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Conserved domains on  [gi|71145728|gb|AAZ26201|]
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regulatory protein recX [Colwellia psychrerythraea 34H]

Protein Classification

regulatory protein RecX( domain architecture ID 10005398)

regulatory protein RecX modulates RecA activities (both recombinase and coprotease) through direct physical interaction

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
RecX COG2137
SOS response regulatory protein OraA/RecX, interacts with RecA [Posttranslational modification, ...
53-161 4.36e-23

SOS response regulatory protein OraA/RecX, interacts with RecA [Posttranslational modification, protein turnover, chaperones];


:

Pssm-ID: 441740 [Multi-domain]  Cd Length: 154  Bit Score: 89.08  E-value: 4.36e-23
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71145728  53 EPALDYLIERGIVDDRRYAERLTMS-FSEKNIGPNKIKEKLYAKGFSSQVINECVSAIEtsDEDYFDKALTLKIRKFGE- 130
Cdd:COG2137  41 EEVLDRLKEEGYLDDERFAESYVRSrLRRKGYGPRRIRQELRQKGIDEELIEEALEELD--EEDELEAARELARKKFGSl 118
                        90       100       110
                ....*....|....*....|....*....|.
gi 71145728 131 DPIEDIKLKQKALRHLISKGFSYSIANKVVS 161
Cdd:COG2137 119 KPLDPAKEKQKLARFLARRGFSSDLIRRVLR 149
 
Name Accession Description Interval E-value
RecX COG2137
SOS response regulatory protein OraA/RecX, interacts with RecA [Posttranslational modification, ...
53-161 4.36e-23

SOS response regulatory protein OraA/RecX, interacts with RecA [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 441740 [Multi-domain]  Cd Length: 154  Bit Score: 89.08  E-value: 4.36e-23
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71145728  53 EPALDYLIERGIVDDRRYAERLTMS-FSEKNIGPNKIKEKLYAKGFSSQVINECVSAIEtsDEDYFDKALTLKIRKFGE- 130
Cdd:COG2137  41 EEVLDRLKEEGYLDDERFAESYVRSrLRRKGYGPRRIRQELRQKGIDEELIEEALEELD--EEDELEAARELARKKFGSl 118
                        90       100       110
                ....*....|....*....|....*....|.
gi 71145728 131 DPIEDIKLKQKALRHLISKGFSYSIANKVVS 161
Cdd:COG2137 119 KPLDPAKEKQKLARFLARRGFSSDLIRRVLR 149
recX PRK00117
recombination regulator RecX; Reviewed
53-165 9.53e-23

recombination regulator RecX; Reviewed


Pssm-ID: 234646 [Multi-domain]  Cd Length: 157  Bit Score: 88.40  E-value: 9.53e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71145728   53 EPALDYLIERGIVDDRRYAERLTMSFSEKNIGPNKIKEKLYAKGFSSQVINEcvsAIETSDEDYFDKALTLKIRKFGEDP 132
Cdd:PRK00117  46 EAVLDRLKEEGLLDDERFAESFVRSRARKGYGPRRIRQELRQKGVDREIIEE---ALAELDIDWEELARELARKKFRRPL 122
                         90       100       110
                 ....*....|....*....|....*....|...
gi 71145728  133 IEDIKLKQKALRHLISKGFSYSIANKVVSYSDD 165
Cdd:PRK00117 123 PDDAKEKAKLVRFLARRGFSMDVIQRVLRNALD 155
RecX pfam02631
RecX family; RecX is a putative bacterial regulatory protein. The gene encoding RecX is found ...
53-165 5.36e-17

RecX family; RecX is a putative bacterial regulatory protein. The gene encoding RecX is found downstream of recA, and is thought to interact with the RecA protein.


Pssm-ID: 460631 [Multi-domain]  Cd Length: 123  Bit Score: 72.62  E-value: 5.36e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71145728    53 EPALDYLIERGIVDDRRYAERLTMS-FSEKNIGPNKIKEKLYAKGFSSQVINECVSAIEtsdeDYFDKALTLKIRKFGE- 130
Cdd:pfam02631  12 EEVLDRLKELGYLDDARFAESFVRSrARTRGKGPRRIRQELRQKGVDEEIIEEALEEFD----EEEQIARELAEKKFKRy 87
                          90       100       110
                  ....*....|....*....|....*....|....*
gi 71145728   131 DPIEDIKLKQKALRHLISKGFSYSIANKVVSYSDD 165
Cdd:pfam02631  88 PAESDRKLKQKLIRFLARRGFSSEVIRAALQEEDE 122
 
Name Accession Description Interval E-value
RecX COG2137
SOS response regulatory protein OraA/RecX, interacts with RecA [Posttranslational modification, ...
53-161 4.36e-23

SOS response regulatory protein OraA/RecX, interacts with RecA [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 441740 [Multi-domain]  Cd Length: 154  Bit Score: 89.08  E-value: 4.36e-23
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71145728  53 EPALDYLIERGIVDDRRYAERLTMS-FSEKNIGPNKIKEKLYAKGFSSQVINECVSAIEtsDEDYFDKALTLKIRKFGE- 130
Cdd:COG2137  41 EEVLDRLKEEGYLDDERFAESYVRSrLRRKGYGPRRIRQELRQKGIDEELIEEALEELD--EEDELEAARELARKKFGSl 118
                        90       100       110
                ....*....|....*....|....*....|.
gi 71145728 131 DPIEDIKLKQKALRHLISKGFSYSIANKVVS 161
Cdd:COG2137 119 KPLDPAKEKQKLARFLARRGFSSDLIRRVLR 149
recX PRK00117
recombination regulator RecX; Reviewed
53-165 9.53e-23

recombination regulator RecX; Reviewed


Pssm-ID: 234646 [Multi-domain]  Cd Length: 157  Bit Score: 88.40  E-value: 9.53e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71145728   53 EPALDYLIERGIVDDRRYAERLTMSFSEKNIGPNKIKEKLYAKGFSSQVINEcvsAIETSDEDYFDKALTLKIRKFGEDP 132
Cdd:PRK00117  46 EAVLDRLKEEGLLDDERFAESFVRSRARKGYGPRRIRQELRQKGVDREIIEE---ALAELDIDWEELARELARKKFRRPL 122
                         90       100       110
                 ....*....|....*....|....*....|...
gi 71145728  133 IEDIKLKQKALRHLISKGFSYSIANKVVSYSDD 165
Cdd:PRK00117 123 PDDAKEKAKLVRFLARRGFSMDVIQRVLRNALD 155
RecX pfam02631
RecX family; RecX is a putative bacterial regulatory protein. The gene encoding RecX is found ...
53-165 5.36e-17

RecX family; RecX is a putative bacterial regulatory protein. The gene encoding RecX is found downstream of recA, and is thought to interact with the RecA protein.


Pssm-ID: 460631 [Multi-domain]  Cd Length: 123  Bit Score: 72.62  E-value: 5.36e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71145728    53 EPALDYLIERGIVDDRRYAERLTMS-FSEKNIGPNKIKEKLYAKGFSSQVINECVSAIEtsdeDYFDKALTLKIRKFGE- 130
Cdd:pfam02631  12 EEVLDRLKELGYLDDARFAESFVRSrARTRGKGPRRIRQELRQKGVDEEIIEEALEEFD----EEEQIARELAEKKFKRy 87
                          90       100       110
                  ....*....|....*....|....*....|....*
gi 71145728   131 DPIEDIKLKQKALRHLISKGFSYSIANKVVSYSDD 165
Cdd:pfam02631  88 PAESDRKLKQKLIRFLARRGFSSEVIRAALQEEDE 122
recX PRK14135
recombination regulator RecX; Provisional
55-159 3.09e-10

recombination regulator RecX; Provisional


Pssm-ID: 237619 [Multi-domain]  Cd Length: 263  Bit Score: 57.14  E-value: 3.09e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71145728   55 ALDYLIERGIVDDRRYAErltmSFSEKNI-----GPNKIKEKLYAKGFSSQVINECVSaiETSDEDYFDKALTL---KIR 126
Cdd:PRK14135  94 VIDKLKEEKYIDDKEYAE----SYVRTNIntgdkGPRVIKQKLLQKGIEDEIIEEALS--EYTEEDQIEVAQKLaekLLK 167
                         90       100       110
                 ....*....|....*....|....*....|...
gi 71145728  127 KFGEDPIEdiKLKQKALRHLISKGFSYSIANKV 159
Cdd:PRK14135 168 KYQKLPFK--ALKQKIIQSLLTKGFSYEVIKAA 198
recX PRK14135
recombination regulator RecX; Provisional
87-154 5.93e-03

recombination regulator RecX; Provisional


Pssm-ID: 237619 [Multi-domain]  Cd Length: 263  Bit Score: 35.96  E-value: 5.93e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 71145728   87 KIKEKLYAKGFSSQVINECVSAIE-TSDEDYFDKALTLK----IRKFGEDpiEDIKLKQKALRHLISKGFSYS 154
Cdd:PRK14135 180 KIIQSLLTKGFSYEVIKAALEELDlEQDEEEEQELLQKElekaYRKYSKY--DGYELKQKLKQALYRKGFSYD 250
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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