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Conserved domains on  [gi|701219279|ref|YP_009094349|]
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triple gene block protein 2 [Asian prunus virus 1]

Protein Classification

Plant_vir_prot domain-containing protein( domain architecture ID 10473625)

Plant_vir_prot domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Plant_vir_prot pfam01307
Plant viral movement protein; This family includes several known plant viral movement proteins ...
 5-105 3.67e-34

Plant viral movement protein; This family includes several known plant viral movement proteins from a number of different ssRNA plant virus families including potexviruses, hordeiviruses and carlaviruses.


:

Pssm-ID: 279627  Cd Length: 100  Bit Score: 113.67  E-value: 3.67e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 701219279    5 TPPPDNTRVLLPIAVGLGVGIVIWCLTRSTLPSVGDNVHSLPHGGNYLDGTKRISYCGPRdsFPSSNLFKGGTFSAICIV 84
Cdd:pfam01307   1 APPPDYSKVVLAIALGLAFGLLIFTLQRHTLPHVGDNIHNLPHGGQYRDGTKSILYNSPR--AGSSSSISSRTLFLLAVL 78

                          90       100
                  ....*....|....*....|..
gi 701219279   85 VLLVFAIHVSELFNRPN-RRTC 105
Cdd:pfam01307  79 ILLILLIYASHYLSRSPhSRRC 100
 
Name Accession Description Interval E-value
Plant_vir_prot pfam01307
Plant viral movement protein; This family includes several known plant viral movement proteins ...
 5-105 3.67e-34

Plant viral movement protein; This family includes several known plant viral movement proteins from a number of different ssRNA plant virus families including potexviruses, hordeiviruses and carlaviruses.


Pssm-ID: 279627  Cd Length: 100  Bit Score: 113.67  E-value: 3.67e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 701219279    5 TPPPDNTRVLLPIAVGLGVGIVIWCLTRSTLPSVGDNVHSLPHGGNYLDGTKRISYCGPRdsFPSSNLFKGGTFSAICIV 84
Cdd:pfam01307   1 APPPDYSKVVLAIALGLAFGLLIFTLQRHTLPHVGDNIHNLPHGGQYRDGTKSILYNSPR--AGSSSSISSRTLFLLAVL 78

                          90       100
                  ....*....|....*....|..
gi 701219279   85 VLLVFAIHVSELFNRPN-RRTC 105
Cdd:pfam01307  79 ILLILLIYASHYLSRSPhSRRC 100
 
Name Accession Description Interval E-value
Plant_vir_prot pfam01307
Plant viral movement protein; This family includes several known plant viral movement proteins ...
 5-105 3.67e-34

Plant viral movement protein; This family includes several known plant viral movement proteins from a number of different ssRNA plant virus families including potexviruses, hordeiviruses and carlaviruses.


Pssm-ID: 279627  Cd Length: 100  Bit Score: 113.67  E-value: 3.67e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 701219279    5 TPPPDNTRVLLPIAVGLGVGIVIWCLTRSTLPSVGDNVHSLPHGGNYLDGTKRISYCGPRdsFPSSNLFKGGTFSAICIV 84
Cdd:pfam01307   1 APPPDYSKVVLAIALGLAFGLLIFTLQRHTLPHVGDNIHNLPHGGQYRDGTKSILYNSPR--AGSSSSISSRTLFLLAVL 78

                          90       100
                  ....*....|....*....|..
gi 701219279   85 VLLVFAIHVSELFNRPN-RRTC 105
Cdd:pfam01307  79 ILLILLIYASHYLSRSPhSRRC 100
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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