81 SGQWGISEMLGPLSETLILL--ALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLG 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042113 161 LLSILAGGWGGLNQTQLRKILAYSSIAHMGWMMTILMFCPSMTMLNLFIYLMLTITMFTMLNMNMNTTTLTLSNLWSKSP 240
Cdd:MTH00200 159 LLSVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNP 238

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042113 241 TITTMILVSLLSLGGLPPLTGFLPKWLIIQELTKNNNIIVATVMAIVALLNLYFYMRLIYSTSLTLFPTPNNIKMKWRFK 320
Cdd:MTH00200 239 ILSMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTK 318

                        330       340
                 ....*....|....*....|....*...
gi 712042113 321 LKKqSLLLSPLIILSTLSLPLSPMFSTL 348
Cdd:MTH00200 319 SNS-NLLVGLLLLLSILGLPLTPQLLFL 345
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 1-309 2.09e-77

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 241.37  E-value: 2.09e-77
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042113   1 MKPPILMIIMMTIFTGTMLTMISSHWLLIWIGLEINMLSIIPILTKNPKPRSTEAATKYFLTQATASMLLMFTIVFNAMH 80
Cdd:MTH00041   1 MNRNVLIFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042113  81 SGQWTItnMDSNNMLISFTMIIALTMKLGMAPFHFWVPEVTQGVSLMTGMLLLTWQKLAPISIMIQMFPSINHNILMLIA 160
Cdd:MTH00041  81 SGSWSI--NGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCG 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042113 161 LLSILAGGWGGLNQTQLRKILAYSSIAHMGWMMTILMFCPSMTMLNLFIYLMLTITMFTMLNMNMNTTTLTLSNLWSKSP 240
Cdd:MTH00041 159 ILSVLVGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNP 238

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 712042113 241 TITTMILVSLLSLGGLPPLTGFLPKWLIIQELTKNNNIIVATVMAIVALLNLYFYMRLIYSTSLTLFPT 309
Cdd:MTH00041 239 ISAFLFILSILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQ 307
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-345 2.17e-49

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 168.46  E-value: 2.17e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042113   1 MKPPILMIIMMTIFTGTMLTMISSHWLLIWIGLEINMLSIIPILTKNPKPRSTEAATKYFLTQATASMLLMFTIVFNAMh 80
Cdd:MTH00160   2 MMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML- 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042113  81 sgqwtitNMDSNNMLISFTMIIALTMKLGMAPFHFWVPEVTQGVSLMTGMLLLTWQKLAPISIMIQMFpsiNHNILMLIA 160
Cdd:MTH00160  81 -------NLMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLI---NNNFIIIII 150

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042113 161 LLSILAGGWGGLNQTQLRKILAYSSIAHMGWMMTILMFCPSMTMLNLFIYLMLTITMFTMLNMNMNTTTLTLSNLWSKSP 240
Cdd:MTH00160 151 ILSAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSK 230

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042113 241 TITTMILVSLLSLGGLPPLTGFLPKWLIIQELTKNNNIIVATVMAIVALLNLYFYMRLIYSTSLTLFptpNNIKMKWRFK 320
Cdd:MTH00160 231 KIKFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNY---NKNKWNLKKK 307

                        330       340
                 ....*....|....*....|....*
gi 712042113 321 LKKQSLLLSPLIILSTLSLPLSPMF 345
Cdd:MTH00160 308 KNKFSLILNFLSFISLFGLILSSLL 332
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 1-321 1.73e-46

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 160.82  E-value: 1.73e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042113   1 MKPPILMIIMMTIFTGTMLTMISSHWLLIWIGLEINMLSIIPILTKNPKPRSTEAATKYFLTQATASMLLMFTIVfnamh 80
Cdd:MTH00144   1 MSSPSNLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSL----- 75

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042113  81 sgqwtITNMDSNNMLISFTMIIALTMKLGMAPFHFWVPEVTQGVSLMTGMLLLTWQKLAPISIMIQMFPSINH-NILMLI 159
Cdd:MTH00144  76 -----IMYNLSFSWFSMSLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLaYLLCVI 150

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042113 160 ALLSILAGGWGGLNQTQLRKILAYSSIAHMGWMMTILMFCPSMTMLNLFIYLMLTITMFTMLNMNMNTTTLTLSNLwSKS 239
Cdd:MTH00144 151 SVLSALVGSIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKDLGSL-KPS 229

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042113 240 PTITTMILVSLLSLGGLPPLTGFLPKWLIIQELTKNNNIIVATVMAIVALLNLYFYMRLIYSTSLTLFPTPNNIKMKWRF 319
Cdd:MTH00144 230 YKTGLSIISLLLSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFLSSSKSKKSNSSKVLN 309


                 ..
gi 712042113 320 KL 321
Cdd:MTH00144 310 SS 311
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 1-301 2.86e-44

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 154.94  E-value: 2.86e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042113   1 MKPPILMIIMMTIFTGTMLTMISSHWLLIWIGLEINMLSIIPILTKNPKPRSTEAATKYFLTQATASMLLMFTIVFNAMH 80
Cdd:MTH00011   3 STFPTMFLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGMTMMWSF 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042113  81 SGQWTITNmdsnnmliSFTMIIALTMKLGMAPFHFWVPEVTQGVSLMTGMLLLTWQKLAPISIMIQMFPSINHNILMLIA 160
Cdd:MTH00011  83 PSLLKNIT--------ALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMA 154

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042113 161 LLSILAGGWGGLNQTQLRKILAYSSIAHMGWMMTILMFCPSMTMLNLFIYLMLTITMFTMLNMNMNTTTLTLSNLWSKSP 240
Cdd:MTH00011 155 AMSALAGGLGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQ 234

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 712042113 241 TITTMILVSLLSLGGLPPLTGFLPKWLIIQELTKNNNIIVATVMAIVALLNLYFYMRLIYS 301
Cdd:MTH00011 235 TTSMSLFIMLLSLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIFN 295
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 7-302 1.82e-35

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 131.33  E-value: 1.82e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042113   7 MIIMMTIFTGTMLTMISSHWLLIWIGLEINMLSIIPILTKNPKPRSTEAATKYFLTQATASMLLMFtivfnamhsGQWTI 86
Cdd:MTH00197   1 FLFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLM---------GGSLS 71

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042113  87 TNMDSNNMLISFTMIIALTMKLGMAPFHFWVPEVTQGVSLMTGMLLLTWQKLAPIsiMIQMFPSINHNILMLIALLSILA 166
Cdd:MTH00197  72 FSNLYLSLLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPL--LILAFNSSSFMGLLICSVLSSLI 149

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042113 167 GGWGGLNQTQLRKILAYSSIAHMGWMMTILMFCPSMTMLNLFIYLMLTITMFTMLNMNMNTTTLTLSNLWSKSPTITTMI 246
Cdd:MTH00197 150 GGIGGMNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFL 229

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 712042113 247 LVSLLSLGGLPPLTGFLPKWLIIQELTKNNNIIVATVMAIVALLNLYFYMRLIYST 302
Cdd:MTH00197 230 GLSFLSLGGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKS 285
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 8-300 6.19e-26

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 107.89  E-value: 6.19e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042113   8 IIMMTIFTGTMLTMISSHWLLIWIGLEINMLS---IIPILTKNPkpRSTEAATKYFLTQATASMLLMF----------TI 74
Cdd:COG1007  106 ALLLFATLGMMLMASANDLLTLFLGLELLSLSlyvLVAFRRDDR--RSSEAALKYFLLGALSSGFLLYgisllygatgSL 183

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042113  75 VFNAMHSGqwtITNMDSNNMLISFT---MIIALTMKLGMAPFHFWVPEVTQGVSLMTGMLLLTWQKLAPIS----IMIQM 147
Cdd:COG1007  184 NLAGIAAA---LAAGGANSPLLLLGlvlVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAallrLLVEA 260

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042113 148 FPSINH---NILMLIALLSILAGGWGGLNQTQLRKILAYSSIAHMGWMMTILMFCPSM----TMLNLFIYLMLTITMFTM 220
Cdd:COG1007  261 FPGLAAdwqLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLgvsaALFYLLAYLFMNLGAFAV 340

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042113 221 LNM----NMNTTTLT-LSNLWSKSPTITTMILVSLLSLGGLPPLTGFLPKWLIIQELTKNNNIIVATVMAIVALLNLYFY 295
Cdd:COG1007  341 ILLlsrkGGEAEEIEdLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYY 420


                 ....*
gi 712042113 296 MRLIY 300
Cdd:COG1007  421 LRVVK 425
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 4-324 8.30e-26

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 107.41  E-value: 8.30e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042113   4 PILMIImmtIFTGTMLTMISSHWLLIWIGLEINMLSI-IPILTKNPKPRSTEAATKYFLTQATASMLLMFTIVFNAMHSG 82
Cdd:MTH00199 100 PILILI---VALGSLLLVSSINWLSIYLAIELQTLTLfILVALKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTG 176

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042113  83 QwtiTNMDSNNMLIS-----FTMIIALTMKLGMAPFHFWVPEVTQGVSLMTGMLLLTWQKLAPISIMIQMFPSINhnILM 157
Cdd:MTH00199 177 E---TSIQGINSILTgdvgkILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTN--VVL 251

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042113 158 LIALLSILAGGWGGLNQTQLRKILAYSSIAHMG---WMMTILMFCP-SMTMLNLFIYLMLTITMFTMLnMNMNTTT---L 230
Cdd:MTH00199 252 ICAVLSIIYGAIGALNQTKIKRLLAYSGIGHMGfilFGVAIGSFESiQASLIYMIIYVIMSICSFSII-LSLKLTKgliV 330

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042113 231 TLSNLWSKSPTITTMILVSLLSLGGLPPLTGFLPKWLIIQELTKNNNIIVATVMAIVALLNLYFYMRLIystSLTLFPTP 310
Cdd:MTH00199 331 EVSGLSRKNPVIALTLALTFLSIAGIPPLAGFLSKWLILLSGVSSGYYLICIIAVLSSVIAGVYYVRVV---QIIYFQAD 407

                        330
                 ....*....|....
gi 712042113 311 NNIkMKWRFKLKKQ 324
Cdd:MTH00199 408 YSI-LIWQKVLKKE 420
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 8-299 2.10e-25

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 106.19  E-value: 2.10e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042113    8 IIMMTIFTGTMLTMISSHWLLIWIGLEINMLSI-IPILTKNPKPRSTEAATKYFLTQATASMLLMF----------TIVF 76
Cdd:TIGR01770 106 ILLLFALLGIFLLVSSNDLLSIYLGLELQSLCFyVLAGLKRKSRFSTEAGLKYFILGAFSSGLLLFgisliygftgSLNF 185

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042113   77 NAMHSGQWTITNMDSNNMLISFTMIIALTMKLGMAPFHFWVPEVTQGVSLMTGMLLLTWQKLAPISIMIQMFPSI----- 151
Cdd:TIGR01770 186 EDLLLFLSNGMLNISLLLLGIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLFLYIlfgfs 265

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042113  152 --NHNILMLIALLSILAGGWGGLNQTQLRKILAYSSIAHMGWMMTILMFCPSMTMLNLFIYLMLTITM----FTML---- 221
Cdd:TIGR01770 266 eaWQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAVLFYIFIYALMslgaFGVLsllr 345

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042113  222 --NMNMNTTTLTLSNLWSKSPTITTMILVSLLSLGGLPPLTGFLPKWLIIQELTKNNNIIVATVMAIVALLNLYFYMRLI 299
Cdd:TIGR01770 346 syKDEWIEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-270 8.74e-24

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 98.92  E-value: 8.74e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042113   23 SSHWLLIWIGLEINMLSIIPILTKNPK-PRSTEAATKYFLTQATASMLLMFTIVFNAMHSGQWTITNMD---------SN 92
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGYWGKsPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSkaltgglnsSG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042113   93 NMLISFTMIIALTMKLGMAPFHFWVPEVTQGVSLMTGMLLL-TWQKLAPISIMIQMFPSIN-----HNILMLIALLSILA 166
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAaTLVKAGGYGLIRRSLLYLPsspfiQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042113  167 GGWGGLNQTQLRKILAYSSIAHMGWMMTILMFCPSMTMLNLFIYLMLTITMFTML---------NMNMNTTTLTLSNLWS 237
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYGIQAAIFHLLTHGLFSAGLflcagsviyRRVHTRNIRDYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 712042113  238 KSPTITTMILVSLLSLGGLPPLTGFLPKWLIIQ 270
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 16-299 2.79e-23

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 98.95  E-value: 2.79e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042113  16 GTMLTMISSHWLLIWIGLEINMLSI-IPILTKNPKPRSTEAATKYFLTQATASMLLMF--TIVFNAMHSGQWTITNMDSN 92
Cdd:MTH00196   5 GILCLISSSNWLSVYLAIELQTLSLfILIAQNRGSGYSAEAGLKYFVLGALSSGLFLFgcALLCGTTGGLHLSYINLVLN 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042113  93 NMLI---------SFTMIIALTMKLGMAPFHFWVPEVTQGVSLMTGMLLLTWQKLAPISIMIQMFPSINhnILMLIALLS 163
Cdd:MTH00196  85 SGQSfssvsvpigYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIGLNVN--ILLIGGLFS 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042113 164 ILAGGWGGLNQTQLRKILAYSSIAHMG---WMMTILMF-CPSMTMLNLFIYLMLTITMFTM-LNMNMNTTTLT-LSNLWS 237
Cdd:MTH00196 163 LFVGAIGALNQTKIKRLLAYSGIGHMGfvlWGIEIGSFeSIQASLVYLFIYIIMSICVFSIiLALNVYKNLIIeFSGLSR 242

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 712042113 238 KSPTITTMILVSLLSLGGLPPLTGFLPKWLIIQELTKNNNIIVATVMAIVALLNLYFYMRLI 299
Cdd:MTH00196 243 RLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRIV 304
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
4-299 8.82e-22

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 95.66  E-value: 8.82e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042113   4 PILMIIMmtifTGTMLTMISS-HWLLIWIGLEINMLSI-IPILTKNPKPRSTEAATKYFLTQATASMLLMF--------- 72
Cdd:PRK05777 106 YLLVLFA----LLGMMVMVSAnDLLTLFLGLELLSLPLyALAALRRDRRRSLEAAIKYFVLGALASGFLLYgmsllygat 181

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042113  73 -TIVFNAMHSgqwTITNMDSNNMLISFT---MIIALTMKLGMAPFHFWVPEVTQGVSLMTGMLLLTWQKLAPISIMIQMF 148
Cdd:PRK05777 182 gSLSFAGIAK---ALADGSGNSLLLLFGlvfLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAVLLRLL 258

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042113 149 -------PSINHNILMLIALLSILAGGWGGLNQTQLRKILAYSSIAHMGWMMTILMFCPSM----TMLNLFIYLMLTITM 217
Cdd:PRK05777 259 vvafgglSEDWQQVLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEgysaVLFYLLAYLFMTLGA 338

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042113 218 FTMLNM----NMNTTTLT-LSNLWSKSPTITTMILVSLLSLGGLPPLTGFLPKWLIIQELTKNNNIIVATVMAIVALLNL 292
Cdd:PRK05777 339 FGVISLlrrkGGEAESISdFAGLSKRSPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGA 418


                 ....*..
gi 712042113 293 YFYMRLI 299
Cdd:PRK05777 419 FYYLRVI 425
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 15-303 2.13e-16

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 79.81  E-value: 2.13e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042113  15 TGTMLTMISSHWLLIWIGLEINMLSIIPILTKNPKPRSTEAATKYFLTQATASMLLMFTIVFNAMHSGQWTITNM----- 89
Cdd:COG0651  118 AGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLaarla 197

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042113  90 --DSNNMLISFTMI-IALTMKLGMAPFHFWVPEV----TQGVS-LMTGMLLltwqKLAPISIM---IQMFPSIN----HN 154
Cdd:COG0651  198 elDPGLLLAAFALLlVGFGIKAALFPLHFWLPDAypaaPSPVSaLLSGLLT----KVGVYAILrvlTLLFGADPalflGT 273

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042113 155 ILMLIALLSILAGGWGGLNQTQLRKILAYSSIAHMGWMMTILMFCPSMTMLNLFIYL---MLTITMFTMLNMNMNTTTLT 231
Cdd:COG0651  274 LLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHLlnhALAKALLFLAAGAIERATGT 353

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 712042113 232 -----LSNLWSKSPTITTMILVSLLSLGGLPPLTGFLPKWLIIQELTKNNNIIVATVMAIVALLNLYFYMRLIYSTS 303
Cdd:COG0651  354 rdldkLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLAYFVRIFGRAQ 430
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 16-193 2.50e-12

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 67.96  E-value: 2.50e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042113  16 GTMLTMISSHWLLIWIGLEINMLSIIPILTKNPKPRST---------EAATKYFLTQATASMLLMFTIVF---------- 76
Cdd:MTH00198 200 GGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGCALyfgftgnegm 279

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042113  77 -NAMHSGQWTITNMDSNNMLISFTMI-IALTMKLGMAPFHFWVPEVTQGVSLMTGMLLLTWQKLAPISIMIQMFpsINHN 154
Cdd:MTH00198 280 lGTILSATLETTNIELRQGSLGYLFItVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVYILLTSLV--ITSK 357

                        170       180       190
                 ....*....|....*....|....*....|....*....
gi 712042113 155 ILMLIALLSILAGGWGGLNQTQLRKILAYSSIAHMGWMM 193
Cdd:MTH00198 358 LLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFIL 396
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
7-299 5.97e-11

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 63.53  E-value: 5.97e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042113   7 MIIMMTIFTGTMLTMISSHWLLIWIGLEinMLSIIP-ILTKNPK--PRSTEAATKYFLTQATASMLLMFTIVFNAMHSGQ 83
Cdd:PRK02504 113 AAILLTATLGGMFLSGATELVMIFISLE--TLSIASyLLTGYMKrdPRSNEAALKYLLIGAASSAIFLYGSSLLYGLSGG 190

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042113  84 WT--------ITNMDSNNMLISFTMIIA-LTMKLGMAPFHFWVPEVTQGVSLMTGMLLLTWQKLA----PISIMIQMFPS 150
Cdd:PRK02504 191 STqlsaialaLITSPSLGLALALVFVIAgIAFKISAVPFHQWTPDVYEGSPTPVVAFLSVGSKAAgfalAIRLLVTAFPS 270

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042113 151 IN---HNILMLIALLSILAGGWGGLNQTQLRKILAYSSIAHMGWMMtILMFCP-----SMTMLNLFIYLMLTITMFTMLN 222
Cdd:PRK02504 271 FDeqwKLLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAGFVM-IGLVAGteagyASMVFYLLAYLFMNLGAFACVI 349

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042113 223 M-NMNTTTLTLSN---LWSKSPTITTMILVSLLSLGGLPPLTGFLPKWLIIQELTKNNNIIVATVMAIVALLNLYFYMRL 298
Cdd:PRK02504 350 LfSLRTGTDQISDyagLYQKDPLLTLGLSLCLLSLGGIPPLAGFFGKIYLFWAGWQAGLYLLVLVGLVTSVISIYYYIRV 429


                 .
gi 712042113 299 I 299
Cdd:PRK02504 430 I 430
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 55-193 6.55e-11

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 63.18  E-value: 6.55e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042113  55 AATKYFLTQATASMLLMFTIVFNAMHSGQWTI-------TNMDSN-NMLISFTMIIALTMKLGMAPFHFWVPEV-----T 121
Cdd:COG1008  162 AAIKFFLYTLAGSLLMLVAILALYFLAGALTFdiaelaaAPLPLTaQLLLFLAFFIAFAVKVPMFPFHTWLPDAhveapT 241

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 712042113 122 QGVSLMTGMLLltwqKLAP---ISIMIQMFPSINH---NILMLIALLSILAGGWGGLNQTQLRKILAYSSIAHMGWMM 193
Cdd:COG1008  242 AGSVLLAGVLL----KMGGyglLRFALPLFPEASAyfaPLLAALGVIGIIYGALVALAQTDLKRLIAYSSVSHMGFVL 315
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 55-193 2.62e-09

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 58.29  E-value: 2.62e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042113  55 AATKYFL-TQAT-----ASMLLMFTIVFNAMHS---GQWTITNMDSN-NMLISFTMIIALTMKLGMAPFHFWVPEV---- 120
Cdd:PRK05846 162 AATKFFLyTLLGsllmlVAIIYLVVVYYNATGTfdiADLLNLPLPPGvQYWLFLAFFIAFAVKMPMFPLHTWLPDAhvqa 241

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042113 121 -TQGVSLMTGMLLltwqKLAP---ISIMIQMFPSINHNILMLIALLSILA---GGWGGLNQTQLRKILAYSSIAHMGWMM 193
Cdd:PRK05846 242 pTAGSVLLAGILL----KMGAyglLRFSLPLFPDASHEFAPIIITLGVIAiiyGALVALAQTDIKKLIAYSSISHMGFVT 317
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 2-193 7.63e-09

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 56.96  E-value: 7.63e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042113   2 KPPILMIIMMTIFTGTMLTMISSHWLLIWIGLEINMLSIIPILTKNPKPRSTEAATKYFLTQATASMLLMFTIVFNAMHS 81
Cdd:PRK12561  85 KPRLFYFLMLVLYSAQIGVFLAQDLLLFFLMWELELVPVYLLISIWGGQKRLYAATKFILYTALASIFILVAGLALALSG 164

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042113  82 GQWT--ITNMDSNNMLISFTM------IIALTMKLGMAPFHFWVP----EVTQGVSLMTGMLLLTWQKLAPISIMIQMFP 149
Cdd:PRK12561 165 DTFTfdLAELGAKSYPLALELllyagfLIAFGVKLPIFPLHTWLPdahgEASAPVSMILAGVLLKMGGYALIRFNVQMLP 244

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*..
gi 712042113 150 SINHNILMLIALLSILAGGWGGLN---QTQLRKILAYSSIAHMGWMM 193
Cdd:PRK12561 245 DAHVYFAPALAILGVVNIIYGALNafaQDNVKRRLAYSSVSHMGFVL 291
ndhB CHL00049
NADH dehydrogenase subunit 2
 51-193 1.78e-08

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 55.78  E-value: 1.78e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042113  51 RSTEAATKYFLTQATASMLLMFTIVFNAMHSGQ----WTITN-MDSNNMLISFTMIIALT-------MKLGMAPFHFWVP 118
Cdd:CHL00049 159 RSNEATMKYLLMGGASSSILVYGFSWLYGLSGGeielQEIVNgLINTQMYNSPGISIALIfitvgigFKLSLAPFHQWTP 238

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042113 119 EVTQGVSLMTGMLLLTWQKLAPISIMIQM----FPSIN---HNILMLIALLSILAGGWGGLNQTQLRKILAYSSIAHMGW 191
Cdd:CHL00049 239 DVYEGSPTPVVAFLSVTSKVAASALATRIfdipFYFSSnewHLLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGY 318


                 ..
gi 712042113 192 MM 193
Cdd:CHL00049 319 VI 320
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 6-193 2.93e-08

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 54.95  E-value: 2.93e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042113    6 LMIIMMTIFTGTMLTMISSHWLLIWIGLEINMLSIIPILTKNPKPRSTEAATKYFLTQATASMLLMFTIVFNA-MHSGQW 84
Cdd:TIGR01972 108 FYALLLLLEAGVIGVFLALDLFLFYVFWEAMLIPMYLLIGVWGGPNRIYAAMKFFLYTLAGSLLMLLAILGLYfLGGGTF 187

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042113   85 TITNMDSNNMLISFTMI------IALTMKLGMAPFHFWVPEV-----TQGVSLMTGMLLltwqKLAPISIM---IQMFPS 150
Cdd:TIGR01972 188 DLLELLNLPLPFGVQTWlflaffIAFAVKVPLFPLHTWLPDAhveapTAGSVILAGVLL----KMGTYGFLrfnLPLFPD 263

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 712042113  151 ---INHNILMLIALLSILAGGWGGLNQTQLRKILAYSSIAHMGWMM 193
Cdd:TIGR01972 264 aslYFAPVLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVL 309
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-300 5.21e-08

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 54.11  E-value: 5.21e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042113  33 LEINMLSIIPILTKNPKPRSTEAATKYFLTQATASMLLMFTIVFNAMHSGqwTITNMDSNNML--------ISFTMIIAL 104
Cdd:PRK08375 135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGVGLLYGVTG--TLNMADLAGALaenptvvtAFGFVLLAL 212

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042113 105 TMKLGMAPFHFWVP----EVTQGVSLMTGMLLLTWQKLAPISIMIQMFP------SINHNILMLIALLSILAGGWGGLNQ 174
Cdd:PRK08375 213 ALKAAVFPLHTWLPraypAAPPVVTALLSGLVTKVAVYALIRIYFTVFGgdfrfaLGLGWLLAVLALLSMLVGSLAALGQ 292

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042113 175 TQLRKILAYSSIAHMGWMMT-ILMFCPSM---TMLNLFIYLMLTITMFT---MLNMNMNTTTLT-LSNLWSKSPTITTMI 246
Cdd:PRK08375 293 DDVKRVLAYSTVSQMGYILLgLALLTPLAlaaGLLHLLHHALMKGALFLaagAIEVTYGTRRLSeLSGLGRRMPLTAAAF 372

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....
gi 712042113 247 LVSLLSLGGLPPLTGFLPKWLIIQELTKNNNIIVATVMAIVALLNLYFYMRLIY 300
Cdd:PRK08375 373 AVASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRIWY 426
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-193 2.44e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 48.94  E-value: 2.44e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042113  33 LEINML-SIIPILTKNPKPRSTEAATKYFLTQATASMLLMFTIvfnAMHSGQWTITNMDSNNMLISFTM----------- 100
Cdd:PRK08376 150 LEIMSIaSYALVAFRNDTWEAIEAGIKYMFVGSLASSMVLLGI---ALLYGQYGTLNMAYLAVKMSENPtvvakialalf 226

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042113 101 IIALTMKLGMAPFHFWVPEV-TQGVSLMTGMLLLTWQ----KLAPISIMIqMFPSINHN----ILMLIALLSILAGGWGG 171
Cdd:PRK08376 227 IAGLAMKSGAVPVHMWLPDAyPAAPSSISAMLLVIKQaglyALARVLFSI-YGPAINLAtvgwVIIILGCLTMFVGVAMA 305

                        170       180
                 ....*....|....*....|..
gi 712042113 172 LNQTQLRKILAYSSIAHMGWMM 193
Cdd:PRK08376 306 VVQKDVKRLLAYHSVSQIGYML 327
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
 17-301 4.87e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 48.27  E-value: 4.87e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042113  17 TMLTMISSHWLLIWIGLEINMLSIIPILTKNPKPRSTEAATKYFLTQATASMLLMF---TIVFNAMHSGQWTITNMDSNN 93
Cdd:PRK06589 129 GVLIALSSDLFTMFVCYELLTISTAFLIGHTRNNISLSGGYKYLKILMISALLLFLpavILIYTKTGNLDFVSGGLFSKN 208

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042113  94 M-LISFTMIIALTMKLGMAPFHFWVPE-----------------VTQGVSLMTGMLLLTWqKLAPISIMIQMFpsinhNI 155
Cdd:PRK06589 209 QsIILLLMFIYGIAKTAIFPVHSWLPAamvahypvsallhavivVKTGLFCIYKILLYIF-GLSYLQRIFAEF-----NW 282

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042113 156 LMLIALLSILAGGWGGLNQTQLRKILAYSSIAHMGW-MMTILMFCP---SMTMLNLFIYLMLTITMF-TMLNMNMNTTTL 230
Cdd:PRK06589 283 LIFIPIVSIFYSSLKALKTDNIKKILAYSTISQLSLaLLSAFILTPkalGAAILHLVSHSFAKICLFySMGSIYSLKKED 362

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 712042113 231 TLSNLWSKS---PTITTMILVSLLSLGGLPPLTGFLPKWLIIQELTKNNNIIVATVMAIV----ALLNLYFYMRLIYS 301
Cdd:PRK06589 363 QVDKLHGTSksfPLISFIISISSLSLIGIPIFSGFISKFLILLAASEQNQPWLSIIVMLVviasSILSALYLLKILSS 440
ND5 MTH00207
NADH dehydrogenase subunit 5; Provisional
 82-288 9.04e-06

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 164753 [Multi-domain]  Cd Length: 572  Bit Score: 47.45  E-value: 9.04e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042113  82 GQWTITNMDSNNM--LISFTMIIALTMKLGMAPFHFWVPEVTQGVSLMTGMLLLTWQKLAPISIMIQMFPSIN-----HN 154
Cdd:MTH00207 165 GHWSITNMWQTDMnnYIALSIMIAAMTKSAQMPFSSWLPAAMAAPTPVSALVHSSTLVTAGVFLLIRFYPFLSstywfNP 244

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042113 155 ILMLIALLSILAGGWGGLNQTQLRKILAYSSIAHMGWMMTILmfcpSMTMLNLFIYLMLTITMF---------TMLNMNM 225
Cdd:MTH00207 245 ALLLTASLTMLMAGLSAMTECDMKKIIALSTLSQLGVMMASL----GLGMPKLALFHLITHALFkallfvcagSLIHSHH 320

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 712042113 226 NTTTL-TLSNLWSKSPTITTMILVSLLSLGGLPPLTGFLPKWLIIQELTKNNNIIVATVMAIVA 288
Cdd:MTH00207 321 HSQDLrTMGNLTNQMPLTTSCLLIANLALCGSPFLSGFYSKDLILESSLFYPHNSLMILMIFLA 384
NADH_dehy_S2_C pfam06444
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ...
 293-343 1.73e-05

NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.


Pssm-ID: 461914 [Multi-domain]  Cd Length: 51  Bit Score: 41.47  E-value: 1.73e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 712042113  293 YFYMRLIYSTSLTLFPTPNNIKMKWRFKLKKQSLLLSPLIILSTLSLPLSP 343
Cdd:pfam06444   1 FFYLRLSYSTTLTLFPNTNNSKMKWRFNSTKNTLLLPTLTTLSILLLPLTP 51
ND4 MTH00217
NADH dehydrogenase subunit 4; Provisional
 102-213 2.70e-05

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214462 [Multi-domain]  Cd Length: 482  Bit Score: 45.81  E-value: 2.70e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042113 102 IALTMKLGMAPFHFWVPEV-----TQGVSLMTGMLLltwqKLAP---ISIMIQMFPSINHNILMLIALLSILAGGWGGLN 173
Cdd:MTH00217 214 LSLAIKIPKIPFHIWLPQAhveapVAGSVILAGVLL----KLGGygfIRFSWPLLPEASEYFSPLIQTLSLLAIIYGSLT 289

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 712042113 174 ---QTQLRKILAYSSIAHMGwMMTILMFCPSMTMLNLFIYLML 213
Cdd:MTH00217 290 tcrQVDLKRIIAYSSVAHMG-LVTLGIFSHTIQGLVAAIFLML 331
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 10-192 3.35e-05

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 45.31  E-value: 3.35e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042113  10 MMTIFTGTM-LTMISSHWLLIWIGLEINMLSIIPILTKNPKPRSTEAATKYFL------TQATASMLLMFTIVFNAMHSG 82
Cdd:PRK06458 113 MYQLFLFTMlLALTSNNLGLMWVAIEATTLSSALLVGIYRTRASLEAAWKYIIicsvgvAFALFGTILVYANAATVMGDG 192

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042113  83 Q----WTITN-----MDSNNMLISFTMI-IALTMKLGMAPFHFWVP----EVTQGVSLMTGMLLLTWQKLAPISIMIQMF 148
Cdd:PRK06458 193 EmailWTELLkhaslLDPTLMKLAFVFLlIGFGTKVGLFPMHAWLPdahsEAPSPVSALLSGVLLNVALYAVLRYYILID 272

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*...
gi 712042113 149 PSINH----NILMLIALLSILAGGWGGLNQTQLRKILAYSSIAHMGWM 192
Cdd:PRK06458 273 AAIGSdfpgRLLLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLI 320
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 49-301 4.72e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 44.96  E-value: 4.72e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042113  49 KPRSTEAATKYFLTQATASMLLMFTIVF--------------NAMHSGQWTITNMDSNNMLISFTMIIAL-----TMKLG 109
Cdd:PRK12667 159 RGDAVEAAIKYALIGAVGTTLYFLALAFlyatfgtlnmadlsAKIRGLSFPLTGGLAGNPPLALGVALALalwafTIKAA 238

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042113 110 MAPFHFWVPEV----TQGVSLMTGMLLLTWQKLAPISIMIQMFPSINH---------NILMLIALLSILAGGWGGLNQTQ 176
Cdd:PRK12667 239 IFPNHFWLPDAhpaaPSPVSAMLSGLVVNVGAYAIIRFLYTIFGISPSlidfraalsPILIILGAVSAIIGALMMVVQKD 318

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042113 177 LRKILAYSSIAHMGW-MMTILMFCPsmtmlnlfiyLMLTITMFTMLNMNMNTTTLTLSN-----------------LWSK 238
Cdd:PRK12667 319 VKRLLAYSTISHMGYiFMGIGIGTQ----------LGLAAALFHIINHAIAKSLLFLASgvfihaagtrdidelagLGRK 388

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 712042113 239 SPTITTMILVSLLSLGGLPPLTGFLPKWLIIQELTKNNNIIVATVMAIVALLNLYFYMRLIYS 301
Cdd:PRK12667 389 MPIASFAFLIGALSLVGIPPLNGFFSKLLLFNALLESGFYLPALVLLIASAISLVGYFRAWYS 451
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 17-194 6.85e-05

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 44.36  E-value: 6.85e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042113  17 TMLTMISSHWLLIWIGLEIN-MLSIIPILTKNPKpRSTEAATKYFLTQATA------SMLLMFTIVFNAMHSG--QWT-- 85
Cdd:PRK08676 115 ITFAFFSDNLALFWIFAELTtVFSAMLIAILSAR-ENIDAALKYIFIASTAmifafiGLIFLFSLTRQALGTGtlNWTel 193

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042113  86 ---ITNMDSNNMLISFT-MIIALTMKLGMAPFHFWVPEV-TQGVSLMTGMLLLTWQKLAPISImIQMFP--------SIN 152
Cdd:PRK08676 194 aahASLLSPSVLGASFLfIFIGFLAKSGLVPFHTWLPAAyAKAPSVVSALLSGTVLNIGIYGI-LRLSAllrqsgaaEQF 272

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|..
gi 712042113 153 HNILMLIALLSILAGGWGGLNQTQLRKILAYSSIAHMGWMMT 194
Cdd:PRK08676 273 SNVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLL 314
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
91-193 9.48e-05

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 43.92  E-value: 9.48e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042113  91 SNNMLISFTMIIALTMKLGMAPFHFWVP----EVTQGVSLMTGMLLLTWQKLAPISIMIQMFPSINHNI---LMLIALLS 163
Cdd:PRK06473 202 STQLLLLAPILVGFGIKIPLVPFHTWLPdahvEASTPVSVLLAGVLLKLGTYGLLRFGVGLFPEAWVYLapwLATWAVVS 281

                         90       100       110
                 ....*....|....*....|....*....|
gi 712042113 164 ILAGGWGGLNQTQLRKILAYSSIAHMGWMM 193
Cdd:PRK06473 282 VLYGASCAIAQKDMKKMVAYSSIGHMGYIL 311
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
85-193 1.51e-04

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 43.55  E-value: 1.51e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042113  85 TITNMDSNNMLISFTMI-IALTMKLGMAPFHFWVP----EVTQGVSLMTGMLLLTWQKLAPISIMIQMFPSINHNI---L 156
Cdd:PRK07363 195 STQNLSLNTQLILLTGLlLGFGIKIPLVPLHTWLPdaytEASPAVAILLGGVLAKLGTYGLLRFGLQLFPQTWSLVapgL 274

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 712042113 157 MLIALLSILAGGWGGLNQTQLRKILAYSSIAHMGWMM 193
Cdd:PRK07363 275 AIIGTISVIYGALSAIAQKDIKRMVAYSSIGHMGYIL 311
ND4 MTH00204
NADH dehydrogenase subunit 4; Provisional
 102-213 3.68e-04

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 164750 [Multi-domain]  Cd Length: 485  Bit Score: 42.36  E-value: 3.68e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042113 102 IALTMKLGMAPFHFWVPEV-----TQGVSLMTGMLLltwqKLAP---ISIMIQMFPSINHNILMLIALLSILAGGWGGL- 172
Cdd:MTH00204 217 LSLAVKIPQIPFHIWLPQAhveapVAGSVILAGILL----KLGGygfLRFSWPLFPAASEYFAPLIVMLSVIAVIYGSLt 292

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 712042113 173 --NQTQLRKILAYSSIAHMGwMMTILMFCPSMTMLNLFIYLML 213
Cdd:MTH00204 293 tcRQVDFKRLIAYSSVAHMG-LVPLGLFTHTIEGLVAAVFLML 334
ND2 MTH00091
NADH dehydrogenase subunit 2; Provisional
 98-224 5.36e-04

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177154  Cd Length: 273  Bit Score: 41.01  E-value: 5.36e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042113  98 FTMIIALTMKLGMAPFHFWVPEVTQGVSLMTGMLLLTWQKLAPISIMIQMFPSINHNILMLIALLSILAggwgGLNQTQL 177
Cdd:MTH00091  61 YFQFLILMMKIGVAPFHFWIFSVTNGLFGWNLMWFLTFQKLPFLLVLLQFFSKNFFFLLLFGLLICFFQ----MFLLKSY 136

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 712042113 178 RKILAYSSIAHMGWMMTILMFCPSMTMLNLFIYLMLTITMFTMLNMN 224
Cdd:MTH00091 137 KNLLILSSTESFNWLILSFFFSFFNVFFLFFYYFLLMLFLIPKFNNV 183
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
94-298 7.92e-04

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 41.09  E-value: 7.92e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042113  94 MLISFTMIIALTMKLGMAPFhFWVPEVTQ----GVSLMTGMLLLTWQKLAPISIMIQMFP---SINHNILMLIALLSILA 166
Cdd:PRK12663 207 TTIALLFLLAFGMKAALFPF-MWLPAAYHtpntEVAALFAALLTKVGIYALIRVFTLLFPqerELLHPLLATMAAITMVI 285

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042113 167 GGWGGLNQTQLRKILAYSSIAHMGWMMTILMFCPSMTMLNLFIYLMLTITMFTML--------NMNMNTTTLTLSNLWSK 238
Cdd:PRK12663 286 GALGALAYKDIRRIAGYQVISSIGFILLGLALGTPAGINGAIFYLVHDMVVKTALfliagslvRLTGYRSLQYLGGLYRK 365

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042113 239 SPTITTMILVSLLSLGGLPPLTGFLPKWLIIQELTKNNNIIVATVMAIVALLNLYFYMRL 298
Cdd:PRK12663 366 EPLFGALFLILIFAIGGLPPFSGFWGKVLLVQGALDNGAYILLALMLITSLITMYSLFRI 425
PRK02546 PRK02546
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 2-193 1.13e-03

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 235050 [Multi-domain]  Cd Length: 525  Bit Score: 40.85  E-value: 1.13e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042113   2 KPPILMIIMMTIFTGTMLTMISSHWLLIWIGLEINMLSIIPILTKNPKPRSTEAATKYFLTQATASMLLMFTIVFNAMHS 81
Cdd:PRK02546 113 KPKLFYFLMLAMYGGQIAVFAVQDMLLFFLAWELELIPVYLLLAIWGGKKRQYAATKFILYTAGSSLFILLAALAMAFYG 192

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042113  82 GQWT--ITNMDSNNMLISFTM------IIALTMKLGMAPFHFWVP----EVTQGVSLMTGMLLLTWQKLAPISIMIQMFP 149
Cdd:PRK02546 193 DTPTfdMTALAAKDFGLGFQLlcyaglLIAYGVKLPIVPLHTWLPdahgEATAPVHMLLAGILLKMGGYALLRMNAGMLP 272

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*..
gi 712042113 150 SINHN---ILMLIALLSILAGGWGGLNQTQLRKILAYSSIAHMGWMM 193
Cdd:PRK02546 273 DAHAQfapLLIVLGVVNIIYAALTSFAQRNLKRKIAYSSISHMGFVL 319
ndhD CHL00011
NADH dehydrogenase subunit 4
 55-193 1.48e-03

NADH dehydrogenase subunit 4


Pssm-ID: 176954 [Multi-domain]  Cd Length: 498  Bit Score: 40.31  E-value: 1.48e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042113  55 AATKYFLTQATASM-LLMFTIVFNAMHSGQWTITNMDSNN--------MLISFTMIIALTMKLGMAPFHFWVPEVTQGVS 125
Cdd:CHL00011 163 SATKFILYTAGGSIfLLIGVLGMGLYGSNEPTLNFETLANqsypvaleILFYIGFLIAYAVKLPIIPLHTWLPDTHGEAH 242

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 712042113 126 LMTGMLL----LTWQKLAPISIMIQMFP---SINHNILMLIALLSILAGGWGGLNQTQLRKILAYSSIAHMGWMM 193
Cdd:CHL00011 243 YSTCMLLagilLKMGAYGLIRINMELLPhahSIFSPWLVIVGAIQIIYAASTSLGQRNLKKRIAYSSVSHMGFII 317
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 11-302 1.72e-03

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 40.14  E-value: 1.72e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042113  11 MTIFTGTMLTM-ISSHWLLIWIGLEI-NMLSIIPILTKNPKPRSTEAATKYFLTQATASMLLMFTIVFNAMHSGQWTITN 88
Cdd:COG1009  117 LLLFMAAMLGLvLSDNLLLLFVFWELvGLCSYLLIGFWYEKPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLNFSE 196

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042113  89 MDSN-NMLISFTMIIALTM--------KLGMAPFHFWVPE-----------------VTQGVSLMTgmllltwqKLAPIS 142
Cdd:COG1009  197 LLAAaPTILSSPLLTLILLllllgafgKSAQFPLHFWLPDamegptpvsallhaatmVKAGVYLLA--------RLSPLF 268

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042113 143 IMIQMFpsinHNILMLIALLSILAGGWGGLNQTQLRKILAYSSIAHMGWMMTILmfcpSMTMLNLFIYLMLTITMF-TML 221
Cdd:COG1009  269 ALSPVW----LTVVAIIGAITALFAALIALAQTDIKRVLAYSTVSQLGYMFLAL----GVGAYVAALFHLLTHAFFkALL 340

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042113 222 NM-------NMNTTTLT-LSNLWSKSPTITTMILVSLLSLGGLPPLTGFLPKWLIIQEL--TKNNNIIVATVMAIVALLN 291
Cdd:COG1009  341 FLgagsvihATGTRDIRkMGGLRKKMPITAITFLIGALSLAGIPPFAGFFSKEAILEAAleAGGLGPLLLAVALLGAFLT 420

                        330
                 ....*....|.
gi 712042113 292 LYFYMRLIYST 302
Cdd:COG1009  421 AFYSFRLFFLV 431
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
29-304 2.93e-03

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 39.24  E-value: 2.93e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042113  29 IWIGLEINMLSIIPILTKNPKPRSTEAATKYFLTQATASMLLMFTIVFNAMHSGQWTITNM------DSNNMLI---SFT 99
Cdd:PRK06277 125 LYVFFEIAAIVQVGLVIASGTEEAYKAALKYMILGNVAGSILLLGIGFLLASTGTLNITDIhnallvNPTSPVIyggLLL 204

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042113 100 MIIALTMKLGMAPFHFWVPEVTQGVSLMTGMLLLTWQKLAPISIMIQMFP--------SINHNILMLIALLSILAGGWGG 171
Cdd:PRK06277 205 LIFGLLYGSGLPPFHTIKSDIYAKAKPFGSALLQTFSKFVLVALMLVIFKlfgglsyfPSAQGVLIALSVLAMVFGVVMA 284

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042113 172 LNQTQLRKILAYSSIAHMGWMMTILMFCPSMTM-------LNLFIYL-MLTITMFTMLNMNMNTTTLTLSNLWSKSPTIT 243
Cdd:PRK06277 285 LLQTDYKRLLAYHAISQGGYVAAGLALGTPLGIvagifhaINHVIYKsALFLGAGIVSYRTKTSNLRKLGGLLPVMPVVA 364

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 712042113 244 TMILVSLLSLGGLPPLTGFLPKWLIIQELTKNNNIIVATVMAIVALLNLYFYMRLIYSTSL 304
Cdd:PRK06277 365 FMVLCAKLAISGVPPFNGFQSKLMLAQAAMQANMPELAIIMIIVSIGTFVSMMKAFYLIYL 425
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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