|
Name |
Accession |
Description |
Interval |
E-value |
| CYTB |
MTH00119 |
cytochrome b; Provisional |
1-319 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 214425 [Multi-domain] Cd Length: 380 Bit Score: 637.33 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241 1 SLAFSSVANMCRNVQYGWLIRNIHANGASFFFICIYLHIAQGFYYGSYLYKETWNTGVILLLTLMATAFVGYVLPWGQMS 80
Cdd:MTH00119 61 SLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMS 140
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241 81 FWGAMVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMISGLVLIHLTFLYETGSNNPLGLPSNCDKIP 160
Cdd:MTH00119 141 FWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIP 220
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241 161 FHPYFSLKDLLGFTIMLLMLTSLALFSPNLLGDPENFTPANPLVTPTHIKPEWYFLFAYAILRSIPNKLGGVLALAASVL 240
Cdd:MTH00119 221 FHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASIL 300
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 694881241 241 VLFLSPLLHKSKQRTMAFRPASQLLFWTLAANLFILTWVGSQPVKHPFIIIGQLASLTYFTIILILLPITSSLENKILN 319
Cdd:MTH00119 301 ILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTILLILFPLLGALENKMLN 379
|
|
| QcrB/PetB |
COG1290 |
Cytochrome b subunit of the bc complex [Energy production and conversion]; |
1-314 |
5.88e-111 |
|
Cytochrome b subunit of the bc complex [Energy production and conversion];
Pssm-ID: 440901 [Multi-domain] Cd Length: 393 Bit Score: 327.52 E-value: 5.88e-111
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241 1 SLAFSSVANMCRNVQYGWLIRNIHANGASFFFICIYLHIAQGFYYGSYlyKE----TWNTGVILLLTLMATAFVGYVLPW 76
Cdd:COG1290 69 SEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAY--KKprelNWIIGVLLLLLTMAEAFTGYSLPW 146
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241 77 GQMSFWGAMVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALH-FLLPFMISGLVLIHLTFLYETGSNNPLG---- 151
Cdd:COG1290 147 DQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperk 226
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241 152 LPSNCDKIPFHPYFSLKDLLGFTIMLLMLTSLALFSPNllGDPENFTPANPLVTPTHIKPEWYFLFAYAILRSIP--NKL 229
Cdd:COG1290 227 KTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKL 304
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241 230 GGVLALAASVLVLFLSPLLHKSKQRTMAFRPASQLLFWTLAANLFILTWVGSQPVkhPFIIIGQLASLTYFTIILILLPI 309
Cdd:COG1290 305 GGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTILGANPP--IATLLGSINTVTYFAFFLIVLPI 382
|
....*
gi 694881241 310 TSSLE 314
Cdd:COG1290 383 LAFIE 387
|
|
| Cytochrome_b_N |
cd00284 |
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
1-147 |
3.53e-67 |
|
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.
Pssm-ID: 238176 Cd Length: 200 Bit Score: 208.76 E-value: 3.53e-67
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241 1 SLAFSSVANMCRNVQYGWLIRNIHANGASFFFICIYLHIAQGFYYGSY--LYKETWNTGVILLLTLMATAFVGYVLPWGQ 78
Cdd:cd00284 52 TLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQ 131
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 694881241 79 MSFWGAMVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMISGLVLIHLTFLYETGSN 147
Cdd:cd00284 132 MSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
|
|
| Cytochrome_B |
pfam00033 |
Cytochrome b/b6/petB; |
1-145 |
4.68e-58 |
|
Cytochrome b/b6/petB;
Pssm-ID: 306530 Cd Length: 189 Bit Score: 185.28 E-value: 4.68e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241 1 SLAFSSVANMCRNVQYGWLIRNIHANGASFFFICIYLHIAQGFYYG--SYLYKETWNTGVILLLTLMATAFVGYVLPWGQ 78
Cdd:pfam00033 43 TLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQ 122
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 694881241 79 MSFWGAMVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMISGLVLIHLTFLYETG 145
Cdd:pfam00033 123 MSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILMLLHLLFLHETG 189
|
|
| cytb6/f_IV |
TIGR01156 |
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ... |
180-271 |
1.60e-10 |
|
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]
Pssm-ID: 130224 [Multi-domain] Cd Length: 159 Bit Score: 58.66 E-value: 1.60e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241 180 LTSLALFSPNLLGDPenftpANPLVTPTHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLVLFLSPLLHKSKQRTMAFR 259
Cdd:TIGR01156 51 VVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENVNKFQNPFR 125
|
90
....*....|....*
gi 694881241 260 ---PASQLLFWTLAA 271
Cdd:TIGR01156 126 rpvATTVFLFGTVVA 140
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| CYTB |
MTH00119 |
cytochrome b; Provisional |
1-319 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 214425 [Multi-domain] Cd Length: 380 Bit Score: 637.33 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241 1 SLAFSSVANMCRNVQYGWLIRNIHANGASFFFICIYLHIAQGFYYGSYLYKETWNTGVILLLTLMATAFVGYVLPWGQMS 80
Cdd:MTH00119 61 SLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMS 140
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241 81 FWGAMVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMISGLVLIHLTFLYETGSNNPLGLPSNCDKIP 160
Cdd:MTH00119 141 FWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIP 220
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241 161 FHPYFSLKDLLGFTIMLLMLTSLALFSPNLLGDPENFTPANPLVTPTHIKPEWYFLFAYAILRSIPNKLGGVLALAASVL 240
Cdd:MTH00119 221 FHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASIL 300
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 694881241 241 VLFLSPLLHKSKQRTMAFRPASQLLFWTLAANLFILTWVGSQPVKHPFIIIGQLASLTYFTIILILLPITSSLENKILN 319
Cdd:MTH00119 301 ILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTILLILFPLLGALENKMLN 379
|
|
| CYTB |
MTH00131 |
cytochrome b; Provisional |
1-319 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 177189 [Multi-domain] Cd Length: 380 Bit Score: 581.61 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241 1 SLAFSSVANMCRNVQYGWLIRNIHANGASFFFICIYLHIAQGFYYGSYLYKETWNTGVILLLTLMATAFVGYVLPWGQMS 80
Cdd:MTH00131 60 STAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMS 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241 81 FWGAMVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMISGLVLIHLTFLYETGSNNPLGLPSNCDKIP 160
Cdd:MTH00131 140 FWGATVITNLLSAVPYVGNTLVQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKIS 219
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241 161 FHPYFSLKDLLGFTIMLLMLTSLALFSPNLLGDPENFTPANPLVTPTHIKPEWYFLFAYAILRSIPNKLGGVLALAASVL 240
Cdd:MTH00131 220 FHPYFSYKDLLGFAILLLALTSLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSIL 299
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 694881241 241 VLFLSPLLHKSKQRTMAFRPASQLLFWTLAANLFILTWVGSQPVKHPFIIIGQLASLTYFTIILILLPITSSLENKILN 319
Cdd:MTH00131 300 VLMVVPILHTSKQRGLTFRPLTQFLFWTLVADVLILTWIGGMPVEHPFIIIGQVASVLYFSLFLVLMPLAGWLENKALE 378
|
|
| CYTB |
MTH00100 |
cytochrome b; Provisional |
1-318 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 177162 [Multi-domain] Cd Length: 379 Bit Score: 566.19 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241 1 SLAFSSVANMCRNVQYGWLIRNIHANGASFFFICIYLHIAQGFYYGSYLYKETWNTGVILLLTLMATAFVGYVLPWGQMS 80
Cdd:MTH00100 60 TTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMS 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241 81 FWGAMVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMISGLVLIHLTFLYETGSNNPLGLPSNCDKIP 160
Cdd:MTH00100 140 FWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIP 219
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241 161 FHPYFSLKDLLGFTIMLLMLTSLALFSPNLLGDPENFTPANPLVTPTHIKPEWYFLFAYAILRSIPNKLGGVLALAASVL 240
Cdd:MTH00100 220 FHPYYTIKDILGLLLLILTLMLLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSIL 299
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 694881241 241 VLFLSPLLHKSKQRTMAFRPASQLLFWTLAANLFILTWVGSQPVKHPFIIIGQLASLTYFTIILILLPITSSLENKIL 318
Cdd:MTH00100 300 ILAIIPLLHTSKQRSMMFRPLSQCLFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFLIILILMPIASLIENNLL 377
|
|
| CYTB |
MTH00074 |
cytochrome b; Provisional |
1-319 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 177145 [Multi-domain] Cd Length: 380 Bit Score: 553.91 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241 1 SLAFSSVANMCRNVQYGWLIRNIHANGASFFFICIYLHIAQGFYYGSYLYKETWNTGVILLLTLMATAFVGYVLPWGQMS 80
Cdd:MTH00074 61 SSAFSSVAHICRDVNYGWLMRNIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMS 140
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241 81 FWGAMVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMISGLVLIHLTFLYETGSNNPLGLPSNCDKIP 160
Cdd:MTH00074 141 FWGATVITNLLSAIPYMGDTLVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVP 220
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241 161 FHPYFSLKDLLGFTIMLLMLTSLALFSPNLLGDPENFTPANPLVTPTHIKPEWYFLFAYAILRSIPNKLGGVLALAASVL 240
Cdd:MTH00074 221 FHPYFSYKDLLGFLIMLTALALLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASIL 300
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 694881241 241 VLFLSPLLHKSKQRTMAFRPASQLLFWTLAANLFILTWVGSQPVKHPFIIIGQLASLTYFTIILILLPITSSLENKILN 319
Cdd:MTH00074 301 ILMLIPMLHTSKQRSLMFRPLTQILFWLLVANTLILTWIGGQPVEDPFIEIGQAASILYFLLFIIIIPLTGWLENKLLK 379
|
|
| CYTB |
MTH00191 |
cytochrome b; Provisional |
1-309 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 177239 [Multi-domain] Cd Length: 365 Bit Score: 529.10 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241 1 SLAFSSVANMCRNVQYGWLIRNIHANGASFFFICIYLHIAQGFYYGSYLYKETWNTGVILLLTLMATAFVGYVLPWGQMS 80
Cdd:MTH00191 57 SLAFSSVVHICRDVNYGWLLRNIHANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMS 136
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241 81 FWGAMVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMISGLVLIHLTFLYETGSNNPLGLPSNCDKIP 160
Cdd:MTH00191 137 FWGATVITNLLSAIPYIGDDLVQWLWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIP 216
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241 161 FHPYFSLKDLLGFTIMLLMLTSLALFSPNLLGDPENFTPANPLVTPTHIKPEWYFLFAYAILRSIPNKLGGVLALAASVL 240
Cdd:MTH00191 217 FHPYFSYKDILGFFILLFLLLFLVLFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSIL 296
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 694881241 241 VLFLSPLLHKSKQRTMAFRPASQLLFWTLAANLFILTWVGSQPVKHPFIIIGQLASLTYFTIILILLPI 309
Cdd:MTH00191 297 VLFLLPLLHTSKQRSNTFRPLTQVVFWLWVANFILLTWLGGQPVEDPFILLGQISSFLYFFLFLLLFPL 365
|
|
| CYTB |
MTH00156 |
cytochrome b; Provisional |
1-306 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 214440 [Multi-domain] Cd Length: 356 Bit Score: 517.80 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241 1 SLAFSSVANMCRNVQYGWLIRNIHANGASFFFICIYLHIAQGFYYGSYLYKETWNTGVILLLTLMATAFVGYVLPWGQMS 80
Cdd:MTH00156 50 ELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMS 129
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241 81 FWGAMVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMISGLVLIHLTFLYETGSNNPLGLPSNCDKIP 160
Cdd:MTH00156 130 FWGATVITNLLSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIP 209
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241 161 FHPYFSLKDLLGFTIMLLMLTSLALFSPNLLGDPENFTPANPLVTPTHIKPEWYFLFAYAILRSIPNKLGGVLALAASVL 240
Cdd:MTH00156 210 FHPYFTFKDLVGFIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIL 289
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 694881241 241 VLFLSPLLHKSKQRTMAFRPASQLLFWTLAANLFILTWVGSQPVKHPFIIIGQLASLTYFTIILIL 306
Cdd:MTH00156 290 ILMILPFTNKSKFRGNQFYPINKILFWIFVNIVILLTWIGARPVEEPYILTGQILTILYFLYFIIN 355
|
|
| CYTB |
MTH00145 |
cytochrome b; Provisional |
1-318 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 177203 [Multi-domain] Cd Length: 379 Bit Score: 507.52 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241 1 SLAFSSVANMCRNVQYGWLIRNIHANGASFFFICIYLHIAQGFYYGSYLYKETWNTGVILLLTLMATAFVGYVLPWGQMS 80
Cdd:MTH00145 61 DLAFSSVIHIMRDVNYGWLLRSLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMS 140
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241 81 FWGAMVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMISGLVLIHLTFLYETGSNNPLGLPSNCDKIP 160
Cdd:MTH00145 141 FWGATVITNLLSAIPYVGKMLVEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVP 220
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241 161 FHPYFSLKDLLGFTIMLLMLTSLALFSPNLLGDPENFTPANPLVTPTHIKPEWYFLFAYAILRSIPNKLGGVLALAASVL 240
Cdd:MTH00145 221 FHPYYTIKDLVGFVVLLFLLVFLVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIV 300
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 694881241 241 VLFLSPLLHKSKQRTMAFRPASQLLFWTLAANLFILTWVGSQPVKHPFIIIGQLASLTYFtIILILLPITSSLENKIL 318
Cdd:MTH00145 301 ILFFLPLLHVGKFRSLSFYPLNQVLFWIFVGNFFILTWIGACPVEEPYETIGQVFTVLYF-LFFLILPLVQKLWDNIL 377
|
|
| CYTB |
MTH00034 |
cytochrome b; Validated |
1-319 |
5.66e-180 |
|
cytochrome b; Validated
Pssm-ID: 177109 [Multi-domain] Cd Length: 379 Bit Score: 501.93 E-value: 5.66e-180
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241 1 SLAFSSVANMCRNVQYGWLIRNIHANGASFFFICIYLHIAQGFYYGSYLYKETWNTGVILLLTLMATAFVGYVLPWGQMS 80
Cdd:MTH00034 60 SLAFSSVSHICRDVNYGWLLRNIHANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMS 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241 81 FWGAMVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMISGLVLIHLTFLYETGSNNPLGLPSNCDKIP 160
Cdd:MTH00034 140 FWAATVITNLVSAVPYIGTDIVQWIWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVP 219
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241 161 FHPYFSLKDLLGFTIMLLMLTSLALFSPNLLGDPENFTPANPLVTPTHIKPEWYFLFAYAILRSIPNKLGGVLALAASVL 240
Cdd:MTH00034 220 FHTYFTTKDLVGFLILFAALSSLALLFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAIL 299
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 694881241 241 VLFLSPLLHKSKQRTMAFRPASQLLFWTLAANLFILTWVGSQPVKHPFIIIGQLASLTYFTIILILLPITSSLENKILN 319
Cdd:MTH00034 300 VLFLVPILHTSNNQSSTFRPLSQIAFWLLIATFFILTWIGSQPVEYPFILLGQVASVLYFSLFLFFFPLISYLENKLIF 378
|
|
| CYTB |
MTH00016 |
cytochrome b; Validated |
2-318 |
7.04e-170 |
|
cytochrome b; Validated
Pssm-ID: 177102 [Multi-domain] Cd Length: 378 Bit Score: 476.48 E-value: 7.04e-170
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241 2 LAFSSVANMCRNVQYGWLIRNIHANGASFFFICIYLHIAQGFYYGSYLYKETWNTGVILLLTLMATAFVGYVLPWGQMSF 81
Cdd:MTH00016 62 LAFSSVAHISRDVNYGWLLRNLHANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSF 141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241 82 WGAMVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMISGLVLIHLTFLYETGSNNPLGLPSNCDKIPF 161
Cdd:MTH00016 142 WGATVITNLLSAIPYIGKMLVQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPF 221
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241 162 HPYFSLKDLLGFTIMLLMLTSLALFSPNLLGDPENFTPANPLVTPTHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLV 241
Cdd:MTH00016 222 HPYYTSKDIVGFIVMLFLLLSVVLLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILI 301
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 694881241 242 LFLSPLLHKSKQRTMAFRPASQLLFWTLAANLFILTWVGSQPVKHPFIIIGQLASLTYFTiILILLPITSSLENKIL 318
Cdd:MTH00016 302 LFFLPFIFKQKFRGLSFYPLNQILFWLLVSNFLLLTWIGGRPVEPPYEFLGQIFTVFYFF-YFMINPLLMKLWDKLL 377
|
|
| CYTB |
MTH00053 |
cytochrome b; Provisional |
1-319 |
3.66e-150 |
|
cytochrome b; Provisional
Pssm-ID: 164624 [Multi-domain] Cd Length: 381 Bit Score: 426.43 E-value: 3.66e-150
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241 1 SLAFSSVANMCRNVQYGWLIRNIHANGASFFFICIYLHIAQGFYYGSYLYKETWNTGVILLLTLMATAFVGYVLPWGQMS 80
Cdd:MTH00053 61 NLAFSSVAHITRDVNYGFILRYLHANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMS 140
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241 81 FWGAMVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMISGLVLIHLTFLYETGSNNPLGLPSNCDKIP 160
Cdd:MTH00053 141 FWAATVITNLLSAIPYVGDDIVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIP 220
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241 161 FHPYFSLKDLLGFTIMLLMLTSLALFSPNLLGDPENFTPANPLVTPTHIKPEWYFLFAYAILRSIPNKLGGVLALAASVL 240
Cdd:MTH00053 221 FHYYYVLKDLYGAVILLIILSIIVFLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSIL 300
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 694881241 241 VLFLSPLLHKSKQRTMAFRPASQLLFWTLAANLFILTWVGSQPVKHPFIIIGQLASLTYFTIILILLPITSSLENKILN 319
Cdd:MTH00053 301 VLFFLPYLHKSRFRGLSFRPLSKILFWFLVGDFFLLTWIGGQPVEEPYILIGQIASIFYFAYFLILMPLAGYLENKLLK 379
|
|
| CYTB |
MTH00022 |
cytochrome b; Validated |
1-319 |
5.67e-150 |
|
cytochrome b; Validated
Pssm-ID: 164595 [Multi-domain] Cd Length: 379 Bit Score: 426.04 E-value: 5.67e-150
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241 1 SLAFSSVANMCRNVQYGWLIRNIHANGASFFFICIYLHIAQGFYYGSYLYKETWNTGVILLLTLMATAFVGYVLPWGQMS 80
Cdd:MTH00022 59 SLAFASVGHIMRDVNYGFLLRYLHANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMS 138
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241 81 FWGAMVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMISGLVLIHLTFLYETGSNNPLGLPSNCDKIP 160
Cdd:MTH00022 139 FWGATVITNLLSAIPYVGTDIVQWVWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVS 218
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241 161 FHPYFSLKDLLGFTIMLLMLTSLALFSPNLLGDPENFTPANPLVTPTHIKPEWYFLFAYAILRSIPNKLGGVLALAASVL 240
Cdd:MTH00022 219 FHVYYTSKDWYGIVVLFFLLSFIVYFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSIL 298
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 694881241 241 VLFLSPLLHKSKQRTMAFRPASQLLFWTLAANLFILTWVGSQPVKHPFIIIGQLASLTYFTIILILLPITSSLENKILN 319
Cdd:MTH00022 299 ILFFLPLLHTSWLRGLTFRPLGRMAFWFLIVDFILLTWIGSQVVEEPFILIGQLLSFFYFFYFLVLIPLLGELENQLLF 377
|
|
| CYTB |
MTH00224 |
cytochrome b; Provisional |
2-319 |
2.75e-144 |
|
cytochrome b; Provisional
Pssm-ID: 164767 [Multi-domain] Cd Length: 379 Bit Score: 411.62 E-value: 2.75e-144
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241 2 LAFSSVANMCRNVQYGWLIRNIHANGASFFFICIYLHIAQGFYYGSYLYKETWNTGVILLLTLMATAFVGYVLPWGQMSF 81
Cdd:MTH00224 62 MAFSSVAHISRDVNYGWLLRSIHANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSF 141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241 82 WGAMVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMISGLVLIHLTFLYETGSNNPLGLPSNCDKIPF 161
Cdd:MTH00224 142 WGATVITNLFSAIPYIGKDLVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPF 221
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241 162 HPYFSLKDLLGFTIMLLMLTSLALFSPNLLGDPENFTPANPLVTPTHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLV 241
Cdd:MTH00224 222 HPYYSIKDALGYLIAILLLSLMVLFEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILI 301
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 694881241 242 LFLSPLLHKSKQRTMAFRPASQLLFWTLAANLFILTWVGSQPVKHPFIIIGQLASLTYFTiILILLPITSSLENKILN 319
Cdd:MTH00224 302 LFILPLTSVMNKRSLPFYPLNQLLFWLLVTSWAILTWIGGRPVEDPFEGIGQVFTILYFS-YFIISPAISKLWDDLLN 378
|
|
| CYTB |
MTH00033 |
cytochrome b; Provisional |
1-315 |
5.87e-116 |
|
cytochrome b; Provisional
Pssm-ID: 133672 [Multi-domain] Cd Length: 383 Bit Score: 339.99 E-value: 5.87e-116
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241 1 SLAFSSVANMCRNVQYGWLIRNIHANGASFFFICIYLHIAQGFYYGSYLYKETWNTGVILLLTLMATAFVGYVLPWGQMS 80
Cdd:MTH00033 57 SLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMS 136
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241 81 FWGAMVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMISGLVLIHLTFLYETGSNNPLGLPSNCDKIP 160
Cdd:MTH00033 137 FWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTLNRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTA 216
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241 161 FHPYFSLKDLLGFTIMLLMLTSLALFS--PNLLGDPENFTPANPLVTPTHIKPEWYFLFAYAILRSIPNKLGGVLALAAS 238
Cdd:MTH00033 217 FHVYFTIKDILGFLILFGVFVIIGIEPriETLLQDPENFIQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFAS 296
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 694881241 239 VLVLFLSPLLHKSKQRTMAFRPASQLLFWTLAANLFILTWVGSQPV-KHPFIIIGQLASLTYFTIILILLPITSSLEN 315
Cdd:MTH00033 297 ILVLLLMPILDRSKIRSLTFNPTGKFFFWFIVGDFIILTWIGSAPAgADPYVLIGRIATIFYFGYFLVLVPLLGYLSN 374
|
|
| QcrB/PetB |
COG1290 |
Cytochrome b subunit of the bc complex [Energy production and conversion]; |
1-314 |
5.88e-111 |
|
Cytochrome b subunit of the bc complex [Energy production and conversion];
Pssm-ID: 440901 [Multi-domain] Cd Length: 393 Bit Score: 327.52 E-value: 5.88e-111
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241 1 SLAFSSVANMCRNVQYGWLIRNIHANGASFFFICIYLHIAQGFYYGSYlyKE----TWNTGVILLLTLMATAFVGYVLPW 76
Cdd:COG1290 69 SEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAY--KKprelNWIIGVLLLLLTMAEAFTGYSLPW 146
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241 77 GQMSFWGAMVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALH-FLLPFMISGLVLIHLTFLYETGSNNPLG---- 151
Cdd:COG1290 147 DQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperk 226
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241 152 LPSNCDKIPFHPYFSLKDLLGFTIMLLMLTSLALFSPNllGDPENFTPANPLVTPTHIKPEWYFLFAYAILRSIP--NKL 229
Cdd:COG1290 227 KTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKL 304
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241 230 GGVLALAASVLVLFLSPLLHKSKQRTMAFRPASQLLFWTLAANLFILTWVGSQPVkhPFIIIGQLASLTYFTIILILLPI 309
Cdd:COG1290 305 GGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTILGANPP--IATLLGSINTVTYFAFFLIVLPI 382
|
....*
gi 694881241 310 TSSLE 314
Cdd:COG1290 383 LAFIE 387
|
|
| CYTB |
MTH00086 |
cytochrome b; Provisional |
1-307 |
7.70e-100 |
|
cytochrome b; Provisional
Pssm-ID: 177151 [Multi-domain] Cd Length: 355 Bit Score: 297.62 E-value: 7.70e-100
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241 1 SLAFSSVANMCRNVQYGWLIRNIHANGASFFFICIYLHIAQGFYYGSYLYKETWNTGVILLLTLMATAFVGYVLPWGQMS 80
Cdd:MTH00086 49 SMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMS 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241 81 FWGAMVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMISGLVLIHLTFLYETGSNNPLGLPSNCDKIP 160
Cdd:MTH00086 129 FWAAVVITSLLSVIPIWGPSIVMWIWGGFGVSSATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKIC 208
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241 161 FHPYFSLKDLLGFtIMLLMLTSLALFSPNLLGDPENFTPANPLVTPTHIKPEWYFLFAYAILRSIPNKLGGVLALAASVL 240
Cdd:MTH00086 209 FGPEYWNKDAYNI-IFWLVFIIFSLFYPFNLGDPEMFIEADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMSIV 287
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 694881241 241 VLFLSPLLHKSkqrTMAFRPASQLLFWTLAANLFILTWVGSQPVKHPFIIIGQLASLTYFTIILILL 307
Cdd:MTH00086 288 VFYFFIFVNNY---TSCLNKLNKFLVFSFIVVNVILSWLGQCLVEYPFLFLSQIFSFIYFFLILLML 351
|
|
| CYTB |
MTH00046 |
cytochrome b; Validated |
1-297 |
3.47e-75 |
|
cytochrome b; Validated
Pssm-ID: 177121 [Multi-domain] Cd Length: 355 Bit Score: 234.88 E-value: 3.47e-75
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241 1 SLAFSSVANMCRNVQYGWLIRNIHANGASFFFICIYLHIAQGFYYGSYLYKETWNTGVILLLTLMATAFVGYVLPWGQMS 80
Cdd:MTH00046 51 LCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLFILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMS 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241 81 FWGAMVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMISGLVLIHLTFLYETGSNNPLGLPSN-CDKI 159
Cdd:MTH00046 131 YWAATVLTSIVDSVPIVGSLVYKYIVGGFSVTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSSNGySDVV 210
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241 160 PFHPYFSLKDLLGFTIMLLMLTSLALFSPNLLGDPENFTPANPLVTPTHIKPEWYFLFAYAILRSIPNKLGGvLALAASV 239
Cdd:MTH00046 211 YFHSYFTVKDLFLFMVVCSLLVFWLFVSPDLVLDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRSINSKIGG-LVLVLSF 289
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 694881241 240 LVLFLSPLLHKSKqrtmAFRPASQLLFWTLAANLFILTWVGSQPVKHPFIIIGQLASL 297
Cdd:MTH00046 290 LFFLWVPTFNGSS----VYSVWRQVNFWLIVSLFFSLSYLGGCHPEYPYLLISQLFSV 343
|
|
| Cytochrome_b_N |
cd00284 |
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
1-147 |
3.53e-67 |
|
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.
Pssm-ID: 238176 Cd Length: 200 Bit Score: 208.76 E-value: 3.53e-67
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241 1 SLAFSSVANMCRNVQYGWLIRNIHANGASFFFICIYLHIAQGFYYGSY--LYKETWNTGVILLLTLMATAFVGYVLPWGQ 78
Cdd:cd00284 52 TLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQ 131
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 694881241 79 MSFWGAMVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMISGLVLIHLTFLYETGSN 147
Cdd:cd00284 132 MSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
|
|
| Cytochrome_B |
pfam00033 |
Cytochrome b/b6/petB; |
1-145 |
4.68e-58 |
|
Cytochrome b/b6/petB;
Pssm-ID: 306530 Cd Length: 189 Bit Score: 185.28 E-value: 4.68e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241 1 SLAFSSVANMCRNVQYGWLIRNIHANGASFFFICIYLHIAQGFYYG--SYLYKETWNTGVILLLTLMATAFVGYVLPWGQ 78
Cdd:pfam00033 43 TLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQ 122
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 694881241 79 MSFWGAMVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMISGLVLIHLTFLYETG 145
Cdd:pfam00033 123 MSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILMLLHLLFLHETG 189
|
|
| cytochrome_b_C |
cd00290 |
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
148-295 |
8.86e-54 |
|
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.
Pssm-ID: 238179 [Multi-domain] Cd Length: 147 Bit Score: 172.83 E-value: 8.86e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241 148 NPLGLPSNCDKIPFHPYFSLKDLLGFTIMLLMLTSLALFSPNLLGDPENFTPANPLVTPTHIKPEWYFLFAYAILRSIPN 227
Cdd:cd00290 1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 694881241 228 KLGGVLALAASVLVLFLSPLLHKSKQRTMaFRPASQLLFWTLAANLFILTWVGSQPVKHPFIIIGQLA 295
Cdd:cd00290 81 KLLGVLAMAASILSLFLVPFLENSNKRSQ-FRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQLF 147
|
|
| Cytochrom_B_C |
pfam00032 |
Cytochrome b(C-terminal)/b6/petD; |
199-299 |
1.84e-45 |
|
Cytochrome b(C-terminal)/b6/petD;
Pssm-ID: 459640 [Multi-domain] Cd Length: 101 Bit Score: 149.55 E-value: 1.84e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241 199 PANPLVTPTHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLVLFLSPLLHKSKQRTMAFRPASQLLFWTLAANLFILTW 278
Cdd:pfam00032 1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80
|
90 100
....*....|....*....|.
gi 694881241 279 VGSQPVKHPFIIIGQLASLTY 299
Cdd:pfam00032 81 LGKQPPTGPYTLLGQIATVYY 101
|
|
| Cytochrom_B_N_2 |
pfam13631 |
Cytochrome b(N-terminal)/b6/petB; |
29-194 |
2.75e-45 |
|
Cytochrome b(N-terminal)/b6/petB;
Pssm-ID: 433364 Cd Length: 169 Bit Score: 151.63 E-value: 2.75e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241 29 SFFFICIYLHIAQGFYYGSYLYKE--TWNTGVILLLTLMATAFVGYVLPWGQMSFWGAMVITNLFSAIPYIGQTLVEWAW 106
Cdd:pfam13631 1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241 107 GGFSVDNPTLTRFFALHF-LLPFMISGLVLIHLTFLYETGSNNPLGLPSNCDKIPFHPYFSLKDLLGFTIMLLMLTSLAL 185
Cdd:pfam13631 81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160
|
....*....
gi 694881241 186 FSPNLLGDP 194
Cdd:pfam13631 161 INPIWLGGP 169
|
|
| PRK03735 |
PRK03735 |
cytochrome b6; Provisional |
3-150 |
4.75e-28 |
|
cytochrome b6; Provisional
Pssm-ID: 179639 Cd Length: 223 Bit Score: 108.26 E-value: 4.75e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241 3 AFSSVANMCRNVQYGWLIRNIHANGASFFFICIYLHIAQGFYYGSYLYKE--TWNTGVILLLTLMATAFVGYVLPWGQMS 80
Cdd:PRK03735 73 AYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRelNWVVGVLIFFVTVGLGFTGYLLPWDQKA 152
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 694881241 81 FWGAMVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALH-FLLPFMISGLVLIHLTFLYETGSNNPL 150
Cdd:PRK03735 153 YFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWALAVLMLAHFLMIRKQGISGPL 223
|
|
| petB |
CHL00070 |
cytochrome b6 |
3-150 |
3.64e-26 |
|
cytochrome b6
Pssm-ID: 177009 Cd Length: 215 Bit Score: 103.26 E-value: 3.64e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241 3 AFSSVANMCRNVQYGWLIRNIHANGASFFFICIYLHIAQGFYYGSYLYKE--TWNTGVILLLTLMATAFVGYVLPWGQMS 80
Cdd:CHL00070 65 AFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRelTWVTGVVLAVLTVSFGVTGYSLPWDQIG 144
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 694881241 81 FWGAMVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALH-FLLPFMISGLVLIHLTFLYETGSNNPL 150
Cdd:CHL00070 145 YWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSLHtFVLPLLTAVFMLMHFLMIRKQGISGPL 215
|
|
| petD |
CHL00058 |
cytochrome b6/f complex subunit IV |
180-266 |
2.67e-11 |
|
cytochrome b6/f complex subunit IV
Pssm-ID: 176998 Cd Length: 160 Bit Score: 60.79 E-value: 2.67e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241 180 LTSLALFSPNLLGDPenftpANPLVTPTHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLVLFLSPLLHK-SKQRTMAF 258
Cdd:CHL00058 51 NVGLAVLEPSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLENvNKFQNPFR 125
|
....*...
gi 694881241 259 RPASQLLF 266
Cdd:CHL00058 126 RPVATTVF 133
|
|
| PetD |
COG5679 |
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ... |
179-248 |
4.64e-11 |
|
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];
Pssm-ID: 444393 [Multi-domain] Cd Length: 161 Bit Score: 60.19 E-value: 4.64e-11
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241 179 MLTSLALFSPNLLGDPenftpANPLVTPTHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLVLFLSPLL 248
Cdd:COG5679 51 LCIGLAVLDPAMMGEP-----ADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPFI 115
|
|
| cytb6/f_IV |
TIGR01156 |
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ... |
180-271 |
1.60e-10 |
|
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]
Pssm-ID: 130224 [Multi-domain] Cd Length: 159 Bit Score: 58.66 E-value: 1.60e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881241 180 LTSLALFSPNLLGDPenftpANPLVTPTHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLVLFLSPLLHKSKQRTMAFR 259
Cdd:TIGR01156 51 VVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENVNKFQNPFR 125
|
90
....*....|....*
gi 694881241 260 ---PASQLLFWTLAA 271
Cdd:TIGR01156 126 rpvATTVFLFGTVVA 140
|
|
|