|
Name |
Accession |
Description |
Interval |
E-value |
| CYTB |
MTH00119 |
cytochrome b; Provisional |
1-127 |
2.03e-81 |
|
cytochrome b; Provisional
Pssm-ID: 214425 [Multi-domain] Cd Length: 380 Bit Score: 243.66 E-value: 2.03e-81
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694880957 1 ATVITNLFSAIPYIGHTLVEWAWGGFSVDNPTLTRFFTLHFLLPFMITSLVLIHLTFLHESGSNNPLGIPSNCDKIPFHP 80
Cdd:MTH00119 144 ATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHP 223
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 694880957 81 YFSLKDLLGFTIMLFLLTTLALFSPNLLGDPENFTPANPLVTPPHIK 127
Cdd:MTH00119 224 YFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIK 270
|
|
| QcrB/PetB |
COG1290 |
Cytochrome b subunit of the bc complex [Energy production and conversion]; |
1-127 |
9.83e-37 |
|
Cytochrome b subunit of the bc complex [Energy production and conversion];
Pssm-ID: 440901 [Multi-domain] Cd Length: 393 Bit Score: 128.75 E-value: 9.83e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694880957 1 ATVITNLFSAIPYIGHTLVEWAWGGFSVDNPTLTRFFTLH-FLLPFMITSLVLIHLTFLHESGSNNPLGI----PSNCDK 75
Cdd:COG1290 154 ARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPerkkTEKVDG 233
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 694880957 76 IPFHPYFSLKDLLGFTIMLFLLTTLALFSPNllGDPENFTPANPLVTPPHIK 127
Cdd:COG1290 234 VPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPANPLATPAHIQ 283
|
|
| Cytochrome_b_N |
cd00284 |
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
1-64 |
2.42e-28 |
|
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.
Pssm-ID: 238176 Cd Length: 200 Bit Score: 102.45 E-value: 2.42e-28
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 694880957 1 ATVITNLFSAIPYIGHTLVEWAWGGFSVDNPTLTRFFTLHFLLPFMITSLVLIHLTFLHESGSN 64
Cdd:cd00284 137 ATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
|
|
| Cytochrom_B_N_2 |
pfam13631 |
Cytochrome b(N-terminal)/b6/petB; |
1-111 |
4.07e-23 |
|
Cytochrome b(N-terminal)/b6/petB;
Pssm-ID: 433364 Cd Length: 169 Bit Score: 88.07 E-value: 4.07e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694880957 1 ATVITNLFSAIPYIGHTLVEWAWGGFSVDNPTLTRFFTLHF-LLPFMITSLVLIHLTFLHESGSNNPLGIPSNCDKIPFH 79
Cdd:pfam13631 58 LRIGLGILSSIPVVGTWLVWLLFGGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFW 137
|
90 100 110
....*....|....*....|....*....|..
gi 694880957 80 PYFSLKDLLGFTIMLFLLTTLALFSPNLLGDP 111
Cdd:pfam13631 138 PVFAVKMLLFFLITVALLIGLAQINPIWLGGP 169
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| CYTB |
MTH00119 |
cytochrome b; Provisional |
1-127 |
2.03e-81 |
|
cytochrome b; Provisional
Pssm-ID: 214425 [Multi-domain] Cd Length: 380 Bit Score: 243.66 E-value: 2.03e-81
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694880957 1 ATVITNLFSAIPYIGHTLVEWAWGGFSVDNPTLTRFFTLHFLLPFMITSLVLIHLTFLHESGSNNPLGIPSNCDKIPFHP 80
Cdd:MTH00119 144 ATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHP 223
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 694880957 81 YFSLKDLLGFTIMLFLLTTLALFSPNLLGDPENFTPANPLVTPPHIK 127
Cdd:MTH00119 224 YFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIK 270
|
|
| CYTB |
MTH00156 |
cytochrome b; Provisional |
1-127 |
2.58e-75 |
|
cytochrome b; Provisional
Pssm-ID: 214440 [Multi-domain] Cd Length: 356 Bit Score: 226.97 E-value: 2.58e-75
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694880957 1 ATVITNLFSAIPYIGHTLVEWAWGGFSVDNPTLTRFFTLHFLLPFMITSLVLIHLTFLHESGSNNPLGIPSNCDKIPFHP 80
Cdd:MTH00156 133 ATVITNLLSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHP 212
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 694880957 81 YFSLKDLLGFTIMLFLLTTLALFSPNLLGDPENFTPANPLVTPPHIK 127
Cdd:MTH00156 213 YFTFKDLVGFIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQ 259
|
|
| CYTB |
MTH00131 |
cytochrome b; Provisional |
1-127 |
5.74e-73 |
|
cytochrome b; Provisional
Pssm-ID: 177189 [Multi-domain] Cd Length: 380 Bit Score: 221.83 E-value: 5.74e-73
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694880957 1 ATVITNLFSAIPYIGHTLVEWAWGGFSVDNPTLTRFFTLHFLLPFMITSLVLIHLTFLHESGSNNPLGIPSNCDKIPFHP 80
Cdd:MTH00131 143 ATVITNLLSAVPYVGNTLVQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHP 222
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 694880957 81 YFSLKDLLGFTIMLFLLTTLALFSPNLLGDPENFTPANPLVTPPHIK 127
Cdd:MTH00131 223 YFSYKDLLGFAILLLALTSLALFSPNLLGDPDNFTPANPLVTPPHIK 269
|
|
| CYTB |
MTH00100 |
cytochrome b; Provisional |
1-127 |
2.38e-71 |
|
cytochrome b; Provisional
Pssm-ID: 177162 [Multi-domain] Cd Length: 379 Bit Score: 217.58 E-value: 2.38e-71
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694880957 1 ATVITNLFSAIPYIGHTLVEWAWGGFSVDNPTLTRFFTLHFLLPFMITSLVLIHLTFLHESGSNNPLGIPSNCDKIPFHP 80
Cdd:MTH00100 143 ATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHP 222
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 694880957 81 YFSLKDLLGFTIMLFLLTTLALFSPNLLGDPENFTPANPLVTPPHIK 127
Cdd:MTH00100 223 YYTIKDILGLLLLILTLMLLVLFSPDLLGDPDNYTPANPLNTPPHIK 269
|
|
| CYTB |
MTH00191 |
cytochrome b; Provisional |
1-127 |
4.93e-71 |
|
cytochrome b; Provisional
Pssm-ID: 177239 [Multi-domain] Cd Length: 365 Bit Score: 216.32 E-value: 4.93e-71
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694880957 1 ATVITNLFSAIPYIGHTLVEWAWGGFSVDNPTLTRFFTLHFLLPFMITSLVLIHLTFLHESGSNNPLGIPSNCDKIPFHP 80
Cdd:MTH00191 140 ATVITNLLSAIPYIGDDLVQWLWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHP 219
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 694880957 81 YFSLKDLLGFTIMLFLLTTLALFSPNLLGDPENFTPANPLVTPPHIK 127
Cdd:MTH00191 220 YFSYKDILGFFILLFLLLFLVLFSPNLLGDPENFIPANPLVTPVHIK 266
|
|
| CYTB |
MTH00145 |
cytochrome b; Provisional |
1-127 |
6.40e-69 |
|
cytochrome b; Provisional
Pssm-ID: 177203 [Multi-domain] Cd Length: 379 Bit Score: 211.69 E-value: 6.40e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694880957 1 ATVITNLFSAIPYIGHTLVEWAWGGFSVDNPTLTRFFTLHFLLPFMITSLVLIHLTFLHESGSNNPLGIPSNCDKIPFHP 80
Cdd:MTH00145 144 ATVITNLLSAIPYVGKMLVEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHP 223
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 694880957 81 YFSLKDLLGFTIMLFLLTTLALFSPNLLGDPENFTPANPLVTPPHIK 127
Cdd:MTH00145 224 YYTIKDLVGFVVLLFLLVFLVLFFPNLLGDPENFIPANPMVTPVHIQ 270
|
|
| CYTB |
MTH00074 |
cytochrome b; Provisional |
1-127 |
6.78e-69 |
|
cytochrome b; Provisional
Pssm-ID: 177145 [Multi-domain] Cd Length: 380 Bit Score: 211.46 E-value: 6.78e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694880957 1 ATVITNLFSAIPYIGHTLVEWAWGGFSVDNPTLTRFFTLHFLLPFMITSLVLIHLTFLHESGSNNPLGIPSNCDKIPFHP 80
Cdd:MTH00074 144 ATVITNLLSAIPYMGDTLVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHP 223
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 694880957 81 YFSLKDLLGFTIMLFLLTTLALFSPNLLGDPENFTPANPLVTPPHIK 127
Cdd:MTH00074 224 YFSYKDLLGFLIMLTALALLSLFSPNLLGDPDNFTPANPLVTPPHIQ 270
|
|
| CYTB |
MTH00016 |
cytochrome b; Validated |
1-127 |
5.57e-67 |
|
cytochrome b; Validated
Pssm-ID: 177102 [Multi-domain] Cd Length: 378 Bit Score: 206.45 E-value: 5.57e-67
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694880957 1 ATVITNLFSAIPYIGHTLVEWAWGGFSVDNPTLTRFFTLHFLLPFMITSLVLIHLTFLHESGSNNPLGIPSNCDKIPFHP 80
Cdd:MTH00016 144 ATVITNLLSAIPYIGKMLVQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHP 223
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 694880957 81 YFSLKDLLGFTIMLFLLTTLALFSPNLLGDPENFTPANPLVTPPHIK 127
Cdd:MTH00016 224 YYTSKDIVGFIVMLFLLLSVVLLWPNILGDPENFIPANPLVTPTHIK 270
|
|
| CYTB |
MTH00034 |
cytochrome b; Validated |
1-127 |
1.13e-62 |
|
cytochrome b; Validated
Pssm-ID: 177109 [Multi-domain] Cd Length: 379 Bit Score: 195.69 E-value: 1.13e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694880957 1 ATVITNLFSAIPYIGHTLVEWAWGGFSVDNPTLTRFFTLHFLLPFMITSLVLIHLTFLHESGSNNPLGIPSNCDKIPFHP 80
Cdd:MTH00034 143 ATVITNLVSAVPYIGTDIVQWIWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHT 222
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 694880957 81 YFSLKDLLGFTIMLFLLTTLALFSPNLLGDPENFTPANPLVTPPHIK 127
Cdd:MTH00034 223 YFTTKDLVGFLILFAALSSLALLFPTALNDPENFIPANPLVTPPHIQ 269
|
|
| CYTB |
MTH00224 |
cytochrome b; Provisional |
1-127 |
3.12e-53 |
|
cytochrome b; Provisional
Pssm-ID: 164767 [Multi-domain] Cd Length: 379 Bit Score: 171.26 E-value: 3.12e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694880957 1 ATVITNLFSAIPYIGHTLVEWAWGGFSVDNPTLTRFFTLHFLLPFMITSLVLIHLTFLHESGSNNPLGIPSNCDKIPFHP 80
Cdd:MTH00224 144 ATVITNLFSAIPYIGKDLVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHP 223
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 694880957 81 YFSLKDLLGFTIMLFLLTTLALFSPNLLGDPENFTPANPLVTPPHIK 127
Cdd:MTH00224 224 YYSIKDALGYLIAILLLSLMVLFEPNLFTDPENFLMANPLVTPIHIK 270
|
|
| CYTB |
MTH00053 |
cytochrome b; Provisional |
1-127 |
4.75e-53 |
|
cytochrome b; Provisional
Pssm-ID: 164624 [Multi-domain] Cd Length: 381 Bit Score: 170.66 E-value: 4.75e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694880957 1 ATVITNLFSAIPYIGHTLVEWAWGGFSVDNPTLTRFFTLHFLLPFMITSLVLIHLTFLHESGSNNPLGIPSNCDKIPFHP 80
Cdd:MTH00053 144 ATVITNLLSAIPYVGDDIVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHY 223
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 694880957 81 YFSLKDLLGFTIMLFLLTTLALFSPNLLGDPENFTPANPLVTPPHIK 127
Cdd:MTH00053 224 YYVLKDLYGAVILLIILSIIVFLFPYSLGDAENFKQANPLVTPVHIK 270
|
|
| CYTB |
MTH00022 |
cytochrome b; Validated |
1-127 |
1.54e-51 |
|
cytochrome b; Validated
Pssm-ID: 164595 [Multi-domain] Cd Length: 379 Bit Score: 166.80 E-value: 1.54e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694880957 1 ATVITNLFSAIPYIGHTLVEWAWGGFSVDNPTLTRFFTLHFLLPFMITSLVLIHLTFLHESGSNNPLGIPSNCDKIPFHP 80
Cdd:MTH00022 142 ATVITNLLSAIPYVGTDIVQWVWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHV 221
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 694880957 81 YFSLKDLLGFTIMLFLLTTLALFSPNLLGDPENFTPANPLVTPPHIK 127
Cdd:MTH00022 222 YYTSKDWYGIVVLFFLLSFIVYFAPNLLGDPENFIQANSLVTPVHIQ 268
|
|
| CYTB |
MTH00033 |
cytochrome b; Provisional |
1-127 |
6.38e-39 |
|
cytochrome b; Provisional
Pssm-ID: 133672 [Multi-domain] Cd Length: 383 Bit Score: 134.30 E-value: 6.38e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694880957 1 ATVITNLFSAIPYIGHTLVEWAWGGFSVDNPTLTRFFTLHFLLPFMITSLVLIHLTFLHESGSNNPLGIPSNCDKIPFHP 80
Cdd:MTH00033 140 ATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTLNRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHV 219
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 694880957 81 YFSLKDLLGFTIMLFLLTTLALFS--PNLLGDPENFTPANPLVTPPHIK 127
Cdd:MTH00033 220 YFTIKDILGFLILFGVFVIIGIEPriETLLQDPENFIQANPLVTPVHIQ 268
|
|
| CYTB |
MTH00086 |
cytochrome b; Provisional |
1-126 |
5.26e-37 |
|
cytochrome b; Provisional
Pssm-ID: 177151 [Multi-domain] Cd Length: 355 Bit Score: 128.52 E-value: 5.26e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694880957 1 ATVITNLFSAIPYIGHTLVEWAWGGFSVDNPTLTRFFTLHFLLPFMITSLVLIHLTFLHESGSNNPLGIPSNCDKIPFHP 80
Cdd:MTH00086 132 AVVITSLLSVIPIWGPSIVMWIWGGFGVSSATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGP 211
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 694880957 81 YFSLKDLLGFtIMLFLLTTLALFSPNLLGDPENFTPANPLVTPPHI 126
Cdd:MTH00086 212 EYWNKDAYNI-IFWLVFIIFSLFYPFNLGDPEMFIEADPMMSPVHI 256
|
|
| QcrB/PetB |
COG1290 |
Cytochrome b subunit of the bc complex [Energy production and conversion]; |
1-127 |
9.83e-37 |
|
Cytochrome b subunit of the bc complex [Energy production and conversion];
Pssm-ID: 440901 [Multi-domain] Cd Length: 393 Bit Score: 128.75 E-value: 9.83e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694880957 1 ATVITNLFSAIPYIGHTLVEWAWGGFSVDNPTLTRFFTLH-FLLPFMITSLVLIHLTFLHESGSNNPLGI----PSNCDK 75
Cdd:COG1290 154 ARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPerkkTEKVDG 233
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 694880957 76 IPFHPYFSLKDLLGFTIMLFLLTTLALFSPNllGDPENFTPANPLVTPPHIK 127
Cdd:COG1290 234 VPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPANPLATPAHIQ 283
|
|
| CYTB |
MTH00046 |
cytochrome b; Validated |
1-127 |
1.29e-29 |
|
cytochrome b; Validated
Pssm-ID: 177121 [Multi-domain] Cd Length: 355 Bit Score: 109.30 E-value: 1.29e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694880957 1 ATVITNLFSAIPYIGHTLVEWAWGGFSVDNPTLTRFFTLHFLLPFMITSLVLIHLTFLHESGSNNPLGIPSN-CDKIPFH 79
Cdd:MTH00046 134 ATVLTSIVDSVPIVGSLVYKYIVGGFSVTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSSNGySDVVYFH 213
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 694880957 80 PYFSLKDLLGFTIMLFLLTTLALFSPNLLGDPENFTPANPLVTPPHIK 127
Cdd:MTH00046 214 SYFTVKDLFLFMVVCSLLVFWLFVSPDLVLDIEAYLEADPLVTPVSIK 261
|
|
| Cytochrome_b_N |
cd00284 |
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
1-64 |
2.42e-28 |
|
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.
Pssm-ID: 238176 Cd Length: 200 Bit Score: 102.45 E-value: 2.42e-28
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 694880957 1 ATVITNLFSAIPYIGHTLVEWAWGGFSVDNPTLTRFFTLHFLLPFMITSLVLIHLTFLHESGSN 64
Cdd:cd00284 137 ATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
|
|
| Cytochrom_B_N_2 |
pfam13631 |
Cytochrome b(N-terminal)/b6/petB; |
1-111 |
4.07e-23 |
|
Cytochrome b(N-terminal)/b6/petB;
Pssm-ID: 433364 Cd Length: 169 Bit Score: 88.07 E-value: 4.07e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694880957 1 ATVITNLFSAIPYIGHTLVEWAWGGFSVDNPTLTRFFTLHF-LLPFMITSLVLIHLTFLHESGSNNPLGIPSNCDKIPFH 79
Cdd:pfam13631 58 LRIGLGILSSIPVVGTWLVWLLFGGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFW 137
|
90 100 110
....*....|....*....|....*....|..
gi 694880957 80 PYFSLKDLLGFTIMLFLLTTLALFSPNLLGDP 111
Cdd:pfam13631 138 PVFAVKMLLFFLITVALLIGLAQINPIWLGGP 169
|
|
| Cytochrome_B |
pfam00033 |
Cytochrome b/b6/petB; |
1-62 |
6.56e-23 |
|
Cytochrome b/b6/petB;
Pssm-ID: 306530 Cd Length: 189 Bit Score: 88.21 E-value: 6.56e-23
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 694880957 1 ATVITNLFSAIPYIGHTLVEWAWGGFSVDNPTLTRFFTLHFLLPFMITSLVLIHLTFLHESG 62
Cdd:pfam00033 128 ATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILMLLHLLFLHETG 189
|
|
| cytochrome_b_C |
cd00290 |
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
65-127 |
1.53e-17 |
|
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.
Pssm-ID: 238179 [Multi-domain] Cd Length: 147 Bit Score: 73.06 E-value: 1.53e-17
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 694880957 65 NPLGIPSNCDKIPFHPYFSLKDLLGFTIMLFLLTTLALFSPNLLGDPENFTPANPLVTPPHIK 127
Cdd:cd00290 1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHIL 63
|
|
| petB |
CHL00070 |
cytochrome b6 |
3-67 |
5.76e-09 |
|
cytochrome b6
Pssm-ID: 177009 Cd Length: 215 Bit Score: 51.65 E-value: 5.76e-09
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 694880957 3 VITNLFSAIPYIGHTLVEWAWGGFSVDNPTLTRFFTLH-FLLPFMITSLVLIHLTFLHESGSNNPL 67
Cdd:CHL00070 150 IVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSLHtFVLPLLTAVFMLMHFLMIRKQGISGPL 215
|
|
| PRK03735 |
PRK03735 |
cytochrome b6; Provisional |
3-67 |
4.62e-08 |
|
cytochrome b6; Provisional
Pssm-ID: 179639 Cd Length: 223 Bit Score: 49.32 E-value: 4.62e-08
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 694880957 3 VITNLFSAIPYIGHTLVEWAWGGFSVDNPTLTRFFTLH-FLLPFMITSLVLIHLTFLHESGSNNPL 67
Cdd:PRK03735 158 VGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWALAVLMLAHFLMIRKQGISGPL 223
|
|
|