|
Name |
Accession |
Description |
Interval |
E-value |
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
156-423 |
4.39e-17 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 81.31 E-value: 4.39e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6912630 156 YQKAKAAFEKALEVEPDNPEFNIGYAITVYRLDDSDRegsvksfSLGPLRKAVTLNPDNSYIKVFLALKLQDVHAEAEGE 235
Cdd:COG2956 24 PDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDR-------AIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAE 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6912630 236 KYIEEILDQISSQPYVLRYAAKFYRRKNSWNKALELLKKALEVTPTSSFLHHQMGLCYRAQmiqikkathnrpkgKDKLK 315
Cdd:COG2956 97 ELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQ--------------GDYDE 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6912630 316 vdelissAIFHFKAAMERDSMFAFAYTDLANMYAEGGQYSNAEDIFRKALRLenitDDHKHQIHYHYGRFQEfHRKSENT 395
Cdd:COG2956 163 -------AIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQ----DPDYLPALPRLAELYE-KLGDPEE 230
|
250 260
....*....|....*....|....*...
gi 6912630 396 AIHHYLEALKVKDRSPLRTKLTSALKKL 423
Cdd:COG2956 231 ALELLRKALELDPSDDLLLALADLLERK 258
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
254-478 |
1.40e-12 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 67.83 E-value: 1.40e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6912630 254 YAAKFYRRKNSWNKALELLKKALEVTPTSSFLHHQMGLCYRAQmiqikkathnrpkgkdklkvdELISSAIFHFKAAMER 333
Cdd:COG2956 13 FKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRR---------------------GEYDRAIRIHQKLLER 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6912630 334 DSMFAFAYTDLANMYAEGGQYSNAEDIFRKALRLenitDDHKHQIHYHYGRFQEFHRKSENtAIHHYLEALKVKDRSP-- 411
Cdd:COG2956 72 DPDRAEALLELAQDYLKAGLLDRAEELLEKLLEL----DPDDAEALRLLAEIYEQEGDWEK-AIEVLERLLKLGPENAha 146
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 6912630 412 --------LRTKLTSALKKLSTKRLCHNALDVQSLSALGFVYKLEGEKRQAAEYYEKAQKIDPENAEFLTALCEL 478
Cdd:COG2956 147 ycelaelyLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAEL 221
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
323-482 |
1.13e-11 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 66.94 E-value: 1.13e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6912630 323 AIFHFKAAMERDSMFAFAYTDLANMYAEGGQYSNAEDIFRKALRLEnitDDHkHQIHYHYGR-FQEFHRKSEntAIHHYL 401
Cdd:COG3914 97 ALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALN---PDF-AEAYLNLGEaLRRLGRLEE--AIAALR 170
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6912630 402 EALKVKDRsplrtkltsalkklstkrlchnalDVQSLSALGFVYKLEGEKRQAAEYYEKAQKIDPENAEFLTALCELRLS 481
Cdd:COG3914 171 RALELDPD------------------------NAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQ 226
|
.
gi 6912630 482 I 482
Cdd:COG3914 227 A 227
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
156-280 |
3.65e-11 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 60.98 E-value: 3.65e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6912630 156 YQKAKAAFEKALEVEPDNPEFNIGYAITVYRLDDSDRegsvksfSLGPLRKAVTLNPDNSYIKVFLALKLQDVHAEAEGE 235
Cdd:COG4783 20 YDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDE-------AIVLLHEALELDPDEPEARLNLGLALLKAGDYDEAL 92
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 6912630 236 KYIEEILDQISSQPYVLRYAAKFYRRKNSWNKALELLKKALEVTP 280
Cdd:COG4783 93 ALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDP 137
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
144-369 |
4.89e-10 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 60.02 E-value: 4.89e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6912630 144 KGWALLKFGgkYYQKAKAAFEKALEVEPDNPEFNIGYAITVYRLDDsdREGSVKSFslgplRKAVTLNPDNSYIKVFLAL 223
Cdd:COG0457 14 LGLAYRRLG--RYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGR--YEEALADY-----EQALELDPDDAEALNNLGL 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6912630 224 KLQDVHAEAEGEKYIEEILDQISSQPYVLRYAAKFYRRKNSWNKALELLKKALEVTPTSSFLHHQMGLCYRAQMiQIKKA 303
Cdd:COG0457 85 ALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLG-RYEEA 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 6912630 304 THNRPKGKDKLKVDELISSAIFHFKAAMERDSMFAFAYTDLANMYAEGGQYSNAEDIFRKALRLEN 369
Cdd:COG0457 164 LELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALAL 229
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
208-472 |
1.78e-09 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 58.09 E-value: 1.78e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6912630 208 VTLNPDNSYIKVFLALKLQDVHAEAEGEKYIEEILDQISSQPYVLRYAAKFYRRKNSWNKALELLKKALEVTPTSSFLHH 287
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6912630 288 QMGLCYRAQmiqikkathNRPKGkdklkvdelissAIFHFKAAMERDSMFAFAYTDLANMYAEGGQYSNAEDIFRKALRL 367
Cdd:COG0457 81 NLGLALQAL---------GRYEE------------ALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALEL 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6912630 368 enitDDHKHQIHYHYGR-FQEFHRKSEntAIHHYLEALKVKDRSPLRTKLTSALKKLSTKRLCHNALDVQSLSALGFVYK 446
Cdd:COG0457 140 ----DPDDADALYNLGIaLEKLGRYEE--ALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAI 213
|
250 260
....*....|....*....|....*.
gi 6912630 447 LEGEKRQAAEYYEKAQKIDPENAEFL 472
Cdd:COG0457 214 LTLAALAELLLLALALLLALRLAALA 239
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
156-366 |
3.62e-09 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 57.82 E-value: 3.62e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6912630 156 YQKAKAAFEKALEVEPDNPEFNIGYAITVYRLDDSDRegsvksfSLGPLRKAVTLNPDNSYIKVFLALKLQDVHAEAEGE 235
Cdd:COG2956 92 LDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEK-------AIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAI 164
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6912630 236 KYIEEILDQISSQPYVLRYAAKFYRRKNSWNKALELLKKALEVTPTSSFLHHQMGLCYRAQmiqikkathNRPKGkdklk 315
Cdd:COG2956 165 EALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKL---------GDPEE----- 230
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 6912630 316 vdelissAIFHFKAAMERDSMFAFAYTdLANMYAEGGQYSNAEDIFRKALR 366
Cdd:COG2956 231 -------ALELLRKALELDPSDDLLLA-LADLLERKEGLEAALALLERQLR 273
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
232-368 |
8.36e-09 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 54.04 E-value: 8.36e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6912630 232 AEGEKYIEEILDQISSQPYVLRYAAKFYRRKNSWNKALELLKKALEVTPTSSFLHHQMGLCYRAQmiqikkathnrpkGK 311
Cdd:COG4783 21 DEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKA-------------GD 87
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 6912630 312 dklkvdelISSAIFHFKAAMERDSMFAFAYTDLANMYAEGGQYSNAEDIFRKALRLE 368
Cdd:COG4783 88 --------YDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELD 136
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
54-277 |
3.40e-08 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 54.24 E-value: 3.40e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6912630 54 YNLLAYVKHLKGQNKDALECLEQAEEIIQQEHsdkeevrslVTWGNYAWVYYHMDQLEEAQKYTGKIgnvckklsspSNY 133
Cdd:COG0457 11 YNNLGLAYRRLGRYEEAIEDYEKALELDPDDA---------EALYNLGLAYLRLGRYEEALADYEQA----------LEL 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6912630 134 KLECPETDCEKGWALLKFGgkYYQKAKAAFEKALEVEPDNPEFNIGYAITVYRLDDSDRegsvksfSLGPLRKAVTLNPD 213
Cdd:COG0457 72 DPDDAEALNNLGLALQALG--RYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDE-------AIEAYERALELDPD 142
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 6912630 214 NSYIKVFLALKLQDVHAEAEGEKYIEEILDQISSQPYVLRYAAKFYRRKNSWNKALELLKKALE 277
Cdd:COG0457 143 DADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQA 206
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
221-386 |
3.64e-08 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 55.77 E-value: 3.64e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6912630 221 LALKLQDVHAEAEGEKYIEEILDQISSQPYVLRYAAKFYRRKNSWNKALELLKKALEVTPTSSFLHHQMGLCYRAQmiqi 300
Cdd:COG3914 84 AALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRL---- 159
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6912630 301 kkathNRPkgkdklkvDElissAIFHFKAAMERDSMFAFAYTDLANMYAEGGQYSNAEDIFRKALRLEniTDDHKHQIHY 380
Cdd:COG3914 160 -----GRL--------EE----AIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELD--PDNADAHSNL 220
|
....*.
gi 6912630 381 HYGRFQ 386
Cdd:COG3914 221 LFALRQ 226
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
323-481 |
3.77e-08 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 54.24 E-value: 3.77e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6912630 323 AIFHFKAAMERDSMFAFAYTDLANMYAEGGQYSNAEDIFRKALRLenitDDHKHQIHYHYGR-FQEFHRKSEntAIHHYL 401
Cdd:COG0457 27 AIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALEL----DPDDAEALNNLGLaLQALGRYEE--ALEDYD 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6912630 402 EALKVkdrsplrtkltsalkklstkrlchNALDVQSLSALGFVYKLEGEKRQAAEYYEKAQKIDPENAEFLTALCELRLS 481
Cdd:COG0457 101 KALEL------------------------DPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEK 156
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
323-470 |
7.61e-08 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 51.16 E-value: 7.61e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6912630 323 AIFHFKAAMERDSMFAFAYTDLANMYAEGGQYSNAEDIFRKALRLenitDDHKHQIHYHYGRFQEFHRKSEnTAIHHYLE 402
Cdd:COG4235 2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRL----DPDNADALLDLAEALLAAGDTE-EAEELLER 76
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 6912630 403 ALKVkdrsplrtkltsalkklstkrlchNALDVQSLSALGFVYKLEGEKRQAAEYYEKAQKIDPENAE 470
Cdd:COG4235 77 ALAL------------------------DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAP 120
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
158-283 |
7.83e-08 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 51.16 E-value: 7.83e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6912630 158 KAKAAFEKALEVEPDNPEFNIGYAITVYRLDDSDRegsvksfSLGPLRKAVTLNPDNSYIKVFLALKLQDVHAEAEGEKY 237
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDE-------ALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEEL 73
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 6912630 238 IEEILDQISSQPYVLRYAAKFYRRKNSWNKALELLKKALEVTPTSS 283
Cdd:COG4235 74 LERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADA 119
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
157-470 |
8.46e-08 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 54.70 E-value: 8.46e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6912630 157 QKAKAAFEKALEVEPDNPEfnigyaiTVYRLDDSDREGSVKSFSLGPLRKAVTLNPDNSYIKVFLALKLQDVHAEAEGEK 236
Cdd:TIGR02917 618 NKAVSSFKKLLALQPDSAL-------ALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKK 690
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6912630 237 YIEEILDQISSQPYVLRYAAKFYRRKNSWNKALELLKKALEVTPTSSFLhhqMGLcYRAQMiqikkATHNRPKGKDKLkv 316
Cdd:TIGR02917 691 IAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNA---IKL-HRALL-----ASGNTAEAVKTL-- 759
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6912630 317 delissaifhfKAAMERDSMFAFAYTDLANMYAEGGQYSNAEDIFRKALRLenitddHKHQIHYHYGRFQEFHRKSENTA 396
Cdd:TIGR02917 760 -----------EAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKK------APDNAVVLNNLAWLYLELKDPRA 822
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 6912630 397 IHHYLEALKVKDRSPlrtkltsalkklstkrlchnaldvQSLSALGFVYKLEGEKRQAAEYYEKAQKIDPENAE 470
Cdd:TIGR02917 823 LEYAERALKLAPNIP------------------------AILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAA 872
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
151-475 |
8.61e-08 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 54.70 E-value: 8.61e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6912630 151 FGGKYYQKAKAAFEKALEVEPDNPE--FNIG-YAITVYRLDDS-DREGSV-----------------------KSFSLGP 203
Cdd:TIGR02917 476 LGKGDLAKAREAFEKALSIEPDFFPaaANLArIDIQEGNPDDAiQRFEKVltidpknlrailalaglylrtgnEEEAVAW 555
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6912630 204 LRKAVTLNPDNSYIKVFLALKLQDVHAEAEGEKYIEEILDQISSQPYVLRYAAKFYRRKNSWNKALELLKKALEVTPTSS 283
Cdd:TIGR02917 556 LEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSA 635
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6912630 284 FLHhqmglcyrAQMIQIKKATHNRPKgkdklkvdelissAIFHFKAAMERDSMFAFAYTDLANMYAEGGQYSNAEDIFRk 363
Cdd:TIGR02917 636 LAL--------LLLADAYAVMKNYAK-------------AITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAK- 693
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6912630 364 alRLENITDDHkHQIHYHYGRFQeFHRKSENTAIHHYLEALKVKDRSPLRTKLTSAL-----KKLSTKRLCH----NALD 434
Cdd:TIGR02917 694 --SLQKQHPKA-ALGFELEGDLY-LRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALlasgnTAEAVKTLEAwlktHPND 769
|
330 340 350 360
....*....|....*....|....*....|....*....|.
gi 6912630 435 VQSLSALGFVYKLEGEKRQAAEYYEKAQKIDPENAEFLTAL 475
Cdd:TIGR02917 770 AVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNL 810
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
332-480 |
2.54e-07 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 51.93 E-value: 2.54e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6912630 332 ERDSMFAFAYTDLANMYAEGGQYSNAEDIFRKALRLenitDDHKHQIHYHYGRFQEFHRKSENtAIHHYLEALKVKDRsp 411
Cdd:COG0457 2 ELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALEL----DPDDAEALYNLGLAYLRLGRYEE-ALADYEQALELDPD-- 74
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 6912630 412 lrtkltsalkklstkrlchnalDVQSLSALGFVYKLEGEKRQAAEYYEKAQKIDPENAEFLTALCELRL 480
Cdd:COG0457 75 ----------------------DAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALL 121
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
130-368 |
1.13e-06 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 51.14 E-value: 1.13e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6912630 130 PSNYKlECPETDCEKGWALLKFG--------GKYYQKAKAAFEKALEVEPDNPEFNIGYAIT-VYRLDDSDREGSvksfs 200
Cdd:TIGR00990 277 PAGLE-DSNELDEETGNGQLQLGlkspeskaDESYEEAARAFEKALDLGKLGEKEAIALNLRgTFKCLKGKHLEA----- 350
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6912630 201 LGPLRKAVTLNP--DNSYIKvfLALKLQDVHAEAEGEKYIEEILDQISSQPYVLRYAAKFYRRKNSWNKALELLKKALEV 278
Cdd:TIGR00990 351 LADLSKSIELDPrvTQSYIK--RASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL 428
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6912630 279 TPTSSFLHHQMG-LCYRAQMIQIKKATHNRPKGK----------------DKLKVDElissAIFHFKAAMERDSMFAFAY 341
Cdd:TIGR00990 429 DPDFIFSHIQLGvTQYKEGSIASSMATFRRCKKNfpeapdvynyygelllDQNKFDE----AIEKFDTAIELEKETKPMY 504
|
250 260 270
....*....|....*....|....*....|....
gi 6912630 342 TDLANMYAEG-------GQYSNAEDIFRKALRLE 368
Cdd:TIGR00990 505 MNVLPLINKAlalfqwkQDFIEAENLCEKALIID 538
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
156-244 |
1.46e-06 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 47.31 E-value: 1.46e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6912630 156 YQKAKAAFEKALEVEPDNPEFNIGYAITVYRLDDSDREGSVksfslgpLRKAVTLNPDNSYIKVFLALKLQDVHAEAEGE 235
Cdd:COG4235 33 YDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEEL-------LERALALDPDNPEALYLLGLAAFQQGDYAEAI 105
|
....*....
gi 6912630 236 KYIEEILDQ 244
Cdd:COG4235 106 AAWQKLLAL 114
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
246-405 |
1.48e-06 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 47.49 E-value: 1.48e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6912630 246 SSQPYVLRYAAKFYRRKNSWNKALELLKKALEVTPTSSFLHHQMGLCYRAQmiqikkathnrpkGkdklKVDElissAIF 325
Cdd:COG4783 1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQL-------------G----DLDE----AIV 59
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6912630 326 HFKAAMERDSMFAFAYTDLANMYAEGGQYSNAEDIFRKALRLenitdDHKH-QIHYHYGRFQEFHRKSENtAIHHYLEAL 404
Cdd:COG4783 60 LLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKL-----DPEHpEAYLRLARAYRALGRPDE-AIAALEKAL 133
|
.
gi 6912630 405 K 405
Cdd:COG4783 134 E 134
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
204-369 |
2.45e-06 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 49.99 E-value: 2.45e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6912630 204 LRKAVTLNPDNSYIKVFLALKLQDVHAEAEGEKYIEEILDQISSQPYVLRYAAKFYRRKNSWNKALELLKKALEVTPTSS 283
Cdd:COG3914 101 YRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNA 180
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6912630 284 FLHHQMGLCYRAQMiqikkathnrpkgkdklKVDElissAIFHFKAAMERDSMFAFAYTDLANMYAEGGQYSNAEDIFRK 363
Cdd:COG3914 181 EALNNLGNALQDLG-----------------RLEE----AIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDRFEEL 239
|
....*.
gi 6912630 364 ALRLEN 369
Cdd:COG3914 240 LAALAR 245
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
145-470 |
3.05e-06 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 49.70 E-value: 3.05e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6912630 145 GWALLKFGGkyYQKAKAAFEKALEVEPDNPEFNIGYAITvyRLDDSDREGSVKSfslgpLRKAVTLNPDNSYIKVFLALK 224
Cdd:TIGR02917 370 GEAYLALGD--FEKAAEYLAKATELDPENAAARTQLGIS--KLSQGDPSEAIAD-----LETAAQLDPELGRADLLLILS 440
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6912630 225 lqdvhaeaegekyieeildqissqpyvlryaakfYRRKNSWNKALELLKKALEVTPTSSFLHHqmglcYRAQMIQIKKat 304
Cdd:TIGR02917 441 ----------------------------------YLRSGQFDKALAAAKKLEKKQPDNASLHN-----LLGAIYLGKG-- 479
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6912630 305 hnrpkgkdklkvdeLISSAIFHFKAAMERDSMFAFAYTDLANMYAEGGQYSNAEDIFRKALRleniTDDHKHQIHYHYGR 384
Cdd:TIGR02917 480 --------------DLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLT----IDPKNLRAILALAG 541
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6912630 385 FQEFHRKSENTAIhhYLEALKVKDRSPLRTKLTSALKKLSTKRL------CHNALD-----VQSLSALGFVYKLEGEKRQ 453
Cdd:TIGR02917 542 LYLRTGNEEEAVA--WLEKAAELNPQEIEPALALAQYYLGKGQLkkalaiLNEAADaapdsPEAWLMLGRAQLAAGDLNK 619
|
330
....*....|....*..
gi 6912630 454 AAEYYEKAQKIDPENAE 470
Cdd:TIGR02917 620 AVSSFKKLLALQPDSAL 636
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
267-423 |
4.50e-06 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 46.15 E-value: 4.50e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6912630 267 KALELLKKALEVTPTSSFLHHQMGLCYRAQmiqikkathNRPKGkdklkvdelissAIFHFKAAMERDSMFAFAYTDLAN 346
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRL---------GRYDE------------ALAAYEKALRLDPDNADALLDLAE 59
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 6912630 347 MYAEGGQYSNAEDIFRKALRLenitdDHKH-QIHYHYGRFQeFHRKSENTAIHHYLEALKVKDRSPLRTKLTSALKKL 423
Cdd:COG4235 60 ALLAAGDTEEAEELLERALAL-----DPDNpEALYLLGLAA-FQQGDYAEAIAAWQKLLALLPADAPARLLEASIAEA 131
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
158-481 |
5.30e-06 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 48.93 E-value: 5.30e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6912630 158 KAKAAFEKALEVEPDNPEFNIG---YAITVYRLDDS----------------------DREGSVKSF--SLGPLRKAVTL 210
Cdd:TIGR02917 143 LAQKSYEQALAIDPRSLYAKLGlaqLALAENRFDEAralidevltadpgnvdalllkgDLLLSLGNIelALAAYRKAIAL 222
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6912630 211 NPDNSYIKVFLALKLQDVHAEAEGEKYIEEILDQISSQPYVLRYAAKFYRRKNSWNKALELLKKALEVTP---------- 280
Cdd:TIGR02917 223 RPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPeylpalllag 302
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6912630 281 TSSFLHHQMGLCYrAQMIQIKKATHNRPKGKDKLKVDEL----ISSAIFHFKAAMERDSMFAFAYTDLANMYAEGGQYSN 356
Cdd:TIGR02917 303 ASEYQLGNLEQAY-QYLNQILKYAPNSHQARRLLASIQLrlgrVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEK 381
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6912630 357 AEDIFRKALRLENITDDHKHQIhyhyGRFQEFHRKSENtAIHHYLEALKVKDRSP----------LRT----KLTSALKK 422
Cdd:TIGR02917 382 AAEYLAKATELDPENAAARTQL----GISKLSQGDPSE-AIADLETAAQLDPELGradlllilsyLRSgqfdKALAAAKK 456
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 6912630 423 LSTKR----LCHNaldvqslsALGFVYKLEGEKRQAAEYYEKAQKIDPENAEFLTALCELRLS 481
Cdd:TIGR02917 457 LEKKQpdnaSLHN--------LLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQ 511
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
259-368 |
5.51e-06 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 44.78 E-value: 5.51e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6912630 259 YRRKNSWNKALELLKKALEVTPTSSFLHHQMGLCYRAQmiqikkathnrpkgkdkLKVDELISsaifhFKAAMERDSMFA 338
Cdd:COG3063 2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQ-----------------GRYDEAIA-----LEKALKLDPNNA 59
|
90 100 110
....*....|....*....|....*....|
gi 6912630 339 FAYTDLANMYAEGGQYSNAEDIFRKALRLE 368
Cdd:COG3063 60 EALLNLAELLLELGDYDEALAYLERALELD 89
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
204-370 |
1.20e-05 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 45.34 E-value: 1.20e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6912630 204 LRKAVTLNPDNSYIKVFLALKLQDVHAEAEGEKYIEEILDQISSQPYVLRYAAKFYRRKNSWNKALELLKKALEVTPTSS 283
Cdd:COG5010 9 RLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNP 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6912630 284 FLHHQMGLCYRAQmiqikkathNRPKGkdklkvdelissAIFHFKAAMERDSMFAFAYTDLANMYAEGGQYSNAEDIFRK 363
Cdd:COG5010 89 ELYYNLALLYSRS---------GDKDE------------AKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQR 147
|
....*..
gi 6912630 364 ALRLENI 370
Cdd:COG5010 148 ALGTSPL 154
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
48-316 |
1.73e-05 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 47.30 E-value: 1.73e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6912630 48 KSRLALYNLLAYVKHLKGQNKDALECLEQAEEIIQQEHSDKEEvrslvtwgNYAWVYYHMDQLEEAQKYTGKIGNVCKKL 127
Cdd:COG3914 34 AAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLL--------LAALLELAALLLQALGRYEEALALYRRAL 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6912630 128 S-SPSNyklecPETDCEKGWALLKFGgkYYQKAKAAFEKALEVEPDNPEFNIGYAITVYRLDDSDregsvksFSLGPLRK 206
Cdd:COG3914 106 AlNPDN-----AEALFNLGNLLLALG--RLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLE-------EAIAALRR 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6912630 207 AVTLNPDNSYIKVFLALKLQDVHAEAEGEKYIEEILDQISSQPYVLRYAAKFYRRKNSWNKALELLK-----KALEVTPT 281
Cdd:COG3914 172 ALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDRFEEllaalARGPSELS 251
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 6912630 282 SSFLHHQMGL-------CYR--AQMIQIK-----KATHNRPKGKDKLKV 316
Cdd:COG3914 252 PFALLYLPDDdpaellaLARawAQLVAAAaapelPPPPNPRDPDRKLRI 300
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
49-116 |
4.16e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 41.60 E-value: 4.16e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 6912630 49 SRLALYNLLAYVKHLKGQNKDALECLEQAEEIIQQEHsDKEEVRSLVTWGNYAWVYYHMDQLEEAQKY 116
Cdd:pfam13424 1 DVATALNNLAAVLRRLGRYDEALELLEKALEIARRLL-GPDHPLTATTLLNLGRLYLELGRYEEALEL 67
|
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
147-466 |
4.28e-05 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 45.29 E-value: 4.28e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6912630 147 ALLKFGGKYYQKAKAAFEKALEVEPDNPEFNIGYAITVYRLDDSDRegsvksfSLGPLRKAVTLNPDNS----YIKVFLA 222
Cdd:COG3071 23 GLLALAEGRYARAEKLLSKAAEHSEAPLLAYLLAARAAQALGDYER-------RDEYLAQALELAPEAElavlLTRAELL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6912630 223 LKLQDVHaeaEGEKYIEEILDQISSQPYVLRYAAKFYRRKNSWNKALEL---LKKALEVTPTssflhHQMGLCYRAQMIQ 299
Cdd:COG3071 96 LDQGQAE---QALATLEALRAGAPRHPQVLRLLLQAYRQLGDWEELLELlpaLRKHKALSAE-----EAQALERRAYLGL 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6912630 300 IKKATHnrpkGKDKLKvdelisSAIFHFKAAMERDSMFAFAYtdlANMYAEGGQYSNAEDIFRKALrlenitddhkhqih 379
Cdd:COG3071 168 LRQAAR----DAEALK------ALWKALPRAERRDPELAAAY---ARALIALGDHDEAERLLREAL-------------- 220
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6912630 380 yhygrfqefhRKSENTAIHHYLEALKVKDRSPLRTKLTSALKKlstkrlchNALDVQSLSALGFVYKLEGEKRQAAEYYE 459
Cdd:COG3071 221 ----------KRQWDPRLVRLYGRLQGGDPAKQLKRAEKWLKK--------HPNDPDLLLALGRLCLRNQLWGKAREYLE 282
|
....*..
gi 6912630 460 KAQKIDP 466
Cdd:COG3071 283 AALALRP 289
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
323-461 |
6.22e-05 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 44.14 E-value: 6.22e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6912630 323 AIFHFKAAMERDSMFAFAYTDLANMYAEGGQYSNAEDIFRKALRLEnitDDH------KHQIHYHYGRFQEfhrksentA 396
Cdd:COG4785 92 AIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELD---PDYayaylnRGIALYYLGRYEL--------A 160
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 6912630 397 IHHYLEALKVKDRSPLRTKLTSalkkLSTKRLCHNALDVQSLSALGFVYKLEGEKRQAAEYYEKA 461
Cdd:COG4785 161 IADLEKALELDPNDPERALWLY----LAERKLDPEKALALLLEDWATAYLLQGDTEEARELFKLA 221
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
337-475 |
2.67e-04 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 42.79 E-value: 2.67e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6912630 337 FAFAYTDLANMYAEGGQYSNAEDIFRKALRLenitDDHKHQIHYHYGRFqeFHRKSENT-AIHHYLEALKVKDRSP---- 411
Cdd:COG2956 7 AALGWYFKGLNYLLNGQPDKAIDLLEEALEL----DPETVEAHLALGNL--YRRRGEYDrAIRIHQKLLERDPDRAeall 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6912630 412 ------LRTKLTSALKKLSTKRLCHNALDVQSLSALGFVYKLEGEKRQAAEYYEKAQKIDPENAEFLTAL 475
Cdd:COG2956 81 elaqdyLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCEL 150
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
163-481 |
2.86e-04 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 43.53 E-value: 2.86e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6912630 163 FEKALEVEPDNPEFNIGYAiTVYrLDDSDREGSVKSfslgpLRKAVTLNPDNSYIKVFLAL------KLQDVHAEAEGEK 236
Cdd:TIGR02917 45 LKNALQKDPNDAEARFLLG-KIY-LALGDYAAAEKE-----LRKALSLGYPKNQVLPLLARayllqgKFQQVLDELPGKT 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6912630 237 yieeiLDQISSQPYVLRYAAKFYRRKNSWNKALELLKKALEVTPTssFLHHQMGLCYRAqmiqikkATHNRPKGKDKLkV 316
Cdd:TIGR02917 118 -----LLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPR--SLYAKLGLAQLA-------LAENRFDEARAL-I 182
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6912630 317 DELISSAIFHFKA-----------------------AMERDSMFAFAYTDLANMYAEGGQYSNAE---DIFRKALRLENI 370
Cdd:TIGR02917 183 DEVLTADPGNVDAlllkgdlllslgnielalaayrkAIALRPNNIAVLLALATILIEAGEFEEAEkhaDALLKKAPNSPL 262
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6912630 371 TDDHKHQIHYHYGRFQ--------------------------EFHRKSENTAIHHYLEALKVKDRSPLRTKLTsALKKLS 424
Cdd:TIGR02917 263 AHYLKALVDFQKKNYEdaretlqdalksapeylpalllagasEYQLGNLEQAYQYLNQILKYAPNSHQARRLL-ASIQLR 341
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 6912630 425 TKR-----------LCHNALDVQSLSALGFVYKLEGEKRQAAEYYEKAQKIDPENAEFLTALCELRLS 481
Cdd:TIGR02917 342 LGRvdeaiatlspaLGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLS 409
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
434-475 |
2.93e-04 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 40.76 E-value: 2.93e-04
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 6912630 434 DVQSLSALGFVYKLEGEKRQAAEYYEKAQKIDPENAEFLTAL 475
Cdd:COG4235 16 DAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDL 57
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
338-475 |
3.98e-04 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 40.56 E-value: 3.98e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6912630 338 AFAYTDLANMYAEGGQYSNAEDIFRKALRLenitDDHKHQIHYHYGRFQeFHRKSENTAIHHYLEALKVkdrsplrtklt 417
Cdd:COG4783 4 AEALYALAQALLLAGDYDEAEALLEKALEL----DPDNPEAFALLGEIL-LQLGDLDEAIVLLHEALEL----------- 67
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 6912630 418 salkklstkrlchNALDVQSLSALGFVYKLEGEKRQAAEYYEKAQKIDPENAEFLTAL 475
Cdd:COG4783 68 -------------DPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRL 112
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
156-243 |
8.81e-04 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 38.61 E-value: 8.81e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6912630 156 YQKAKAAFEKALEVEPDNPEFNIGYAITVYRLDDSDRegsvksfsLGPLRKAVTLNPDNSYIKVFLALKLQDVHAEAEGE 235
Cdd:COG3063 8 LEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDE--------AIALEKALKLDPNNAEALLNLAELLLELGDYDEAL 79
|
....*...
gi 6912630 236 KYIEEILD 243
Cdd:COG3063 80 AYLERALE 87
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
259-367 |
1.90e-03 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 39.90 E-value: 1.90e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6912630 259 YRRKNSWNKALELLKKALEVTPTSSFLHHQMGLCYRAQMiqikkathnrpkgkdklKVDElissAIFHFKAAMERDSMFA 338
Cdd:COG4785 83 YDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLG-----------------DYDA----ALEDFDRALELDPDYA 141
|
90 100
....*....|....*....|....*....
gi 6912630 339 FAYTDLANMYAEGGQYSNAEDIFRKALRL 367
Cdd:COG4785 142 YAYLNRGIALYYLGRYELAIADLEKALEL 170
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
204-296 |
1.91e-03 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 38.45 E-value: 1.91e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6912630 204 LRKAVTLNPDNSYIKVFLALKLQDVHAEAEGEKYIEEILDQISSQPYVLRYAAKFYRRKNSWNKALELLKKALEVTPTSS 283
Cdd:COG4235 6 LRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNP 85
|
90
....*....|...
gi 6912630 284 FLHHQMGLCYRAQ 296
Cdd:COG4235 86 EALYLLGLAAFQQ 98
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
146-243 |
2.63e-03 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 40.45 E-value: 2.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6912630 146 WALLKfggKYYQKAKAAFEKALEVEPDNPEFNIGYAITVYRLDDSDRegsvksfSLGPLRKAVTLNPDNSYIKVFLALKL 225
Cdd:TIGR02917 812 WLYLE---LKDPRALEYAERALKLAPNIPAILDTLGWLLVEKGEADR-------ALPLLRKAVNIAPEAAAIRYHLALAL 881
|
90
....*....|....*...
gi 6912630 226 QDVHAEAEGEKYIEEILD 243
Cdd:TIGR02917 882 LATGRKAEARKELDKLLN 899
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
435-468 |
3.50e-03 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 35.11 E-value: 3.50e-03
10 20 30
....*....|....*....|....*....|....
gi 6912630 435 VQSLSALGFVYKLEGEKRQAAEYYEKAQKIDPEN 468
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
435-468 |
5.38e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 34.70 E-value: 5.38e-03
10 20 30
....*....|....*....|....*....|....
gi 6912630 435 VQSLSALGFVYKLEGEKRQAAEYYEKAQKIDPEN 468
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
|