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Conserved domains on  [gi|699976675|gb|AIU45553|]
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NADH dehydrogenase subunit 5, partial (mitochondrion) [Chorotypus fenestratus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND5 super family cl33362
NADH dehydrogenase subunit 5; Provisional
 1-214 2.65e-45

NADH dehydrogenase subunit 5; Provisional


The actual alignment was detected with superfamily member MTH00165:

Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 158.00  E-value: 2.65e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976675   1 GSYIHSYGDFQDVRYMGSLVYYMPYTSICFSLSNLSLCGLPFLSGYYSKDLILELMNMNLLGLLTFFIFFFGTGLTAMYT 80
Cdd:MTH00165 313 GSIIHNMSNSQDIRFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMVSMSNLNFFIFFLFFFSTGLTVSYS 392

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976675  81 FRLFFFIQFDYVKNLSLINVNDNCHYMNWGMFGLMIVSVFGGSFLMWLIFPLPSLIVLPMFLSCMTLLSIFLGVYIGYFL 160
Cdd:MTH00165 393 FRLIYYSMSGDFNLKSLNNLSDESKFMLKSMILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLTLFVILLGGWLGYEL 472

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 699976675 161 FSFTFVYK-KFMFIYSVNLFFGSMCYMPFLSTSFISLFPLLSGLKILKIYDYGWL 214
Cdd:MTH00165 473 SLMSLSYNlKSLKNYKLSSFLGSMWFMPFLSTYGISYYPLNLGSLSLKSFDQGWS 527
 
Name Accession Description Interval E-value
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
 1-214 2.65e-45

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 158.00  E-value: 2.65e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976675   1 GSYIHSYGDFQDVRYMGSLVYYMPYTSICFSLSNLSLCGLPFLSGYYSKDLILELMNMNLLGLLTFFIFFFGTGLTAMYT 80
Cdd:MTH00165 313 GSIIHNMSNSQDIRFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMVSMSNLNFFIFFLFFFSTGLTVSYS 392

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976675  81 FRLFFFIQFDYVKNLSLINVNDNCHYMNWGMFGLMIVSVFGGSFLMWLIFPLPSLIVLPMFLSCMTLLSIFLGVYIGYFL 160
Cdd:MTH00165 393 FRLIYYSMSGDFNLKSLNNLSDESKFMLKSMILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLTLFVILLGGWLGYEL 472

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 699976675 161 FSFTFVYK-KFMFIYSVNLFFGSMCYMPFLSTSFISLFPLLSGLKILKIYDYGWL 214
Cdd:MTH00165 473 SLMSLSYNlKSLKNYKLSSFLGSMWFMPFLSTYGISYYPLNLGSLSLKSFDQGWS 527
NADH5_C pfam06455
NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of ...
 79-214 5.93e-22

NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of several NADH dehydrogenase subunit 5 proteins and is found in conjunction with pfam00361 and pfam00662.


Pssm-ID: 368917 [Multi-domain]  Cd Length: 181  Bit Score: 88.38  E-value: 5.93e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976675   79 YTFRLFFFIQFDYVKNLSLINVNDNCHYMNWGMFGLMIVSVFGGSFLMWLIFPLPSLIVLPMFLSCMTLLSIFLGVYIGY 158
Cdd:pfam06455   1 YSFRLIYYVMTGSPRFSSLSPINENNPIMINPIKRLAIGSIIGGSLLSWLIFPKPPMMTMPLYLKLLALLVTILGLLLGL 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 699976675  159 FLFSFTFVYKKFMFIYSVNLFFGSMCYMPFLSTSFISLFPLLSGLKILKIYDYGWL 214
Cdd:pfam06455  81 ELSNLSNKQLKKSLNFNLHSFSGSMWFFPNLSHRLIPKLSLKLGQKLAKQIDQGWS 136
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 1-161 1.33e-13

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 68.64  E-value: 1.33e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976675   1 GSYIHSYGDfQDVRYMGSLVYYMPYTSICFSLSNLSLCGLPFLSGYYSKDLILELMNMNLLGLLTFFIFFFG-TGLTAMY 79
Cdd:COG1009  345 GSVIHATGT-RDIRKMGGLRKKMPITAITFLIGALSLAGIPPFAGFFSKEAILEAALEAGGLGPLLLAVALLgAFLTAFY 423

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976675  80 TFRLFFFIQFDYVKNLSLINVNDNCHYMNWGMFGLMIVSVFGGSFLMWL---------IFPLPSLIVLPMFLSCMTLLSI 150
Cdd:COG1009  424 SFRLFFLVFFGKPRPKTPKHPHESPWLMTLPLVVLAVLSLVLGLLLPGLlegllapaaVLGGELHLAHGLLLNALPLLLS 503

                        170
                 ....*....|.
gi 699976675 151 FLGVYIGYFLF 161
Cdd:COG1009  504 LLGIALGYLLY 514
 
Name Accession Description Interval E-value
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
 1-214 2.65e-45

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 158.00  E-value: 2.65e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976675   1 GSYIHSYGDFQDVRYMGSLVYYMPYTSICFSLSNLSLCGLPFLSGYYSKDLILELMNMNLLGLLTFFIFFFGTGLTAMYT 80
Cdd:MTH00165 313 GSIIHNMSNSQDIRFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMVSMSNLNFFIFFLFFFSTGLTVSYS 392

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976675  81 FRLFFFIQFDYVKNLSLINVNDNCHYMNWGMFGLMIVSVFGGSFLMWLIFPLPSLIVLPMFLSCMTLLSIFLGVYIGYFL 160
Cdd:MTH00165 393 FRLIYYSMSGDFNLKSLNNLSDESKFMLKSMILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLTLFVILLGGWLGYEL 472

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 699976675 161 FSFTFVYK-KFMFIYSVNLFFGSMCYMPFLSTSFISLFPLLSGLKILKIYDYGWL 214
Cdd:MTH00165 473 SLMSLSYNlKSLKNYKLSSFLGSMWFMPFLSTYGISYYPLNLGSLSLKSFDQGWS 527
ND5 MTH00151
NADH dehydrogenase subunit 5; Provisional
 1-214 2.72e-33

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214436 [Multi-domain]  Cd Length: 565  Bit Score: 124.96  E-value: 2.72e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976675   1 GSYIHSYGDFQDVRYMGSLVYYMPYTSICFSLSNLSLCGLPFLSGYYSKDLILELMNMNLLGLLTFFIFFFGTGLTAMYT 80
Cdd:MTH00151 310 GSIIHSSSGTQDIRLLGSLFLSLPLTSGCLNISSLSLCGAPFLSGFYSKDLILESSLMSPTSLLMVLLMFVGVGLTALYS 389

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976675  81 FRLFFFIQFDYVKNLSLINVNDNCHYMNWGMFGLMIVSVFGGSFLMWLIFPLPSLIVLPMFLSCMTLLSIFLGVYIGYFL 160
Cdd:MTH00151 390 ARLSFCLVWGSMKSSSLSSKSDEDFYVSLPMLLLSLGALIGGKLLQSLFEGFSEEFFLPSYLKLLIGFVILLGLFLSFGF 469

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....
gi 699976675 161 FSFTFVYKKFMFIYSvnlFFGSMCYMPFLSTSFISLFPLLSGLKILKIYDYGWL 214
Cdd:MTH00151 470 WDSGFSSSKMVKLSF---FFSSMWFLSPLSSQPLKSLSLKLSNSSMKSLDMGWL 520
ND5 MTH00209
NADH dehydrogenase subunit 5; Provisional
 1-213 2.31e-31

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177252 [Multi-domain]  Cd Length: 564  Bit Score: 119.75  E-value: 2.31e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976675   1 GSYIHSYGDFQDVRYMGSLVYYMPYTSICFSLSNLSLCGLPFLSGYYSKDLILELMNMNLLGLLTFFIFFFGTGLTAMYT 80
Cdd:MTH00209 309 GNIIHSHGHSQDIRMVGNLWYQMPITSICLNIANLSLCGIPFLAGFYSKDLILESMLESNMPIMTLILMFLSTSLTAAYS 388

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976675  81 FRLFFFIQFDYVKNLSLINVNDNCHYMNWGMFGLMIVSVFGGSFLMWLIFPLPSLIVLPMFLSCMTLLSIFLGVYIGYFL 160
Cdd:MTH00209 389 MRLSYFSLWGPNSSKSLNSSFDQNKLNLKPMLVLTLGSITGGSVMSWVMVPSVNSVVLPWFLKLLPIMLILFGVLLMYMV 468

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|...
gi 699976675 161 FSFTFVYKKFmfiYSVNLFFGSMCYMPFLSTSFISLFPLLSGLKILKIYDYGW 213
Cdd:MTH00209 469 LKKNFFLIKG---YKVNYFLSQMWFLPDLSSQPVNKFTMKLSKTMLKLLDQGW 518
ND5 MTH00207
NADH dehydrogenase subunit 5; Provisional
 1-214 1.22e-26

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 164753 [Multi-domain]  Cd Length: 572  Bit Score: 106.39  E-value: 1.22e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976675   1 GSYIHSYGDFQDVRYMGSLVYYMPYTSICFSLSNLSLCGLPFLSGYYSKDLILELMNMNLLGLLTFFIFFFGTGLTAMYT 80
Cdd:MTH00207 313 GSLIHSHHHSQDLRTMGNLTNQMPLTTSCLLIANLALCGSPFLSGFYSKDLILESSLFYPHNSLMILMIFLATALTAAYS 392

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976675  81 FRLFFFIQFDYVKNLSLINVNDNCHYMNWGMFGLMIVSVFGGSFLMWLIFPLPSLIVLPMFLSCMTLLSIFLGVYIGYFL 160
Cdd:MTH00207 393 TRFTLAVLWSPNSSSPYHHLEDEDKSLTTPMLLLTLGAITSGSALNWWLPTPQEEPILPLQYKLLPLLVVTLGALLAWLF 472

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 699976675 161 FSFTFVYKKFMFIYSVNLFFG-SMCYMPFLSTSFISLFPLLSGLKILKIYDYGWL 214
Cdd:MTH00207 473 TTPNITKTPLLINNPLSHFAScLMWFLVPLSSQFIMSTPMNLSHNYLKLLDQGWL 527
NADH5_C pfam06455
NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of ...
 79-214 5.93e-22

NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of several NADH dehydrogenase subunit 5 proteins and is found in conjunction with pfam00361 and pfam00662.


Pssm-ID: 368917 [Multi-domain]  Cd Length: 181  Bit Score: 88.38  E-value: 5.93e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976675   79 YTFRLFFFIQFDYVKNLSLINVNDNCHYMNWGMFGLMIVSVFGGSFLMWLIFPLPSLIVLPMFLSCMTLLSIFLGVYIGY 158
Cdd:pfam06455   1 YSFRLIYYVMTGSPRFSSLSPINENNPIMINPIKRLAIGSIIGGSLLSWLIFPKPPMMTMPLYLKLLALLVTILGLLLGL 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 699976675  159 FLFSFTFVYKKFMFIYSVNLFFGSMCYMPFLSTSFISLFPLLSGLKILKIYDYGWL 214
Cdd:pfam06455  81 ELSNLSNKQLKKSLNFNLHSFSGSMWFFPNLSHRLIPKLSLKLGQKLAKQIDQGWS 136
ND5 MTH00208
NADH dehydrogenase subunit 5; Provisional
 1-213 1.51e-20

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177251 [Multi-domain]  Cd Length: 628  Bit Score: 88.87  E-value: 1.51e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976675   1 GSYIHSYGDFQDVRYMGSLVYYMPYTSICFSLSNLSLCGLPFLSGYYSKDLILELMNMNLLGLLTFFIFFFGTGLTAMYT 80
Cdd:MTH00208 370 GSIIHSLNNEQDLRKMGGLSFLLPVTSSCIILGSLALMGTPFLAGFYSKDLILEAGLASISNLLSIILALIATLLTAVYS 449

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976675  81 FRLFFFIQFDYVKNLSLINVNDNCHYMNWGMFGLMIVSVFGGSFLMWLIFPLPSlIVLPMFLSCMTLLSIFLGVyigYFL 160
Cdd:MTH00208 450 FRIIFFCFLNNPSFSPLSPISEENPNLTNPLLRLAIGTIISGWFFSNFVFNLPP-LTLPLILKSLPLIVTIIGA---AFS 525

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....
gi 699976675 161 FSFTFVYKKFMFIYSVNLFFGSMCYMPFLSTSFISLFPLLSGLK-ILKIYDYGW 213
Cdd:MTH00208 526 FSFLLSLSSNPINSNFFSFLSNQWFFVNISHSIIISFSFFTSLFgSTRTLDRGW 579
ND5 MTH00211
NADH dehydrogenase subunit 5; Provisional
 1-214 9.31e-20

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214459 [Multi-domain]  Cd Length: 597  Bit Score: 86.93  E-value: 9.31e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976675   1 GSYIHSYGDFQDVRYMGSLVYYMPYTSICFSLSNLSLCGLPFLSGYYSKDLILELMNMNLLGLLTFFIFFFGTGLTAMYT 80
Cdd:MTH00211 338 GSIIHGLNNEQDIRKMGGLSKNLPFTSSCLFLGSLALMGFPFLSGFFSKDLILESMNGSYLNAWALLLTLLATSLTAAYS 417

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976675  81 FRLFFFIQFDYVKNLSLINVNDNCHYMNWGMFGLMIVSVFGGSFLMWLIFPLPSLIV-LPMFLSCMTLLSIFLGVYIGYF 159
Cdd:MTH00211 418 FRLIFLSLGGYPRFLSLSPINENYKLLKNPLKRLALGSILAGFIITSNLPPEKPEILsLPFLLKLMPLLVTIVGLLLGLE 497

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 699976675 160 LFSFTfvyKKFMFIYSVNLFFGSMCYMPFLSTSFISLFPLLSGLKILKIYDYGWL 214
Cdd:MTH00211 498 LVNLT---HKQLKTSTLSFSNMLGYYPPIIHRLLPKLSLKWGQTLSTHLMDLGWY 549
ND5 MTH00066
NADH dehydrogenase subunit 5; Provisional
 1-183 1.49e-17

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214416 [Multi-domain]  Cd Length: 598  Bit Score: 80.34  E-value: 1.49e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976675   1 GSYIHSYGDFQDVRYMGSLVYYMPYTSICFSLSNLSLCGLPFLSGYYSKDLILELMNMNLLGLLTFFIFFFGTGLTAMYT 80
Cdd:MTH00066 341 GSIIHSLNDEQDIRKMGGLQKALPITTSCLTIGSLALTGTPFLAGFFSKDAIIEAMNTSNLNSWALILTLIATSFTAVYS 420

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976675  81 FRLFFFIQFDYVKNLSLINVNDNCHYMNWGMFGLMIVSVFGGSFLMWLIFPL-PSLIVLPMFLSCMTLLSIFLGVYIGYF 159
Cdd:MTH00066 421 FRIIYFSSMKFPRSLPLSPINENNPLIINPIKRLAWGSIIAGLLIIFNILPMkPQILTMPTFMKLAALLVTLLGLLIALD 500

                        170       180
                 ....*....|....*....|....*.
gi 699976675 160 LFSFTF--VYKKFMFIYSVNLFFGSM 183
Cdd:MTH00066 501 LAKITSktTPKTKMHSFSNLLAFFPT 526
PRK06590 PRK06590
NADH:ubiquinone oxidoreductase subunit L; Reviewed
 1-161 4.11e-16

NADH:ubiquinone oxidoreductase subunit L; Reviewed


Pssm-ID: 235836 [Multi-domain]  Cd Length: 624  Bit Score: 75.97  E-value: 4.11e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976675   1 GSYIHSYGDFQDVRYMGSLVYYMPYTSICFSLSNLSLCGLPFLSGYYSKDLILElMNMNLLGLLTFFIFFFGTGLTAMYT 80
Cdd:PRK06590 351 GSVIHAMHHEQDIRKMGGLRKKMPVTYATFLIGTLALIGIPPFAGFFSKDEILE-AAFANGHINLFVAGLVGAFLTAFYS 429

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976675  81 FRLFFFIQFDYVKnlsliNVNDNCH----YMNWGMFGLMIVSVFGG-----SFLMWLIFP-----LPSLIVLPMFLSCMT 146
Cdd:PRK06590 430 FRLIFLVFHGKEK-----EKIHHPHespaVMTLPLIVLAVLSVFAGalivpPFLGVLPLTtelahGEAEHHLPVWVALLP 504

                        170
                 ....*....|....*
gi 699976675 147 LLSIFLGVYIGYFLF 161
Cdd:PRK06590 505 LVVALAGIALAWLLY 519
ND5 MTH00108
NADH dehydrogenase subunit 5; Provisional
 1-179 9.06e-16

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177170 [Multi-domain]  Cd Length: 602  Bit Score: 75.27  E-value: 9.06e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976675   1 GSYIHSYGDFQDVRYMGSLVYYMPYTSICFSLSNLSLCGLPFLSGYYSKDLILELMNMNLLGLLTFFIFFFGTGLTAMYT 80
Cdd:MTH00108 344 GSIIHNLNDEQDIRKMGGLFKTLPFTSTALIIGSLALTGMPFLTGFYSKDLIIEAANTSYTNAWALLITLIATSLTAAYS 423

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976675  81 FRLFFFIQFDYVKNLSLINVNDNCHYMNWGMFGLMIVSVFGGSFLMWLIFPL-PSLIVLPMFLSCMTLLSIFLGVYIGYF 159
Cdd:MTH00108 424 TRIIFFALLGQPRFPPLITINENNPLLINPIKRLLLGSIFAGFLISNNIPPTtIPQMTMPLYLKLTALAVTILGFILALE 503

                        170       180
                 ....*....|....*....|
gi 699976675 160 LFSFTfvyKKFMFIYSVNLF 179
Cdd:MTH00108 504 LNLLT---NNLKFKYPSNTF 520
ND5 MTH00004
NADH dehydrogenase subunit 5; Validated
 1-157 9.81e-16

NADH dehydrogenase subunit 5; Validated


Pssm-ID: 214398 [Multi-domain]  Cd Length: 602  Bit Score: 75.20  E-value: 9.81e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976675   1 GSYIHSYGDFQDVRYMGSLVYYMPYTSICFSLSNLSLCGLPFLSGYYSKDLILELMNMNLLGLLTFFIFFFGTGLTAMYT 80
Cdd:MTH00004 343 GSIIHNLNNEQDIRKMGGLQKTLPITSSCLTIGNLALMGTPFLSGFYSKDTIIETLNTSYLNAWALLLTLLATSFTAAYS 422

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 699976675  81 FRLFFFIQFDYVKNLSLINVNDNCHYMNWGMFGLMIVSVFGGSFLMWLIFPL-PSLIVLPMFLSCMTLLSIFLGVYIG 157
Cdd:MTH00004 423 LRMILLVQTGFPRTPPTTPINENTPTIINPITRLALGSILAGLLISSTILPTkTPPMTMPTTTKLAALIVTILGILLA 500
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
 1-182 3.58e-14

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 70.49  E-value: 3.58e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976675   1 GSYIHSYGDFQDVRYMGSLVYYMPYTSICFSLSNLSLCGLPFLSGYYSKDLILELMNMNLLGLLTFFIFFFGTGLTAMYT 80
Cdd:MTH00020 344 GSVIHALSDEQDMRKMGGLISFLPLTYIFFLIGSLSLMGFPYLTGFYSKDLILELAFGQYYLIFAYWLGCFSALLTAFYS 423

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976675  81 FRLfffIQFDYVKNLSL-INVNDNCHYMNWGMFGLMIV----SVFGGSFLMWLIFP----LPSLI-----VLPMFLSCM- 145
Cdd:MTH00020 424 IRL---IYLTFLSNTNLkKAVFFHLHEGDWNLLLPLGIlalgSIFVGYLAKEMIWSfqitLPPIVplsikLLPVFLSLGg 500

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*.
gi 699976675 146 TLLSIFLGVYIGYFLF---------SFTFVYKKFMFIYSVNLFFGS 182
Cdd:MTH00020 501 IGLVIILYFYSSKTFRvpfsfigrnSYTFLGSAWQFNYILNYFLIK 546
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 1-161 1.33e-13

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 68.64  E-value: 1.33e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976675   1 GSYIHSYGDfQDVRYMGSLVYYMPYTSICFSLSNLSLCGLPFLSGYYSKDLILELMNMNLLGLLTFFIFFFG-TGLTAMY 79
Cdd:COG1009  345 GSVIHATGT-RDIRKMGGLRKKMPITAITFLIGALSLAGIPPFAGFFSKEAILEAALEAGGLGPLLLAVALLgAFLTAFY 423

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976675  80 TFRLFFFIQFDYVKNLSLINVNDNCHYMNWGMFGLMIVSVFGGSFLMWL---------IFPLPSLIVLPMFLSCMTLLSI 150
Cdd:COG1009  424 SFRLFFLVFFGKPRPKTPKHPHESPWLMTLPLVVLAVLSLVLGLLLPGLlegllapaaVLGGELHLAHGLLLNALPLLLS 503

                        170
                 ....*....|.
gi 699976675 151 FLGVYIGYFLF 161
Cdd:COG1009  504 LLGIALGYLLY 514
ND5 MTH00137
NADH dehydrogenase subunit 5; Provisional
 1-103 5.75e-13

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214428 [Multi-domain]  Cd Length: 611  Bit Score: 66.78  E-value: 5.75e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976675   1 GSYIHSYGDFQDVRYMGSLVYYMPYTSICFSLSNLSLCGLPFLSGYYSKDLILELMNMNLLGLLTFFIFFFGTGLTAMYT 80
Cdd:MTH00137 349 GSIIHSLNDEQDIRKMGGLHHLTPFTSSCLTIGSLALTGTPFLAGFFSKDAIIEALNTSHLNAWALTLTLIATSFTAVYS 428

                         90       100
                 ....*....|....*....|...
gi 699976675  81 FRLFFFIQFDYVKNLSLINVNDN 103
Cdd:MTH00137 429 LRVVFFVSMGHPRFNPLSPINEN 451
ND5 MTH00210
NADH dehydrogenase subunit 5; Provisional
 1-182 1.37e-11

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177253 [Multi-domain]  Cd Length: 616  Bit Score: 63.10  E-value: 1.37e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976675   1 GSYIHSYGDFQDVRYMGSLVYYMPYTSICFSLSNLSLCGLPFLSGYYSKDLILELMNMNLLGLLTFFIFFFGTGLTAMYT 80
Cdd:MTH00210 345 GSVIHAVSDEQDMRKMGGLIKSIPFTYVMILIGSLSLMGFPYLTGFYSKDLILELTYDKYYIAFAYWLGSFSALLTAFYS 424

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976675  81 FRLFF--FIQFDYVKNLSLINVNDNCHYMNWGMFGLMIVSVFGGS-----FLMWLIFPL-PSLI-VLPMFLSCMTLLSIF 151
Cdd:MTH00210 425 IRLIYltFITNTNSKKEVFIGVHESSWNITFPLLLLAFGSIFVGYlgkevVLSNVIPPIvPNSIkMIPLLFSLLGALLAF 504

                        170       180       190
                 ....*....|....*....|....*....|.
gi 699976675 152 LGVYIGYFLFSFTFVYKKFMFIYSVNLFFGS 182
Cdd:MTH00210 505 VIYNSMVFLIKISRRGVSIRLYHVIYTFLNS 535
PRK07376 PRK07376
NADH-quinone oxidoreductase subunit L;
1-85 4.66e-09

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236005 [Multi-domain]  Cd Length: 673  Bit Score: 55.41  E-value: 4.66e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976675   1 GSYIHSYGDF--------QDVRYMGSLVYYMPYTSICFSLSNLSLCGLPFLSGYYSKDLILelMNMNLLGLLTFFIFFFG 72
Cdd:PRK07376 361 GSVIHGMEEVvghdpvlaQDMRLMGGLRKYMPITAITFLIGCLAISGIPPFAGFWSKDEIL--GAAFEANPALWFVGFLT 438

                         90
                 ....*....|...
gi 699976675  73 TGLTAMYTFRLFF 85
Cdd:PRK07376 439 AGMTAFYMFRMYF 451
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 1-54 6.70e-07

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 49.19  E-value: 6.70e-07
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 699976675   1 GSYIHSYG-DFQDVRYMGSLVYYMPYTSICFSLSNLSLCGLPFLSGYYSKDLILE 54
Cdd:MTH00032 360 GSVIHSTTvDEQDMRKMGGLIHSIPFTYTMMLIGSFSIMGLPYLTGFYSKDLILE 414
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 1-54 2.68e-05

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 43.84  E-value: 2.68e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 699976675    1 GSYIHSYGDFQDVRYMGSLVYYMPYTSICFSLSNLSLCGLPFLSGYYSKDLILE 54
Cdd:pfam00361 220 GSVIYRRVHTRNIRDYGGLAKTMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
ndhF CHL00025
NADH dehydrogenase subunit 5
 1-53 5.00e-04

NADH dehydrogenase subunit 5


Pssm-ID: 214338 [Multi-domain]  Cd Length: 741  Bit Score: 40.65  E-value: 5.00e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 699976675   1 GSYIHSYGDF--------QDVRYMGSLVYYMPYTSICFSLSNLSLCGLPFLSGYYSKDLIL 53
Cdd:CHL00025 361 GSVIHSMEPIvgyspdksQNMVLMGGLRKYMPITKTTFLLGTLSLCGIPPLACFWSKDEIL 421
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 1-54 3.35e-03

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 37.82  E-value: 3.35e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 699976675   1 GSYIHSYGDfQDVRYMGSLVYYMPYTSICFSLSNLSLCGLPFLSGYYSKDLILE 54
Cdd:COG0651  345 GAIERATGT-RDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQ 397
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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