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Conserved domains on  [gi|699009293|gb|AIU36088|]
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NADH dehydrogenase subunit I, partial (mitochondrion) [Sphingonotus rubescens]

Protein Classification

NADH dehydrogenase subunit 1( domain architecture ID 10009622)

NADH dehydrogenase subunit 1 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND1 MTH00193
NADH dehydrogenase subunit 1; Provisional
 6-119 6.74e-49

NADH dehydrogenase subunit 1; Provisional


:

Pssm-ID: 177241  Cd Length: 306  Bit Score: 157.62  E-value: 6.74e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699009293   6 LIMFVLNFLLLVICVLISVAFLTLLERKVLGYIQIRKGPNKVGFLGIPQPFSDAIKLICKEQPIPFMSNYFLYYFSPVFN 85
Cdd:MTH00193   1 LMMMLINFLLLIICVLVSVAFLTLLERKVLGYIQIRKGPNKVGFMGILQPFSDAIKLFTKEQTYPLMSNYLLYYFSPVFS 80

                         90       100       110
                 ....*....|....*....|....*....|....
gi 699009293  86 LMISLFVWSIFPYMTYMCSFSYGFLFFLCCTSLS 119
Cdd:MTH00193  81 LFLSLLIWLIYPYLFNLISFNLGILFFLCCSSLG 114
 
Name Accession Description Interval E-value
ND1 MTH00193
NADH dehydrogenase subunit 1; Provisional
 6-119 6.74e-49

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177241  Cd Length: 306  Bit Score: 157.62  E-value: 6.74e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699009293   6 LIMFVLNFLLLVICVLISVAFLTLLERKVLGYIQIRKGPNKVGFLGIPQPFSDAIKLICKEQPIPFMSNYFLYYFSPVFN 85
Cdd:MTH00193   1 LMMMLINFLLLIICVLVSVAFLTLLERKVLGYIQIRKGPNKVGFMGILQPFSDAIKLFTKEQTYPLMSNYLLYYFSPVFS 80

                         90       100       110
                 ....*....|....*....|....*....|....
gi 699009293  86 LMISLFVWSIFPYMTYMCSFSYGFLFFLCCTSLS 119
Cdd:MTH00193  81 LFLSLLIWLIYPYLFNLISFNLGILFFLCCSSLG 114
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
 5-119 1.48e-23

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 92.12  E-value: 1.48e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699009293   5 DLIMFVLNFLLLVICVLISVAFLTLLERKVLGYIQIRKGPNKVGFLGIPQPFSDAIKLICKEQPIPFMSNYFLYYFSPVF 84
Cdd:COG1005    7 PLLITLIKALVILVFLLLLAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLFLLAPIL 86

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 699009293  85 NLMISLFVWSIFPY--MTYMCSFSYGFLFFLCCTSLS 119
Cdd:COG1005   87 AFIPALLAFAVIPFgpGLVLADLNVGLLYVLAVSSLG 123
NADHdh pfam00146
NADH dehydrogenase;
14-119 1.60e-23

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 91.77  E-value: 1.60e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699009293   14 LLLVICVLISVAFLTLLERKVLGYIQIRKGPNKVGFLGIPQPFSDAIKLICKEQPIPFMSNYFLYYFSPVFNLMISLFVW 93
Cdd:pfam00146   3 LLLLVPLLLAVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALLAF 82

                          90       100
                  ....*....|....*....|....*...
gi 699009293   94 SIFPYMTYM--CSFSYGFLFFLCCTSLS 119
Cdd:pfam00146  83 AVIPFGPGLvlADLNVGILYILALSSLG 110
 
Name Accession Description Interval E-value
ND1 MTH00193
NADH dehydrogenase subunit 1; Provisional
 6-119 6.74e-49

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177241  Cd Length: 306  Bit Score: 157.62  E-value: 6.74e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699009293   6 LIMFVLNFLLLVICVLISVAFLTLLERKVLGYIQIRKGPNKVGFLGIPQPFSDAIKLICKEQPIPFMSNYFLYYFSPVFN 85
Cdd:MTH00193   1 LMMMLINFLLLIICVLVSVAFLTLLERKVLGYIQIRKGPNKVGFMGILQPFSDAIKLFTKEQTYPLMSNYLLYYFSPVFS 80

                         90       100       110
                 ....*....|....*....|....*....|....
gi 699009293  86 LMISLFVWSIFPYMTYMCSFSYGFLFFLCCTSLS 119
Cdd:MTH00193  81 LFLSLLIWLIYPYLFNLISFNLGILFFLCCSSLG 114
ND1 MTH00225
NADH dehydrogenase subunit 1; Provisional
 7-119 4.13e-41

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214465  Cd Length: 305  Bit Score: 137.86  E-value: 4.13e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699009293   7 IMFVLNFLLLVICVLISVAFLTLLERKVLGYIQIRKGPNKVGFLGIPQPFSDAIKLICKEQPIPFMSNYFLYYFSPVFNL 86
Cdd:MTH00225   1 MSFLLKFLIMLICLLLSVAFYTLLERKVLGYIQLRKGPNKVGLMGLPQPFADALKLFTKEQTKPQLSNKLPYYIAPILSL 80

                         90       100       110
                 ....*....|....*....|....*....|...
gi 699009293  87 MISLFVWSIFPYMTYMCSFSYGFLFFLCCTSLS 119
Cdd:MTH00225  81 ILSLILWSLYPSMFSIYSFKFGILFFLCISSLN 113
ND1 MTH00143
NADH dehydrogenase subunit 1; Provisional
 7-119 5.89e-35

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177201  Cd Length: 307  Bit Score: 121.90  E-value: 5.89e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699009293   7 IMFVLNFLLLVICVLISVAFLTLLERKVLGYIQIRKGPNKVGFLGIPQPFSDAIKLICKEQPIPFMSNYFLYYFSPVFNL 86
Cdd:MTH00143   1 LVSLLSSVFTYLCVLLAVAFFTLLERKGLGYFQIRKGPNKVGLMGLPQPLADAVKLFTKEFVKPTMSNKFPFFLAPCLSL 80

                         90       100       110
                 ....*....|....*....|....*....|...
gi 699009293  87 MISLFVWSIFPYMTYMCSFSYGFLFFLCCTSLS 119
Cdd:MTH00143  81 ILALLLWQLYPSYFSSSYFGWGLLFFLCVSSLN 113
ND1 MTH00195
NADH dehydrogenase subunit 1; Provisional
 6-119 1.49e-29

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214452  Cd Length: 307  Bit Score: 107.91  E-value: 1.49e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699009293   6 LIMFVLNFLLLVICVLISVAFLTLLERKVLGYIQIRKGPNKVGFLGIPQPFSDAIKLICKEQPIPFMSNYFLYYFSPVFN 85
Cdd:MTH00195   1 WMISVIHFLIQIVPVLLAVAFFTLLERKILGYIQLRKGPNKVGPYGLLQPIADAVKLFIKEPVKPSTSSLWLFFFAPVLA 80

                         90       100       110
                 ....*....|....*....|....*....|....
gi 699009293  86 LMISLFVWSIFPYMTYMCSFSYGFLFFLCCTSLS 119
Cdd:MTH00195  81 LALALILWVPIPSPFGFSSINLSVLFFLCVSSLS 114
ND1 MTH00134
NADH dehydrogenase subunit 1; Provisional
 2-119 3.90e-28

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177192  Cd Length: 324  Bit Score: 104.30  E-value: 3.90e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699009293   2 MMYDLIMFVLNFLLLVICVLISVAFLTLLERKVLGYIQIRKGPNKVGFLGIPQPFSDAIKLICKEQPIPFMSNYFLYYFS 81
Cdd:MTH00134   1 MLSTLITHIINPLAYIVPVLLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPVRPSTSSPFLFLAT 80

                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 699009293  82 PVFNLMISLFVWSIFPYMTYMCSFSYGFLFFLCCTSLS 119
Cdd:MTH00134  81 PMLALTLALTLWAPMPMPYPVTDLNLGILFILALSSLA 118
ND1 MTH00040
NADH dehydrogenase subunit 1; Validated
 4-119 1.09e-27

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 214409  Cd Length: 323  Bit Score: 103.13  E-value: 1.09e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699009293   4 YDLIMFVLNFLLLVICVLISVAFLTLLERKVLGYIQIRKGPNKVGFLGIPQPFSDAIKLICKEQPIPFMSNYFLYYFSPV 83
Cdd:MTH00040   1 MSVILFLINLLSFIVPVLLAVAFLTLVERKVLGYMQFRKGPNVVGPYGLLQPFADGLKLFIKETLKPSNASPYLFFFSPV 80

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 699009293  84 FNLMISLFVWSIFPYMTYMCSFSYGFLFFLCCTSLS 119
Cdd:MTH00040  81 LFLFLALLLWSLIPVPTPTLNVNLSLLLVLGLSSLS 116
ND1 MTH00111
NADH dehydrogenase subunit 1; Provisional
 3-118 1.69e-27

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214422  Cd Length: 323  Bit Score: 102.67  E-value: 1.69e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699009293   3 MYDLIMFVLNFLLLVICVLISVAFLTLLERKVLGYIQIRKGPNKVGFLGIPQPFSDAIKLICKEQPIPFMSNYFLYYFSP 82
Cdd:MTH00111   1 MPTLLLNLINPLLYIIPILIAVAFLTLLERKILGYMQLRKGPNIVGPFGLLQPIADGVKLFIKEPIRPSTSSPILFTLTP 80

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 699009293  83 VFNLMISLFVWSIFPYMTYMCSFSYGFLFFLCCTSL 118
Cdd:MTH00111  81 ILALLLALTIWTPLPMPFPLADLNLGLLFLLAMSSM 116
ND1 MTH00218
NADH dehydrogenase subunit 1; Provisional
 6-119 3.92e-27

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214463  Cd Length: 311  Bit Score: 101.53  E-value: 3.92e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699009293   6 LIMFVLNFLLLVICVLISVAFLTLLERKVLGYIQIRKGPNKVGFLGIPQPFSDAIKLICKEQPIPFMSNYFLYYFSPVFN 85
Cdd:MTH00218   1 MLLSLINLLLYILPVLLAVAFLTLLERKVLGYMQLRKGPNVVGPYGLLQPIADGVKLFIKEPIRPSTSSPFLFLLAPILA 80

                         90       100       110
                 ....*....|....*....|....*....|....
gi 699009293  86 LMISLFVWSIFPYMTYMCSFSYGFLFFLCCTSLS 119
Cdd:MTH00218  81 LTLALLLWMPLPLPFSLINLNLGVLFILAISSLG 114
ND1 MTH00104
NADH dehydrogenase subunit 1; Provisional
 8-119 4.32e-27

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177166  Cd Length: 318  Bit Score: 101.62  E-value: 4.32e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699009293   8 MFVLNFLLLVICVLISVAFLTLLERKVLGYIQIRKGPNKVGFLGIPQPFSDAIKLICKEQPIPFMSNYFLYYFSPVFNLM 87
Cdd:MTH00104   1 MFMINILLLIIPILLAVAFLTLVERKVLGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPLRPLTSSTTMFIIAPILALT 80

                         90       100       110
                 ....*....|....*....|....*....|..
gi 699009293  88 ISLFVWSIFPYMTYMCSFSYGFLFFLCCTSLS 119
Cdd:MTH00104  81 LALTMWIPLPMPYPLINMNLGVLFILAMSSLA 112
ND1 MTH00216
NADH dehydrogenase subunit 1; Provisional
 2-119 1.41e-26

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 164761  Cd Length: 327  Bit Score: 100.19  E-value: 1.41e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699009293   2 MMYDLIMFVLNFLLLVICVLISVAFLTLLERKVLGYIQIRKGPNKVGFLGIPQPFSDAIKLICKEQPIPFMSNYFLYYFS 81
Cdd:MTH00216   1 MMVFIIFYLIKILIIIVPLLIAVAYLTLAERKVLGYMQARKGPNVVGVYGLLQPFADGVKLFTKEMVIPHHANLFVYIVA 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 699009293  82 PVFNLMISLFVWSIFPYM--TYMCSFSYGFLFFLCCTSLS 119
Cdd:MTH00216  81 PVLSFTLALIVWGVIPYErgVLISDFKIGILYILAISSIS 120
ND1 MTH00010
NADH dehydrogenase subunit 1; Validated
 7-118 1.70e-26

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 164586  Cd Length: 311  Bit Score: 99.85  E-value: 1.70e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699009293   7 IMFVLNFLLLVICVLISVAFLTLLERKVLGYIQIRKGPNKVGFLGIPQPFSDAIKLICKEQPIPFMSNYFLYYFSPVFNL 86
Cdd:MTH00010   3 ISFFISILLSYVMALLAMAFYTLLERKALGYFQLRKGPNKVGLAGIPQPFADAIKLFTKEQTKPSPANITPFLGAPMMSL 82

                         90       100       110
                 ....*....|....*....|....*....|..
gi 699009293  87 MISLFVWSIFPYMTYMCSFSYGFLFFLCCTSL 118
Cdd:MTH00010  83 ILALLLWSLYPHKHPSFFLKFSILLFLCVSSM 114
ND1 MTH00071
NADH dehydrogenase subunit 1; Provisional
 3-118 2.02e-26

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214418  Cd Length: 322  Bit Score: 99.69  E-value: 2.02e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699009293   3 MYDLIMFVLNFLLLVICVLISVAFLTLLERKVLGYIQIRKGPNKVGFLGIPQPFSDAIKLICKEQPIPFMSNYFLYYFSP 82
Cdd:MTH00071   1 MMTLISLIINPLLYIIPVLLAVAFLTLVERKVLGYMQLRKGPNIVGPMGLLQPIADGLKLFIKEPIRPSTSSQILFILMP 80

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 699009293  83 VFNLMISLFVWSIFPYMTYMCSFSYGFLFFLCCTSL 118
Cdd:MTH00071  81 TMALTLALIIWTPLPMPNNLSNLNLGILFILALSSL 116
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
 5-119 1.48e-23

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 92.12  E-value: 1.48e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699009293   5 DLIMFVLNFLLLVICVLISVAFLTLLERKVLGYIQIRKGPNKVGFLGIPQPFSDAIKLICKEQPIPFMSNYFLYYFSPVF 84
Cdd:COG1005    7 PLLITLIKALVILVFLLLLAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLFLLAPIL 86

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 699009293  85 NLMISLFVWSIFPY--MTYMCSFSYGFLFFLCCTSLS 119
Cdd:COG1005   87 AFIPALLAFAVIPFgpGLVLADLNVGLLYVLAVSSLG 123
NADHdh pfam00146
NADH dehydrogenase;
14-119 1.60e-23

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 91.77  E-value: 1.60e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699009293   14 LLLVICVLISVAFLTLLERKVLGYIQIRKGPNKVGFLGIPQPFSDAIKLICKEQPIPFMSNYFLYYFSPVFNLMISLFVW 93
Cdd:pfam00146   3 LLLLVPLLLAVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALLAF 82

                          90       100
                  ....*....|....*....|....*...
gi 699009293   94 SIFPYMTYM--CSFSYGFLFFLCCTSLS 119
Cdd:pfam00146  83 AVIPFGPGLvlADLNVGILYILALSSLG 110
ND1 MTH00054
NADH dehydrogenase subunit 1; Provisional
 6-98 7.35e-23

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177127  Cd Length: 324  Bit Score: 90.56  E-value: 7.35e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699009293   6 LIMFVLNFLLLVICVLISVAFLTLLERKVLGYIQIRKGPNKVGFLGIPQPFSDAIKLICKEQPIPFMSNYFLYYFSPVFN 85
Cdd:MTH00054   1 MGIIIIKILAILVPLLISIAYLTLAERKVLGYIQCRKGPNVVGVYGLLQPLADGLKLFTKEIIIPNHANIFIYIMAPILS 80

                         90
                 ....*....|...
gi 699009293  86 LMISLFVWSIFPY 98
Cdd:MTH00054  81 LTLAFIAWGVIPY 93
PRK06076 PRK06076
NADH-quinone oxidoreductase subunit NuoH;
6-119 5.46e-20

NADH-quinone oxidoreductase subunit NuoH;


Pssm-ID: 235692  Cd Length: 322  Bit Score: 82.55  E-value: 5.46e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699009293   6 LIMFVLNFLLLVICVLISVAFLTLLERKVLGYIQIRKGPNKVGFLGIPQPFSDAIKLICKEQPIPFMSNYFLYYFSPVFN 85
Cdd:PRK06076   9 LLLILLKAVVILVVVLLCVAFLIWFERKVLARMQLRYGPNRVGPFGLLQLVADGIKLLFKEDIIPAGADKVLFLLAPVIA 88

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 699009293  86 LMISLFVWSIFPYMTY--MCSFSYGFLFFLCCTSLS 119
Cdd:PRK06076  89 FIPAFLAWAVIPFGPElvIADLNVGILYILAISSLG 124
ND1 MTH00029
NADH dehydrogenase subunit 1; Provisional
 1-119 1.12e-19

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177108  Cd Length: 343  Bit Score: 81.99  E-value: 1.12e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699009293   1 MMMYDLIMFVLNFLLLVICVLISVAFLTLLERKVLGYIQIRKGPNKVGFLGIPQPFSDAIKLICKEQPIPFMSNYFLYYF 80
Cdd:MTH00029   1 MTIYSYITVTIKLLIIFVPLLLSVAYLTLAERKVLGLMQNRKGPAIVGPWGLVQPIADGVKLLTKELIIPSQANKFLYYI 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 699009293  81 SPVFNLMISLFVWSI--FPYMTYMCSFSYGFLFFLCCTSLS 119
Cdd:MTH00029  81 APIISFTLAILAWAIvtMDQGVFLSDLDVGVLYFLAISSLS 121
ND1 MTH00090
NADH dehydrogenase subunit 1; Provisional
 12-114 1.57e-18

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177153  Cd Length: 284  Bit Score: 78.02  E-value: 1.57e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699009293  12 NFLLLVICVLISVAFLTLLERKVLGYIQIRKGPNKVGFLGIPQPFSDAIKLICKEQPIPFMSNYFLYYFSPVFNLMISLF 91
Cdd:MTH00090   1 MLLLMMIFILQAIAFITLYERHLLGSSQNRLGPNKVSFMGVLQALLDGVKLLKKEQMLPLNSSDLSFLLVPGVSFVVMYL 80

                         90       100
                 ....*....|....*....|...
gi 699009293  92 VWSIFPYMTYMCSFSYGFLFFLC 114
Cdd:MTH00090  81 EWFVLPYFFDFLSFEYSLLFFLC 103
ND1 MTH00058
NADH dehydrogenase subunit 1; Provisional
 7-119 2.71e-12

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177130  Cd Length: 293  Bit Score: 61.48  E-value: 2.71e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699009293   7 IMFVLNFLLLVICVLIsVAFLTLLERKVLGYIQIRKGPNKVGFLGIPQPFSDAIKLICKEQPIPFMSNYFLYYFSPVFNL 86
Cdd:MTH00058   2 FGLVSGLEGLLIILLL-VAFFILGERKILGYIQLRKGPNKVGIVGLLQSFADLLKLVVKFKVYGFQSRSWFSLFGVFLLV 80

                         90       100       110
                 ....*....|....*....|....*....|...
gi 699009293  87 MISLFVWSIFPYMTYMCSFSYGFLFFLCCTSLS 119
Cdd:MTH00058  81 LLVVFYCFIYGSYYSGSYSSLSLLWFLVVTSFS 113
ndhA CHL00032
NADH dehydrogenase subunit 1
 4-98 4.31e-08

NADH dehydrogenase subunit 1


Pssm-ID: 214341  Cd Length: 363  Bit Score: 49.56  E-value: 4.31e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699009293   4 YDLIMFVLNFLLLVICVLISVAFLTLLERKVLGYIQIRKGPNKVGFLGIPQPFSDAIKLICKEQPIPFMSNYFLYYFSPV 83
Cdd:CHL00032  24 YGLIWILVPILTLVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKEDLLPSRGDIRLFSIGPS 103

                         90
                 ....*....|....*
gi 699009293  84 FNLMISLFVWSIFPY 98
Cdd:CHL00032 104 IAVISILLSYLVIPF 118
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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