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Conserved domains on  [gi|694881241|gb|AIS75422|]
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cytochrome b, partial (mitochondrion) [Brotogeris jugularis]

Protein Classification

cytochrome b( domain architecture ID 11475906)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), a respiratory chain that generates an electrochemical potential coupled to ATP synthesis

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-319 0e+00

cytochrome b; Provisional


:

Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 637.33  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241   1 SLAFSSVANMCRNVQYGWLIRNIHANGASFFFICIYLHIAQGFYYGSYLYKETWNTGVILLLTLMATAFVGYVLPWGQMS 80
Cdd:MTH00119  61 SLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMS 140

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241  81 FWGAMVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMISGLVLIHLTFLYETGSNNPLGLPSNCDKIP 160
Cdd:MTH00119 141 FWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIP 220

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241 161 FHPYFSLKDLLGFTIMLLMLTSLALFSPNLLGDPENFTPANPLVTPTHIKPEWYFLFAYAILRSIPNKLGGVLALAASVL 240
Cdd:MTH00119 221 FHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASIL 300

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 694881241 241 VLFLSPLLHKSKQRTMAFRPASQLLFWTLAANLFILTWVGSQPVKHPFIIIGQLASLTYFTIILILLPITSSLENKILN 319
Cdd:MTH00119 301 ILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTILLILFPLLGALENKMLN 379
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-319 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 637.33  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241   1 SLAFSSVANMCRNVQYGWLIRNIHANGASFFFICIYLHIAQGFYYGSYLYKETWNTGVILLLTLMATAFVGYVLPWGQMS 80
Cdd:MTH00119  61 SLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMS 140

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241  81 FWGAMVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMISGLVLIHLTFLYETGSNNPLGLPSNCDKIP 160
Cdd:MTH00119 141 FWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIP 220

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241 161 FHPYFSLKDLLGFTIMLLMLTSLALFSPNLLGDPENFTPANPLVTPTHIKPEWYFLFAYAILRSIPNKLGGVLALAASVL 240
Cdd:MTH00119 221 FHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASIL 300

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 694881241 241 VLFLSPLLHKSKQRTMAFRPASQLLFWTLAANLFILTWVGSQPVKHPFIIIGQLASLTYFTIILILLPITSSLENKILN 319
Cdd:MTH00119 301 ILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTILLILFPLLGALENKMLN 379
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-314 5.88e-111

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 327.52  E-value: 5.88e-111
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241   1 SLAFSSVANMCRNVQYGWLIRNIHANGASFFFICIYLHIAQGFYYGSYlyKE----TWNTGVILLLTLMATAFVGYVLPW 76
Cdd:COG1290   69 SEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAY--KKprelNWIIGVLLLLLTMAEAFTGYSLPW 146

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241  77 GQMSFWGAMVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALH-FLLPFMISGLVLIHLTFLYETGSNNPLG---- 151
Cdd:COG1290  147 DQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperk 226

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241 152 LPSNCDKIPFHPYFSLKDLLGFTIMLLMLTSLALFSPNllGDPENFTPANPLVTPTHIKPEWYFLFAYAILRSIP--NKL 229
Cdd:COG1290  227 KTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKL 304

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241 230 GGVLALAASVLVLFLSPLLHKSKQRTMAFRPASQLLFWTLAANLFILTWVGSQPVkhPFIIIGQLASLTYFTIILILLPI 309
Cdd:COG1290  305 GGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTILGANPP--IATLLGSINTVTYFAFFLIVLPI 382


                 ....*
gi 694881241 310 TSSLE 314
Cdd:COG1290  383 LAFIE 387
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-147 3.53e-67

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 208.76  E-value: 3.53e-67
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241   1 SLAFSSVANMCRNVQYGWLIRNIHANGASFFFICIYLHIAQGFYYGSY--LYKETWNTGVILLLTLMATAFVGYVLPWGQ 78
Cdd:cd00284   52 TLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQ 131

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 694881241  79 MSFWGAMVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMISGLVLIHLTFLYETGSN 147
Cdd:cd00284  132 MSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-145 4.68e-58

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 185.28  E-value: 4.68e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241    1 SLAFSSVANMCRNVQYGWLIRNIHANGASFFFICIYLHIAQGFYYG--SYLYKETWNTGVILLLTLMATAFVGYVLPWGQ 78
Cdd:pfam00033  43 TLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQ 122

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 694881241   79 MSFWGAMVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMISGLVLIHLTFLYETG 145
Cdd:pfam00033 123 MSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 180-271 1.60e-10

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 58.66  E-value: 1.60e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241  180 LTSLALFSPNLLGDPenftpANPLVTPTHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLVLFLSPLLHKSKQRTMAFR 259
Cdd:TIGR01156  51 VVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENVNKFQNPFR 125

                          90
                  ....*....|....*
gi 694881241  260 ---PASQLLFWTLAA 271
Cdd:TIGR01156 126 rpvATTVFLFGTVVA 140
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-319 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 637.33  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241   1 SLAFSSVANMCRNVQYGWLIRNIHANGASFFFICIYLHIAQGFYYGSYLYKETWNTGVILLLTLMATAFVGYVLPWGQMS 80
Cdd:MTH00119  61 SLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMS 140

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241  81 FWGAMVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMISGLVLIHLTFLYETGSNNPLGLPSNCDKIP 160
Cdd:MTH00119 141 FWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIP 220

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241 161 FHPYFSLKDLLGFTIMLLMLTSLALFSPNLLGDPENFTPANPLVTPTHIKPEWYFLFAYAILRSIPNKLGGVLALAASVL 240
Cdd:MTH00119 221 FHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASIL 300

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 694881241 241 VLFLSPLLHKSKQRTMAFRPASQLLFWTLAANLFILTWVGSQPVKHPFIIIGQLASLTYFTIILILLPITSSLENKILN 319
Cdd:MTH00119 301 ILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTILLILFPLLGALENKMLN 379
CYTB MTH00131
cytochrome b; Provisional
 1-319 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 581.61  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241   1 SLAFSSVANMCRNVQYGWLIRNIHANGASFFFICIYLHIAQGFYYGSYLYKETWNTGVILLLTLMATAFVGYVLPWGQMS 80
Cdd:MTH00131  60 STAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMS 139

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241  81 FWGAMVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMISGLVLIHLTFLYETGSNNPLGLPSNCDKIP 160
Cdd:MTH00131 140 FWGATVITNLLSAVPYVGNTLVQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKIS 219

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241 161 FHPYFSLKDLLGFTIMLLMLTSLALFSPNLLGDPENFTPANPLVTPTHIKPEWYFLFAYAILRSIPNKLGGVLALAASVL 240
Cdd:MTH00131 220 FHPYFSYKDLLGFAILLLALTSLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSIL 299

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 694881241 241 VLFLSPLLHKSKQRTMAFRPASQLLFWTLAANLFILTWVGSQPVKHPFIIIGQLASLTYFTIILILLPITSSLENKILN 319
Cdd:MTH00131 300 VLMVVPILHTSKQRGLTFRPLTQFLFWTLVADVLILTWIGGMPVEHPFIIIGQVASVLYFSLFLVLMPLAGWLENKALE 378
CYTB MTH00100
cytochrome b; Provisional
 1-318 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 566.19  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241   1 SLAFSSVANMCRNVQYGWLIRNIHANGASFFFICIYLHIAQGFYYGSYLYKETWNTGVILLLTLMATAFVGYVLPWGQMS 80
Cdd:MTH00100  60 TTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMS 139

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241  81 FWGAMVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMISGLVLIHLTFLYETGSNNPLGLPSNCDKIP 160
Cdd:MTH00100 140 FWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIP 219

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241 161 FHPYFSLKDLLGFTIMLLMLTSLALFSPNLLGDPENFTPANPLVTPTHIKPEWYFLFAYAILRSIPNKLGGVLALAASVL 240
Cdd:MTH00100 220 FHPYYTIKDILGLLLLILTLMLLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSIL 299

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 694881241 241 VLFLSPLLHKSKQRTMAFRPASQLLFWTLAANLFILTWVGSQPVKHPFIIIGQLASLTYFTIILILLPITSSLENKIL 318
Cdd:MTH00100 300 ILAIIPLLHTSKQRSMMFRPLSQCLFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFLIILILMPIASLIENNLL 377
CYTB MTH00074
cytochrome b; Provisional
 1-319 0e+00

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 553.91  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241   1 SLAFSSVANMCRNVQYGWLIRNIHANGASFFFICIYLHIAQGFYYGSYLYKETWNTGVILLLTLMATAFVGYVLPWGQMS 80
Cdd:MTH00074  61 SSAFSSVAHICRDVNYGWLMRNIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMS 140

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241  81 FWGAMVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMISGLVLIHLTFLYETGSNNPLGLPSNCDKIP 160
Cdd:MTH00074 141 FWGATVITNLLSAIPYMGDTLVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVP 220

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241 161 FHPYFSLKDLLGFTIMLLMLTSLALFSPNLLGDPENFTPANPLVTPTHIKPEWYFLFAYAILRSIPNKLGGVLALAASVL 240
Cdd:MTH00074 221 FHPYFSYKDLLGFLIMLTALALLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASIL 300

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 694881241 241 VLFLSPLLHKSKQRTMAFRPASQLLFWTLAANLFILTWVGSQPVKHPFIIIGQLASLTYFTIILILLPITSSLENKILN 319
Cdd:MTH00074 301 ILMLIPMLHTSKQRSLMFRPLTQILFWLLVANTLILTWIGGQPVEDPFIEIGQAASILYFLLFIIIIPLTGWLENKLLK 379
CYTB MTH00191
cytochrome b; Provisional
 1-309 0e+00

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 529.10  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241   1 SLAFSSVANMCRNVQYGWLIRNIHANGASFFFICIYLHIAQGFYYGSYLYKETWNTGVILLLTLMATAFVGYVLPWGQMS 80
Cdd:MTH00191  57 SLAFSSVVHICRDVNYGWLLRNIHANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMS 136

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241  81 FWGAMVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMISGLVLIHLTFLYETGSNNPLGLPSNCDKIP 160
Cdd:MTH00191 137 FWGATVITNLLSAIPYIGDDLVQWLWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIP 216

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241 161 FHPYFSLKDLLGFTIMLLMLTSLALFSPNLLGDPENFTPANPLVTPTHIKPEWYFLFAYAILRSIPNKLGGVLALAASVL 240
Cdd:MTH00191 217 FHPYFSYKDILGFFILLFLLLFLVLFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSIL 296

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 694881241 241 VLFLSPLLHKSKQRTMAFRPASQLLFWTLAANLFILTWVGSQPVKHPFIIIGQLASLTYFTIILILLPI 309
Cdd:MTH00191 297 VLFLLPLLHTSKQRSNTFRPLTQVVFWLWVANFILLTWLGGQPVEDPFILLGQISSFLYFFLFLLLFPL 365
CYTB MTH00156
cytochrome b; Provisional
 1-306 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 517.80  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241   1 SLAFSSVANMCRNVQYGWLIRNIHANGASFFFICIYLHIAQGFYYGSYLYKETWNTGVILLLTLMATAFVGYVLPWGQMS 80
Cdd:MTH00156  50 ELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMS 129

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241  81 FWGAMVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMISGLVLIHLTFLYETGSNNPLGLPSNCDKIP 160
Cdd:MTH00156 130 FWGATVITNLLSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIP 209

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241 161 FHPYFSLKDLLGFTIMLLMLTSLALFSPNLLGDPENFTPANPLVTPTHIKPEWYFLFAYAILRSIPNKLGGVLALAASVL 240
Cdd:MTH00156 210 FHPYFTFKDLVGFIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIL 289

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 694881241 241 VLFLSPLLHKSKQRTMAFRPASQLLFWTLAANLFILTWVGSQPVKHPFIIIGQLASLTYFTIILIL 306
Cdd:MTH00156 290 ILMILPFTNKSKFRGNQFYPINKILFWIFVNIVILLTWIGARPVEEPYILTGQILTILYFLYFIIN 355
CYTB MTH00145
cytochrome b; Provisional
 1-318 0e+00

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 507.52  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241   1 SLAFSSVANMCRNVQYGWLIRNIHANGASFFFICIYLHIAQGFYYGSYLYKETWNTGVILLLTLMATAFVGYVLPWGQMS 80
Cdd:MTH00145  61 DLAFSSVIHIMRDVNYGWLLRSLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMS 140

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241  81 FWGAMVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMISGLVLIHLTFLYETGSNNPLGLPSNCDKIP 160
Cdd:MTH00145 141 FWGATVITNLLSAIPYVGKMLVEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVP 220

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241 161 FHPYFSLKDLLGFTIMLLMLTSLALFSPNLLGDPENFTPANPLVTPTHIKPEWYFLFAYAILRSIPNKLGGVLALAASVL 240
Cdd:MTH00145 221 FHPYYTIKDLVGFVVLLFLLVFLVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIV 300

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 694881241 241 VLFLSPLLHKSKQRTMAFRPASQLLFWTLAANLFILTWVGSQPVKHPFIIIGQLASLTYFtIILILLPITSSLENKIL 318
Cdd:MTH00145 301 ILFFLPLLHVGKFRSLSFYPLNQVLFWIFVGNFFILTWIGACPVEEPYETIGQVFTVLYF-LFFLILPLVQKLWDNIL 377
CYTB MTH00034
cytochrome b; Validated
 1-319 5.66e-180

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 501.93  E-value: 5.66e-180
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241   1 SLAFSSVANMCRNVQYGWLIRNIHANGASFFFICIYLHIAQGFYYGSYLYKETWNTGVILLLTLMATAFVGYVLPWGQMS 80
Cdd:MTH00034  60 SLAFSSVSHICRDVNYGWLLRNIHANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMS 139

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241  81 FWGAMVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMISGLVLIHLTFLYETGSNNPLGLPSNCDKIP 160
Cdd:MTH00034 140 FWAATVITNLVSAVPYIGTDIVQWIWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVP 219

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241 161 FHPYFSLKDLLGFTIMLLMLTSLALFSPNLLGDPENFTPANPLVTPTHIKPEWYFLFAYAILRSIPNKLGGVLALAASVL 240
Cdd:MTH00034 220 FHTYFTTKDLVGFLILFAALSSLALLFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAIL 299

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 694881241 241 VLFLSPLLHKSKQRTMAFRPASQLLFWTLAANLFILTWVGSQPVKHPFIIIGQLASLTYFTIILILLPITSSLENKILN 319
Cdd:MTH00034 300 VLFLVPILHTSNNQSSTFRPLSQIAFWLLIATFFILTWIGSQPVEYPFILLGQVASVLYFSLFLFFFPLISYLENKLIF 378
CYTB MTH00016
cytochrome b; Validated
 2-318 7.04e-170

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 476.48  E-value: 7.04e-170
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241   2 LAFSSVANMCRNVQYGWLIRNIHANGASFFFICIYLHIAQGFYYGSYLYKETWNTGVILLLTLMATAFVGYVLPWGQMSF 81
Cdd:MTH00016  62 LAFSSVAHISRDVNYGWLLRNLHANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSF 141

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241  82 WGAMVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMISGLVLIHLTFLYETGSNNPLGLPSNCDKIPF 161
Cdd:MTH00016 142 WGATVITNLLSAIPYIGKMLVQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPF 221

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241 162 HPYFSLKDLLGFTIMLLMLTSLALFSPNLLGDPENFTPANPLVTPTHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLV 241
Cdd:MTH00016 222 HPYYTSKDIVGFIVMLFLLLSVVLLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILI 301

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 694881241 242 LFLSPLLHKSKQRTMAFRPASQLLFWTLAANLFILTWVGSQPVKHPFIIIGQLASLTYFTiILILLPITSSLENKIL 318
Cdd:MTH00016 302 LFFLPFIFKQKFRGLSFYPLNQILFWLLVSNFLLLTWIGGRPVEPPYEFLGQIFTVFYFF-YFMINPLLMKLWDKLL 377
CYTB MTH00053
cytochrome b; Provisional
 1-319 3.66e-150

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 426.43  E-value: 3.66e-150
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241   1 SLAFSSVANMCRNVQYGWLIRNIHANGASFFFICIYLHIAQGFYYGSYLYKETWNTGVILLLTLMATAFVGYVLPWGQMS 80
Cdd:MTH00053  61 NLAFSSVAHITRDVNYGFILRYLHANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMS 140

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241  81 FWGAMVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMISGLVLIHLTFLYETGSNNPLGLPSNCDKIP 160
Cdd:MTH00053 141 FWAATVITNLLSAIPYVGDDIVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIP 220

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241 161 FHPYFSLKDLLGFTIMLLMLTSLALFSPNLLGDPENFTPANPLVTPTHIKPEWYFLFAYAILRSIPNKLGGVLALAASVL 240
Cdd:MTH00053 221 FHYYYVLKDLYGAVILLIILSIIVFLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSIL 300

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 694881241 241 VLFLSPLLHKSKQRTMAFRPASQLLFWTLAANLFILTWVGSQPVKHPFIIIGQLASLTYFTIILILLPITSSLENKILN 319
Cdd:MTH00053 301 VLFFLPYLHKSRFRGLSFRPLSKILFWFLVGDFFLLTWIGGQPVEEPYILIGQIASIFYFAYFLILMPLAGYLENKLLK 379
CYTB MTH00022
cytochrome b; Validated
 1-319 5.67e-150

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 426.04  E-value: 5.67e-150
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241   1 SLAFSSVANMCRNVQYGWLIRNIHANGASFFFICIYLHIAQGFYYGSYLYKETWNTGVILLLTLMATAFVGYVLPWGQMS 80
Cdd:MTH00022  59 SLAFASVGHIMRDVNYGFLLRYLHANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMS 138

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241  81 FWGAMVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMISGLVLIHLTFLYETGSNNPLGLPSNCDKIP 160
Cdd:MTH00022 139 FWGATVITNLLSAIPYVGTDIVQWVWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVS 218

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241 161 FHPYFSLKDLLGFTIMLLMLTSLALFSPNLLGDPENFTPANPLVTPTHIKPEWYFLFAYAILRSIPNKLGGVLALAASVL 240
Cdd:MTH00022 219 FHVYYTSKDWYGIVVLFFLLSFIVYFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSIL 298

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 694881241 241 VLFLSPLLHKSKQRTMAFRPASQLLFWTLAANLFILTWVGSQPVKHPFIIIGQLASLTYFTIILILLPITSSLENKILN 319
Cdd:MTH00022 299 ILFFLPLLHTSWLRGLTFRPLGRMAFWFLIVDFILLTWIGSQVVEEPFILIGQLLSFFYFFYFLVLIPLLGELENQLLF 377
CYTB MTH00224
cytochrome b; Provisional
 2-319 2.75e-144

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 411.62  E-value: 2.75e-144
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241   2 LAFSSVANMCRNVQYGWLIRNIHANGASFFFICIYLHIAQGFYYGSYLYKETWNTGVILLLTLMATAFVGYVLPWGQMSF 81
Cdd:MTH00224  62 MAFSSVAHISRDVNYGWLLRSIHANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSF 141

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241  82 WGAMVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMISGLVLIHLTFLYETGSNNPLGLPSNCDKIPF 161
Cdd:MTH00224 142 WGATVITNLFSAIPYIGKDLVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPF 221

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241 162 HPYFSLKDLLGFTIMLLMLTSLALFSPNLLGDPENFTPANPLVTPTHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLV 241
Cdd:MTH00224 222 HPYYSIKDALGYLIAILLLSLMVLFEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILI 301

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 694881241 242 LFLSPLLHKSKQRTMAFRPASQLLFWTLAANLFILTWVGSQPVKHPFIIIGQLASLTYFTiILILLPITSSLENKILN 319
Cdd:MTH00224 302 LFILPLTSVMNKRSLPFYPLNQLLFWLLVTSWAILTWIGGRPVEDPFEGIGQVFTILYFS-YFIISPAISKLWDDLLN 378
CYTB MTH00033
cytochrome b; Provisional
 1-315 5.87e-116

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 339.99  E-value: 5.87e-116
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241   1 SLAFSSVANMCRNVQYGWLIRNIHANGASFFFICIYLHIAQGFYYGSYLYKETWNTGVILLLTLMATAFVGYVLPWGQMS 80
Cdd:MTH00033  57 SLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMS 136

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241  81 FWGAMVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMISGLVLIHLTFLYETGSNNPLGLPSNCDKIP 160
Cdd:MTH00033 137 FWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTLNRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTA 216

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241 161 FHPYFSLKDLLGFTIMLLMLTSLALFS--PNLLGDPENFTPANPLVTPTHIKPEWYFLFAYAILRSIPNKLGGVLALAAS 238
Cdd:MTH00033 217 FHVYFTIKDILGFLILFGVFVIIGIEPriETLLQDPENFIQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFAS 296

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 694881241 239 VLVLFLSPLLHKSKQRTMAFRPASQLLFWTLAANLFILTWVGSQPV-KHPFIIIGQLASLTYFTIILILLPITSSLEN 315
Cdd:MTH00033 297 ILVLLLMPILDRSKIRSLTFNPTGKFFFWFIVGDFIILTWIGSAPAgADPYVLIGRIATIFYFGYFLVLVPLLGYLSN 374
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-314 5.88e-111

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 327.52  E-value: 5.88e-111
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241   1 SLAFSSVANMCRNVQYGWLIRNIHANGASFFFICIYLHIAQGFYYGSYlyKE----TWNTGVILLLTLMATAFVGYVLPW 76
Cdd:COG1290   69 SEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAY--KKprelNWIIGVLLLLLTMAEAFTGYSLPW 146

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241  77 GQMSFWGAMVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALH-FLLPFMISGLVLIHLTFLYETGSNNPLG---- 151
Cdd:COG1290  147 DQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperk 226

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241 152 LPSNCDKIPFHPYFSLKDLLGFTIMLLMLTSLALFSPNllGDPENFTPANPLVTPTHIKPEWYFLFAYAILRSIP--NKL 229
Cdd:COG1290  227 KTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKL 304

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241 230 GGVLALAASVLVLFLSPLLHKSKQRTMAFRPASQLLFWTLAANLFILTWVGSQPVkhPFIIIGQLASLTYFTIILILLPI 309
Cdd:COG1290  305 GGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTILGANPP--IATLLGSINTVTYFAFFLIVLPI 382


                 ....*
gi 694881241 310 TSSLE 314
Cdd:COG1290  383 LAFIE 387
CYTB MTH00086
cytochrome b; Provisional
 1-307 7.70e-100

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 297.62  E-value: 7.70e-100
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241   1 SLAFSSVANMCRNVQYGWLIRNIHANGASFFFICIYLHIAQGFYYGSYLYKETWNTGVILLLTLMATAFVGYVLPWGQMS 80
Cdd:MTH00086  49 SMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMS 128

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241  81 FWGAMVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMISGLVLIHLTFLYETGSNNPLGLPSNCDKIP 160
Cdd:MTH00086 129 FWAAVVITSLLSVIPIWGPSIVMWIWGGFGVSSATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKIC 208

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241 161 FHPYFSLKDLLGFtIMLLMLTSLALFSPNLLGDPENFTPANPLVTPTHIKPEWYFLFAYAILRSIPNKLGGVLALAASVL 240
Cdd:MTH00086 209 FGPEYWNKDAYNI-IFWLVFIIFSLFYPFNLGDPEMFIEADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMSIV 287

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 694881241 241 VLFLSPLLHKSkqrTMAFRPASQLLFWTLAANLFILTWVGSQPVKHPFIIIGQLASLTYFTIILILL 307
Cdd:MTH00086 288 VFYFFIFVNNY---TSCLNKLNKFLVFSFIVVNVILSWLGQCLVEYPFLFLSQIFSFIYFFLILLML 351
CYTB MTH00046
cytochrome b; Validated
 1-297 3.47e-75

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 234.88  E-value: 3.47e-75
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241   1 SLAFSSVANMCRNVQYGWLIRNIHANGASFFFICIYLHIAQGFYYGSYLYKETWNTGVILLLTLMATAFVGYVLPWGQMS 80
Cdd:MTH00046  51 LCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLFILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMS 130

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241  81 FWGAMVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMISGLVLIHLTFLYETGSNNPLGLPSN-CDKI 159
Cdd:MTH00046 131 YWAATVLTSIVDSVPIVGSLVYKYIVGGFSVTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSSNGySDVV 210

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241 160 PFHPYFSLKDLLGFTIMLLMLTSLALFSPNLLGDPENFTPANPLVTPTHIKPEWYFLFAYAILRSIPNKLGGvLALAASV 239
Cdd:MTH00046 211 YFHSYFTVKDLFLFMVVCSLLVFWLFVSPDLVLDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRSINSKIGG-LVLVLSF 289

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 694881241 240 LVLFLSPLLHKSKqrtmAFRPASQLLFWTLAANLFILTWVGSQPVKHPFIIIGQLASL 297
Cdd:MTH00046 290 LFFLWVPTFNGSS----VYSVWRQVNFWLIVSLFFSLSYLGGCHPEYPYLLISQLFSV 343
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-147 3.53e-67

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 208.76  E-value: 3.53e-67
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241   1 SLAFSSVANMCRNVQYGWLIRNIHANGASFFFICIYLHIAQGFYYGSY--LYKETWNTGVILLLTLMATAFVGYVLPWGQ 78
Cdd:cd00284   52 TLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQ 131

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 694881241  79 MSFWGAMVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMISGLVLIHLTFLYETGSN 147
Cdd:cd00284  132 MSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-145 4.68e-58

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 185.28  E-value: 4.68e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241    1 SLAFSSVANMCRNVQYGWLIRNIHANGASFFFICIYLHIAQGFYYG--SYLYKETWNTGVILLLTLMATAFVGYVLPWGQ 78
Cdd:pfam00033  43 TLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQ 122

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 694881241   79 MSFWGAMVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMISGLVLIHLTFLYETG 145
Cdd:pfam00033 123 MSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 148-295 8.86e-54

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 172.83  E-value: 8.86e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241 148 NPLGLPSNCDKIPFHPYFSLKDLLGFTIMLLMLTSLALFSPNLLGDPENFTPANPLVTPTHIKPEWYFLFAYAILRSIPN 227
Cdd:cd00290    1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 694881241 228 KLGGVLALAASVLVLFLSPLLHKSKQRTMaFRPASQLLFWTLAANLFILTWVGSQPVKHPFIIIGQLA 295
Cdd:cd00290   81 KLLGVLAMAASILSLFLVPFLENSNKRSQ-FRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQLF 147
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
199-299 1.84e-45

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 149.55  E-value: 1.84e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241  199 PANPLVTPTHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLVLFLSPLLHKSKQRTMAFRPASQLLFWTLAANLFILTW 278
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90       100
                  ....*....|....*....|.
gi 694881241  279 VGSQPVKHPFIIIGQLASLTY 299
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
29-194 2.75e-45

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 151.63  E-value: 2.75e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241   29 SFFFICIYLHIAQGFYYGSYLYKE--TWNTGVILLLTLMATAFVGYVLPWGQMSFWGAMVITNLFSAIPYIGQTLVEWAW 106
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241  107 GGFSVDNPTLTRFFALHF-LLPFMISGLVLIHLTFLYETGSNNPLGLPSNCDKIPFHPYFSLKDLLGFTIMLLMLTSLAL 185
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 694881241  186 FSPNLLGDP 194
Cdd:pfam13631 161 INPIWLGGP 169
PRK03735 PRK03735
cytochrome b6; Provisional
 3-150 4.75e-28

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 108.26  E-value: 4.75e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241   3 AFSSVANMCRNVQYGWLIRNIHANGASFFFICIYLHIAQGFYYGSYLYKE--TWNTGVILLLTLMATAFVGYVLPWGQMS 80
Cdd:PRK03735  73 AYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRelNWVVGVLIFFVTVGLGFTGYLLPWDQKA 152

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 694881241  81 FWGAMVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALH-FLLPFMISGLVLIHLTFLYETGSNNPL 150
Cdd:PRK03735 153 YFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWALAVLMLAHFLMIRKQGISGPL 223
petB CHL00070
cytochrome b6
 3-150 3.64e-26

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 103.26  E-value: 3.64e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241   3 AFSSVANMCRNVQYGWLIRNIHANGASFFFICIYLHIAQGFYYGSYLYKE--TWNTGVILLLTLMATAFVGYVLPWGQMS 80
Cdd:CHL00070  65 AFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRelTWVTGVVLAVLTVSFGVTGYSLPWDQIG 144

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 694881241  81 FWGAMVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALH-FLLPFMISGLVLIHLTFLYETGSNNPL 150
Cdd:CHL00070 145 YWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSLHtFVLPLLTAVFMLMHFLMIRKQGISGPL 215
petD CHL00058
cytochrome b6/f complex subunit IV
 180-266 2.67e-11

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 60.79  E-value: 2.67e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241 180 LTSLALFSPNLLGDPenftpANPLVTPTHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLVLFLSPLLHK-SKQRTMAF 258
Cdd:CHL00058  51 NVGLAVLEPSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLENvNKFQNPFR 125


                 ....*...
gi 694881241 259 RPASQLLF 266
Cdd:CHL00058 126 RPVATTVF 133
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 179-248 4.64e-11

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 60.19  E-value: 4.64e-11
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241 179 MLTSLALFSPNLLGDPenftpANPLVTPTHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLVLFLSPLL 248
Cdd:COG5679   51 LCIGLAVLDPAMMGEP-----ADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPFI 115
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 180-271 1.60e-10

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 58.66  E-value: 1.60e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241  180 LTSLALFSPNLLGDPenftpANPLVTPTHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLVLFLSPLLHKSKQRTMAFR 259
Cdd:TIGR01156  51 VVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENVNKFQNPFR 125

                          90
                  ....*....|....*
gi 694881241  260 ---PASQLLFWTLAA 271
Cdd:TIGR01156 126 rpvATTVFLFGTVVA 140
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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