|
Name |
Accession |
Description |
Interval |
E-value |
| CYTB |
MTH00119 |
cytochrome b; Provisional |
1-319 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 214425 [Multi-domain] Cd Length: 380 Bit Score: 623.08 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881193 1 SLAFSSVVNTCRNVQYGWLIRNLHANGASLFFICIYLHIARGFYYGSYLYKETWNTGVILLLTLMATAFVGYVLPWGQMS 80
Cdd:MTH00119 61 SLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMS 140
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881193 81 FWGATVITNLFSAVPYIGQTLVEWTWGGFSVDNPTLTRFFALHFLLPFMITGLVLIHLTFLHESGSNNPLGIPSNCDKIP 160
Cdd:MTH00119 141 FWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIP 220
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881193 161 FHPYFSLKDLLGFMIMFLSLSSLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVL 240
Cdd:MTH00119 221 FHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASIL 300
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 694881193 241 ILLLSPLLHKSKQRTMAFRPISQLLFWALAANLFILTWVGSQPVEHPFITIGQLASLTYFSIILILIPITSSLENKILN 319
Cdd:MTH00119 301 ILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTILLILFPLLGALENKMLN 379
|
|
| QcrB/PetB |
COG1290 |
Cytochrome b subunit of the bc complex [Energy production and conversion]; |
1-314 |
1.53e-107 |
|
Cytochrome b subunit of the bc complex [Energy production and conversion];
Pssm-ID: 440901 [Multi-domain] Cd Length: 393 Bit Score: 318.66 E-value: 1.53e-107
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881193 1 SLAFSSVVNTCRNVQYGWLIRNLHANGASLFFICIYLHIARGFYYGSYlyKE----TWNTGVILLLTLMATAFVGYVLPW 76
Cdd:COG1290 69 SEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAY--KKprelNWIIGVLLLLLTMAEAFTGYSLPW 146
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881193 77 GQMSFWGATVITNLFSAVPYIGQTLVEWTWGGFSVDNPTLTRFFALH-FLLPFMITGLVLIHLTFLHESGSNNPLGI--- 152
Cdd:COG1290 147 DQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPerk 226
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881193 153 -PSNCDKIPFHPYFSLKDLLGFMIMFLSLSSLALFSPNllGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIP--NKL 229
Cdd:COG1290 227 kTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKL 304
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881193 230 GGVLALAASVLILLLSPLLHKSKQRTMAFRPISQLLFWALAANLFILTWVGSQPVehPFITIGQLASLTYFSIILILIPI 309
Cdd:COG1290 305 GGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTILGANPP--IATLLGSINTVTYFAFFLIVLPI 382
|
....*
gi 694881193 310 TSSLE 314
Cdd:COG1290 383 LAFIE 387
|
|
| Cytochrome_b_N |
cd00284 |
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
1-147 |
7.11e-71 |
|
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.
Pssm-ID: 238176 Cd Length: 200 Bit Score: 218.39 E-value: 7.11e-71
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881193 1 SLAFSSVVNTCRNVQYGWLIRNLHANGASLFFICIYLHIARGFYYGSY--LYKETWNTGVILLLTLMATAFVGYVLPWGQ 78
Cdd:cd00284 52 TLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQ 131
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 694881193 79 MSFWGATVITNLFSAVPYIGQTLVEWTWGGFSVDNPTLTRFFALHFLLPFMITGLVLIHLTFLHESGSN 147
Cdd:cd00284 132 MSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
|
|
| Cytochrome_B |
pfam00033 |
Cytochrome b/b6/petB; |
1-145 |
2.78e-62 |
|
Cytochrome b/b6/petB;
Pssm-ID: 306530 Cd Length: 189 Bit Score: 196.06 E-value: 2.78e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881193 1 SLAFSSVVNTCRNVQYGWLIRNLHANGASLFFICIYLHIARGFYYG--SYLYKETWNTGVILLLTLMATAFVGYVLPWGQ 78
Cdd:pfam00033 43 TLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQ 122
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 694881193 79 MSFWGATVITNLFSAVPYIGQTLVEWTWGGFSVDNPTLTRFFALHFLLPFMITGLVLIHLTFLHESG 145
Cdd:pfam00033 123 MSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILMLLHLLFLHETG 189
|
|
| cytb6/f_IV |
TIGR01156 |
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ... |
199-237 |
5.09e-08 |
|
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]
Pssm-ID: 130224 [Multi-domain] Cd Length: 159 Bit Score: 51.72 E-value: 5.09e-08
10 20 30
....*....|....*....|....*....|....*....
gi 694881193 199 PANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAA 237
Cdd:TIGR01156 65 PANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAA 103
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| CYTB |
MTH00119 |
cytochrome b; Provisional |
1-319 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 214425 [Multi-domain] Cd Length: 380 Bit Score: 623.08 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881193 1 SLAFSSVVNTCRNVQYGWLIRNLHANGASLFFICIYLHIARGFYYGSYLYKETWNTGVILLLTLMATAFVGYVLPWGQMS 80
Cdd:MTH00119 61 SLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMS 140
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881193 81 FWGATVITNLFSAVPYIGQTLVEWTWGGFSVDNPTLTRFFALHFLLPFMITGLVLIHLTFLHESGSNNPLGIPSNCDKIP 160
Cdd:MTH00119 141 FWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIP 220
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881193 161 FHPYFSLKDLLGFMIMFLSLSSLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVL 240
Cdd:MTH00119 221 FHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASIL 300
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 694881193 241 ILLLSPLLHKSKQRTMAFRPISQLLFWALAANLFILTWVGSQPVEHPFITIGQLASLTYFSIILILIPITSSLENKILN 319
Cdd:MTH00119 301 ILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTILLILFPLLGALENKMLN 379
|
|
| CYTB |
MTH00131 |
cytochrome b; Provisional |
1-319 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 177189 [Multi-domain] Cd Length: 380 Bit Score: 561.20 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881193 1 SLAFSSVVNTCRNVQYGWLIRNLHANGASLFFICIYLHIARGFYYGSYLYKETWNTGVILLLTLMATAFVGYVLPWGQMS 80
Cdd:MTH00131 60 STAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMS 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881193 81 FWGATVITNLFSAVPYIGQTLVEWTWGGFSVDNPTLTRFFALHFLLPFMITGLVLIHLTFLHESGSNNPLGIPSNCDKIP 160
Cdd:MTH00131 140 FWGATVITNLLSAVPYVGNTLVQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKIS 219
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881193 161 FHPYFSLKDLLGFMIMFLSLSSLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVL 240
Cdd:MTH00131 220 FHPYFSYKDLLGFAILLLALTSLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSIL 299
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 694881193 241 ILLLSPLLHKSKQRTMAFRPISQLLFWALAANLFILTWVGSQPVEHPFITIGQLASLTYFSIILILIPITSSLENKILN 319
Cdd:MTH00131 300 VLMVVPILHTSKQRGLTFRPLTQFLFWTLVADVLILTWIGGMPVEHPFIIIGQVASVLYFSLFLVLMPLAGWLENKALE 378
|
|
| CYTB |
MTH00100 |
cytochrome b; Provisional |
1-318 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 177162 [Multi-domain] Cd Length: 379 Bit Score: 556.94 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881193 1 SLAFSSVVNTCRNVQYGWLIRNLHANGASLFFICIYLHIARGFYYGSYLYKETWNTGVILLLTLMATAFVGYVLPWGQMS 80
Cdd:MTH00100 60 TTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMS 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881193 81 FWGATVITNLFSAVPYIGQTLVEWTWGGFSVDNPTLTRFFALHFLLPFMITGLVLIHLTFLHESGSNNPLGIPSNCDKIP 160
Cdd:MTH00100 140 FWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIP 219
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881193 161 FHPYFSLKDLLGFMIMFLSLSSLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVL 240
Cdd:MTH00100 220 FHPYYTIKDILGLLLLILTLMLLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSIL 299
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 694881193 241 ILLLSPLLHKSKQRTMAFRPISQLLFWALAANLFILTWVGSQPVEHPFITIGQLASLTYFSIILILIPITSSLENKIL 318
Cdd:MTH00100 300 ILAIIPLLHTSKQRSMMFRPLSQCLFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFLIILILMPIASLIENNLL 377
|
|
| CYTB |
MTH00074 |
cytochrome b; Provisional |
1-319 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 177145 [Multi-domain] Cd Length: 380 Bit Score: 541.96 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881193 1 SLAFSSVVNTCRNVQYGWLIRNLHANGASLFFICIYLHIARGFYYGSYLYKETWNTGVILLLTLMATAFVGYVLPWGQMS 80
Cdd:MTH00074 61 SSAFSSVAHICRDVNYGWLMRNIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMS 140
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881193 81 FWGATVITNLFSAVPYIGQTLVEWTWGGFSVDNPTLTRFFALHFLLPFMITGLVLIHLTFLHESGSNNPLGIPSNCDKIP 160
Cdd:MTH00074 141 FWGATVITNLLSAIPYMGDTLVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVP 220
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881193 161 FHPYFSLKDLLGFMIMFLSLSSLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVL 240
Cdd:MTH00074 221 FHPYFSYKDLLGFLIMLTALALLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASIL 300
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 694881193 241 ILLLSPLLHKSKQRTMAFRPISQLLFWALAANLFILTWVGSQPVEHPFITIGQLASLTYFSIILILIPITSSLENKILN 319
Cdd:MTH00074 301 ILMLIPMLHTSKQRSLMFRPLTQILFWLLVANTLILTWIGGQPVEDPFIEIGQAASILYFLLFIIIIPLTGWLENKLLK 379
|
|
| CYTB |
MTH00191 |
cytochrome b; Provisional |
1-309 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 177239 [Multi-domain] Cd Length: 365 Bit Score: 519.47 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881193 1 SLAFSSVVNTCRNVQYGWLIRNLHANGASLFFICIYLHIARGFYYGSYLYKETWNTGVILLLTLMATAFVGYVLPWGQMS 80
Cdd:MTH00191 57 SLAFSSVVHICRDVNYGWLLRNIHANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMS 136
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881193 81 FWGATVITNLFSAVPYIGQTLVEWTWGGFSVDNPTLTRFFALHFLLPFMITGLVLIHLTFLHESGSNNPLGIPSNCDKIP 160
Cdd:MTH00191 137 FWGATVITNLLSAIPYIGDDLVQWLWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIP 216
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881193 161 FHPYFSLKDLLGFMIMFLSLSSLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVL 240
Cdd:MTH00191 217 FHPYFSYKDILGFFILLFLLLFLVLFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSIL 296
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 694881193 241 ILLLSPLLHKSKQRTMAFRPISQLLFWALAANLFILTWVGSQPVEHPFITIGQLASLTYFSIILILIPI 309
Cdd:MTH00191 297 VLFLLPLLHTSKQRSNTFRPLTQVVFWLWVANFILLTWLGGQPVEDPFILLGQISSFLYFFLFLLLFPL 365
|
|
| CYTB |
MTH00156 |
cytochrome b; Provisional |
1-306 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 214440 [Multi-domain] Cd Length: 356 Bit Score: 515.10 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881193 1 SLAFSSVVNTCRNVQYGWLIRNLHANGASLFFICIYLHIARGFYYGSYLYKETWNTGVILLLTLMATAFVGYVLPWGQMS 80
Cdd:MTH00156 50 ELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMS 129
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881193 81 FWGATVITNLFSAVPYIGQTLVEWTWGGFSVDNPTLTRFFALHFLLPFMITGLVLIHLTFLHESGSNNPLGIPSNCDKIP 160
Cdd:MTH00156 130 FWGATVITNLLSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIP 209
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881193 161 FHPYFSLKDLLGFMIMFLSLSSLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVL 240
Cdd:MTH00156 210 FHPYFTFKDLVGFIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIL 289
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 694881193 241 ILLLSPLLHKSKQRTMAFRPISQLLFWALAANLFILTWVGSQPVEHPFITIGQLASLTYFSIILIL 306
Cdd:MTH00156 290 ILMILPFTNKSKFRGNQFYPINKILFWIFVNIVILLTWIGARPVEEPYILTGQILTILYFLYFIIN 355
|
|
| CYTB |
MTH00145 |
cytochrome b; Provisional |
1-318 |
8.35e-179 |
|
cytochrome b; Provisional
Pssm-ID: 177203 [Multi-domain] Cd Length: 379 Bit Score: 499.05 E-value: 8.35e-179
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881193 1 SLAFSSVVNTCRNVQYGWLIRNLHANGASLFFICIYLHIARGFYYGSYLYKETWNTGVILLLTLMATAFVGYVLPWGQMS 80
Cdd:MTH00145 61 DLAFSSVIHIMRDVNYGWLLRSLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMS 140
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881193 81 FWGATVITNLFSAVPYIGQTLVEWTWGGFSVDNPTLTRFFALHFLLPFMITGLVLIHLTFLHESGSNNPLGIPSNCDKIP 160
Cdd:MTH00145 141 FWGATVITNLLSAIPYVGKMLVEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVP 220
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881193 161 FHPYFSLKDLLGFMIMFLSLSSLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVL 240
Cdd:MTH00145 221 FHPYYTIKDLVGFVVLLFLLVFLVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIV 300
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 694881193 241 ILLLSPLLHKSKQRTMAFRPISQLLFWALAANLFILTWVGSQPVEHPFITIGQLASLTYFSIILIlIPITSSLENKIL 318
Cdd:MTH00145 301 ILFFLPLLHVGKFRSLSFYPLNQVLFWIFVGNFFILTWIGACPVEEPYETIGQVFTVLYFLFFLI-LPLVQKLWDNIL 377
|
|
| CYTB |
MTH00034 |
cytochrome b; Validated |
1-319 |
1.96e-174 |
|
cytochrome b; Validated
Pssm-ID: 177109 [Multi-domain] Cd Length: 379 Bit Score: 488.06 E-value: 1.96e-174
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881193 1 SLAFSSVVNTCRNVQYGWLIRNLHANGASLFFICIYLHIARGFYYGSYLYKETWNTGVILLLTLMATAFVGYVLPWGQMS 80
Cdd:MTH00034 60 SLAFSSVSHICRDVNYGWLLRNIHANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMS 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881193 81 FWGATVITNLFSAVPYIGQTLVEWTWGGFSVDNPTLTRFFALHFLLPFMITGLVLIHLTFLHESGSNNPLGIPSNCDKIP 160
Cdd:MTH00034 140 FWAATVITNLVSAVPYIGTDIVQWIWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVP 219
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881193 161 FHPYFSLKDLLGFMIMFLSLSSLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVL 240
Cdd:MTH00034 220 FHTYFTTKDLVGFLILFAALSSLALLFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAIL 299
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 694881193 241 ILLLSPLLHKSKQRTMAFRPISQLLFWALAANLFILTWVGSQPVEHPFITIGQLASLTYFSIILILIPITSSLENKILN 319
Cdd:MTH00034 300 VLFLVPILHTSNNQSSTFRPLSQIAFWLLIATFFILTWIGSQPVEYPFILLGQVASVLYFSLFLFFFPLISYLENKLIF 378
|
|
| CYTB |
MTH00016 |
cytochrome b; Validated |
2-318 |
1.42e-165 |
|
cytochrome b; Validated
Pssm-ID: 177102 [Multi-domain] Cd Length: 378 Bit Score: 465.69 E-value: 1.42e-165
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881193 2 LAFSSVVNTCRNVQYGWLIRNLHANGASLFFICIYLHIARGFYYGSYLYKETWNTGVILLLTLMATAFVGYVLPWGQMSF 81
Cdd:MTH00016 62 LAFSSVAHISRDVNYGWLLRNLHANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSF 141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881193 82 WGATVITNLFSAVPYIGQTLVEWTWGGFSVDNPTLTRFFALHFLLPFMITGLVLIHLTFLHESGSNNPLGIPSNCDKIPF 161
Cdd:MTH00016 142 WGATVITNLLSAIPYIGKMLVQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPF 221
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881193 162 HPYFSLKDLLGFMIMFLSLSSLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLI 241
Cdd:MTH00016 222 HPYYTSKDIVGFIVMLFLLLSVVLLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILI 301
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 694881193 242 LLLSPLLHKSKQRTMAFRPISQLLFWALAANLFILTWVGSQPVEHPFITIGQLASLTYFSiILILIPITSSLENKIL 318
Cdd:MTH00016 302 LFFLPFIFKQKFRGLSFYPLNQILFWLLVSNFLLLTWIGGRPVEPPYEFLGQIFTVFYFF-YFMINPLLMKLWDKLL 377
|
|
| CYTB |
MTH00053 |
cytochrome b; Provisional |
1-319 |
5.67e-150 |
|
cytochrome b; Provisional
Pssm-ID: 164624 [Multi-domain] Cd Length: 381 Bit Score: 426.04 E-value: 5.67e-150
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881193 1 SLAFSSVVNTCRNVQYGWLIRNLHANGASLFFICIYLHIARGFYYGSYLYKETWNTGVILLLTLMATAFVGYVLPWGQMS 80
Cdd:MTH00053 61 NLAFSSVAHITRDVNYGFILRYLHANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMS 140
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881193 81 FWGATVITNLFSAVPYIGQTLVEWTWGGFSVDNPTLTRFFALHFLLPFMITGLVLIHLTFLHESGSNNPLGIPSNCDKIP 160
Cdd:MTH00053 141 FWAATVITNLLSAIPYVGDDIVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIP 220
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881193 161 FHPYFSLKDLLGFMIMFLSLSSLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVL 240
Cdd:MTH00053 221 FHYYYVLKDLYGAVILLIILSIIVFLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSIL 300
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 694881193 241 ILLLSPLLHKSKQRTMAFRPISQLLFWALAANLFILTWVGSQPVEHPFITIGQLASLTYFSIILILIPITSSLENKILN 319
Cdd:MTH00053 301 VLFFLPYLHKSRFRGLSFRPLSKILFWFLVGDFFLLTWIGGQPVEEPYILIGQIASIFYFAYFLILMPLAGYLENKLLK 379
|
|
| CYTB |
MTH00022 |
cytochrome b; Validated |
1-319 |
7.70e-150 |
|
cytochrome b; Validated
Pssm-ID: 164595 [Multi-domain] Cd Length: 379 Bit Score: 425.65 E-value: 7.70e-150
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881193 1 SLAFSSVVNTCRNVQYGWLIRNLHANGASLFFICIYLHIARGFYYGSYLYKETWNTGVILLLTLMATAFVGYVLPWGQMS 80
Cdd:MTH00022 59 SLAFASVGHIMRDVNYGFLLRYLHANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMS 138
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881193 81 FWGATVITNLFSAVPYIGQTLVEWTWGGFSVDNPTLTRFFALHFLLPFMITGLVLIHLTFLHESGSNNPLGIPSNCDKIP 160
Cdd:MTH00022 139 FWGATVITNLLSAIPYVGTDIVQWVWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVS 218
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881193 161 FHPYFSLKDLLGFMIMFLSLSSLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVL 240
Cdd:MTH00022 219 FHVYYTSKDWYGIVVLFFLLSFIVYFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSIL 298
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 694881193 241 ILLLSPLLHKSKQRTMAFRPISQLLFWALAANLFILTWVGSQPVEHPFITIGQLASLTYFSIILILIPITSSLENKILN 319
Cdd:MTH00022 299 ILFFLPLLHTSWLRGLTFRPLGRMAFWFLIVDFILLTWIGSQVVEEPFILIGQLLSFFYFFYFLVLIPLLGELENQLLF 377
|
|
| CYTB |
MTH00224 |
cytochrome b; Provisional |
2-319 |
7.26e-140 |
|
cytochrome b; Provisional
Pssm-ID: 164767 [Multi-domain] Cd Length: 379 Bit Score: 400.45 E-value: 7.26e-140
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881193 2 LAFSSVVNTCRNVQYGWLIRNLHANGASLFFICIYLHIARGFYYGSYLYKETWNTGVILLLTLMATAFVGYVLPWGQMSF 81
Cdd:MTH00224 62 MAFSSVAHISRDVNYGWLLRSIHANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSF 141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881193 82 WGATVITNLFSAVPYIGQTLVEWTWGGFSVDNPTLTRFFALHFLLPFMITGLVLIHLTFLHESGSNNPLGIPSNCDKIPF 161
Cdd:MTH00224 142 WGATVITNLFSAIPYIGKDLVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPF 221
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881193 162 HPYFSLKDLLGFMIMFLSLSSLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLI 241
Cdd:MTH00224 222 HPYYSIKDALGYLIAILLLSLMVLFEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILI 301
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 694881193 242 LLLSPLLHKSKQRTMAFRPISQLLFWALAANLFILTWVGSQPVEHPFITIGQLASLTYFSiILILIPITSSLENKILN 319
Cdd:MTH00224 302 LFILPLTSVMNKRSLPFYPLNQLLFWLLVTSWAILTWIGGRPVEDPFEGIGQVFTILYFS-YFIISPAISKLWDDLLN 378
|
|
| CYTB |
MTH00033 |
cytochrome b; Provisional |
1-315 |
2.74e-114 |
|
cytochrome b; Provisional
Pssm-ID: 133672 [Multi-domain] Cd Length: 383 Bit Score: 335.75 E-value: 2.74e-114
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881193 1 SLAFSSVVNTCRNVQYGWLIRNLHANGASLFFICIYLHIARGFYYGSYLYKETWNTGVILLLTLMATAFVGYVLPWGQMS 80
Cdd:MTH00033 57 SLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMS 136
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881193 81 FWGATVITNLFSAVPYIGQTLVEWTWGGFSVDNPTLTRFFALHFLLPFMITGLVLIHLTFLHESGSNNPLGIPSNCDKIP 160
Cdd:MTH00033 137 FWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTLNRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTA 216
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881193 161 FHPYFSLKDLLGFMIMFLSLSSLALF--SPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAAS 238
Cdd:MTH00033 217 FHVYFTIKDILGFLILFGVFVIIGIEprIETLLQDPENFIQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFAS 296
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 694881193 239 VLILLLSPLLHKSKQRTMAFRPISQLLFWALAANLFILTWVGSQPV-EHPFITIGQLASLTYFSIILILIPITSSLEN 315
Cdd:MTH00033 297 ILVLLLMPILDRSKIRSLTFNPTGKFFFWFIVGDFIILTWIGSAPAgADPYVLIGRIATIFYFGYFLVLVPLLGYLSN 374
|
|
| QcrB/PetB |
COG1290 |
Cytochrome b subunit of the bc complex [Energy production and conversion]; |
1-314 |
1.53e-107 |
|
Cytochrome b subunit of the bc complex [Energy production and conversion];
Pssm-ID: 440901 [Multi-domain] Cd Length: 393 Bit Score: 318.66 E-value: 1.53e-107
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881193 1 SLAFSSVVNTCRNVQYGWLIRNLHANGASLFFICIYLHIARGFYYGSYlyKE----TWNTGVILLLTLMATAFVGYVLPW 76
Cdd:COG1290 69 SEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAY--KKprelNWIIGVLLLLLTMAEAFTGYSLPW 146
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881193 77 GQMSFWGATVITNLFSAVPYIGQTLVEWTWGGFSVDNPTLTRFFALH-FLLPFMITGLVLIHLTFLHESGSNNPLGI--- 152
Cdd:COG1290 147 DQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPerk 226
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881193 153 -PSNCDKIPFHPYFSLKDLLGFMIMFLSLSSLALFSPNllGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIP--NKL 229
Cdd:COG1290 227 kTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKL 304
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881193 230 GGVLALAASVLILLLSPLLHKSKQRTMAFRPISQLLFWALAANLFILTWVGSQPVehPFITIGQLASLTYFSIILILIPI 309
Cdd:COG1290 305 GGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTILGANPP--IATLLGSINTVTYFAFFLIVLPI 382
|
....*
gi 694881193 310 TSSLE 314
Cdd:COG1290 383 LAFIE 387
|
|
| CYTB |
MTH00086 |
cytochrome b; Provisional |
1-306 |
5.12e-98 |
|
cytochrome b; Provisional
Pssm-ID: 177151 [Multi-domain] Cd Length: 355 Bit Score: 293.00 E-value: 5.12e-98
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881193 1 SLAFSSVVNTCRNVQYGWLIRNLHANGASLFFICIYLHIARGFYYGSYLYKETWNTGVILLLTLMATAFVGYVLPWGQMS 80
Cdd:MTH00086 49 SMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMS 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881193 81 FWGATVITNLFSAVPYIGQTLVEWTWGGFSVDNPTLTRFFALHFLLPFMITGLVLIHLTFLHESGSNNPLGIPSNCDKIP 160
Cdd:MTH00086 129 FWAAVVITSLLSVIPIWGPSIVMWIWGGFGVSSATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKIC 208
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881193 161 FHPYFSLKDLLGfMIMFLSLSSLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVL 240
Cdd:MTH00086 209 FGPEYWNKDAYN-IIFWLVFIIFSLFYPFNLGDPEMFIEADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMSIV 287
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 694881193 241 ILLLSPLLHKSkqrTMAFRPISQLLFWALAANLFILTWVGSQPVEHPFITIGQLASLTYFSIILIL 306
Cdd:MTH00086 288 VFYFFIFVNNY---TSCLNKLNKFLVFSFIVVNVILSWLGQCLVEYPFLFLSQIFSFIYFFLILLM 350
|
|
| CYTB |
MTH00046 |
cytochrome b; Validated |
1-305 |
2.09e-77 |
|
cytochrome b; Validated
Pssm-ID: 177121 [Multi-domain] Cd Length: 355 Bit Score: 240.27 E-value: 2.09e-77
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881193 1 SLAFSSVVNTCRNVQYGWLIRNLHANGASLFFICIYLHIARGFYYGSYLYKETWNTGVILLLTLMATAFVGYVLPWGQMS 80
Cdd:MTH00046 51 LCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLFILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMS 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881193 81 FWGATVITNLFSAVPYIGQTLVEWTWGGFSVDNPTLTRFFALHFLLPFMITGLVLIHLTFLHESGSNNPLGIPSN-CDKI 159
Cdd:MTH00046 131 YWAATVLTSIVDSVPIVGSLVYKYIVGGFSVTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSSNGySDVV 210
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881193 160 PFHPYFSLKDLLGFMIMFLSLSSLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGvLALAASV 239
Cdd:MTH00046 211 YFHSYFTVKDLFLFMVVCSLLVFWLFVSPDLVLDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRSINSKIGG-LVLVLSF 289
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 694881193 240 LILLLSPLLHKSKqrtmAFRPISQLLFWALAANLFILTWVGSQPVEHPFITIGQLASLTYFSIILI 305
Cdd:MTH00046 290 LFFLWVPTFNGSS----VYSVWRQVNFWLIVSLFFSLSYLGGCHPEYPYLLISQLFSVLMVLLLFI 351
|
|
| Cytochrome_b_N |
cd00284 |
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
1-147 |
7.11e-71 |
|
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.
Pssm-ID: 238176 Cd Length: 200 Bit Score: 218.39 E-value: 7.11e-71
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881193 1 SLAFSSVVNTCRNVQYGWLIRNLHANGASLFFICIYLHIARGFYYGSY--LYKETWNTGVILLLTLMATAFVGYVLPWGQ 78
Cdd:cd00284 52 TLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQ 131
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 694881193 79 MSFWGATVITNLFSAVPYIGQTLVEWTWGGFSVDNPTLTRFFALHFLLPFMITGLVLIHLTFLHESGSN 147
Cdd:cd00284 132 MSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
|
|
| Cytochrome_B |
pfam00033 |
Cytochrome b/b6/petB; |
1-145 |
2.78e-62 |
|
Cytochrome b/b6/petB;
Pssm-ID: 306530 Cd Length: 189 Bit Score: 196.06 E-value: 2.78e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881193 1 SLAFSSVVNTCRNVQYGWLIRNLHANGASLFFICIYLHIARGFYYG--SYLYKETWNTGVILLLTLMATAFVGYVLPWGQ 78
Cdd:pfam00033 43 TLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQ 122
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 694881193 79 MSFWGATVITNLFSAVPYIGQTLVEWTWGGFSVDNPTLTRFFALHFLLPFMITGLVLIHLTFLHESG 145
Cdd:pfam00033 123 MSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILMLLHLLFLHETG 189
|
|
| cytochrome_b_C |
cd00290 |
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
148-295 |
2.22e-49 |
|
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.
Pssm-ID: 238179 [Multi-domain] Cd Length: 147 Bit Score: 161.27 E-value: 2.22e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881193 148 NPLGIPSNCDKIPFHPYFSLKDLLGFMIMFLSLSSLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPN 227
Cdd:cd00290 1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 694881193 228 KLGGVLALAASVLILLLSPLLHKSKQRTMaFRPISQLLFWALAANLFILTWVGSQPVEHPFITIGQLA 295
Cdd:cd00290 81 KLLGVLAMAASILSLFLVPFLENSNKRSQ-FRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQLF 147
|
|
| Cytochrom_B_N_2 |
pfam13631 |
Cytochrome b(N-terminal)/b6/petB; |
29-194 |
8.06e-45 |
|
Cytochrome b(N-terminal)/b6/petB;
Pssm-ID: 433364 Cd Length: 169 Bit Score: 150.47 E-value: 8.06e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881193 29 SLFFICIYLHIARGFYYGSYLYKE--TWNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWTW 106
Cdd:pfam13631 1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881193 107 GGFSVDNPTLTRFFALHF-LLPFMITGLVLIHLTFLHESGSNNPLGIPSNCDKIPFHPYFSLKDLLGFMIMFLSLSSLAL 185
Cdd:pfam13631 81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160
|
....*....
gi 694881193 186 FSPNLLGDP 194
Cdd:pfam13631 161 INPIWLGGP 169
|
|
| Cytochrom_B_C |
pfam00032 |
Cytochrome b(C-terminal)/b6/petD; |
199-299 |
1.29e-41 |
|
Cytochrome b(C-terminal)/b6/petD;
Pssm-ID: 459640 [Multi-domain] Cd Length: 101 Bit Score: 139.92 E-value: 1.29e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881193 199 PANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILLLSPLLHKSKQRTMAFRPISQLLFWALAANLFILTW 278
Cdd:pfam00032 1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80
|
90 100
....*....|....*....|.
gi 694881193 279 VGSQPVEHPFITIGQLASLTY 299
Cdd:pfam00032 81 LGKQPPTGPYTLLGQIATVYY 101
|
|
| PRK03735 |
PRK03735 |
cytochrome b6; Provisional |
3-150 |
5.53e-29 |
|
cytochrome b6; Provisional
Pssm-ID: 179639 Cd Length: 223 Bit Score: 110.96 E-value: 5.53e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881193 3 AFSSVVNTCRNVQYGWLIRNLHANGASLFFICIYLHIARGFYYGSYLYKE--TWNTGVILLLTLMATAFVGYVLPWGQMS 80
Cdd:PRK03735 73 AYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRelNWVVGVLIFFVTVGLGFTGYLLPWDQKA 152
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 694881193 81 FWGATVITNLFSAVPYIGQTLVEWTWGGFSVDNPTLTRFFALH-FLLPFMITGLVLIHLTFLHESGSNNPL 150
Cdd:PRK03735 153 YFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWALAVLMLAHFLMIRKQGISGPL 223
|
|
| petB |
CHL00070 |
cytochrome b6 |
3-150 |
9.42e-27 |
|
cytochrome b6
Pssm-ID: 177009 Cd Length: 215 Bit Score: 104.80 E-value: 9.42e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881193 3 AFSSVVNTCRNVQYGWLIRNLHANGASLFFICIYLHIARGFYYGSYLYKE--TWNTGVILLLTLMATAFVGYVLPWGQMS 80
Cdd:CHL00070 65 AFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRelTWVTGVVLAVLTVSFGVTGYSLPWDQIG 144
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 694881193 81 FWGATVITNLFSAVPYIGQTLVEWTWGGFSVDNPTLTRFFALH-FLLPFMITGLVLIHLTFLHESGSNNPL 150
Cdd:CHL00070 145 YWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSLHtFVLPLLTAVFMLMHFLMIRKQGISGPL 215
|
|
| petD |
CHL00058 |
cytochrome b6/f complex subunit IV |
199-237 |
2.86e-09 |
|
cytochrome b6/f complex subunit IV
Pssm-ID: 176998 Cd Length: 160 Bit Score: 55.01 E-value: 2.86e-09
10 20 30
....*....|....*....|....*....|....*....
gi 694881193 199 PANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAA 237
Cdd:CHL00058 65 PADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMAS 103
|
|
| PetD |
COG5679 |
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ... |
199-237 |
9.41e-09 |
|
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];
Pssm-ID: 444393 [Multi-domain] Cd Length: 161 Bit Score: 53.64 E-value: 9.41e-09
10 20 30
....*....|....*....|....*....|....*....
gi 694881193 199 PANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAA 237
Cdd:COG5679 66 PADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAA 104
|
|
| cytb6/f_IV |
TIGR01156 |
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ... |
199-237 |
5.09e-08 |
|
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]
Pssm-ID: 130224 [Multi-domain] Cd Length: 159 Bit Score: 51.72 E-value: 5.09e-08
10 20 30
....*....|....*....|....*....|....*....
gi 694881193 199 PANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAA 237
Cdd:TIGR01156 65 PANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAA 103
|
|
| |
