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Conserved domains on  [gi|70955224|gb|AAZ16239|]
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NADH dehydrogenase subunit 2 (mitochondrion) [Purpureicephalus spurius]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475904)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 1.79e-149

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 424.62  E-value: 1.79e-149
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224    1 MGPFTKLISTMSLILGTTITITSNHWTMAWTGLEINTLAIIPLISKSHHPRAIEATTKYFLTQAAASTLLLFSSMINAWS 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224   81 TGQWDISQLTYPPSCLLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTLMKLPPTTILLLTSHSLNPTLLTTMSIM 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224  161 SIALGGWMGLNQTQTRKILAFSSISHLGWMTMIIIYNPKLTLLTFYMYALMTTSIFLTLNTINTLKLSTLLISWTKTPML 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224  241 NTTLMMTLLSLAGLPPLTGFLPKWLIIQELTKQEMTATATTIALLSLLGLFFYLRLAYCSTITLPPNPSNKMKQWSTKKP 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|....*.
gi 70955224  321 TSTLTPSITSLSILLLPLSPMILTTT 346
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMILTII 346
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 1.79e-149

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 424.62  E-value: 1.79e-149
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224    1 MGPFTKLISTMSLILGTTITITSNHWTMAWTGLEINTLAIIPLISKSHHPRAIEATTKYFLTQAAASTLLLFSSMINAWS 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224   81 TGQWDISQLTYPPSCLLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTLMKLPPTTILLLTSHSLNPTLLTTMSIM 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224  161 SIALGGWMGLNQTQTRKILAFSSISHLGWMTMIIIYNPKLTLLTFYMYALMTTSIFLTLNTINTLKLSTLLISWTKTPML 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224  241 NTTLMMTLLSLAGLPPLTGFLPKWLIIQELTKQEMTATATTIALLSLLGLFFYLRLAYCSTITLPPNPSNKMKQWSTKKP 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|....*.
gi 70955224  321 TSTLTPSITSLSILLLPLSPMILTTT 346
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMILTII 346
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 14-298 2.34e-29

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 117.52  E-value: 2.34e-29
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224  14 ILGTTITITSNHWTMAWTGLEINTLAIIPLIS-KSHHPRAIEATTKYFLTQAAASTLLLF-SSMINAwSTGQWDISQL-- 89
Cdd:COG1007 112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYG-ATGSLNLAGIaa 190

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224  90 ------TYPP----SCLLLTTAIAIKLGLTPFHFWFPEVLQGSslttalllstlmklpPTTI------------------ 141
Cdd:COG1007 191 alaaggANSPllllGLVLVLAGLAFKLSAVPFHMWTPDVYEGA---------------PTPVtaflatapkiaafaallr 255

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224 142 -LLLTSHSLNP---TLLTTMSIMSIALGGWMGLNQTQTRKILAFSSISHLGWMTMIIIYNPKLTL--LTFYM--YALMTT 213
Cdd:COG1007 256 lLVEAFPGLAAdwqLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVsaALFYLlaYLFMNL 335

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224 214 SIFLTLNTINTLKLSTLLIS-----WTKTPMLNTTLMMTLLSLAGLPPLTGFLPKWLIIQELTKQEMTATATTIALLSLL 288
Cdd:COG1007 336 GAFAVILLLSRKGGEAEEIEdlaglARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVI 415

                       330
                ....*....|
gi 70955224 289 GLFFYLRLAY 298
Cdd:COG1007 416 SAYYYLRVVK 425
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-268 2.24e-24

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 100.85  E-value: 2.24e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224    23 SNHWTMAWTGLEINTLAIIPLI-SKSHHPRAIEATTKYFLTQAAASTLLLFSSMINAWSTGQWDISQL-----------T 90
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224    91 YPPSCLLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTLM-KLPPTTILLLTS--HSLNPT---LLTTMSIMSIAL 164
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLvKAGGYGLIRRSLlyLPSSPFiqqILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224   165 GGWMGLNQTQTRKILAFSSISHLGWMTMII----IYNPKLTLLTFYMYALMTTSIFLTLNTINTLKLSTLLIS-----WT 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLCAGSVIYRRVHTRNIRdygglAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 70955224   236 KTPMLNTTLMMTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 14-297 5.35e-22

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 96.56  E-value: 5.35e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224    14 ILGTTITITSNHWTMAWTGLEINTLAIIPLIS-KSHHPRAIEATTKYFLTQAAASTLLLFSSMINAWSTGQWDISQLTYP 92
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224    93 PSC------------LLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTLMKLPPTTILL-------LTSHSLNPTL 153
Cdd:TIGR01770 192 LSNgmlnisllllgiVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLrlflyilFGFSEAWQIF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224   154 LTTMSIMSIALGGWMGLNQTQTRKILAFSSISHLGWMTMIIIYNPKLTL--LTFY--MYALMTTSIFLTLNTINTLK--- 226
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIkaVLFYifIYALMSLGAFGVLSLLRSYKdew 351

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 70955224   227 ---LSTLLISWTKTPMLNTTLMMTLLSLAGLPPLTGFLPKWLIIQELTKQEMTATATTIALLSLLGLFFYLRLA 297
Cdd:TIGR01770 352 ieyISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 1.79e-149

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 424.62  E-value: 1.79e-149
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224    1 MGPFTKLISTMSLILGTTITITSNHWTMAWTGLEINTLAIIPLISKSHHPRAIEATTKYFLTQAAASTLLLFSSMINAWS 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224   81 TGQWDISQLTYPPSCLLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTLMKLPPTTILLLTSHSLNPTLLTTMSIM 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224  161 SIALGGWMGLNQTQTRKILAFSSISHLGWMTMIIIYNPKLTLLTFYMYALMTTSIFLTLNTINTLKLSTLLISWTKTPML 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224  241 NTTLMMTLLSLAGLPPLTGFLPKWLIIQELTKQEMTATATTIALLSLLGLFFYLRLAYCSTITLPPNPSNKMKQWSTKKP 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|....*.
gi 70955224  321 TSTLTPSITSLSILLLPLSPMILTTT 346
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMILTII 346
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-329 1.32e-125

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 364.13  E-value: 1.32e-125
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224    1 MGPFTKLISTMSLILGTTITITSNHWTMAWTGLEINTLAIIPLISKSHHPRAIEATTKYFLTQAAASTLLLFSSMINAWS 80
Cdd:MTH00135   1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224   81 TGQWDISQLTYPPSCLLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTLMKLPPTtILLLTSHSLNPTLLTTMSIM 160
Cdd:MTH00135  81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPF-ALILQIAPTNPTLLITLGLT 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224  161 SIALGGWMGLNQTQTRKILAFSSISHLGWMTMIIIYNPKLTLLTFYMYALMTTSIFLTLNTINTLKLSTLLISWTKTPML 240
Cdd:MTH00135 160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224  241 NTTLMMTLLSLAGLPPLTGFLPKWLIIQELTKQEMTATATTIALLSLLGLFFYLRLAYCSTITLPPNPSNKMKQWSTKKP 320
Cdd:MTH00135 240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPST 319


                 ....*....
gi 70955224  321 TSTLTPSIT 329
Cdd:MTH00135 320 QLTLPLAIS 328
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-329 3.17e-122

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 355.38  E-value: 3.17e-122
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224    1 MGPFTKLISTMSLILGTTITITSNHWTMAWTGLEINTLAIIPLISKSHHPRAIEATTKYFLTQAAASTLLLFSSMINAWS 80
Cdd:MTH00070   1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224   81 TGQWDISQLTYPPSCLLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTLMKLPPTTILLLTSHSLNPTLLTTMSIM 160
Cdd:MTH00070  81 TGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224  161 SIALGGWMGLNQTQTRKILAFSSISHLGWMTMIIIYNPKLTLLTFYMYALMTTSIFLTLNTINTLKLSTLLISWTKTPML 240
Cdd:MTH00070 161 STLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224  241 NTTLMMTLLSLAGLPPLTGFLPKWLIIQELTKQEMTATATTIALLSLLGLFFYLRLAYCSTITLPPNPSNKMKQWSTKKP 320
Cdd:MTH00070 241 TSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNK 320


                 ....*....
gi 70955224  321 TSTLTPSIT 329
Cdd:MTH00070 321 TNNLLSLTI 329
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-329 2.89e-110

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 324.88  E-value: 2.89e-110
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224    1 MGPFTKLISTMSLILGTTITITSNHWTMAWTGLEINTLAIIPLISKSHHPRAIEATTKYFLTQAAASTLLLFSSMINAWS 80
Cdd:MTH00105   1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224   81 TGQWDISQLTYPPSCLLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTLMKLPPTTILLLTSHSLNPTLLTTMSIM 160
Cdd:MTH00105  81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224  161 SIALGGWMGLNQTQTRKILAFSSISHLGWMTMIIIYNPKLTLLTFYMYALMTTSIFLTLNTINTLKLSTLLISWTKTPML 240
Cdd:MTH00105 161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224  241 NTTLMMTLLSLAGLPPLTGFLPKWLIIQELTKQEMTATATTIALLSLLGLFFYLRLAYCSTITLPPNPSN-KMK-QWSTK 318
Cdd:MTH00105 241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNmKMKwQFENT 320

                        330
                 ....*....|.
gi 70955224  319 KPTSTLTPSIT 329
Cdd:MTH00105 321 KPMTLLPTLII 331
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-346 3.57e-92

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 278.78  E-value: 3.57e-92
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224    1 MGPFTKLISTMSLILGTTITITSNHWTMAWTGLEINTLAIIPLISKSHHPRAIEATTKYFLTQAAASTLLLFSSMINAWS 80
Cdd:MTH00200   1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224   81 TGQWDISQLTYPPSCLLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTLMKLPPTTILLLTSHSLNPTLLTTMSIM 160
Cdd:MTH00200  81 SGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224  161 SIALGGWMGLNQTQTRKILAFSSISHLGWMTMIIIYNPKLTLLTFYMYALMTTSIFLTLNTINTLKLSTLLISWTKTPML 240
Cdd:MTH00200 161 SVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPIL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224  241 NTTLMMTLLSLAGLPPLTGFLPKWLIIQELTKQEMTATATTIALLSLLGLFFYLRLAYCSTITLPPNPSNKMKQWSTKKP 320
Cdd:MTH00200 241 SMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSN 320

                        330       340
                 ....*....|....*....|....*.
gi 70955224  321 TSTLTPSITSLSILLLPLSPMILTTT 346
Cdd:MTH00200 321 SNLLVGLLLLLSILGLPLTPQLLFLF 346
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 12-326 5.30e-85

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 260.63  E-value: 5.30e-85
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224   12 SLILGTTITITSNHWTMAWTGLEINTLAIIPLISKSHHPRAIEATTKYFLTQAAASTLLLFSSMINAWSTGQWDISQLTY 91
Cdd:MTH00041  12 SIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWLSGSWSINGPLN 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224   92 PPSCLLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTLMKLPPTTILLLTSHSLNPTLLTTMSIMSIALGGWMGLN 171
Cdd:MTH00041  92 TLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGILSVLVGGWGGLN 171

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224  172 QTQTRKILAFSSISHLGWMTMIIIYNPKLTLLTFYMYALMTTSIFLTLNTINTLKLSTLLISWTKTPMLNTTLMMTLLSL 251
Cdd:MTH00041 172 QTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPISAFLFILSILSL 251

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 70955224  252 AGLPPLTGFLPKWLIIQELTKQEMTATATTIALLSLLGLFFYLRLAYCSTITLPPNPSNKMKQWSTKKPTSTLTP 326
Cdd:MTH00041 252 GGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSISLFSWRNSGNITVYGV 326
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-343 3.49e-56

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 186.18  E-value: 3.49e-56
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224    1 MGPFTKLISTMSLILGTTITITSNHWTMAWTGLEINTLAIIPLISKSHHPRAIEATTKYFLTQAAASTLLLFSSMINAWS 80
Cdd:MTH00160   2 MMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNMLN 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224   81 TGqwdisqLTYPPSCLLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTLMKLPPttiLLLTSHSLNPTLLTTMSIM 160
Cdd:MTH00160  82 LM------LFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAP---LILLSYLINNNFIIIIIIL 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224  161 SIALGGWMGLNQTQTRKILAFSSISHLGWMTMIIIYNPKLTLLTFYMYALMTTSIFLTLNTINTLKLSTLLISWTKTPML 240
Cdd:MTH00160 153 SAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKI 232

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224  241 NTTLMMTLLSLAGLPPLTGFLPKWLIIQELTKQEMTATATTIALLSLLGLFFYLRLAYCSTITLppNPSNKMKQWSTKKP 320
Cdd:MTH00160 233 KFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLN--YNKNKWNLKKKKNK 310

                        330       340
                 ....*....|....*....|...
gi 70955224  321 TSTLTPSITSLSILLLPLSPMIL 343
Cdd:MTH00160 311 FSLILNFLSFISLFGLILSSLLF 333
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 6-302 7.09e-47

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 161.59  E-value: 7.09e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224    6 KLISTMSLILGTTITITSNHWTMAWTGLEINTLAIIPLISKSHHPRAIEATTKYFLTQAAASTLLLFSSMINAWSTGQWD 85
Cdd:MTH00144   6 NLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSWF 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224   86 ISqltyppscLLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTLMKLPPttILLLTSHSLNPTLLTT---MSIMSI 162
Cdd:MTH00144  86 SM--------SLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAP--LFLLSNFLDLYWLAYLlcvISVLSA 155

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224  163 ALGGWMGLNQTQTRKILAFSSISHLGWMTMIIIYNPKLTLLTFYMYALMTTSIFLTLNTINTLKLSTLLiSWTKTPMLNT 242
Cdd:MTH00144 156 LVGSIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKDLG-SLKPSYKTGL 234

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224  243 TLMMTLLSLAGLPPLTGFLPKWLIIQELTKQEMTATATTIALLSLLGLFFYLRLAYCSTI 302
Cdd:MTH00144 235 SIISLLLSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFL 294
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 12-310 1.14e-44

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 155.71  E-value: 1.14e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224   12 SLILGTTITITSNHWTMAWTGLEINTLAIIPLISKSHHPRAIEATTKYFLTQAAASTLLLFSSminawsTGQWDISQLTY 91
Cdd:MTH00011  14 TMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGM------TMMWSFPSLLK 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224   92 PPSCLLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTLMKLPPTTILLLTSHSLNPTLLTTMSIMSIALGGWMGLN 171
Cdd:MTH00011  88 NITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAGGLGGMN 167

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224  172 QTQTRKILAFSSISHLGWMTMIIIYNPKLTLLTFYMYALMTTSIFLTLNTINTLKLSTLLISWTKTPMLNTTLMMTLLSL 251
Cdd:MTH00011 168 QTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFIMLLSL 247

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 70955224  252 AGLPPLTGFLPKWLIIQELTKQEMTATATTIALLSLLGLFFYLRLAYcSTITLPPNPSN 310
Cdd:MTH00011 248 GGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIF-NFMYLSPTFSS 305
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 12-313 8.37e-39

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 140.19  E-value: 8.37e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224   12 SLILGTTITITSNHWTMAWTGLEINTLAIIPLISKSHHPRAIEATTKYFLTQAAASTLLLFSSMINAWSTgqwdisqLTY 91
Cdd:MTH00197   6 IIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSFSNL-------YLS 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224   92 PPSCLLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTLMKLPPttILLLTSHSLNPTLLTTMSIMSIALGGWMGLN 171
Cdd:MTH00197  79 LLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAP--LLILAFNSSSFMGLLICSVLSSLIGGIGGMN 156

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224  172 QTQTRKILAFSSISHLGWMTMIIIYNPKLTLLTFYMYALMTTSIFLTLNTINTLKLSTLLISWTKTPMLNTTLMMTLLSL 251
Cdd:MTH00197 157 QSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLSFLSL 236

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 70955224  252 AGLPPLTGFLPKWLIIQELTKQEMTATATTIALLSLLGLFFYLRLAYCSTITLPPNPSNKMK 313
Cdd:MTH00197 237 GGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKSLILSNWMINFLMK 298
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 14-298 2.34e-29

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 117.52  E-value: 2.34e-29
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224  14 ILGTTITITSNHWTMAWTGLEINTLAIIPLIS-KSHHPRAIEATTKYFLTQAAASTLLLF-SSMINAwSTGQWDISQL-- 89
Cdd:COG1007 112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYG-ATGSLNLAGIaa 190

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224  90 ------TYPP----SCLLLTTAIAIKLGLTPFHFWFPEVLQGSslttalllstlmklpPTTI------------------ 141
Cdd:COG1007 191 alaaggANSPllllGLVLVLAGLAFKLSAVPFHMWTPDVYEGA---------------PTPVtaflatapkiaafaallr 255

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224 142 -LLLTSHSLNP---TLLTTMSIMSIALGGWMGLNQTQTRKILAFSSISHLGWMTMIIIYNPKLTL--LTFYM--YALMTT 213
Cdd:COG1007 256 lLVEAFPGLAAdwqLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVsaALFYLlaYLFMNL 335

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224 214 SIFLTLNTINTLKLSTLLIS-----WTKTPMLNTTLMMTLLSLAGLPPLTGFLPKWLIIQELTKQEMTATATTIALLSLL 288
Cdd:COG1007 336 GAFAVILLLSRKGGEAEEIEdlaglARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVI 415

                       330
                ....*....|
gi 70955224 289 GLFFYLRLAY 298
Cdd:COG1007 416 SAYYYLRVVK 425
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 13-296 1.03e-27

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 111.28  E-value: 1.03e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224   13 LILGTTITITSNHWTMAWTGLEINTLAIIPLI-SKSHHPRAIEATTKYFLTQAAASTLLLFS-------------SMINA 78
Cdd:MTH00196   2 VALGILCLISSSNWLSVYLAIELQTLSLFILIaQNRGSGYSAEAGLKYFVLGALSSGLFLFGcallcgttgglhlSYINL 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224   79 WSTGQWDISQLTYPPSCLLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTLMKLPPTTILLltSHSLNPTLLTTMS 158
Cdd:MTH00196  82 VLNSGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILV--SIGLNVNILLIGG 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224  159 IMSIALGGWMGLNQTQTRKILAFSSISHLGWMTMII----IYNPKLTLLTFYMYALMTTSIFLTLNTINTLKlsTLLISW 234
Cdd:MTH00196 160 LFSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIeigsFESIQASLVYLFIYIIMSICVFSIILALNVYK--NLIIEF 237

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 70955224  235 T----KTPMLNTTLMMTLLSLAGLPPLTGFLPKWLIIQELTKQEMTATATTIALLSLLGLFFYLRL 296
Cdd:MTH00196 238 SglsrRLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRI 303
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
14-296 1.00e-24

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 104.13  E-value: 1.00e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224   14 ILGTTITITSNHWTMAWTGLEINTLAIIPLIS-KSHHPRAIEATTKYFLTQAAASTLLLF-SSMINAwSTGQWDISQL-- 89
Cdd:PRK05777 113 LLGMMVMVSANDLLTLFLGLELLSLPLYALAAlRRDRRRSLEAAIKYFVLGALASGFLLYgMSLLYG-ATGSLSFAGIak 191

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224   90 ------TYPP----SCLLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTLMKL----PPTTILLLTSHSLNPT--- 152
Cdd:PRK05777 192 aladgsGNSLlllfGLVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaVLLRLLVVAFGGLSEDwqq 271

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224  153 LLTTMSIMSIALGGWMGLNQTQTRKILAFSSISHLGWMTMIIIYNPKLTL--LTFYM--YALMTTSIF-----LTLNTIN 223
Cdd:PRK05777 272 VLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYsaVLFYLlaYLFMTLGAFgvislLRRKGGE 351

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 70955224  224 TLKLSTLL-ISWTKtPMLNTTLMMTLLSLAGLPPLTGFLPKWLIIQELTKQEMTATATTIALLSLLGLFFYLRL 296
Cdd:PRK05777 352 AESISDFAgLSKRS-PLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYYLRV 424
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-268 2.24e-24

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 100.85  E-value: 2.24e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224    23 SNHWTMAWTGLEINTLAIIPLI-SKSHHPRAIEATTKYFLTQAAASTLLLFSSMINAWSTGQWDISQL-----------T 90
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224    91 YPPSCLLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTLM-KLPPTTILLLTS--HSLNPT---LLTTMSIMSIAL 164
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLvKAGGYGLIRRSLlyLPSSPFiqqILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224   165 GGWMGLNQTQTRKILAFSSISHLGWMTMII----IYNPKLTLLTFYMYALMTTSIFLTLNTINTLKLSTLLIS-----WT 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLCAGSVIYRRVHTRNIRdygglAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 70955224   236 KTPMLNTTLMMTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 14-297 5.35e-22

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 96.56  E-value: 5.35e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224    14 ILGTTITITSNHWTMAWTGLEINTLAIIPLIS-KSHHPRAIEATTKYFLTQAAASTLLLFSSMINAWSTGQWDISQLTYP 92
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224    93 PSC------------LLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTLMKLPPTTILL-------LTSHSLNPTL 153
Cdd:TIGR01770 192 LSNgmlnisllllgiVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLrlflyilFGFSEAWQIF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224   154 LTTMSIMSIALGGWMGLNQTQTRKILAFSSISHLGWMTMIIIYNPKLTL--LTFY--MYALMTTSIFLTLNTINTLK--- 226
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIkaVLFYifIYALMSLGAFGVLSLLRSYKdew 351

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 70955224   227 ---LSTLLISWTKTPMLNTTLMMTLLSLAGLPPLTGFLPKWLIIQELTKQEMTATATTIALLSLLGLFFYLRLA 297
Cdd:TIGR01770 352 ieyISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 13-296 4.35e-20

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 90.85  E-value: 4.35e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224   13 LILGTTITITSNHWTMAWTGLEINTLAIIPLIS-KSHHPRAIEATTKYFLTQAAASTLLLFSSMINAWSTGQWDI----S 87
Cdd:MTH00199 106 VALGSLLLVSSINWLSIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSIqginS 185

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224   88 QLTYPPSCLLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTLMKLPPTTILLLTSHSLNPTLLTtmSIMSIALGGW 167
Cdd:MTH00199 186 ILTGDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNVVLIC--AVLSIIYGAI 263

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224  168 MGLNQTQTRKILAFSSISHLGWMTMIIIYNP----KLTLLTFYMYALMTTSIFLTlntINTLKLSTLLISWT-----KTP 238
Cdd:MTH00199 264 GALNQTKIKRLLAYSGIGHMGFILFGVAIGSfesiQASLIYMIIYVIMSICSFSI---ILSLKLTKGLIVEVsglsrKNP 340

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 70955224  239 MLNTTLMMTLLSLAGLPPLTGFLPKWLIIQELTKQEMTATATTIALLSLLGLFFYLRL 296
Cdd:MTH00199 341 VIALTLALTFLSIAGIPPLAGFLSKWLILLSGVSSGYYLICIIAVLSSVIAGVYYVRV 398
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 13-296 1.41e-18

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 85.97  E-value: 1.41e-18
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224  13 LILGTTITITSNHWTMAWTGLEINTLAIIPLISKSHHPRAIEATTKYFLTQAAASTLLLFSSMINAWSTGQWDISQL--- 89
Cdd:COG0651 116 LLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLaar 195

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224  90 --TYPPS-----CLLLTTAIAIKLGLTPFHFWFPEVlqgsslttalllstlMKLPPT--------------------TIL 142
Cdd:COG0651 196 laELDPGlllaaFALLLVGFGIKAALFPLHFWLPDA---------------YPAAPSpvsallsglltkvgvyailrVLT 260

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224 143 LLTSHSLNP---TLLTTMSIMSIALGGWMGLNQTQTRKILAFSSISHLGWMTMII-IYNPK-LTLLTFYM--YALMTTSI 215
Cdd:COG0651 261 LLFGADPALflgTLLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLgLGTPLgLAGALFHLlnHALAKALL 340

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224 216 FLT----LNTINTLKLSTLLISWTKTPMLNTTLMMTLLSLAGLPPLTGFLPKWLIIQELTKQEMTATATTIALLSLLGLF 291
Cdd:COG0651 341 FLAagaiERATGTRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLA 420


                ....*
gi 70955224 292 FYLRL 296
Cdd:COG0651 421 YFVRI 425
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 2-296 7.39e-17

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 81.44  E-value: 7.39e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224    2 GPFTKLISTMSLILGTTITITSNHWTMAWTGLEINTLAIIPLISKSHHPRAI---------EATTKYFLTQAAASTLLLF 72
Cdd:MTH00198 186 GPRSGFALVLIVGLGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLF 265

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224   73 SSMINAWSTGQ--------------WDISQLTYPPSCLLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTLMKLpp 138
Cdd:MTH00198 266 GCALYFGFTGNegmlgtilsatletTNIELRQGSLGYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKF-- 343

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224  139 TTILLLTSHSLNPTLLTTMSIMSIALGGWMGLNQTQTRKILAFSSISHLGWMTMIIIYNPKLTLLTFYMYALM-TTSIFL 217
Cdd:MTH00198 344 TVYILLTSLVITSKLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILIGVSAGTYESLQASWTYAVTyLVSALA 423

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224  218 TLNTINTL------------------------KLSTLLISWTKTPMLNTTLMMTLLSLAGLPPLTGFLPKWLIIQELTKQ 273
Cdd:MTH00198 424 SFTVICTLeefgtrtptsrqrdgsfgnynlvrRLVDLTILSRGQPYIAFSLAIVFLSLAGIPPLLGFLGKWFILVGSIKI 503

                        330       340       350
                 ....*....|....*....|....*....|
gi 70955224  274 EMTATATTIALLSLLGL-------FFYLRL 296
Cdd:MTH00198 504 AFSSSLSIYYLVALFAIictcisaFYYIRI 533
ndhB CHL00049
NADH dehydrogenase subunit 2
 51-263 2.71e-12

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 67.34  E-value: 2.71e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224   51 RAIEATTKYFLTQAAASTLLLFS-SMINAWSTGQWDIS---------QLTYPPSCLL----LTTAIAIKLGLTPFHFWFP 116
Cdd:CHL00049 159 RSNEATMKYLLMGGASSSILVYGfSWLYGLSGGEIELQeivnglintQMYNSPGISIalifITVGIGFKLSLAPFHQWTP 238

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224  117 EVLQGSSLTTALLLSTLMKLP----PTTILLLTSHSLNP---TLLTTMSIMSIALGGWMGLNQTQTRKILAFSSISHLGW 189
Cdd:CHL00049 239 DVYEGSPTPVVAFLSVTSKVAasalATRIFDIPFYFSSNewhLLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGY 318

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224  190 MTMIII-------YNPKLTLLTFYmyalmttsIFLTLNTINTLKLSTLLI----------SWTKTPMLNTTLMMTLLSLA 252
Cdd:CHL00049 319 VIIGIIvgdsndgYASMITYMLFY--------IFMNLGTFACIVLFGLRTgtdnirdyagLYTKDPFLALSLALCLLSLG 390

                        250
                 ....*....|.
gi 70955224  253 GLPPLTGFLPK 263
Cdd:CHL00049 391 GIPPLAGFFGK 401
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-298 3.44e-12

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 67.21  E-value: 3.44e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224   33 LEINTLAIIPLISKSHHPRAIEATTKYFLTQAAASTLLLFSSMINAWSTGQWDISQLT--YPPSCLLLT------TAIAI 104
Cdd:PRK08375 135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGVGLLYGVTGTLNMADLAgaLAENPTVVTafgfvlLALAL 214

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224  105 KLGLTPFHFWFPE-----------VLQGSSLTTALLLSTLMKLPPTTILLLTSHSLNPTLLTTMsIMSIALGGWMGLNQT 173
Cdd:PRK08375 215 KAAVFPLHTWLPRaypaappvvtaLLSGLVTKVAVYALIRIYFTVFGGDFRFALGLGWLLAVLA-LLSMLVGSLAALGQD 293

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224  174 QTRKILAFSSISHLGWMTMIIIYNPKLTLL--TFYM--YALMTTSIFLTLNTI----NTLKLSTLLISWTKTPMLNTTLM 245
Cdd:PRK08375 294 DVKRVLAYSTVSQMGYILLGLALLTPLALAagLLHLlhHALMKGALFLAAGAIevtyGTRRLSELSGLGRRMPLTAAAFA 373

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|...
gi 70955224  246 MTLLSLAGLPPLTGFLPKWLIIQELTKQEMTATATTIALLSLLGLFFYLRLAY 298
Cdd:PRK08375 374 VASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRIWY 426
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
50-263 6.96e-11

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 63.15  E-value: 6.96e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224   50 PRAIEATTKYFLTQAAASTLLLF-SSMINAWSTGQWDIS----QLTYPPSCLLLTT------AIAIKLGLTPFHFWFPEV 118
Cdd:PRK02504 157 PRSNEAALKYLLIGAASSAIFLYgSSLLYGLSGGSTQLSaialALITSPSLGLALAlvfviaGIAFKISAVPFHQWTPDV 236

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224  119 LQGSSLTTALLLSTLMKLPPTTI---LLLTSHSLNPT----LLTTMSIMSIALGGWMGLNQTQTRKILAFSSISHLGWMT 191
Cdd:PRK02504 237 YEGSPTPVVAFLSVGSKAAGFALairLLVTAFPSFDEqwklLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAGFVM 316

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224  192 MIIIYNPK--LTLLTFYM--YALMTTSIFLTLnTINTLKLSTLLIS-----WTKTPMLNTTLMMTLLSLAGLPPLTGFLP 262
Cdd:PRK02504 317 IGLVAGTEagYASMVFYLlaYLFMNLGAFACV-ILFSLRTGTDQISdyaglYQKDPLLTLGLSLCLLSLGGIPPLAGFFG 395


                 .
gi 70955224  263 K 263
Cdd:PRK02504 396 K 396
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 38-311 1.41e-10

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 62.02  E-value: 1.41e-10
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224  38 LAIIP---LISKSHHPRAIEATTKYFLTQAAASTLLLFSSMINAWSTGQW-----DISQLTYPPS-----CLLLTTAIAI 104
Cdd:COG1008 142 LMLIPmyfLIGIWGGERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfdiaELAAAPLPLTaqlllFLAFFIAFAV 221

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224 105 KLGLTPFHFWFPEVLQGSSlttalllstlmklPPTTILL---------------------LTSHSLNPTLLTtMSIMSIA 163
Cdd:COG1008 222 KVPMFPFHTWLPDAHVEAP-------------TAGSVLLagvllkmggygllrfalplfpEASAYFAPLLAA-LGVIGII 287

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224 164 LGGWMGLNQTQTRKILAFSSISHLGWMTM-IIIYNPK-LTLLTFYMYA--LMTTSIFLTLNTINTlKLSTLLIS-----W 234
Cdd:COG1008 288 YGALVALAQTDLKRLIAYSSVSHMGFVLLgIFALNPLgLQGAVLQMVShgLITAALFLLVGVLYD-RTHTRDIAdlgglA 366

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224 235 TKTPMLNTTLMMTLLSLAGLPPLTGFLPKWLIIQELTKqemtaTATTIALLSLLGLFF---YLRLAYCSTITLPPNPSNK 311
Cdd:COG1008 367 KRMPVLAALFLLAALASLGLPGTSGFVGEFLVLLGAFQ-----VNPWLAILAALGLILtaaYLLWMYQRVFFGPLKEELA 441
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 50-292 6.80e-10

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 59.95  E-value: 6.80e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224    50 PRAIEATTKYFLTQAAASTLLLFSSMINAWSTGQW----DISQLTYPPSC-----LLLTTAIAIKLGLTPFHFWFPEV-L 119
Cdd:TIGR01972 152 PNRIYAAMKFFLYTLAGSLLMLLAILGLYFLGGGTfdllELLNLPLPFGVqtwlfLAFFIAFAVKVPLFPLHTWLPDAhV 231

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224   120 QGSSLTTALLLSTLMKLPPTTILLL-------TSHSLNPtLLTTMSIMSIALGGWMGLNQTQTRKILAFSSISHLGWMTM 192
Cdd:TIGR01972 232 EAPTAGSVILAGVLLKMGTYGFLRFnlplfpdASLYFAP-VLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLL 310

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224   193 IIIYNPKLTLL--TFYMYA--LMTTSIFLTLNTINTlKLSTLLIS-----WTKTPMLNTTLMMTLLSLAGLPPLTGFLPK 263
Cdd:TIGR01972 311 GIFSFNELGISgaVFQMIShgLITAALFLLVGVLYE-RAHTRDIAkygglANKMPVLAAFFMLFAMASLGLPGTSGFVGE 389

                         250       260
                  ....*....|....*....|....*....
gi 70955224   264 WLIIQELTKqemtaTATTIALLSLLGLFF 292
Cdd:TIGR01972 390 FLILLGSFK-----VNPVVAFLAALGIVL 413
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 48-298 3.03e-09

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 58.24  E-value: 3.03e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224  48 HHPRAIEATTKYFLTQAAASTLLLFSSMINAWSTGQWDISQL-----------TYPPSCLLLTTAIAIKLGLTPFHFWFP 116
Cdd:COG1009 156 EKPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLNFSELlaaaptilsspLLTLILLLLLLGAFGKSAQFPLHFWLP 235

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224 117 EVLQGsslttalllstlmklpPTTI---------------LLLTSH---SLNPTLLTTMSIMSIA---LGGWMGLNQTQT 175
Cdd:COG1009 236 DAMEG----------------PTPVsallhaatmvkagvyLLARLSplfALSPVWLTVVAIIGAItalFAALIALAQTDI 299

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224 176 RKILAFSSISHLGWMTMII---IYNPKLTLLT---FYMYAL-MTT-SIFLTLNTINTLKLSTLlisWTKTPMLNTTLMMT 247
Cdd:COG1009 300 KRVLAYSTVSQLGYMFLALgvgAYVAALFHLLthaFFKALLfLGAgSVIHATGTRDIRKMGGL---RKKMPITAITFLIG 376

                       250       260       270       280       290
                ....*....|....*....|....*....|....*....|....*....|...
gi 70955224 248 LLSLAGLPPLTGFLPKWLIIQELTKQEMTATATTIALL--SLLGLFFYLRLAY 298
Cdd:COG1009 377 ALSLAGIPPFAGFFSKEAILEAALEAGGLGPLLLAVALlgAFLTAFYSFRLFF 429
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 34-294 4.34e-09

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 57.70  E-value: 4.34e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224   34 EINTLA---IIPLISKshhpRAIEATTKYFLTQAAASTLLLFSSMINAWSTGQWDISQ----LTYPPS-------CLLLT 99
Cdd:PRK08668 128 EIMTFSsfmMVPMGKK----ESRKASLKYFVLSAIGAYAMLYAIFLIYAKTGTFDFADisqgLINDTStgfalivFLFLL 203

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224  100 TAIAIKLGLTPFHFWFPE-----------VLQGSSLTT-ALLLSTLMKLPPTTILLLT-----SHSLNPTLLTTMSIMSI 162
Cdd:PRK08668 204 AFGVAKAGIFPLHVWAPDayseapqsfsaVLSGQLSKLgAYGFLLVLYVLPGTKLFSEfgtyrGVPLFNYILAWLGNISI 283

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224  163 ALGGWMGLNQTQTRKILAFSSISHLGWmtmIIIYNPKLTLLTF-------YMYALMTTSIFLTLNTI----NTLKLSTLL 231
Cdd:PRK08668 284 IVGTLMAILQEDIKKLIAYSSVANGGY---ILVGLGLGTSLGFagglfhvFNHALFKGLFFLIFAAViyrtGTTKISEMG 360

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 70955224  232 ISWTKTPMLNTTLMMTLLSLAGLPPLTGFLPKWLIIQELTKQEMTATAtTIALLSLLGLFFYL 294
Cdd:PRK08668 361 GLIEKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGMPITA-FMAFFGSIGSFLYV 422
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 50-267 2.45e-07

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 52.13  E-value: 2.45e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224   50 PRAIEATTKYFLTQAAASTLLLFSSM----INAWSTGQWDISQLTYPPSCLLLTT--------AIAIKLGLTPFHFWFPE 117
Cdd:PRK05846 157 KNRIYAATKFFLYTLLGSLLMLVAIIylvvVYYNATGTFDIADLLNLPLPPGVQYwlflaffiAFAVKMPMFPLHTWLPD 236

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224  118 -----------VLQGSSLTTALLLSTLMKLPpttILLLTSHSLNPtLLTTMSIMSIALGGWMGLNQTQTRKILAFSSISH 186
Cdd:PRK05846 237 ahvqaptagsvLLAGILLKMGAYGLLRFSLP---LFPDASHEFAP-IIITLGVIAIIYGALVALAQTDIKKLIAYSSISH 312

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224  187 LGWMTM-IIIYNPK-LTLLTFYMYA--LMTTSIFLTLNTINTlKLSTLLIS-----WTKTPMLNTTLMMTLLSLAGLPPL 257
Cdd:PRK05846 313 MGFVTLgIFAGNQLgIQGAIFQMIShgLSSAALFLLVGVLYD-RLHTRDIAdygglAKVMPVLAAFFLFFAMASLGLPGT 391

                        250
                 ....*....|
gi 70955224  258 TGFLPKWLII 267
Cdd:PRK05846 392 SGFVGEFLIL 401
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 80-263 2.52e-07

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 52.62  E-value: 2.52e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224   80 STGQWDISQL-TYPPSCLLLTTAIAI-------KLGLTPFHFWFPEVLQGSSLTTALLLSTLM---------KLPPTtil 142
Cdd:PRK12644 183 AAGTYRLSELlADPPTGPAVSVAVVLilvgalsKSAIVPFHFWLPGAMAAPTPVSAYLHAAAMvkagiylvaRLAPG--- 259

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224  143 LLTSHSLNPTLLTtMSIMSIALGGWMGLNQTQTRKILAFSSISHLGWMTMII-IYNPKLTLLTFYM---YALMTTSIFLT 218
Cdd:PRK12644 260 FADVPVWRPTVLV-LGLATMLLGGWRALRQHDLKLILAYGTVSQLGFLTVLVgIGTRDAALAGLAMllaHALFKAALFLV 338

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|..
gi 70955224  219 LNTI-------NTLKLSTLlisWTKTPMLNTTLMMTLLSLAGLPPLTGFLPK 263
Cdd:PRK12644 339 VGIIdhstgtrDIRKLSGL---GRRQPVLAVVAALAAASMAGLPPLLGFVAK 387
PRK12650 PRK12650
DUF4040 family protein;
29-304 4.90e-07

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 51.58  E-value: 4.90e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224   29 AWtglEINTLAIIPLISKSHhPRAIEATTKYFLTQAAASTLLLFSSMINAWSTGQWDISQLTYPPSCL---LLTTAIAIK 105
Cdd:PRK12650 138 AW---ELVSLASFFLIARSG-SGGEAGSIRTLILTFFGGLTLLAAVAIAATQTGTTSLSGILHSDVWAekpGLTTVVAVL 213

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224  106 LGLT--------PFHFWFPEVLQGSSLTTALLLSTLMKLPPTTILLLTSHSL--NPT---LLTTMSIMSIALGGWMGLNQ 172
Cdd:PRK12650 214 IAVAaftksaqfPFHFWLPEAMAAITPVSAFLHAAAVVKAGIYLLLRFSPVFhdVAVwnwLLIIVGMITALMGAVFAVQK 293

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224  173 TQTRKILAFSSISHLGWM-TMIIIYNP-KLT--LLTFYMYALMTTSIFLTLNTIN----TLKLSTLLISWTKTPMLNTTL 244
Cdd:PRK12650 294 TDLKKLTAYSTVSQLGWIvATIGVGTPfALTaaVVHTLAHALFKSSLFMLIGVVDhqagTRDIRRLGSLWRRMPFTFVSV 373

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224  245 MMTLLSLAGLPPLTGFLPKWLIIQELTKQEMtATATTIALLSLLGLFFYLRLAYCSTITL 304
Cdd:PRK12650 374 TIAALSMAAVPPLFGFVSKEGMLTAFLEAPG-GNAGVVLLLVGAALGAVFTFAYSARLVL 432
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-266 1.06e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 50.10  E-value: 1.06e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224   33 LEINTLAIIPLIS-KSHHPRAIEATTKYFLTQAAASTLLLFSSminAWSTGQWDI-------SQLTYPPSCL------LL 98
Cdd:PRK08376 150 LEIMSIASYALVAfRNDTWEAIEAGIKYMFVGSLASSMVLLGI---ALLYGQYGTlnmaylaVKMSENPTVVakialaLF 226

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224   99 TTAIAIKLGLTPFHFW----FPEVLQGSSLTTALLLSTLMKLPPTTILLLTSHSLNPT----LLTTMSIMSIALGGWMGL 170
Cdd:PRK08376 227 IAGLAMKSGAVPVHMWlpdaYPAAPSSISAMLLVIKQAGLYALARVLFSIYGPAINLAtvgwVIIILGCLTMFVGVAMAV 306

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224  171 NQTQTRKILAFSSISHLGWM------TMIIIYNPKLT----------LLTFYMYALMTTSIFLT-------LNTINTLKL 227
Cdd:PRK08376 307 VQKDVKRLLAYHSVSQIGYMllglgvGLAALGDPAMAsygeialaggIYHIVNHALYKALLFLTagaviyeTGTRNLNEL 386

                        250       260       270
                 ....*....|....*....|....*....|....*....
gi 70955224  228 STLLISWTKTPMlntTLMMTLLSLAGLPPLTGFLPKWLI 266
Cdd:PRK08376 387 GGLARTMPKTTI---AFLIGAAAIVGLPPFNGFASKWLI 422
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 69-283 1.51e-06

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 49.92  E-value: 1.51e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224   69 LLLFSSMINAWS-TGQWDISQLT-----------YPPSCLLLTTAIAIKLGLTPFHFWFPEVlqgsslttalllstlMKL 136
Cdd:PRK12647 160 LALLAGLILLGNvTGTYSLSELLasgdvirehplYLAILLLVLGGAFTKSAQFPFHFWLPNA---------------MEA 224

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224  137 P-PTTILLltsHS-------------LNP---------TLLTTMSIMSIALGGWMGLNQTQTRKILAFSSISHLGWMTMI 193
Cdd:PRK12647 225 PtPVSAYL---HSatmvkagiyllarLNPvlggtplwqTILPLFGGLTMLTGALLAVRQTDLKLILAYSTVSALGTLVML 301

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224  194 IIYNPKLTLLTFYMY----ALMTTSIFLTLNTIN-------TLKLSTLlisWTKTPMLNTTLMMTLLSLAGLPPLTGFLP 262
Cdd:PRK12647 302 LGLGSELAIKAAVLFlvahSLYKGALFMVAGIIDhetgtrdITKLGGL---RRAMPITAAAALLAALSMAGLPPLFGFLA 378

                        250       260
                 ....*....|....*....|.
gi 70955224  263 KWLIIQELTKQEMTATATTIA 283
Cdd:PRK12647 379 KELIYEALLEAPLWSLILTVA 399
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 20-292 1.53e-06

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 49.54  E-value: 1.53e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224   20 TITSNHWTMAWTGLEINTLAIIPLISKSHHPRAIEATTKYFL------TQAAASTLLLFSS----MINAWSTGQWdiSQL 89
Cdd:PRK06458 124 ALTSNNLGLMWVAIEATTLSSALLVGIYRTRASLEAAWKYIIicsvgvAFALFGTILVYANaatvMGDGEMAILW--TEL 201

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224   90 TYPPSCL---LLTTAIAI-------KLGLTPFHFWFPE-----------VLQGSSLTTALLLSTLMKLppttILLLTSHS 148
Cdd:PRK06458 202 LKHASLLdptLMKLAFVFlligfgtKVGLFPMHAWLPDahseapspvsaLLSGVLLNVALYAVLRYYI----LIDAAIGS 277

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224  149 LNP-TLLTTMSIMSIALGGWMGLNQTQTRKILAFSSISHLGWMTMIIIYNPKL----TLLTFYMYALMTTSIFLTLNTIn 223
Cdd:PRK06458 278 DFPgRLLLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAFALGIGGPLgifaALLHMLNHSLTKSAIFFASGNV- 356

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 70955224  224 TLKLSTLLIS-----WTKTPMLNTTLMMTLLSLAGLPPLTGFLPKWLIIQELTKQEMtaTATTIALLSLLGLFF 292
Cdd:PRK06458 357 LQKYGTRDINvirglLKVSPLTGWGLMLGALAIAGMPPFGVFISEFLILTAGLARGP--LLIAILLLLLLTLAF 428
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 101-267 1.12e-05

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 46.84  E-value: 1.12e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224  101 AIAIKLGLTPFHFWFPE-----------VLQGSSLTTALLLSTLMKLPpttILLLTSHSLNPTLLtTMSIMSIALGGWMG 169
Cdd:MTH00226 239 AMAVKIPIFPFHIWLPKahveapvagsvLLAGILLKLGGYGLVRLSWP---ILPLGAQNLAPAVI-AMGIVGIVYGSFAT 314

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224  170 LNQTQTRKILAFSSISHLGWMTMIIIYNP--KLTLLTFYMYAL-MTTSIFLTLNTINTLKLSTLLISWTK-----TPMLN 241
Cdd:MTH00226 315 CRQIDVKRLVAYSSVAHMGLVSITLVTHDiiGLTGSIFIMLAHgIVSSLLFILVTILYDRHHTRLIKYYRglsitMPIWG 394

                        170       180
                 ....*....|....*....|....*.
gi 70955224  242 TTLMMTLLSLAGLPPLTGFLPKWLII 267
Cdd:MTH00226 395 TIMIVTSLANVAVPPSGNFIGEYLSI 420
PRK06459 PRK06459
hydrogenase 4 subunit B; Validated
 7-270 2.12e-05

hydrogenase 4 subunit B; Validated


Pssm-ID: 235806 [Multi-domain]  Cd Length: 585  Bit Score: 46.32  E-value: 2.12e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224    7 LISTMSL-ILGTTITITSNHWTM---AWTGLEINTLAIIPLISKSHHPRAIeattkyFLTQAAASTLLLFSSMINAWS-T 81
Cdd:PRK06459  74 LSSLYILtILGMAIVLTSDNYLLflaGWEIMTIPSYVAIALTKKNKRPAFV------FMAFGELSTVLILAGFAWAFIiS 147

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224   82 GQWDISQLTYPPSCLLLTTAIAIKLGLTPFHF--WFPEVLQGSSLTTALLLSTLMKLPP----TTILLLTSHSLNPTLLT 155
Cdd:PRK06459 148 GTTNFSYLPSPVPLILASFGFIIKMGMMPFLVseWLPIAHGNAPSNFSAILSATMTLMGvygiLKMTILTQTIPIGYFGL 227

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224  156 TMSIM---SIALGGWMGLNQTQTRKILAFSSISHLGWM-----TMIIIYNPK--------LTLLTFYM-YALMTTSIFLT 218
Cdd:PRK06459 228 TILAIgafSILFGALYAYVSENVKGLLAFSTIENNGAIlvalgLYMVTKQLItsiehfslITVILYSFaHSVAKTGLFLS 307

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|..
gi 70955224  219 LNTINTLKLSTLLISWTKTPMLNTTLMMtlLSLAGLPPLTGFLPKWLIIQEL 270
Cdd:PRK06459 308 SGLQEKQSITYSKKIRNRWIELGLTLLA--SSLSGLLPNIGGVASWLLLESL 357
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 152-267 2.24e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 45.88  E-value: 2.24e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224  152 TLLTTMSIMSIALGGWMGLNQTQTRKILAFSSISHLGWMTMIIIYNPKLTLLTFYMY----ALMTTSIFLTLNTI----N 223
Cdd:PRK12662 280 NVFMILAALAIVFGSVLAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYivnhSIVKSALFMVSGSIsyhfG 359

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 70955224  224 TLKLSTLLISWTKTPMLNTTLMMTLLSLAGLPPLTGFLPKWLII 267
Cdd:PRK12662 360 TTKLEDCLNLWKSMPKITLAFVLLSLSLIGMPPTSGFVAKWYIL 403
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-271 2.28e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 46.10  E-value: 2.28e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224   33 LEINTLAIIPLISKSHHPRAIEATTKYFLTQAAASTLLLFSSMINAWSTGQWDISQL-TYPPSCL-LLTTAIAIKLGLTP 110
Cdd:PRK07234 123 LEVLSIATFLLVAYPRTDRAIWVGLRYLFYSNVAMLFYLIGAVLVYQANGTFAFSGLaTADPEAFaLIALGLLVKGGIFV 202

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224  111 FHFWFPEVlqgsslttalllstlMKLPPTTILLLTS-----------------HSLNPTLLTTMSIMSIALGGWMGLNQT 173
Cdd:PRK07234 203 SGLWLPLT---------------HSEAEPPVSALLSgvvvkagvfplvrcaldVPGLDLIVRIFGVGTALLGVLFALLEK 267

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224  174 QTRKILAFSSISHLGWmtmiIIYNPKLTLLTFYMYALMTTSIFLTLNTINTLKLSTLliswtKTPMLNTTLMMTL----L 249
Cdd:PRK07234 268 DLKRMLAFSTISQLGF----ILAAPLVGGLYALAHGLVKSTLFLCAGALPSRNFTEL-----ISQMLGIGKWIPLtmasF 338

                        250       260
                 ....*....|....*....|..
gi 70955224  250 SLAGLPPLTGFLPKWLIIQELT 271
Cdd:PRK07234 339 SIAGFPLLAGFVSKVLTLKNLL 360
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
 70-305 2.61e-05

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 45.84  E-value: 2.61e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224   70 LLFSSMINAWSTGqwDISQLTYPpsCLLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTLMKLPPTTILLLTS--H 147
Cdd:MTH00020 192 LDFSSVFNMVVSA--PSSDITLI--CLFLFIGAVGKSAQLGLHTWLPDAMEGPTPVSALIHAATMVTAGVFLLIRSSplF 267

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224  148 SLNPTLLTTMSI---MSIALGGWMGLNQTQTRKILAFSSISHLGWMTMII-IYNPKLTLLTFYMYALMTTSIFLTLNTI- 222
Cdd:MTH00020 268 EQAPLALIIVTIvgsLTVFFAATVGLVQNDLKKVIAYSTCSQLGYMVVACgLSHYSISLFHLMNHAFFKALLFLSAGSVi 347

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224  223 -------NTLKLSTLLISwtkTPMLNTTLMMTLLSLAGLPPLTGFLPKWLIIQELTKQEMTATATTIALLS-LLGLFFYL 294
Cdd:MTH00020 348 halsdeqDMRKMGGLISF---LPLTYIFFLIGSLSLMGFPYLTGFYSKDLILELAFGQYYLIFAYWLGCFSaLLTAFYSI 424

                        250
                 ....*....|.
gi 70955224  295 RLAYCSTITLP 305
Cdd:MTH00020 425 RLIYLTFLSNT 435
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
152-325 1.28e-04

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 43.79  E-value: 1.28e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224  152 TLLTTMSIMSIALGGWMGLNQTQTRKILAFSSISHLGWMTM-IIIYNPK-LTLLTFYMYALMT--TSIFLTLNTINTL-- 225
Cdd:PRK12663 273 PLLATMAAITMVIGALGALAYKDIRRIAGYQVISSIGFILLgLALGTPAgINGAIFYLVHDMVvkTALFLIAGSLVRLtg 352

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224  226 --KLSTLLISWTKTPMLNTTLMMTLLSLAGLPPLTGFLPKWLIIQ-ELTKQEMTATATTIA--LLSLLGLFFYLRLAYCS 300
Cdd:PRK12663 353 yrSLQYLGGLYRKEPLFGALFLILIFAIGGLPPFSGFWGKVLLVQgALDNGAYILLALMLItsLITMYSLFRIFFLAYWG 432

                        170       180
                 ....*....|....*....|....*
gi 70955224  301 TITLPPNPSNKMKQWsTKKPTSTLT 325
Cdd:PRK12663 433 DKDGEEVNFKPIPLY-RKLPLSILA 456
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
34-324 2.37e-04

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 42.71  E-value: 2.37e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224   34 EINTLAIIPLISKSHHPRAIEATTKYFLTQAAASTLLLFSSMINAWSTGQWDISQLTY-----PPSCLLLTTAIAIKLG- 107
Cdd:PRK06277 130 EIAAIVQVGLVIASGTEEAYKAALKYMILGNVAGSILLLGIGFLLASTGTLNITDIHNallvnPTSPVIYGGLLLLIFGl 209

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224  108 -----LTPFHFWFPEVLQGSSLTTALLLSTLMKLPPTTILL--------LTSHSLNPTLLTTMSIMSIALGGWMGLNQTQ 174
Cdd:PRK06277 210 lygsgLPPFHTIKSDIYAKAKPFGSALLQTFSKFVLVALMLvifklfggLSYFPSAQGVLIALSVLAMVFGVVMALLQTD 289

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224  175 TRKILAFSSISHLGWMTMIIIYNPKLTLLTFYMYA----LMTTSIFLTLNTI-------NTLKLSTLLiswTKTPMLNTT 243
Cdd:PRK06277 290 YKRLLAYHAISQGGYVAAGLALGTPLGIVAGIFHAinhvIYKSALFLGAGIVsyrtktsNLRKLGGLL---PVMPVVAFM 366

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224  244 LMMTLLSLAGLPPLTGFLPKWLIIQELTKQEMTATATTIALLSLLGLFFYLRLAYcsTITLPPNPsNKMKQWSTKKPTST 323
Cdd:PRK06277 367 VLCAKLAISGVPPFNGFQSKLMLAQAAMQANMPELAIIMIIVSIGTFVSMMKAFY--LIYLKPKP-EELEYKNKKVPKYA 443


                 .
gi 70955224  324 L 324
Cdd:PRK06277 444 V 444
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 13-295 5.63e-04

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 41.66  E-value: 5.63e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224   13 LILGTTITITSNHWTMAWTGLEINTLAIIPLISKSHHPRAIEATTKYFLTQAAA------STLLLFSSMINAWSTGQWDI 86
Cdd:PRK08676 111 LLSVITFAFFSDNLALFWIFAELTTVFSAMLIAILSARENIDAALKYIFIASTAmifafiGLIFLFSLTRQALGTGTLNW 190

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224   87 SQLT-----YPPSCLLLT-----TAIAIKLGLTPFHFWFPEV-LQGSSLTTALLLSTLMKLPPTTILLLTS-------HS 148
Cdd:PRK08676 191 TELAahaslLSPSVLGASflfifIGFLAKSGLVPFHTWLPAAyAKAPSVVSALLSGTVLNIGIYGILRLSAllrqsgaAE 270

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224  149 LNPTLLTTMSIMSIALGGWMGLNQTQTRKILAFSSISHLGWMTMIIIYNPKLTL--LTFYM--YALMTTSIFLTLNTINT 224
Cdd:PRK08676 271 QFSNVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPLALfwMLFHMlaHSLVKSGLFFSAGILHR 350

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 70955224  225 LKLST----LLISWTKTPMLNTTLMMTLLSLAGLPPLTGFLPKWLIIQELTKQEMTATATTIALLSLLG---LFFYLR 295
Cdd:PRK08676 351 QYRSDrfdrIFDVFRLQPVAAWGVILGSAAIIGMPPFPLFLSKFFILLQLGGISVWLVLAVLLLLLLAAssfAIFLLK 428
PRK07691 PRK07691
putative monovalent cation/H+ antiporter subunit D; Reviewed
 152-296 5.99e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 181085 [Multi-domain]  Cd Length: 496  Bit Score: 41.47  E-value: 5.99e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224  152 TLLTTMSIMSIALGGWMGLNQTQTRKILAFSSISHLGWMTM-IIIYNPKLTLLTFYMYA---LMTTSIFLTLNTINTL-- 225
Cdd:PRK07691 276 YLILILALLTIIFGVIGAVAYFDIKKIIIYNIMIAVGVILVgVAMMTESGMIGAIYYLIhdmIVKAALFLLIGIMIKItg 355

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 70955224  226 -----KLSTLLISWtktPMLNTTLMMTLLSLAGLPPLTGFLPKWLIIQELTKQEMTATATTIALLSLLGLFFYLRL 296
Cdd:PRK07691 356 ttdlkKMGGLIKRY---PVLGWMFFIAALSLAGIPPLSGFYGKFFIVEGTFEAGFYVSGIIVLLSSLLVLYSVIKI 428
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
 96-268 1.27e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 40.34  E-value: 1.27e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224   96 LLLTTAIAIKLGLTPFHFWFPE-----------VLQGSSLTTALLLSTLmklppTTILLLTSHSLNpTLLTTMSIMSIAL 164
Cdd:PRK12665 213 AVLLVAFGIKAAVFPLSFWLPDsyptapapvtaVFAGLLTKVGVYAIIR-----THTLLFPGGGLD-TLLMVVALLTMVV 286

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224  165 GGWMGLNQTQTRKILAFSSISHLGWMTM-IIIYNPK-LTLLTFYM--YALMTTSIFLTLNTI-------NTLKLSTLLIS 233
Cdd:PRK12665 287 GILGAIAQSDIKRLLSFTLVSHIGYMVFgIALSTVAgLSGAIYYVahHITVQTTLFLVVGLIerqagssSLRRLGGLAKA 366

                        170       180       190
                 ....*....|....*....|....*....|....*
gi 70955224  234 wtkTPMLNTTLMMTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:PRK12665 367 ---SPLLAVLFFVPALNLGGIPPFSGFIGKVALLE 398
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 48-263 1.43e-03

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 40.58  E-value: 1.43e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224   48 HHPRAIEATTKYFLTQAAASTLLLFSSMINAWSTGQWDISQLTYPPSC--------LLLTTAIAIKLGLT------PFHF 113
Cdd:PRK12649 156 HRPESVYGATKSLLITAGGGLFMFAGFLLLHVITGTYDIATILQDSELienikghpLFLITLILIFIGAAaksaqgPFYI 235

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224  114 WFPEVLQGSSLTTALLLSTLMKLPPTTILLLTSHSLNPT-----LLTTMSIMSIALGGWMGLNQTQTRKILAFSSISHLG 188
Cdd:PRK12649 236 WLPNAMEAPTPVSAFLHSATMVKAGVYLVARIHPIFSGTeawfiLVSGTGMITMVLAGFLAFRQTDIKAILAYSTISQLA 315

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224  189 WMTMIIIYNPK------LTLLTFYM--YALMTTSIFLTLNTI----NTLKLSTLLISWTKTPMLNTTLMMTLLSLAGLPP 256
Cdd:PRK12649 316 YLMTMYGYTTYhepglgVAAATFHLlnHATFKACLFLVAGIVaheaATRDIRKLGGLRKEMPITFIVASIAALAMAGIPP 395


                 ....*..
gi 70955224  257 LTGFLPK 263
Cdd:PRK12649 396 LNGFLSK 402
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 111-268 2.91e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 39.56  E-value: 2.91e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224  111 FHFWFPEVLQGSSLTTALLLSTLMKLPPTTIL-----LLTSHSLNPTLLTTMSIMSIALGGWMGLNQTQTRKILAFSSIS 185
Cdd:MTH00032 244 LHTWLPDAMEGPTPVSALIHAATMVTAGVFLMirsfpLFEKAPLTLLIITIFGALTAFFAATVGLVQNDLKKVIAYSTCS 323

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224  186 HLGWMTMIIIYNPKLTLLTFYM--YALMTTSIFLTLNTI---------NTLKLSTLLISwtkTPMLNTTLMMTLLSLAGL 254
Cdd:MTH00032 324 QLGYMVLIIGIEGSHNVGLFHLvnHAFFKALLFLSAGSVihsttvdeqDMRKMGGLIHS---IPFTYTMMLIGSFSIMGL 400

                        170
                 ....*....|....
gi 70955224  255 PPLTGFLPKWLIIQ 268
Cdd:MTH00032 401 PYLTGFYSKDLILE 414
ND5 MTH00210
NADH dehydrogenase subunit 5; Provisional
 148-303 4.07e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177253 [Multi-domain]  Cd Length: 616  Bit Score: 38.84  E-value: 4.07e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224  148 SLNPTLLTTMSIMSIALGGWMGLNQTQTRKILAFSSISHLGWMTMII-IYNPKLTLLTFYMYALMTTSIFLTLNTI---- 222
Cdd:MTH00210 272 PLALTIVTILGALTAFFAATVGVVQNDLKKVIAYSTCSQLGYMVMVCgISNYSTSLFHLMNHAFFKALLFLSAGSVihav 351

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224  223 ----NTLKLSTLLISwtkTPMLNTTLMMTLLSLAGLPPLTGFLPKWLIIQELTKQEMTATATTIALLS-LLGLFFYLRLA 297
Cdd:MTH00210 352 sdeqDMRKMGGLIKS---IPFTYVMILIGSLSLMGFPYLTGFYSKDLILELTYDKYYIAFAYWLGSFSaLLTAFYSIRLI 428


                 ....*.
gi 70955224  298 YCSTIT 303
Cdd:MTH00210 429 YLTFIT 434
PRK12646 PRK12646
DUF4040 family protein;
91-272 5.35e-03

DUF4040 family protein;


Pssm-ID: 183646 [Multi-domain]  Cd Length: 800  Bit Score: 38.58  E-value: 5.35e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224   91 YPPSCLLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTLMKLPPTTIL-----LLTSHSLNPTLLTTMSIMSIALG 165
Cdd:PRK12646 209 FIPMIFMFLLGAFTKSAQFPFHIWLPRAMAAPTPVSAYLHSATMVKAGIFLLfrftpLLGLSNMYIYIVTFVGLITMLFG 288

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224  166 GWMGLNQTQTRKILAFSSISHLGW-MTMI-----IIYNPKLTLLTFYM------------YALMTTSIFLTLNTIN---- 223
Cdd:PRK12646 289 SITALKQWDLKGILAYSTISQLGMiMAMVgigggYAQHQQDAIASIYVfvlfaalfhlmnHAIFKCALFMGVGIIDheag 368

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*....
gi 70955224  224 TLKLSTLLISWTKTPMLNTTLMMTLLSLAGLPPLTGFLPKWLIIQELTK 272
Cdd:PRK12646 369 TRDIRILSGMRQLFPKMNLVMTIAALSMAGVPFLNGFLSKEMFLDALTQ 417
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
38-266 5.41e-03

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 38.53  E-value: 5.41e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224   38 LAIIPL---ISKSHHPRAIEATTKYFLTQAAASTLLLFSSMINAWSTG--QWDISQL---TYPPSCLLLTTA-----IAI 104
Cdd:PRK06473 138 LELIPLyllIAIWGGQRRGYAATKFLLYTAISGILILVSFLGLVWLSGasSFDYEPLrshTLPLSTQLLLLApilvgFGI 217

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224  105 KLGLTPFHFWFPEV-LQGSSLTTALLLSTLMKLPPTTIL------LLTSHSLNPTLLTTMSIMSIALGGWMGLNQTQTRK 177
Cdd:PRK06473 218 KIPLVPFHTWLPDAhVEASTPVSVLLAGVLLKLGTYGLLrfgvglFPEAWVYLAPWLATWAVVSVLYGASCAIAQKDMKK 297

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224  178 ILAFSSISHLGWMTMIIIYNPKLTLL--TFYM--YALMTTSIFLTLNTI-------NTLKLSTLLISWTKTPMLNTTLMM 246
Cdd:PRK06473 298 MVAYSSIGHMGYILLAAAAATPLSILaaVFQMisHGLISALLFLLVGVVykktgsrDVDVLRGLLNPERGLPITGSLMIL 377

                        250       260
                 ....*....|....*....|
gi 70955224  247 TLLSLAGLPPLTGFLPKWLI 266
Cdd:PRK06473 378 GVMASAGIPGMVGFIAEFLV 397
PRK08168 PRK08168
NADH-quinone oxidoreductase subunit L;
10-120 7.12e-03

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236171 [Multi-domain]  Cd Length: 516  Bit Score: 38.14  E-value: 7.12e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224   10 TMSLILGTTITITSNHWTM---AW--TGLEINTLaiipLISKSHHPRAIEATTKYFLTQAAASTLLLFSSMINAWSTGQW 84
Cdd:PRK08168 106 LAGVLAAVHLLVLSDHLLVliaAWaaISLALHRL----LCFYPDRPFARLAAHKKFIADRLAELLLLAAAALAYLEVGSL 181

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 70955224   85 DISQL-----TYPPS------CLLLTTAIAIKLGLTPFHFWFPEVLQ 120
Cdd:PRK08168 182 SLSALwahlaAQGASpslqaaALLLVLAVILKTAQLPVHGWLIQVME 228
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 55-188 7.20e-03

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 38.09  E-value: 7.20e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224   55 ATTKYFLTQAAASTLLLFSSMINAWSTGQ--WDISQLT---YPPSCLLLT-----TAIAIKLGLTPFHFWFPE------- 117
Cdd:PRK12561 138 AATKFILYTALASIFILVAGLALALSGDTftFDLAELGaksYPLALELLLyagflIAFGVKLPIFPLHTWLPDahgeasa 217

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 70955224  118 ----VLQGSSLTTALLLSTLMKLPpttiLLLTSHSLNPTLLTTMSIMSIALGGWMGLNQTQTRKILAFSSISHLG 188
Cdd:PRK12561 218 pvsmILAGVLLKMGGYALIRFNVQ----MLPDAHVYFAPALAILGVVNIIYGALNAFAQDNVKRRLAYSSVSHMG 288
ND5 MTH00207
NADH dehydrogenase subunit 5; Provisional
 150-268 7.53e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 164753 [Multi-domain]  Cd Length: 572  Bit Score: 38.21  E-value: 7.53e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 70955224  150 NPTLLTTMSiMSIALGGWMGLNQTQTRKILAFSSISHLGWMTMII-IYNPKLTLLTFYMYALMTTSIFLTLNTI-----N 223
Cdd:MTH00207 243 NPALLLTAS-LTMLMAGLSAMTECDMKKIIALSTLSQLGVMMASLgLGMPKLALFHLITHALFKALLFVCAGSLihshhH 321

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*
gi 70955224  224 TLKLSTLLISWTKTPMLNTTLMMTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:MTH00207 322 SQDLRTMGNLTNQMPLTTSCLLIANLALCGSPFLSGFYSKDLILE 366
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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