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Conserved domains on  [gi|702101336|gb|AIW07232|]
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cytochrome b, partial (mitochondrion) [Plectroglyphidodon aureus]

Protein Classification

cytochrome b( domain architecture ID 1000003)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) that is part of the mitochondrial respiratory chain; contributes to the generation of a proton gradient across the mitochondrial membrane that is then used for ATP synthesis

CATH:  1.20.810.10
Gene Symbol:  CYTB
Gene Ontology:  GO:0009055|GO:0046872|GO:0022904|GO:0005743|GO:0020037
PubMed:  2509716|8329437
SCOP:  4002208

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB super family cl31802
cytochrome b; Provisional
 10-270 0e+00

cytochrome b; Provisional


The actual alignment was detected with superfamily member MTH00131:

Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 561.20  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 702101336  10 MANLRKTHPLLKIANDALVDLPAPANISVWWNFGSLLGLCLAAQILTGLFLAMHYTSDIATAFSSVAHICRDVNYGWLIR 89
Cdd:MTH00131   1 MASLRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIR 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 702101336  90 NMHANGASFFFICIYLHIGRGLYYGSYLYKETWNVGVILLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYIGTSL 169
Cdd:MTH00131  81 NLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 702101336 170 VQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATLVHLIFLHETGSNNPTGLNSDADKISFHPYFSYKDLLGFAALLIALV 249
Cdd:MTH00131 161 VQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALT 240

                        250       260
                 ....*....|....*....|.
gi 702101336 250 SLALFSPNLLGDPDNFTPANP 270
Cdd:MTH00131 241 SLALFSPNLLGDPDNFTPANP 261
 
Name Accession Description Interval E-value
CYTB MTH00131
cytochrome b; Provisional
 10-270 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 561.20  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 702101336  10 MANLRKTHPLLKIANDALVDLPAPANISVWWNFGSLLGLCLAAQILTGLFLAMHYTSDIATAFSSVAHICRDVNYGWLIR 89
Cdd:MTH00131   1 MASLRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIR 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 702101336  90 NMHANGASFFFICIYLHIGRGLYYGSYLYKETWNVGVILLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYIGTSL 169
Cdd:MTH00131  81 NLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 702101336 170 VQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATLVHLIFLHETGSNNPTGLNSDADKISFHPYFSYKDLLGFAALLIALV 249
Cdd:MTH00131 161 VQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALT 240

                        250       260
                 ....*....|....*....|.
gi 702101336 250 SLALFSPNLLGDPDNFTPANP 270
Cdd:MTH00131 241 SLALFSPNLLGDPDNFTPANP 261
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 18-215 3.02e-91

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 268.47  E-value: 3.02e-91
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 702101336  18 PLLKIANDALVDLPAPANISVWWNFGSLLGLCLAAQILTGLFLAMHYTSDIATAFSSVAHICRDVNYGWLIRNMHANGAS 97
Cdd:cd00284    1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 702101336  98 FFFICIYLHIGRGLYYGSY--LYKETWNVGVILLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYIGTSLVQWIWG 175
Cdd:cd00284   81 MFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 702101336 176 GFSVDNATLTRFFAFHFLFPFVIAAATLVHLIFLHETGSN 215
Cdd:cd00284  161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
31-270 4.88e-90

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 272.05  E-value: 4.88e-90
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 702101336  31 PAPANISVWWNFGSLLGLCLAAQILTGLFLAMHYTSDIATAFSSVAHICRDVNYGWLIRNMHANGASFFFICIYLHIGRG 110
Cdd:COG1290   31 PFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRG 110

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 702101336 111 LYYGSylYKE----TWNVGVILLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYIGTSLVQWIWGGFSVDNATLTR 186
Cdd:COG1290  111 FFYGA--YKKprelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNR 188

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 702101336 187 FFAF-HFLFPFVIAAATLVHLIFLHETGSNNPTG----LNSDADKISFHPYFSYKDLLGFAALLIALVSLALFSPNllGD 261
Cdd:COG1290  189 FFALhVLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NP 266


                 ....*....
gi 702101336 262 PDNFTPANP 270
Cdd:COG1290  267 PPNYGPANP 275
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
27-213 1.38e-84

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 251.15  E-value: 1.38e-84
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 702101336   27 LVDLPAPANISVWWNFGSLLGLCLAAQILTGLFLAMHYTSDIATAFSSVAHICRDVNYGWLIRNMHANGASFFFICIYLH 106
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 702101336  107 IGRGLYYG--SYLYKETWNVGVILLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYIGTSLVQWIWGGFSVDNATL 184
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 702101336  185 TRFFAFHFLFPFVIAAATLVHLIFLHETG 213
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
 
Name Accession Description Interval E-value
CYTB MTH00131
cytochrome b; Provisional
 10-270 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 561.20  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 702101336  10 MANLRKTHPLLKIANDALVDLPAPANISVWWNFGSLLGLCLAAQILTGLFLAMHYTSDIATAFSSVAHICRDVNYGWLIR 89
Cdd:MTH00131   1 MASLRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIR 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 702101336  90 NMHANGASFFFICIYLHIGRGLYYGSYLYKETWNVGVILLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYIGTSL 169
Cdd:MTH00131  81 NLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 702101336 170 VQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATLVHLIFLHETGSNNPTGLNSDADKISFHPYFSYKDLLGFAALLIALV 249
Cdd:MTH00131 161 VQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALT 240

                        250       260
                 ....*....|....*....|.
gi 702101336 250 SLALFSPNLLGDPDNFTPANP 270
Cdd:MTH00131 241 SLALFSPNLLGDPDNFTPANP 261
CYTB MTH00119
cytochrome b; Provisional
 12-270 1.30e-180

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 501.35  E-value: 1.30e-180
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 702101336  12 NLRKTHPLLKIANDALVDLPAPANISVWWNFGSLLGLCLAAQILTGLFLAMHYTSDIATAFSSVAHICRDVNYGWLIRNM 91
Cdd:MTH00119   4 NLRKSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNL 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 702101336  92 HANGASFFFICIYLHIGRGLYYGSYLYKETWNVGVILLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYIGTSLVQ 171
Cdd:MTH00119  84 HANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVE 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 702101336 172 WIWGGFSVDNATLTRFFAFHFLFPFVIAAATLVHLIFLHETGSNNPTGLNSDADKISFHPYFSYKDLLGFAALLIALVSL 251
Cdd:MTH00119 164 WIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTL 243

                        250
                 ....*....|....*....
gi 702101336 252 ALFSPNLLGDPDNFTPANP 270
Cdd:MTH00119 244 ALFSPNLLGDPENFTPANP 262
CYTB MTH00074
cytochrome b; Provisional
 10-270 1.94e-178

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 496.13  E-value: 1.94e-178
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 702101336  10 MANLRKTHPLLKIANDALVDLPAPANISVWWNFGSLLGLCLAAQILTGLFLAMHYTSDIATAFSSVAHICRDVNYGWLIR 89
Cdd:MTH00074   2 AHPIRKTHPLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMR 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 702101336  90 NMHANGASFFFICIYLHIGRGLYYGSYLYKETWNVGVILLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYIGTSL 169
Cdd:MTH00074  82 NIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTL 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 702101336 170 VQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATLVHLIFLHETGSNNPTGLNSDADKISFHPYFSYKDLLGFAALLIALV 249
Cdd:MTH00074 162 VQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALA 241

                        250       260
                 ....*....|....*....|.
gi 702101336 250 SLALFSPNLLGDPDNFTPANP 270
Cdd:MTH00074 242 LLSLFSPNLLGDPDNFTPANP 262
CYTB MTH00100
cytochrome b; Provisional
 10-270 1.96e-177

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 493.39  E-value: 1.96e-177
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 702101336  10 MANLRKTHPLLKIANDALVDLPAPANISVWWNFGSLLGLCLAAQILTGLFLAMHYTSDIATAFSSVAHICRDVNYGWLIR 89
Cdd:MTH00100   1 MTNIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIR 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 702101336  90 NMHANGASFFFICIYLHIGRGLYYGSYLYKETWNVGVILLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYIGTSL 169
Cdd:MTH00100  81 YLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 702101336 170 VQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATLVHLIFLHETGSNNPTGLNSDADKISFHPYFSYKDLLGFAALLIALV 249
Cdd:MTH00100 161 VEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLM 240

                        250       260
                 ....*....|....*....|.
gi 702101336 250 SLALFSPNLLGDPDNFTPANP 270
Cdd:MTH00100 241 LLVLFSPDLLGDPDNYTPANP 261
CYTB MTH00191
cytochrome b; Provisional
 13-270 8.68e-175

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 486.34  E-value: 8.68e-175
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 702101336  13 LRKTHPLLKIANDALVDLPAPANISVWWNFGSLLGLCLAAQILTGLFLAMHYTSDIATAFSSVAHICRDVNYGWLIRNMH 92
Cdd:MTH00191   1 MRKTHPLLKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIH 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 702101336  93 ANGASFFFICIYLHIGRGLYYGSYLYKETWNVGVILLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYIGTSLVQW 172
Cdd:MTH00191  81 ANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQW 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 702101336 173 IWGGFSVDNATLTRFFAFHFLFPFVIAAATLVHLIFLHETGSNNPTGLNSDADKISFHPYFSYKDLLGFAALLIALVSLA 252
Cdd:MTH00191 161 LWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLV 240

                        250
                 ....*....|....*...
gi 702101336 253 LFSPNLLGDPDNFTPANP 270
Cdd:MTH00191 241 LFSPNLLGDPENFIPANP 258
CYTB MTH00156
cytochrome b; Provisional
 20-270 2.68e-168

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 469.26  E-value: 2.68e-168
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 702101336  20 LKIANDALVDLPAPANISVWWNFGSLLGLCLAAQILTGLFLAMHYTSDIATAFSSVAHICRDVNYGWLIRNMHANGASFF 99
Cdd:MTH00156   1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 702101336 100 FICIYLHIGRGLYYGSYLYKETWNVGVILLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYIGTSLVQWIWGGFSV 179
Cdd:MTH00156  81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 702101336 180 DNATLTRFFAFHFLFPFVIAAATLVHLIFLHETGSNNPTGLNSDADKISFHPYFSYKDLLGFAALLIALVSLALFSPNLL 259
Cdd:MTH00156 161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240

                        250
                 ....*....|.
gi 702101336 260 GDPDNFTPANP 270
Cdd:MTH00156 241 GDPENFIPANP 251
CYTB MTH00145
cytochrome b; Provisional
 13-270 9.07e-162

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 453.59  E-value: 9.07e-162
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 702101336  13 LRKTHPLLKIANDALVDLPAPANISVWWNFGSLLGLCLAAQILTGLFLAMHYTSDIATAFSSVAHICRDVNYGWLIRNMH 92
Cdd:MTH00145   5 LRKSHPVLKVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLH 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 702101336  93 ANGASFFFICIYLHIGRGLYYGSYLYKETWNVGVILLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYIGTSLVQW 172
Cdd:MTH00145  85 ANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKMLVEW 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 702101336 173 IWGGFSVDNATLTRFFAFHFLFPFVIAAATLVHLIFLHETGSNNPTGLNSDADKISFHPYFSYKDLLGFAALLIALVSLA 252
Cdd:MTH00145 165 VWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLVFLV 244

                        250
                 ....*....|....*...
gi 702101336 253 LFSPNLLGDPDNFTPANP 270
Cdd:MTH00145 245 LFFPNLLGDPENFIPANP 262
CYTB MTH00034
cytochrome b; Validated
 13-270 3.67e-157

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 442.22  E-value: 3.67e-157
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 702101336  13 LRKTHPLLKIANDALVDLPAPANISVWWNFGSLLGLCLAAQILTGLFLAMHYTSDIATAFSSVAHICRDVNYGWLIRNMH 92
Cdd:MTH00034   4 LRKSHPLFKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIH 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 702101336  93 ANGASFFFICIYLHIGRGLYYGSYLYKETWNVGVILLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYIGTSLVQW 172
Cdd:MTH00034  84 ANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQW 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 702101336 173 IWGGFSVDNATLTRFFAFHFLFPFVIAAATLVHLIFLHETGSNNPTGLNSDADKISFHPYFSYKDLLGFAALLIALVSLA 252
Cdd:MTH00034 164 IWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLA 243

                        250
                 ....*....|....*...
gi 702101336 253 LFSPNLLGDPDNFTPANP 270
Cdd:MTH00034 244 LLFPTALNDPENFIPANP 261
CYTB MTH00016
cytochrome b; Validated
 13-270 1.76e-153

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 432.95  E-value: 1.76e-153
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 702101336  13 LRKTHPLLKIANDALVDLPAPANISVWWNFGSLLGLCLAAQILTGLFLAMHYTSDIATAFSSVAHICRDVNYGWLIRNMH 92
Cdd:MTH00016   5 MRKTHPLIKIMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLH 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 702101336  93 ANGASFFFICIYLHIGRGLYYGSYLYKETWNVGVILLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYIGTSLVQW 172
Cdd:MTH00016  85 ANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKMLVQW 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 702101336 173 IWGGFSVDNATLTRFFAFHFLFPFVIAAATLVHLIFLHETGSNNPTGLNSDADKISFHPYFSYKDLLGFAALLIALVSLA 252
Cdd:MTH00016 165 LWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLLSVV 244

                        250
                 ....*....|....*...
gi 702101336 253 LFSPNLLGDPDNFTPANP 270
Cdd:MTH00016 245 LLWPNILGDPENFIPANP 262
CYTB MTH00224
cytochrome b; Provisional
 13-270 1.27e-131

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 377.34  E-value: 1.27e-131
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 702101336  13 LRKTHPLLKIANDALVDLPAPANISVWWNFGSLLGLCLAAQILTGLFLAMHYTSDIATAFSSVAHICRDVNYGWLIRNMH 92
Cdd:MTH00224   5 FRTTHPAIKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIH 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 702101336  93 ANGASFFFICIYLHIGRGLYYGSYLYKETWNVGVILLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYIGTSLVQW 172
Cdd:MTH00224  85 ANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEW 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 702101336 173 IWGGFSVDNATLTRFFAFHFLFPFVIAAATLVHLIFLHETGSNNPTGLNSDADKISFHPYFSYKDLLGFAALLIALVSLA 252
Cdd:MTH00224 165 IWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLSLMV 244

                        250
                 ....*....|....*...
gi 702101336 253 LFSPNLLGDPDNFTPANP 270
Cdd:MTH00224 245 LFEPNLFTDPENFLMANP 262
CYTB MTH00022
cytochrome b; Validated
 13-270 1.33e-128

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 369.80  E-value: 1.33e-128
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 702101336  13 LRKTHPLLKIANDALVDLPAPANISVWWNFGSLLGLCLAAQILTGLFLAMHYTSDIATAFSSVAHICRDVNYGWLIRNMH 92
Cdd:MTH00022   3 LRKENPLLSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLH 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 702101336  93 ANGASFFFICIYLHIGRGLYYGSYLYKETWNVGVILLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYIGTSLVQW 172
Cdd:MTH00022  83 ANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQW 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 702101336 173 IWGGFSVDNATLTRFFAFHFLFPFVIAAATLVHLIFLHETGSNNPTGLNSDADKISFHPYFSYKDLLGFAALLIALVSLA 252
Cdd:MTH00022 163 VWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIV 242

                        250
                 ....*....|....*...
gi 702101336 253 LFSPNLLGDPDNFTPANP 270
Cdd:MTH00022 243 YFAPNLLGDPENFIQANS 260
CYTB MTH00053
cytochrome b; Provisional
 13-270 3.13e-120

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 348.62  E-value: 3.13e-120
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 702101336  13 LRKTHPLLKIANDALVDLPAPANISVWWNFGSLLGLCLAAQILTGLFLAMHYTSDIATAFSSVAHICRDVNYGWLIRNMH 92
Cdd:MTH00053   5 IRKENPVISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLH 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 702101336  93 ANGASFFFICIYLHIGRGLYYGSYLYKETWNVGVILLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYIGTSLVQW 172
Cdd:MTH00053  85 ANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRW 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 702101336 173 IWGGFSVDNATLTRFFAFHFLFPFVIAAATLVHLIFLHETGSNNPTGLNSDADKISFHPYFSYKDLLGFAALLIALVSLA 252
Cdd:MTH00053 165 VWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIILSIIV 244

                        250
                 ....*....|....*...
gi 702101336 253 LFSPNLLGDPDNFTPANP 270
Cdd:MTH00053 245 FLFPYSLGDAENFKQANP 262
CYTB MTH00033
cytochrome b; Provisional
 13-270 3.14e-94

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 282.60  E-value: 3.14e-94
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 702101336  13 LRKTHpLLKIANDaLVDLPAPANISVWWNFGSLLGLCLAAQILTGLFLAMHYTSDIATAFSSVAHICRDVNYGWLIRNMH 92
Cdd:MTH00033   3 LRKTG-LLEPVND-IIDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVH 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 702101336  93 ANGASFFFICIYLHIGRGLYYGSYLYKETWNVGVILLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYIGTSLVQW 172
Cdd:MTH00033  81 ANGASLFFICVYCHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEW 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 702101336 173 IWGGFSVDNATLTRFFAFHFLFPFVIAAATLVHLIFLHETGSNNPTGLNSDADKISFHPYFSYKDLLGFAALLIALVSLA 252
Cdd:MTH00033 161 IWGGFSVSNCTLNRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVIIG 240

                        250       260
                 ....*....|....*....|
gi 702101336 253 LFS--PNLLGDPDNFTPANP 270
Cdd:MTH00033 241 IEPriETLLQDPENFIQANP 260
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 18-215 3.02e-91

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 268.47  E-value: 3.02e-91
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 702101336  18 PLLKIANDALVDLPAPANISVWWNFGSLLGLCLAAQILTGLFLAMHYTSDIATAFSSVAHICRDVNYGWLIRNMHANGAS 97
Cdd:cd00284    1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 702101336  98 FFFICIYLHIGRGLYYGSY--LYKETWNVGVILLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYIGTSLVQWIWG 175
Cdd:cd00284   81 MFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 702101336 176 GFSVDNATLTRFFAFHFLFPFVIAAATLVHLIFLHETGSN 215
Cdd:cd00284  161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
CYTB MTH00086
cytochrome b; Provisional
 24-270 6.19e-91

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 272.97  E-value: 6.19e-91
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 702101336  24 NDALVDLPAPANISVWWNFGSLLGLCLAAQILTGLFLAMHYTSDIATAFSSVAHICRDVNYGWLIRNMHANGASFFFICI 103
Cdd:MTH00086   4 NSLVVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFL 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 702101336 104 YLHIGRGLYYGSYLYKETWNVGVILLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYIGTSLVQWIWGGFSVDNAT 183
Cdd:MTH00086  84 YLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVSSAT 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 702101336 184 LTRFFAFHFLFPFVIAAATLVHLIFLHETGSNNPTGLNSDADKISFHPYFSYKDLLGFAALLIaLVSLALFSPNLLGDPD 263
Cdd:MTH00086 164 LKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYNIIFWLV-FIIFSLFYPFNLGDPE 242


                 ....*..
gi 702101336 264 NFTPANP 270
Cdd:MTH00086 243 MFIEADP 249
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
31-270 4.88e-90

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 272.05  E-value: 4.88e-90
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 702101336  31 PAPANISVWWNFGSLLGLCLAAQILTGLFLAMHYTSDIATAFSSVAHICRDVNYGWLIRNMHANGASFFFICIYLHIGRG 110
Cdd:COG1290   31 PFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRG 110

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 702101336 111 LYYGSylYKE----TWNVGVILLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYIGTSLVQWIWGGFSVDNATLTR 186
Cdd:COG1290  111 FFYGA--YKKprelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNR 188

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 702101336 187 FFAF-HFLFPFVIAAATLVHLIFLHETGSNNPTG----LNSDADKISFHPYFSYKDLLGFAALLIALVSLALFSPNllGD 261
Cdd:COG1290  189 FFALhVLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NP 266


                 ....*....
gi 702101336 262 PDNFTPANP 270
Cdd:COG1290  267 PPNYGPANP 275
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
27-213 1.38e-84

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 251.15  E-value: 1.38e-84
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 702101336   27 LVDLPAPANISVWWNFGSLLGLCLAAQILTGLFLAMHYTSDIATAFSSVAHICRDVNYGWLIRNMHANGASFFFICIYLH 106
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 702101336  107 IGRGLYYG--SYLYKETWNVGVILLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYIGTSLVQWIWGGFSVDNATL 184
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 702101336  185 TRFFAFHFLFPFVIAAATLVHLIFLHETG 213
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
CYTB MTH00046
cytochrome b; Validated
 27-270 7.55e-63

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 200.98  E-value: 7.55e-63
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 702101336  27 LVDLPAPANISVWWNFGSLLGLCLAAQILTGLFLAMHYTSDIATAFSSVAHICRDVNYGWLIRNMHANGASFFFICIYLH 106
Cdd:MTH00046   9 LIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLFILLFIH 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 702101336 107 IGRGLYYGSYLYKETWNVGVILLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYIGTSLVQWIWGGFSVDNATLTR 186
Cdd:MTH00046  89 MGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFSVTGVTLVR 168

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 702101336 187 FFAFHFLFPFVIAAATLVHLIFLHETGSNNPTGL-NSDADKISFHPYFSYKDLLGFAALLIALVSLALFSPNLLGDPDNF 265
Cdd:MTH00046 169 VFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSsNGYSDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPDLVLDIEAY 248


                 ....*
gi 702101336 266 TPANP 270
Cdd:MTH00046 249 LEADP 253
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
97-262 2.32e-47

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 155.48  E-value: 2.32e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 702101336   97 SFFFICIYLHIGRGLYYGSYLYKE--TWNVGVILLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYIGTSLVQWIW 174
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 702101336  175 GGFSVDNATLTRFFAF-HFLFPFVIAAATLVHLIFLHETGSNNPTGLNSDADKISFHPYFSYKDLLGFAALLIALVSLAL 253
Cdd:pfam13631  81 GGPFPGTATIPRFYALhILLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 702101336  254 FSPNLLGDP 262
Cdd:pfam13631 161 INPIWLGGP 169
PRK03735 PRK03735
cytochrome b6; Provisional
 31-186 4.61e-35

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 125.59  E-value: 4.61e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 702101336  31 PAPANISVWWNFGSLLGLCLAAQILTGLFLAMHYTSDIATAFSSVAHICRDVNYGWLIRNMHANGASFFFICIYLHIGRG 110
Cdd:PRK03735  33 PAHHFSAFVYCFGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRV 112

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 702101336 111 LYYGSYLYKE--TWNVGVILLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYIGTSLVQWIWGGFSVDNATLTR 186
Cdd:PRK03735 113 FFTGGYKKPRelNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTR 190
petB CHL00070
cytochrome b6
 33-217 2.94e-29

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 110.20  E-value: 2.94e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 702101336  33 PANISVWWNFGSLLGLCLAAQILTGLFLAMHYTSDIATAFSSVAHICRDVNYGWLIRNMHANGASFFFICIYLHIGRGLY 112
Cdd:CHL00070  27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYL 106

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 702101336 113 YGSYLYKE--TWNVGVILLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYIGTSLVQWIWGGFSVDNATLTRFFAF 190
Cdd:CHL00070 107 TGGFKKPRelTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSL 186

                        170       180
                 ....*....|....*....|....*...
gi 702101336 191 HFLFPFVIAAA-TLVHLIFLHETGSNNP 217
Cdd:CHL00070 187 HTFVLPLLTAVfMLMHFLMIRKQGISGP 214
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 216-270 2.15e-13

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 65.74  E-value: 2.15e-13
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 702101336 216 NPTGLNSDADKISFHPYFSYKDLLGFAALLIALVSLALFSPNLLGDPDNFTPANP 270
Cdd:cd00290    1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANP 55
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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