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Conserved domains on  [gi|697148403|ref|XP_009628383|]
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protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X2 [Nicotiana tomentosiformis]

Protein Classification

homeobox domain-containing protein( domain architecture ID 11267636)

homeobox domain-containing protein may be involved in the transcriptional regulation of key eukaryotic developmental processes

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
SAWADEE pfam16719
SAWADEE domain; The SAWADEE domain, found in plant homeobox proteins, has a pair of tandem ...
162-288 1.91e-65

SAWADEE domain; The SAWADEE domain, found in plant homeobox proteins, has a pair of tandem tudor-like folds that bind chromatin.


:

Pssm-ID: 465246  Cd Length: 126  Bit Score: 209.06  E-value: 1.91e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697148403  162 MEFEAKSARDGAWYDVASFLSHRSVetadpevLVRFAGFGAEEDEWVNVRKHVRQRSLPCESSECVAVLPGDLILCFQEG 241
Cdd:pfam16719   3 LELEARSSKDGAWYDVRVFLQHRAL-------RVRFEGFGEEEDEWVNVRKRFRERSIPLEDSECRKVRVGDLVCCFQEG 75
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 697148403  242 KEQALYFDAHVLDAQRRRHD-VRGCRCRFLVRYDHD---QSEEIVPLRKVC 288
Cdd:pfam16719  76 GDDALYYDAVVVEIQRKRHDiVEGCRCTFVVRWDHGpraGTEEEVGLERIC 126
PHA03247 super family cl33720
large tegument protein UL36; Provisional
324-532 8.43e-07

large tegument protein UL36; Provisional


The actual alignment was detected with superfamily member PHA03247:

Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 52.25  E-value: 8.43e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697148403  324 PPAETTQKAQTESRIKPAEPTQKQPAPEDTTKPVPNFAPMQLQKSSTDSLTGNTLAETTPQCMEEMTEKP------VAGT 397
Cdd:PHA03247 2780 PRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSlplggsVAPG 2859
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697148403  398 TEVPDEAPEKSPVEAPAETA---GKSPAETTLEPPAASTSKPDEAPEEPPTETTLKPPAASTTKPDEAAEQPPAEATLKP 474
Cdd:PHA03247 2860 GDVRRRPPSRSPAAKPAAPArppVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRP 2939
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 697148403  475 PAPSTSNPDEAPEEPPAETTLEPPADSTskpaEEPEEPPAETSLKPPADSISKPAEAP 532
Cdd:PHA03247 2940 QPPLAPTTDPAGAGEPSGAVPQPWLGAL----VPGRVAVPRFRVPQPAPSREAPASST 2993
HOX smart00389
Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key ...
13-75 2.41e-03

Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key developmental processes


:

Pssm-ID: 197696 [Multi-domain]  Cd Length: 57  Bit Score: 36.46  E-value: 2.41e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 697148403    13 RFNATEVAEMEAILQAHNatMPAREVLVALAEKfsssaersgkIMVQMKQVWNWFQNRRYAIR 75
Cdd:smart00389   7 SFTPEQLEELEKEFQKNP--YPSREEREELAKK----------LGLSERQVKVWFQNRRAKWK 57
 
Name Accession Description Interval E-value
SAWADEE pfam16719
SAWADEE domain; The SAWADEE domain, found in plant homeobox proteins, has a pair of tandem ...
162-288 1.91e-65

SAWADEE domain; The SAWADEE domain, found in plant homeobox proteins, has a pair of tandem tudor-like folds that bind chromatin.


Pssm-ID: 465246  Cd Length: 126  Bit Score: 209.06  E-value: 1.91e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697148403  162 MEFEAKSARDGAWYDVASFLSHRSVetadpevLVRFAGFGAEEDEWVNVRKHVRQRSLPCESSECVAVLPGDLILCFQEG 241
Cdd:pfam16719   3 LELEARSSKDGAWYDVRVFLQHRAL-------RVRFEGFGEEEDEWVNVRKRFRERSIPLEDSECRKVRVGDLVCCFQEG 75
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 697148403  242 KEQALYFDAHVLDAQRRRHD-VRGCRCRFLVRYDHD---QSEEIVPLRKVC 288
Cdd:pfam16719  76 GDDALYYDAVVVEIQRKRHDiVEGCRCTFVVRWDHGpraGTEEEVGLERIC 126
PHA03247 PHA03247
large tegument protein UL36; Provisional
324-532 8.43e-07

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 52.25  E-value: 8.43e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697148403  324 PPAETTQKAQTESRIKPAEPTQKQPAPEDTTKPVPNFAPMQLQKSSTDSLTGNTLAETTPQCMEEMTEKP------VAGT 397
Cdd:PHA03247 2780 PRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSlplggsVAPG 2859
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697148403  398 TEVPDEAPEKSPVEAPAETA---GKSPAETTLEPPAASTSKPDEAPEEPPTETTLKPPAASTTKPDEAAEQPPAEATLKP 474
Cdd:PHA03247 2860 GDVRRRPPSRSPAAKPAAPArppVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRP 2939
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 697148403  475 PAPSTSNPDEAPEEPPAETTLEPPADSTskpaEEPEEPPAETSLKPPADSISKPAEAP 532
Cdd:PHA03247 2940 QPPLAPTTDPAGAGEPSGAVPQPWLGAL----VPGRVAVPRFRVPQPAPSREAPASST 2993
COG5373 COG5373
Uncharacterized membrane protein [Function unknown];
423-491 3.74e-04

Uncharacterized membrane protein [Function unknown];


Pssm-ID: 444140 [Multi-domain]  Cd Length: 854  Bit Score: 43.45  E-value: 3.74e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 697148403 423 ETTLEPPAASTSKPDEAPEEPPTETTLKPPAASTTKPDEAAEQPPAEATLKPPAPSTSNPDEAPEEPPA 491
Cdd:COG5373   34 EAELAEAAEAASAPAEPEPEAAAAATAAAPEAAPAPVPEAPAAPPAAAEAPAPAAAAPPAEAEPAAAPA 102
DUF4045 pfam13254
Domain of unknown function (DUF4045); This presumed domain is functionally uncharacterized. ...
305-487 8.67e-04

Domain of unknown function (DUF4045); This presumed domain is functionally uncharacterized. This domain family is found in bacteria and eukaryotes, and is typically between 384 and 430 amino acids in length.


Pssm-ID: 433066 [Multi-domain]  Cd Length: 415  Bit Score: 42.08  E-value: 8.67e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697148403  305 LKQQKIGNDITRGNTTKVYPPAETTQKAQTESRIKPAEpTQKQPAPEDTTKPVPNFAPMQLQKSSTDSLTGNTLAETTPq 384
Cdd:pfam13254 185 IRQSRASVDLGRPNSFKEVTPVGLMRSPAPGGHSKSPS-VSGISADSSPTKEEPSEEADTLSTDKEQSPAPTSASEPPP- 262
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697148403  385 cmEEMTEKPVAGTTEVPDEAPEKSPVEAPAETAGKSPAETTLEPPAAStskpdeapEEPPTETTLKPPAASTTKPD--EA 462
Cdd:pfam13254 263 --KTKELPKDSEEPAAPSKSAEASTEKKEPDTESSPETSSEKSAPSLL--------SPVSKASIDKPLSSPDRDPLspKP 332
                         170       180
                  ....*....|....*....|....*....
gi 697148403  463 AEQPPAE---ATLKP-PAPSTSNPDEAPE 487
Cdd:pfam13254 333 KPQSPPKdfrANLRSrEVPKDKSKKDEPE 361
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
389-463 1.13e-03

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 41.42  E-value: 1.13e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 697148403  389 MTEKPVAGTTEVPDEAPEKSPVEAPAETAGKSPAETTLEPPaASTSKPDEAPEEPPTETTLKPPAASTTKPDEAA 463
Cdd:TIGR00601  73 MVSKPKTGTGKVAPPAATPTSAPTPTPSPPASPASGMSAAP-ASAVEEKSPSEESATATAPESPSTSVPSSGSDA 146
HOX smart00389
Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key ...
13-75 2.41e-03

Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key developmental processes


Pssm-ID: 197696 [Multi-domain]  Cd Length: 57  Bit Score: 36.46  E-value: 2.41e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 697148403    13 RFNATEVAEMEAILQAHNatMPAREVLVALAEKfsssaersgkIMVQMKQVWNWFQNRRYAIR 75
Cdd:smart00389   7 SFTPEQLEELEKEFQKNP--YPSREEREELAKK----------LGLSERQVKVWFQNRRAKWK 57
homeodomain cd00086
Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic ...
13-75 5.60e-03

Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.


Pssm-ID: 238039 [Multi-domain]  Cd Length: 59  Bit Score: 35.30  E-value: 5.60e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 697148403  13 RFNATEVAEMEAILQAHNatMPAREVLVALAEKfsssaersgkIMVQMKQVWNWFQNRRYAIR 75
Cdd:cd00086    6 RFTPEQLEELEKEFEKNP--YPSREEREELAKE----------LGLTERQVKIWFQNRRAKLK 56
 
Name Accession Description Interval E-value
SAWADEE pfam16719
SAWADEE domain; The SAWADEE domain, found in plant homeobox proteins, has a pair of tandem ...
162-288 1.91e-65

SAWADEE domain; The SAWADEE domain, found in plant homeobox proteins, has a pair of tandem tudor-like folds that bind chromatin.


Pssm-ID: 465246  Cd Length: 126  Bit Score: 209.06  E-value: 1.91e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697148403  162 MEFEAKSARDGAWYDVASFLSHRSVetadpevLVRFAGFGAEEDEWVNVRKHVRQRSLPCESSECVAVLPGDLILCFQEG 241
Cdd:pfam16719   3 LELEARSSKDGAWYDVRVFLQHRAL-------RVRFEGFGEEEDEWVNVRKRFRERSIPLEDSECRKVRVGDLVCCFQEG 75
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 697148403  242 KEQALYFDAHVLDAQRRRHD-VRGCRCRFLVRYDHD---QSEEIVPLRKVC 288
Cdd:pfam16719  76 GDDALYYDAVVVEIQRKRHDiVEGCRCTFVVRWDHGpraGTEEEVGLERIC 126
PHA03247 PHA03247
large tegument protein UL36; Provisional
324-532 8.43e-07

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 52.25  E-value: 8.43e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697148403  324 PPAETTQKAQTESRIKPAEPTQKQPAPEDTTKPVPNFAPMQLQKSSTDSLTGNTLAETTPQCMEEMTEKP------VAGT 397
Cdd:PHA03247 2780 PRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSlplggsVAPG 2859
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697148403  398 TEVPDEAPEKSPVEAPAETA---GKSPAETTLEPPAASTSKPDEAPEEPPTETTLKPPAASTTKPDEAAEQPPAEATLKP 474
Cdd:PHA03247 2860 GDVRRRPPSRSPAAKPAAPArppVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRP 2939
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 697148403  475 PAPSTSNPDEAPEEPPAETTLEPPADSTskpaEEPEEPPAETSLKPPADSISKPAEAP 532
Cdd:PHA03247 2940 QPPLAPTTDPAGAGEPSGAVPQPWLGAL----VPGRVAVPRFRVPQPAPSREAPASST 2993
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
387-486 9.93e-07

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 51.81  E-value: 9.93e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697148403  387 EEMTEKPVAGTTEVP--------DEAPEKSPVEAPAETAGKSPAETTLEPPAASTSKPDEAPEEPPTETTLKPPAASTTK 458
Cdd:PRK12270   12 EEMYQQYLADPNSVDpswreffaDYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAA 91
                          90       100
                  ....*....|....*....|....*...
gi 697148403  459 PDEAAEQPPAEATLKPPAPSTSNPDEAP 486
Cdd:PRK12270   92 AAAAPAAPPAAAAAAAPAAAAVEDEVTP 119
PHA03247 PHA03247
large tegument protein UL36; Provisional
324-536 1.64e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 51.48  E-value: 1.64e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697148403  324 PPAETTQKAQTESRIKPAEPTqKQPAPEDTTKPVPNFAPmqlqkssTDSLTGNTLAETTPQCMEEMTEKPVAGTTEVPDE 403
Cdd:PHA03247 2735 LPAAPAPPAVPAGPATPGGPA-RPARPPTTAGPPAPAPP-------AAPAAGPPRRLTRPAVASLSESRESLPSPWDPAD 2806
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697148403  404 APEKSPVEAPAETAGKSPAETTLEPPAASTSKPDEAPEEPPTETTL------------KPPAASTTKPDEAAEQPPAEAT 471
Cdd:PHA03247 2807 PPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLggsvapggdvrrRPPSRSPAAKPAAPARPPVRRL 2886
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 697148403  472 LKPPAP----STSNPDEAPEEPPAETTLEPPADSTSKPAEEPEEPPAETSLKPPADSISKPAEAPAEQP 536
Cdd:PHA03247 2887 ARPAVSrsteSFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEP 2955
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
324-501 1.75e-06

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 51.14  E-value: 1.75e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697148403 324 PPAETTQKAQTESRIKPAEPTQKQPAPEDTTKPVPNFAPMQLQKSSTDSLTGNTLAETTPQCMEEMtekPVAGTTEVPDE 403
Cdd:PRK07764 624 PAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAA---PAAPAGAAPAQ 700
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697148403 404 APEKSPVEAPAETAGKSPAETTLEPPAASTSKPDEAPEEPPTETTLKPPAASTTKPDEAAEQPPAEATLKPPAPSTSNPD 483
Cdd:PRK07764 701 PAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPS 780
                        170       180
                 ....*....|....*....|....
gi 697148403 484 EAPE------EPPAETTLEPPADS 501
Cdd:PRK07764 781 EEEEmaeddaPSMDDEDRRDAEEV 804
PHA03247 PHA03247
large tegument protein UL36; Provisional
324-550 2.88e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 50.71  E-value: 2.88e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697148403  324 PPAETTQKAQTESRIKPAEPTQKQPAPEDTTKPVPnfaPMQLQKSSTDSLTGNTLAETTPQcmEEMTEKPVAGTTEVPDE 403
Cdd:PHA03247 2592 PPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDP---PPPSPSPAANEPDPHPPPTVPPP--ERPRDDPAPGRVSRPRR 2666
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697148403  404 APEKSPVEAPAETAgKSPAETTLEPPAASTSK------PDEAPEEPPTETTLKPPAASTTKPDEAAEQPPAEATLKPPAP 477
Cdd:PHA03247 2667 ARRLGRAAQASSPP-QRPRRRAARPTVGSLTSladpppPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVP 2745
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 697148403  478 STSNPDEAPEEPPAETTLEPPADSTSKPAEEPEEPPAETslkPPADSISKPAEAPAEQPKEEEHVYAGATAAS 550
Cdd:PHA03247 2746 AGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLT---RPAVASLSESRESLPSPWDPADPPAAVLAPA 2815
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
393-502 7.41e-06

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 48.83  E-value: 7.41e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697148403 393 PVAGTTEVPDEAPEKSPVEAPAETAGKSPAETTLEPPAASTSKPDEAPEEPPTETTLKPPAASTTKPDEAAEQPPAEATL 472
Cdd:PRK07764 392 GAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPA 471
                         90       100       110
                 ....*....|....*....|....*....|
gi 697148403 473 KPPAPSTSNPDEAPEEPPAETTLEPPADST 502
Cdd:PRK07764 472 AAPEPTAAPAPAPPAAPAPAAAPAAPAAPA 501
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
393-500 8.87e-06

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 48.83  E-value: 8.87e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697148403 393 PVAGTTEVPDEAPEKSPVEAPAETAGKSPAETTLEPPAASTSKPDEAPEEPPTETTLKPPAASTTKPDEAAEQPPAEATL 472
Cdd:PRK07764 400 SAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAA 479
                         90       100
                 ....*....|....*....|....*...
gi 697148403 473 KPPAPSTSNPDEAPEEPPAETTLEPPAD 500
Cdd:PRK07764 480 PAPAPPAAPAPAAAPAAPAAPAAPAGAD 507
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
393-552 1.11e-05

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 48.31  E-value: 1.11e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697148403 393 PVAGTTEVPDEAPEKSPVeAPAETAGKSPAETTLEPPAASTSKPDEAPEEPPTETTLKPPAASTTKPDEAAEQPPAEATL 472
Cdd:PRK07003 398 AVTAVTGAAGAALAPKAA-AAAAATRAEAPPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGS 476
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697148403 473 KPPAPSTSNPDEAPEepPAETTLEPPADSTSKPAEEPEEPPAETSLKPPADSISKPAEAPAEQPKEEEHVYAGATAASMD 552
Cdd:PRK07003 477 ASAPASDAPPDAAFE--PAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPPAPEARPPTPAAAAPAARAGGAAAALD 554
rne PRK10811
ribonuclease E; Reviewed
378-549 1.12e-05

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 48.50  E-value: 1.12e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697148403  378 LAETTPQCMEEMTEKPVAGTTEVPDEAPEKSPVEAPAETAGKSPAETTLEPPA--ASTSKPDEAPEEPPTETTLKPPAAS 455
Cdd:PRK10811  847 VVRPQDVQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVVEAVAEVVEEPVvvAEPQPEEVVVVETTHPEVIAAPVTE 926
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697148403  456 TTKPDEAAEQPPAEATLKPPAPSTSNPDEAPEEPPAETTLEPPADST---SKPAEEPEEPPAETSLKPPADSISKPAEAP 532
Cdd:PRK10811  927 QPQVITESDVAVAQEVAEHAEPVVEPQDETADIEEAAETAEVVVAEPevvAQPAAPVVAEVAAEVETVTAVEPEVAPAQV 1006
                         170
                  ....*....|....*..
gi 697148403  533 AEQPKEEEHVYAGATAA 549
Cdd:PRK10811 1007 PEATVEHNHATAPMTRA 1023
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
340-504 1.91e-05

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 47.54  E-value: 1.91e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697148403 340 PAEPTQKQPAPEDTTKPVPNFAPMQLQKSSTDSLTGNTLAETTPQCMEEMTEKPVAGTTEVPDEAPEKSPVEAPAETAGK 419
Cdd:PRK07003 373 PARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADRGDDAADGDAPVPAK 452
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697148403 420 SPAettlepPAASTSKPDEAPEEPPTETTLKPPAASTTKPDEAAEQPPAEATLKPPAPSTSNPDEAPEEPPAETTLEPPA 499
Cdd:PRK07003 453 ANA------RASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAA 526

                 ....*
gi 697148403 500 DSTSK 504
Cdd:PRK07003 527 PPAPE 531
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
319-523 2.55e-05

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 47.18  E-value: 2.55e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697148403 319 TTKVYPPAETTQKAQTESRIKPAEPTQkqPAPEDTTKPVPNFAPMQLQKSSTDSLTGNTLAETTPQCMEEMTEKPVAGTT 398
Cdd:PRK12323 376 TAAAAPVAQPAPAAAAPAAAAPAPAAP--PAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPA 453
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697148403 399 EVPDEAPEKSPveAPAETAGKSPAETTLEPPAASTSKPDEAPEEPPTETTLkPPAASTTKPDEAAEQPPAEATLKPPAPS 478
Cdd:PRK12323 454 PAAAPAAAARP--AAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEEL-PPEFASPAPAQPDAAPAGWVAESIPDPA 530
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*...
gi 697148403 479 TSNPD---EAPEEPPAETTLEPPADSTSKPAEEPEEPPAETSLKPPAD 523
Cdd:PRK12323 531 TADPDdafETLAPAPAAAPAPRAAAATEPVVAPRPPRASASGLPDMFD 578
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
392-545 3.27e-05

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 46.63  E-value: 3.27e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697148403 392 KPVAGTTEVPdEAPEKSPVEAPAETAGKSPAETTLEPPAASTSKPDEAPEEPPTETTLKPPAASTTkpdeAAEQPPAEAt 471
Cdd:PRK14951 365 KPAAAAEAAA-PAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAP----AAAAPAAAP- 438
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 697148403 472 lkPPAPSTSNPDEAPEEPPAETTLEPPADSTSKPAEEPeeppaetslkPPADSISKPAEAPAEqPKEEEHVYAG 545
Cdd:PRK14951 439 --AAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVAS----------AAPAPAAAPAAARLT-PTEEGDVWHA 499
PHA03247 PHA03247
large tegument protein UL36; Provisional
324-537 3.98e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 46.86  E-value: 3.98e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697148403  324 PPAETTQKAQTESRIKPAEPTQKQPAPEDTTKPVPNFAPMQLQKSSTDSLTGNTLAETTPQCMEEmTEKPVAGTTEVPDe 403
Cdd:PHA03247 2626 PPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARP-TVGSLTSLADPPP- 2703
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697148403  404 aPEKSPVEAPAETAGKSPAETTLEPPAASTSKPDEAPEEPPTETTLKPPAASTTKPDEAAEQPPAEAT-----LKPPAPS 478
Cdd:PHA03247 2704 -PPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAppaapAAGPPRR 2782
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 697148403  479 TSNPDEAPEEPPAETTLEPPADSTSKPAEEPEEPPAETSLKPPADSISKPAEAPAEQPK 537
Cdd:PHA03247 2783 LTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPP 2841
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
429-536 4.84e-05

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 46.42  E-value: 4.84e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697148403  429 PAASTSKPDEAPEEPPTETTLKPPAASTTKPDEAAEQPPAEATLKPPAP-STSNPDEAPEEPPAETTLEPPADSTSkpae 507
Cdd:PRK12270   38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPaAAAAAAAAPAAPPAAAAAAAPAAAAV---- 113
                          90       100
                  ....*....|....*....|....*....
gi 697148403  508 epeePPAETSLKPPADSISKPAEAPAEQP 536
Cdd:PRK12270  114 ----EDEVTPLRGAAAAVAKNMDASLEVP 138
PLN03237 PLN03237
DNA topoisomerase 2; Provisional
331-550 7.49e-05

DNA topoisomerase 2; Provisional


Pssm-ID: 215641 [Multi-domain]  Cd Length: 1465  Bit Score: 46.01  E-value: 7.49e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697148403  331 KAQTESRIKPAEPTQKQPAPEDTTKPVPNFAPMQLQKSSTDSLTGNTLAETTPQCMEEMTEKPVAGTTEVPDE------- 403
Cdd:PLN03237 1188 RGESGAAKKVSRQAPKKPAPKKTTKKASESETTEETYGSSAMETENVAEVVKPKGRAGAKKKAPAAAKEKEEEdeildlk 1267
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697148403  404 ----------APEKSP--------VEAPAETAGKSPAETTLEPPAASTSKPDEAPEEPPTETTLK----PPAASTTKpde 461
Cdd:PLN03237 1268 drlaaynldsAPAQSAkmeetvkaVPARRAAARKKPLASVSVISDSDDDDDDFAVEVSLAERLKKkggrKPAAANKK--- 1344
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697148403  462 aAEQPPAEATLKPPAPSTSNPDEAPEE-PPAETTLEPPADSTSKPAEEPEEPPAETSLKPPADSISKPAEAPAEQPKEEE 540
Cdd:PLN03237 1345 -AAKPPAAAKKRGPATVQSGQKLLTEMlKPAEAIGISPEKKVRKMRASPFNKKSGSVLGRAATNKETESSENVSGSSSSE 1423
                         250
                  ....*....|
gi 697148403  541 HVYAGATAAS 550
Cdd:PLN03237 1424 KDEIDVSAKP 1433
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
340-532 7.55e-05

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 45.64  E-value: 7.55e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697148403 340 PAEPTQKQPAPEDTTKPVPNFAPMQLQKSSTDSLTGNTLAETTPQCMEEMTEKPVAGTTEVPDEAPEKSPVEAPAETAGK 419
Cdd:PRK12323 377 AAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPAPAA 456
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697148403 420 SPAETTLEPPAASTSKPDEAPEEPPTETTLKPPAASTTKPDEAAEQPPAeatlkPPAPSTSNPDEAPEEPPAETTLEpPA 499
Cdd:PRK12323 457 APAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPE-----FASPAPAQPDAAPAGWVAESIPD-PA 530
                        170       180       190
                 ....*....|....*....|....*....|...
gi 697148403 500 DSTSKPAEEPEEPPAETSLKPPADSISKPAEAP 532
Cdd:PRK12323 531 TADPDDAFETLAPAPAAAPAPRAAAATEPVVAP 563
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
379-497 7.75e-05

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 45.48  E-value: 7.75e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697148403 379 AETTPQCMEEMTEKPVAGTTEVPDEAPEKSPVEAPAETAGKSPAETTLEPPAASTSKPDEAPEEPPTETTLKPPAASTTK 458
Cdd:PRK14951 369 AAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALA 448
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 697148403 459 PDEAAEQPPAEATLKP---PAPSTSNPDEAPEEPPAETTLEP 497
Cdd:PRK14951 449 PAPPAQAAPETVAIPVrvaPEPAVASAAPAPAAAPAAARLTP 490
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
352-539 8.97e-05

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 45.25  E-value: 8.97e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697148403 352 DTTKPVPNFAPMQLQKSSTDSLTGNTLAETTPQCMEEMTEKPVAGTTEVPDEAPEKSPV---EAPAETAGKSPAETTLEP 428
Cdd:PRK12323 371 GAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPApeaLAAARQASARGPGGAPAP 450
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697148403 429 PAASTSKPdeAPEEPPtettlkPPAASTTKPDEAAEQPPAEATLKPPAPStsnPDEAP--EEPPAETTLEPPADSTSKPA 506
Cdd:PRK12323 451 APAPAAAP--AAAARP------AAAGPRPVAAAAAAAPARAAPAAAPAPA---DDDPPpwEELPPEFASPAPAQPDAAPA 519
                        170       180       190
                 ....*....|....*....|....*....|...
gi 697148403 507 EEPEEPPAETSLKPPADSISKPAEAPAEQPKEE 539
Cdd:PRK12323 520 GWVAESIPDPATADPDDAFETLAPAPAAAPAPR 552
PHA03247 PHA03247
large tegument protein UL36; Provisional
340-536 1.11e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 45.31  E-value: 1.11e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697148403  340 PAEPTQKQPAPEDTTKPVPNFAPMQLQKSSTDSLTGNTLAETTPqcmeemtEKPVAGTTEVPDEAPEkSPVEAPAETAGK 419
Cdd:PHA03247 2702 PPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVP-------AGPATPGGPARPARPP-TTAGPPAPAPPA 2773
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697148403  420 SPAEttlePPAASTSKPDEAPEEPPTETTLKPPAASttkpDEAAEQPPAEATLK-----------PPAPSTSNPDEAPEE 488
Cdd:PHA03247 2774 APAA----GPPRRLTRPAVASLSESRESLPSPWDPA----DPPAAVLAPAAALPpaaspagplppPTSAQPTAPPPPPGP 2845
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|..
gi 697148403  489 PPAETTLE----PPADSTSKPAEEPEEPPAETSLKPPADSISKPAEAPAEQP 536
Cdd:PHA03247 2846 PPPSLPLGgsvaPGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTES 2897
PRK13108 PRK13108
prolipoprotein diacylglyceryl transferase; Reviewed
316-485 1.15e-04

prolipoprotein diacylglyceryl transferase; Reviewed


Pssm-ID: 237284 [Multi-domain]  Cd Length: 460  Bit Score: 44.97  E-value: 1.15e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697148403 316 RGNTTKVYPPAEttqKAQTESRIKPAEPTQKQPAPEDTTKPVPNFAPMQLQKSSTDSLTGNTLAETTPQCMEEMTEkpva 395
Cdd:PRK13108 286 RGSEYVVDEALE---REPAELAAAAVASAASAVGPVGPGEPNQPDDVAEAVKAEVAEVTDEVAAESVVQVADRDGE---- 358
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697148403 396 gTTEVPDEAPEKSPV-EAPAETAGKSPAETTLEPPAAStSKPDEAPEEPPTETTLKPPAASTTKPDEAAEQPPAEATLKP 474
Cdd:PRK13108 359 -STPAVEETSEADIErEQPGDLAGQAPAAHQVDAEAAS-AAPEEPAALASEAHDETEPEVPEKAAPIPDPAKPDELAVAG 436
                        170
                 ....*....|.
gi 697148403 475 PAPSTSNPDEA 485
Cdd:PRK13108 437 PGDDPAEPDGI 447
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
393-540 1.18e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 45.23  E-value: 1.18e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697148403 393 PVAGTTEVPDEAPEKSPVEAPAETAGKSPAETTLEP-PAASTSKPDEAPEEPPTETTlkPPAASTTKPDEAAEQPPAEAT 471
Cdd:PRK07003 375 RVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALaPKAAAAAAATRAEAPPAAPA--PPATADRGDDAADGDAPVPAK 452
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 697148403 472 LKPPAPSTSNPDEAPEEPPAETTLEPPADSTSKPAEEPEEPPAETSLKPPADSISKPAEAPAEQPKEEE 540
Cdd:PRK07003 453 ANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDA 521
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
341-556 1.33e-04

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 45.16  E-value: 1.33e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697148403  341 AEPTQKQPAPEDTTKPVPNFAPMQLQKSSTDSLTGNTLAETTPQCmeemtekpvagTTEVPDEAPEKSPVEAPAETAGKS 420
Cdd:PHA03307   18 GEFFPRPPATPGDAADDLLSGSQGQLVSDSAELAAVTVVAGAAAC-----------DRFEPPTGPPPGPGTEAPANESRS 86
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697148403  421 PAETTLEPPAASTSKPDEAPEEPPTETTLKPPAAST------TKPDEAAEQPPAEATLKPPAPSTSNPDEAPEEPPAETT 494
Cdd:PHA03307   87 TPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPPpaspppSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDA 166
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 697148403  495 LEPPADSTSKPAEEPEEPPAETSLKPPADSISKPAEAPAEQPKEEEHVYAGATAASMDHDNA 556
Cdd:PHA03307  167 ASSRQAALPLSSPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSA 228
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
379-535 1.40e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 44.86  E-value: 1.40e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697148403 379 AETTPQCMEEMTEKPVAGTTEVPDEAPEKSPVEAPAETAGKSPAETTLEPPAASTSKPDEAPEEPPTETtlKPPAASTTK 458
Cdd:PRK07994 373 QSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKKS--EPAAASRAR 450
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 697148403 459 PDEAAEQPPAEatlKPPAPSTSNPDEAPEEPPAETTLEPPADSTSKPAEEPEEPPAETSLKPPaDSISKPAEAPAEQ 535
Cdd:PRK07994 451 PVNSALERLAS---VRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVATPKALKKALEHEKTP-ELAAKLAAEAIER 523
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
413-556 1.44e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 44.86  E-value: 1.44e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697148403 413 PAETAGKSPAETTLEPPAASTSKPDEAPEEPPTETTLKPPAASTTKPDEAAEQPPAEAT-----LKPPAPSTSNPDEAPE 487
Cdd:PRK07994 361 PAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTsqllaARQQLQRAQGATKAKK 440
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 697148403 488 EPPAETTLEPPADSTSKPAEEPEEPPAETSLKPPADSISKPAEAPAEQPKEEEHVYAGATAASMDHDNA 556
Cdd:PRK07994 441 SEPAAASRARPVNSALERLASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVATPKALKKALEHEKT 509
PLN03209 PLN03209
translocon at the inner envelope of chloroplast subunit 62; Provisional
340-537 1.61e-04

translocon at the inner envelope of chloroplast subunit 62; Provisional


Pssm-ID: 178748 [Multi-domain]  Cd Length: 576  Bit Score: 44.53  E-value: 1.61e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697148403 340 PAEPTQKQPAPedttKPVPNFAPMQLQKSSTDSLTGNTLAETTPQCMEEMTEKPVAGTTEVPDEAPEKSPVEAPaetagK 419
Cdd:PLN03209 388 PTPPSSSPASS----KSVDAVAKPAEPDVVPSPGSASNVPEVEPAQVEAKKTRPLSPYARYEDLKPPTSPSPTA-----P 458
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697148403 420 SPAETTLEPPAASTSKPDEAPEEPPTETTLKPPAASTTKPDEAAEQPPAEATlkPPAPSTSNPDEAPEEPPAETTLEPPA 499
Cdd:PLN03209 459 TGVSPSVSSTSSVPAVPDTAPATAATDAAAPPPANMRPLSPYAVYDDLKPPT--SPSPAAPVGKVAPSSTNEVVKVGNSA 536
                        170       180       190
                 ....*....|....*....|....*....|....*....
gi 697148403 500 DSTSKPAEEPEEPPAETSLKP-PADSISKPAEAPAEQPK 537
Cdd:PLN03209 537 PPTALADEQHHAQPKPRPLSPyTMYEDLKPPTSPTPSPV 575
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
392-549 3.55e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 43.32  E-value: 3.55e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697148403 392 KPVAGTTEVPDEAPEKSPVE-APAETAGKSPAETTLEPPAASTSKPDEAPEEPPTETTLKPPAASTTKPDEAAEQPPAEA 470
Cdd:PRK07994 362 AAPLPEPEVPPQSAAPAASAqATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKKS 441
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 697148403 471 tlKPPAPSTSNPDEAPEEPPAETtlePPADSTSKPAEEPEEPPAETSlKPPADSISKPAEAPAEQPKEEEHVYAGATAA 549
Cdd:PRK07994 442 --EPAAASRARPVNSALERLASV---RPAPSALEKAPAKKEAYRWKA-TNPVEVKKEPVATPKALKKALEHEKTPELAA 514
COG5373 COG5373
Uncharacterized membrane protein [Function unknown];
423-491 3.74e-04

Uncharacterized membrane protein [Function unknown];


Pssm-ID: 444140 [Multi-domain]  Cd Length: 854  Bit Score: 43.45  E-value: 3.74e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 697148403 423 ETTLEPPAASTSKPDEAPEEPPTETTLKPPAASTTKPDEAAEQPPAEATLKPPAPSTSNPDEAPEEPPA 491
Cdd:COG5373   34 EAELAEAAEAASAPAEPEPEAAAAATAAAPEAAPAPVPEAPAAPPAAAEAPAPAAAAPPAEAEPAAAPA 102
PRK06347 PRK06347
1,4-beta-N-acetylmuramoylhydrolase;
367-493 4.37e-04

1,4-beta-N-acetylmuramoylhydrolase;


Pssm-ID: 180536 [Multi-domain]  Cd Length: 592  Bit Score: 43.14  E-value: 4.37e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697148403 367 KSSTDSLTGNTLAETTPQCmeemTEKPVAGTtEVPDEAPEKSPVEAP---AETAGKSPAETTLEPPaaSTSKPDEAPEEP 443
Cdd:PRK06347  20 KKSKKFKTGATIAGVTAIA----TSITVPGI-EVIVSADETAPADEAsksAEANTTKEAPATATPE--NTTEPTVEPKQT 92
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 697148403 444 PTETTLKPPAASttkpdeaaeQPPAEATLKPPA-PST-SNPDEAPEEPPAET 493
Cdd:PRK06347  93 ETKEQTKTPEEK---------QPAAKQVEKAPAePATvSNPDNATSSSTPAT 135
PTZ00441 PTZ00441
sporozoite surface protein 2 (SSP2); Provisional
399-504 4.94e-04

sporozoite surface protein 2 (SSP2); Provisional


Pssm-ID: 240420 [Multi-domain]  Cd Length: 576  Bit Score: 43.03  E-value: 4.94e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697148403 399 EVPDEAPEKSPveAPAETAGKSPAETTLEPPAastskPDEAPEEPPT-ETTLKPPAASTTKPDEAAEQP-----PAEATL 472
Cdd:PTZ00441 321 DVPDNPQDPVP--PPNEGKDGNPNEENLFPPG-----DDEVPDESNVpPNPPNVPGGSNSEFSSDVENPpnppnPDIPEQ 393
                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 697148403 473 KPPAPSTSNPD---EAPEEP--PAETTLEPPADSTSK 504
Cdd:PTZ00441 394 EPNIPEDSNKEvpeDVPMEPedDRDNNFNEPKKPENK 430
PHA03247 PHA03247
large tegument protein UL36; Provisional
317-532 5.92e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 43.00  E-value: 5.92e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697148403  317 GNTTKVYPPAETTQKAQTESRIKPAEPTQKQPAPedttkPVPNFAPMQLQKSSTDSLTGNTLAETTPQCMEEMTEKPVAG 396
Cdd:PHA03247 2753 GPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRP-----AVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGP 2827
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697148403  397 ----TTEVPDEAPEKSPVEAPAETAGKSPA---ETTLEPPAASTSKPDEAPEEPPTETTLKPPAASTTKPdeaAEQPPAE 469
Cdd:PHA03247 2828 lpppTSAQPTAPPPPPGPPPPSLPLGGSVApggDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTES---FALPPDQ 2904
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 697148403  470 ATLKPPAPSTSNPDEAPEEPPAETTLEPPadstsKPAEEPEEPPAETSLKPPADSISKPAEAP 532
Cdd:PHA03247 2905 PERPPQPQAPPPPQPQPQPPPPPQPQPPP-----PPPPRPQPPLAPTTDPAGAGEPSGAVPQP 2962
PTZ00144 PTZ00144
dihydrolipoamide succinyltransferase; Provisional
393-487 6.31e-04

dihydrolipoamide succinyltransferase; Provisional


Pssm-ID: 240289 [Multi-domain]  Cd Length: 418  Bit Score: 42.36  E-value: 6.31e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697148403 393 PVAGT-TEVPDEAPEKSPVEAP---AETAGKSPAETTLEPPAASTSKPDEAPEEPPTETtlKPPAASTTKPDEAAEQPPA 468
Cdd:PTZ00144  93 PASGViTKIFAEEGDTVEVGAPlseIDTGGAPPAAAPAAAAAAKAEKTTPEKPKAAAPT--PEPPAASKPTPPAAAKPPE 170
                         90
                 ....*....|....*....
gi 697148403 469 EATLKPPAPSTSNPDEAPE 487
Cdd:PTZ00144 171 PAPAAKPPPTPVARADPRE 189
DUF4045 pfam13254
Domain of unknown function (DUF4045); This presumed domain is functionally uncharacterized. ...
305-487 8.67e-04

Domain of unknown function (DUF4045); This presumed domain is functionally uncharacterized. This domain family is found in bacteria and eukaryotes, and is typically between 384 and 430 amino acids in length.


Pssm-ID: 433066 [Multi-domain]  Cd Length: 415  Bit Score: 42.08  E-value: 8.67e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697148403  305 LKQQKIGNDITRGNTTKVYPPAETTQKAQTESRIKPAEpTQKQPAPEDTTKPVPNFAPMQLQKSSTDSLTGNTLAETTPq 384
Cdd:pfam13254 185 IRQSRASVDLGRPNSFKEVTPVGLMRSPAPGGHSKSPS-VSGISADSSPTKEEPSEEADTLSTDKEQSPAPTSASEPPP- 262
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697148403  385 cmEEMTEKPVAGTTEVPDEAPEKSPVEAPAETAGKSPAETTLEPPAAStskpdeapEEPPTETTLKPPAASTTKPD--EA 462
Cdd:pfam13254 263 --KTKELPKDSEEPAAPSKSAEASTEKKEPDTESSPETSSEKSAPSLL--------SPVSKASIDKPLSSPDRDPLspKP 332
                         170       180
                  ....*....|....*....|....*....
gi 697148403  463 AEQPPAE---ATLKP-PAPSTSNPDEAPE 487
Cdd:pfam13254 333 KPQSPPKdfrANLRSrEVPKDKSKKDEPE 361
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
389-463 1.13e-03

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 41.42  E-value: 1.13e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 697148403  389 MTEKPVAGTTEVPDEAPEKSPVEAPAETAGKSPAETTLEPPaASTSKPDEAPEEPPTETTLKPPAASTTKPDEAA 463
Cdd:TIGR00601  73 MVSKPKTGTGKVAPPAATPTSAPTPTPSPPASPASGMSAAP-ASAVEEKSPSEESATATAPESPSTSVPSSGSDA 146
PRK14948 PRK14948
DNA polymerase III subunit gamma/tau;
404-484 1.43e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237862 [Multi-domain]  Cd Length: 620  Bit Score: 41.49  E-value: 1.43e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697148403 404 APEKSPVEAPAETAGKSPAETTLEPPAASTSKPDEAPEEPPTETTLKPPAASTTKPDEAAEQPPAEATLKPPaPSTSNPD 483
Cdd:PRK14948 517 ASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSSPPPPIPEEPTPSP-TKDSSPE 595

                 .
gi 697148403 484 E 484
Cdd:PRK14948 596 E 596
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
317-556 1.44e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 41.51  E-value: 1.44e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697148403 317 GNTTKVYPPAETTQKAQTESRIKPAEPTQkQPAPEDTTKPVPNFAPMQLQKSSTDSLTGNTLAETTPQcmeemtekpvag 396
Cdd:PRK07764 589 GPAPGAAGGEGPPAPASSGPPEEAARPAA-PAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPK------------ 655
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697148403 397 ttEVPDEAPEKSPVEAPAETAGKSPAETTLEPPAASTSKPDEAPEEPPTettlkpPAASTTKPDEAAEQPPAEATLKPPA 476
Cdd:PRK07764 656 --HVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPA------PAPAATPPAGQADDPAAQPPQAAQG 727
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697148403 477 PSTSNPDEAPEEPPAETTLEPPADSTSKPAEEPEEPPaetslkPPADSISKPAEAPAEQPKEEEHVYAGATAASMDHDNA 556
Cdd:PRK07764 728 ASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAP------APAAAPAAAPPPSPPSEEEEMAEDDAPSMDDEDRRDA 801
PRK06347 PRK06347
1,4-beta-N-acetylmuramoylhydrolase;
429-549 1.59e-03

1,4-beta-N-acetylmuramoylhydrolase;


Pssm-ID: 180536 [Multi-domain]  Cd Length: 592  Bit Score: 41.22  E-value: 1.59e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697148403 429 PAASTSKPDEAPEEPPTETTLKPPaaSTTKPDEAAEQPPAEATLKPPAPSTSnPDEAPEEPPAET-TLEPPADSTSKPAE 507
Cdd:PRK06347  57 PADEASKSAEANTTKEAPATATPE--NTTEPTVEPKQTETKEQTKTPEEKQP-AAKQVEKAPAEPaTVSNPDNATSSSTP 133
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 697148403 508 EPEEPPAETSLKPPA--DSISKPAEAPAEQPKEEEHVYAGATAA 549
Cdd:PRK06347 134 ATYNLLQKSALRSGAtvQSFIQTIQASSSQIAAENDLYASVMIA 177
PHA03247 PHA03247
large tegument protein UL36; Provisional
324-540 1.69e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 41.46  E-value: 1.69e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697148403  324 PPAETTQKAQTESRIKPAEPTQKQPAPEDTTKPVPNFAPMQLQKSSTDSLTGNTLAETTPQcmeeMTEKPVAGTtevPDE 403
Cdd:PHA03247 2701 PPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPP----TTAGPPAPA---PPA 2773
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697148403  404 APEKSPVEAPAETAGKSPAETTLEPPAASTSKPDEAPEEPPTETTLKPPAASTTKPDEAAEQPPAEATLKPPAPSTSNPD 483
Cdd:PHA03247 2774 APAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLG 2853
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 697148403  484 -----------EAPEEPPA---ETTLEPPADSTSKPAEEPEEPPAETSLKPPADSISKPAEAPAEQPKEEE 540
Cdd:PHA03247 2854 gsvapggdvrrRPPSRSPAakpAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPP 2924
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
324-489 1.80e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 41.01  E-value: 1.80e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697148403 324 PPAETTQKAQTESRIKPA--------EPTQKQPAPEDTTKPVPNFAPMQLQKSSTDSLTGNTLAETTPQCMEEMTEKPVA 395
Cdd:PRK12323 412 AAAAARAVAAAPARRSPApealaaarQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAP 491
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697148403 396 GTTEVP--DEAPEKSPVEAPAETAGKSP---AETTLEPPAASTSKPDEAPEEPPTETTLkPPAASTTKPDEAAEQPPAEA 470
Cdd:PRK12323 492 ADDDPPpwEELPPEFASPAPAQPDAAPAgwvAESIPDPATADPDDAFETLAPAPAAAPA-PRAAAATEPVVAPRPPRASA 570
                        170
                 ....*....|....*....
gi 697148403 471 TLKPPAPSTSNPDEAPEEP 489
Cdd:PRK12323 571 SGLPDMFDGDWPALAARLP 589
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
369-458 1.83e-03

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 41.41  E-value: 1.83e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697148403  369 STDSLTGNTLAETTPQCMEEMTEKPVAGTTEVPDEAPEKSPVEAPAETAGKSPAETTLEPPAASTSKPDEAPEEPPTETT 448
Cdd:PRK12270   40 STAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEVTP 119
                          90
                  ....*....|
gi 697148403  449 LKPPAASTTK 458
Cdd:PRK12270  120 LRGAAAAVAK 129
PHA03291 PHA03291
envelope glycoprotein I; Provisional
400-492 1.87e-03

envelope glycoprotein I; Provisional


Pssm-ID: 223033 [Multi-domain]  Cd Length: 401  Bit Score: 40.71  E-value: 1.87e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697148403 400 VPDEAPEKSPVEAPAETAGKSPAETTLEPpaaSTSKPDEAPEEPPTETTlkPPAASTTKPDEAAEQPPAEATLKPPAPST 479
Cdd:PHA03291 190 LPLSAPRLGPADVFVPATPRPTPRTTASP---ETTPTPSTTTSPPSTTI--PAPSTTIAAPQAGTTPEAEGTPAPPTPGG 264
                         90
                 ....*....|...
gi 697148403 480 SNPDEAPEEPPAE 492
Cdd:PHA03291 265 GEAPPANATPAPE 277
PHA03247 PHA03247
large tegument protein UL36; Provisional
321-541 1.90e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 41.46  E-value: 1.90e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697148403  321 KVYPPAETTQKAQTEsriKPAEPTQ--KQPAPEDTTKPVPNFA----PMQLQKSSTDSLTGNTLAETTPQCMEEMTEKPV 394
Cdd:PHA03247 2660 RVSRPRRARRLGRAA---QASSPPQrpRRRAARPTVGSLTSLAdpppPPPTPEPAPHALVSATPLPPGPAAARQASPALP 2736
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697148403  395 AgttevpDEAPEKSPvEAPAETAGKSPAETTLEPPAASTSKPDEAPEEPPTETTLKPPAASTTKPDEAAEQPPAEATLKP 474
Cdd:PHA03247 2737 A------APAPPAVP-AGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPA 2809
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 697148403  475 PAPStSNPDEAPEEPPAetTLEPPADSTSKPAEEPEEPPAETSLKP-----PADSISK--PAEAPAEQPKEEEH 541
Cdd:PHA03247 2810 AVLA-PAAALPPAASPA--GPLPPPTSAQPTAPPPPPGPPPPSLPLggsvaPGGDVRRrpPSRSPAAKPAAPAR 2880
PRK14954 PRK14954
DNA polymerase III subunits gamma and tau; Provisional
394-474 1.92e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184918 [Multi-domain]  Cd Length: 620  Bit Score: 41.08  E-value: 1.92e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697148403 394 VAGTTEVPDEAPEKSPVEAPAETAGKSPAETTLEPPAASTSKPDEAPEEPPTETtlkPPAASTTKPdeAAEQPPAEATLK 473
Cdd:PRK14954 384 PAGSPDVKKKAPEPDLPQPDRHPGPAKPEAPGARPAELPSPASAPTPEQQPPVA---RSAPLPPSP--QASAPRNVASGK 458

                 .
gi 697148403 474 P 474
Cdd:PRK14954 459 P 459
Pneumo_att_G pfam05539
Pneumovirinae attachment membrane glycoprotein G;
321-491 2.27e-03

Pneumovirinae attachment membrane glycoprotein G;


Pssm-ID: 114270 [Multi-domain]  Cd Length: 408  Bit Score: 40.42  E-value: 2.27e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697148403  321 KVYPPAETTqkAQTESriKPAEPTQKQPAPEDTTKPVPNfaPMQLQKSstdslTGNTLAETTPQCMEEMTEKPVAG--TT 398
Cdd:pfam05539 166 KEPKTAVTT--SKTTS--WPTEVSHPTYPSQVTPQSQPA--TQGHQTA-----TANQRLSSTEPVGTQGTTTSSNPepQT 234
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697148403  399 EVP--DEAPEKSPVEAPAETagkSPAETTleppAASTSKPDEAPEEPPTETTLKPPAASTTKPDEAAEQPPAEATLKPPA 476
Cdd:pfam05539 235 EPPpsQRGPSGSPQHPPSTT---SQDQST----TGDGQEHTQRRKTPPATSNRRSPHSTATPPPTTKRQETGRPTPRPTA 307
                         170
                  ....*....|....*
gi 697148403  477 PSTSNPDEAPEEPPA 491
Cdd:pfam05539 308 TTQSGSSPPHSSPPG 322
PRK08691 PRK08691
DNA polymerase III subunits gamma and tau; Validated
360-556 2.37e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236333 [Multi-domain]  Cd Length: 709  Bit Score: 40.85  E-value: 2.37e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697148403 360 FAPMQLQKSSTDSLTGNTLAETtPQCMEEMTEKPVAGTTEVPDEAPEKSPVEAPAEtAGKSPAETTLEPPA--ASTSKPD 437
Cdd:PRK08691 358 FAPLAAASCDANAVIENTELQS-PSAQTAEKETAAKKPQPRPEAETAQTPVQTASA-AAMPSEGKTAGPVSnqENNDVPP 435
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697148403 438 EAPEEPPTET---TLKPPAASTTKPDEAAEQPPAEATLKPPAPSTSNP--DEAPEEPPAETTLEPPADSTSKPAEEPEEP 512
Cdd:PRK08691 436 WEDAPDEAQTaagTAQTSAKSIQTASEAETPPENQVSKNKAADNETDAplSEVPSENPIQATPNDEAVETETFAHEAPAE 515
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*
gi 697148403 513 PAETSLKPPADSiskPAEAPAEQPKEE-EHVYAGATAASMDHDNA 556
Cdd:PRK08691 516 PFYGYGFPDNDC---PPEDGAEIPPPDwEHAAPADTAGGGADEEA 557
HOX smart00389
Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key ...
13-75 2.41e-03

Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key developmental processes


Pssm-ID: 197696 [Multi-domain]  Cd Length: 57  Bit Score: 36.46  E-value: 2.41e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 697148403    13 RFNATEVAEMEAILQAHNatMPAREVLVALAEKfsssaersgkIMVQMKQVWNWFQNRRYAIR 75
Cdd:smart00389   7 SFTPEQLEELEKEFQKNP--YPSREEREELAKK----------LGLSERQVKVWFQNRRAKWK 57
PTZ00144 PTZ00144
dihydrolipoamide succinyltransferase; Provisional
432-498 2.72e-03

dihydrolipoamide succinyltransferase; Provisional


Pssm-ID: 240289 [Multi-domain]  Cd Length: 418  Bit Score: 40.44  E-value: 2.72e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 697148403 432 STSKPDEAPEEPPTEttlKPPAASTTKPDEAAEQPPAEatlKPPAPSTSNPDEAPEEPPAETTLEPP 498
Cdd:PTZ00144 116 SEIDTGGAPPAAAPA---AAAAAKAEKTTPEKPKAAAP---TPEPPAASKPTPPAAAKPPEPAPAAK 176
SAP130_C pfam16014
Histone deacetylase complex subunit SAP130 C-terminus;
393-542 2.75e-03

Histone deacetylase complex subunit SAP130 C-terminus;


Pssm-ID: 464973 [Multi-domain]  Cd Length: 371  Bit Score: 40.30  E-value: 2.75e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697148403  393 PVAGTTE-VPDEAPEKSPVEAPAETAGKSPAETTLEPPAASTSKPDEAPEEPPTETTLKPPAASTTKPDEAAEQPPAEAT 471
Cdd:pfam16014  33 PVTVAVEaLPGQNSEQQTASASPPSQHPAQAIPTILAPAAPPSQPSVVLSTLPAAMAVTPPIPASMANVVAPPTQPAASS 112
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 697148403  472 LKPPAPSTSNPDE--APEEPPAETTLEPPADSTSKPAEEPEEPPAETSLkPPADSIskPAEAPAEQPKEEEHV 542
Cdd:pfam16014 113 TAACAVSSVLPEIkiKQEAEPMDTSQSVPPLTPTSISPALTSLANNLSV-PAGDLL--PGASPRKKPRKQQHV 182
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
393-557 2.86e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 40.63  E-value: 2.86e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697148403 393 PVAGTTEVPDEAPEKSPVEAPAETAGKSPAETTLEPPAASTSKPD-EAPEEPPTETTLKPPAASTTKPDEAAEQPPAEAT 471
Cdd:PRK12323 375 ATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVaAAPARRSPAPEALAAARQASARGPGGAPAPAPAP 454
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697148403 472 LKPPAPSTSNPDEAPEEPPAETTLEPP-ADSTSKPAEEPEEPpaetslkPPADSIskPAEAPAEQPKEEEHVYAGATAAS 550
Cdd:PRK12323 455 AAAPAAAARPAAAGPRPVAAAAAAAPArAAPAAAPAPADDDP-------PPWEEL--PPEFASPAPAQPDAAPAGWVAES 525

                 ....*..
gi 697148403 551 MDHDNAS 557
Cdd:PRK12323 526 IPDPATA 532
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
439-531 2.94e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 40.56  E-value: 2.94e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697148403 439 APEEPPTETTLKPPAASTTKPDEAAEQPPAEATLKPPAPSTSNPDEAPEEPPAETTLEPPADSTSKPAEEPEEPPAETSL 518
Cdd:PRK14950 361 VPVPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPVPHTPESAPKLTRAAIPVDE 440
                         90
                 ....*....|...
gi 697148403 519 KPPADSISKPAEA 531
Cdd:PRK14950 441 KPKYTPPAPPKEE 453
motB PRK05996
MotB family protein;
399-492 2.98e-03

MotB family protein;


Pssm-ID: 235665 [Multi-domain]  Cd Length: 423  Bit Score: 40.07  E-value: 2.98e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697148403 399 EVPDEAPEKSPVEAPAETAGKSPAETTLEPPAASTSKPDEAPEEPPTETTLKPPAASTTKPDEAAEQPPAEATLKPPAPS 478
Cdd:PRK05996 191 EVTTAGDLLPPGQAREQAQGAKSATAAPATVPQAAPLPQAQPKKAATEEELIADAKKAATGEPAANAAKAAKPEPMPDDQ 270
                         90
                 ....*....|....
gi 697148403 479 TSNPDEAPEEPPAE 492
Cdd:PRK05996 271 QKEAEQLQAAIAQA 284
PHA02682 PHA02682
ORF080 virion core protein; Provisional
332-498 3.05e-03

ORF080 virion core protein; Provisional


Pssm-ID: 177464 [Multi-domain]  Cd Length: 280  Bit Score: 39.84  E-value: 3.05e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697148403 332 AQTESRIKPAEPTQKQPAPEDTTKPVPNFAPMQLQKSSTDSLTGNTLAETTPQCMEEMT-EKPVAGTTEVPDEAPEkSPV 410
Cdd:PHA02682  19 ADTSSSLFTKCPQATIPAPAAPCPPDADVDPLDKYSVKEAGRYYQSRLKANSACMQRPSgQSPLAPSPACAAPAPA-CPA 97
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697148403 411 EAPAetagkspaettlePPAASTSKPDEAPEEPPTETTLKPPAASTTKPDEAAEQPPAEATLKPPAPSTSNPDEAPEEPP 490
Cdd:PHA02682  98 CAPA-------------APAPAVTCPAPAPACPPATAPTCPPPAVCPAPARPAPACPPSTRQCPPAPPLPTPKPAPAAKP 164
                        170
                 ....*....|
gi 697148403 491 A--ETTLEPP 498
Cdd:PHA02682 165 IflHNQLPPP 174
PRK10927 PRK10927
cell division protein FtsN;
384-504 4.05e-03

cell division protein FtsN;


Pssm-ID: 236797 [Multi-domain]  Cd Length: 319  Bit Score: 39.66  E-value: 4.05e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697148403 384 QCMEEMTEKPVAgTTEVP--DEAPEKSPVEAPAETAGKSPAETTlepPAASTSKPDEAPEEPPTETTLKPPA-ASTTKPD 460
Cdd:PRK10927 124 QMQADMRQQPTQ-LVEVPwnEQTPEQRQQTLQRQRQAQQLAEQQ---RLAQQSRTTEQSWQQQTRTSQAAPVqAQPRQSK 199
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 697148403 461 EAAEQPPAEATLKPPAPSTSNPdEAPEEPPAETTLEPPADSTSK 504
Cdd:PRK10927 200 PASTQQPYQDLLQTPAHTTAQS-KPQQAAPVTRAADAPKPTAEK 242
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
390-491 4.38e-03

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 40.26  E-value: 4.38e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697148403  390 TEKPVAGTTEVPDEAPEKSPVEAPAETAGKSPAETTLEPPAASTSKPDEAPEEPPTETTLKPPAASTTKPdEAAEQPPAE 469
Cdd:PRK12270   39 GSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAP-AAAAVEDEV 117
                          90       100
                  ....*....|....*....|...
gi 697148403  470 ATLKPPAPST-SNPDEAPEEPPA 491
Cdd:PRK12270  118 TPLRGAAAAVaKNMDASLEVPTA 140
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
437-552 4.57e-03

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 39.87  E-value: 4.57e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697148403  437 DEAPEEPPtettlkPPAASTTKPDEAAEQPPAEATLKPPAPSTSNPDEAPEEPPAETTLEPPADSTSKPAEEPEeppaeT 516
Cdd:PRK12270   35 DYGPGSTA------APTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAA-----A 103
                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 697148403  517 SLKPPADSISKPAEAPAEQPkeeehvyAGATAASMD 552
Cdd:PRK12270  104 AAAAPAAAAVEDEVTPLRGA-------AAAVAKNMD 132
Gag_spuma pfam03276
Spumavirus gag protein;
412-536 4.64e-03

Spumavirus gag protein;


Pssm-ID: 460872 [Multi-domain]  Cd Length: 614  Bit Score: 39.73  E-value: 4.64e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697148403  412 APAETAGKSPAETTLEPPAASTSKPDEAPEEPPTETTLKPPAASTTKPDEaaeQPPAEATLKPPAPSTSNPD-----EAP 486
Cdd:pfam03276 179 SPGAQGGIPPGASFSGLPSLPAIGGIHLPAIPGIHARAPPGNIARSLGDD---IMPSLGDAGMPQPRFAFHPgnpfaEAE 255
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 697148403  487 EEPPAETTLEPPADSTSKPAEEPEEPPAETSLKPPADSISKPAEAPAEQP 536
Cdd:pfam03276 256 GHPFAEAEGERPRDIPRAPRIDAPSAPAIPAIQPIAPPMIPPIGAPIPIP 305
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
435-534 4.81e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 39.85  E-value: 4.81e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697148403 435 KPDEAPEEPPTETTLKPPAASTTKPDEAAEQPPAEATLKPPAPSTSNPDEAPEEPPAETTLEPPADSTSKPAEEPEEPPA 514
Cdd:PRK07994 360 HPAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAK 439
                         90       100
                 ....*....|....*....|
gi 697148403 515 ETslKPPADSISKPAEAPAE 534
Cdd:PRK07994 440 KS--EPAAASRARPVNSALE 457
PRK10263 PRK10263
DNA translocase FtsK; Provisional
323-533 4.86e-03

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 40.07  E-value: 4.86e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697148403  323 YPPAETTQKAQTESRikpaEPTQKQPAPEDTTKPVPNFAPMQLQKSSTDSLTGNTLAETTPQCMEEMTEKPVAGTTEVPD 402
Cdd:PRK10263  380 YPQQSQYAQPAVQYN----EPLQQPVQPQQPYYAPAAEQPAQQPYYAPAPEQPAQQPYYAPAPEQPVAGNAWQAEEQQST 455
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697148403  403 EAPEksPVEAPAETAGKSPAETTLEPPAASTSKPDEAPEEPPTETT--LKPPAASTTKPDE--AAEQPPAEATLKP-PAP 477
Cdd:PRK10263  456 FAPQ--STYQTEQTYQQPAAQEPLYQQPQPVEQQPVVEPEPVVEETkpARPPLYYFEEVEEkrAREREQLAAWYQPiPEP 533
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 697148403  478 STSNPDEAPEEPPAETTLEPPADSTSKPAEEPEEPPAETSLKPPADSISKPAEAPA 533
Cdd:PRK10263  534 VKEPEPIKSSLKAPSVAAVPPVEAAAAVSPLASGVKKATLATGAAATVAAPVFSLA 589
PHA03247 PHA03247
large tegument protein UL36; Provisional
339-528 5.50e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 39.92  E-value: 5.50e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697148403  339 KPAE---PTQKQPAPEDTTKPVPN-FAPMQLQKSSTDSLTGNTLAETTPQCM-------EEMTEKPVAGTTevPDEAPEK 407
Cdd:PHA03247 2482 RPAEarfPFAAGAAPDPGGGGPPDpDAPPAPSRLAPAILPDEPVGEPVHPRMltwirglEELASDDAGDPP--PPLPPAA 2559
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697148403  408 SPVEAPAETAGKSPAETTLEPPAASTSKPDEAPEEPPTETTLKPPAASTTKPDEAAEQPPAEATLKPPAPSTSNPDEAPE 487
Cdd:PHA03247 2560 PPAAPDRSVPPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPD 2639
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|.
gi 697148403  488 EPPAETTLEPPADSTSKPAEEPEEPPAETSLKPPADSISKP 528
Cdd:PHA03247 2640 PHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPP 2680
homeodomain cd00086
Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic ...
13-75 5.60e-03

Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.


Pssm-ID: 238039 [Multi-domain]  Cd Length: 59  Bit Score: 35.30  E-value: 5.60e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 697148403  13 RFNATEVAEMEAILQAHNatMPAREVLVALAEKfsssaersgkIMVQMKQVWNWFQNRRYAIR 75
Cdd:cd00086    6 RFTPEQLEELEKEFEKNP--YPSREEREELAKE----------LGLTERQVKIWFQNRRAKLK 56
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
423-549 5.62e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 39.41  E-value: 5.62e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697148403 423 ETTLEPPAASTSKPDEAPEEPPTETTLKPPAASTTKPDEAAEQPPAEATLKPPAPSTSNPDEAP-----EEPPAETTLEP 497
Cdd:PRK14950 357 EALLVPVPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPvphtpESAPKLTRAAI 436
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 697148403 498 PADSTSKPAEEPEEPPAETSLKPPADSISKpAEAPAEQPKEEEHVYAGATAA 549
Cdd:PRK14950 437 PVDEKPKYTPPAPPKEEEKALIADGDVLEQ-LEAIWKQILRDVPPRSPAVQA 487
PHA03247 PHA03247
large tegument protein UL36; Provisional
319-501 6.09e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 39.54  E-value: 6.09e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697148403  319 TTKVYPPAETTQKAQTESRIKPAEPTQKQPAPEDTTKPVPNFAPMQ--------LQKSSTDSLTGNTLAETTPQCMEEMT 390
Cdd:PHA03247 2808 PAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGgsvapggdVRRRPPSRSPAAKPAAPARPPVRRLA 2887
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697148403  391 EKPVAGTTEvPDEAPEKSPVEAPAETAGKSPAETTLEPPAASTSKPDEAP--EEPPTETTLKPPAASTTKPDEAAEQPPA 468
Cdd:PHA03247 2888 RPAVSRSTE-SFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPprPQPPLAPTTDPAGAGEPSGAVPQPWLGA 2966
                         170       180       190
                  ....*....|....*....|....*....|...
gi 697148403  469 EATLKPPAPSTSNPDEAPEEPPAETTLEPPADS 501
Cdd:PHA03247 2967 LVPGRVAVPRFRVPQPAPSREAPASSTPPLTGH 2999
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
410-549 6.45e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 39.58  E-value: 6.45e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697148403 410 VEAPAETAGKSPAETTLEPPAASTSKPDEAPEEPPtettLKPPAASTTKPDEAAEQPPAEATLKPPAPSTSNPDEAPEEP 489
Cdd:PRK07764 378 LERLERRLGVAGGAGAPAAAAPSAAAAAPAAAPAP----AAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGA 453
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 697148403 490 PAettlEPPADSTSKPAEEPEEPPAETSLKPPADSISKPAEAPAEQPKEEEHVYAGATAA 549
Cdd:PRK07764 454 PS----PPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGADDA 509
PRK08691 PRK08691
DNA polymerase III subunits gamma and tau; Validated
330-501 7.55e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236333 [Multi-domain]  Cd Length: 709  Bit Score: 39.31  E-value: 7.55e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697148403 330 QKAQTESRIKPAEPTQKQPAPEDTTKPvpnfAPMQLQKSSTDSLTGNTLAETTPQcmEEMTEKPVAgttEVPDEAPEKSP 409
Cdd:PRK08691 378 QSPSAQTAEKETAAKKPQPRPEAETAQ----TPVQTASAAAMPSEGKTAGPVSNQ--ENNDVPPWE---DAPDEAQTAAG 448
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697148403 410 VeAPAETAGKSPAETTLEPPAASTSKPDEAPEE--PPTETTLKPPAASTTKPDEAAE-QPPAEATLKPPAPSTSNPD--- 483
Cdd:PRK08691 449 T-AQTSAKSIQTASEAETPPENQVSKNKAADNEtdAPLSEVPSENPIQATPNDEAVEtETFAHEAPAEPFYGYGFPDndc 527
                        170       180
                 ....*....|....*....|.
gi 697148403 484 ---EAPEEPPAETTLEPPADS 501
Cdd:PRK08691 528 ppeDGAEIPPPDWEHAAPADT 548
PRK14971 PRK14971
DNA polymerase III subunit gamma/tau;
388-543 8.17e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237874 [Multi-domain]  Cd Length: 614  Bit Score: 38.99  E-value: 8.17e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697148403 388 EMTEKPVAGTTEVPDEAPEKSPVEAPAetagkSPAETTLEPPAASTSKPDEAPEEPPTETTLKPPAASTTKPdeAAEQPP 467
Cdd:PRK14971 353 ELTLIQLAQLTQKGDDASGGRGPKQHI-----KPVFTQPAAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQ--PAGTPP 425
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 697148403 468 AeATLKPPAPSTSNPdeapeeppaETTLEPPADSTSKPAEEPEEPPAETSLKPpadSISKPAEAPAEQPKEEEHVY 543
Cdd:PRK14971 426 T-VSVDPPAAVPVNP---------PSTAPQAVRPAQFKEEKKIPVSKVSSLGP---STLRPIQEKAEQATGNIKEA 488
PHA03269 PHA03269
envelope glycoprotein C; Provisional
420-556 9.45e-03

envelope glycoprotein C; Provisional


Pssm-ID: 165527 [Multi-domain]  Cd Length: 566  Bit Score: 38.94  E-value: 9.45e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697148403 420 SPAETTLEPPAASTSKPDEAPEepptettlkPPAASTTKPDEAAeqPPAEATLKPPAPSTSNPDEAPEEPpaettlEPPA 499
Cdd:PHA03269  24 TNIPIPELHTSAATQKPDPAPA---------PHQAASRAPDPAV--APTSAASRKPDLAQAPTPAASEKF------DPAP 86
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 697148403 500 DSTSKPAEEPEEPPAETSLKPPAdsiSKPAEAPAEQP-KEEEHVYAGATAASMDHDNA 556
Cdd:PHA03269  87 APHQAASRAPDPAVAPQLAAAPK---PDAAEAFTSAAqAHEAPADAGTSAASKKPDPA 141
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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