|
Name |
Accession |
Description |
Interval |
E-value |
| ND2 |
MTH00070 |
NADH dehydrogenase subunit 2; Provisional |
4-260 |
1.19e-89 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177142 [Multi-domain] Cd Length: 346 Bit Score: 269.10 E-value: 1.19e-89
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691199676 4 TSTLSSIPLTIAICMKLGLAPLHFWMPEVLQGVPLMTGLILSTWQKIAPMSLLIQISQTTNMTLITTIGIASVLVGGWGG 83
Cdd:MTH00070 90 QTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLLSTLIGGWGG 169
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691199676 84 INQTQLRKIMAFSSIGHLGWMLIILKMNPSVTLFNFTIYIMMTSALFLTLMTMNVTKISQISTAWPKTPTLTTLSMLSLL 163
Cdd:MTH00070 170 LNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTLTSMMMLTLL 249
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691199676 164 SLGGLPPLSGFAPKLMTTLELTKQNALISAGTILLLSLLALFFYIRLTYTMSMTMAPNLTSSQTTWRSKLNKSPVVALTN 243
Cdd:MTH00070 250 SLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNKTNNLLSLTI 329
|
250
....*....|....*..
gi 691199676 244 LLSITILPMTSTIMILL 260
Cdd:MTH00070 330 ILSLMLLPITPTILNLF 346
|
|
| Proton_antipo_M |
pfam00361 |
Proton-conducting membrane transporter; This is a family of membrane transporters that ... |
2-131 |
1.29e-14 |
|
Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.
Pssm-ID: 425636 [Multi-domain] Cd Length: 291 Bit Score: 71.96 E-value: 1.29e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691199676 2 WSTSTLSSIPLTIAICMKLGLAPLHFWMPEVLQGVPLMTGLIL-STWQKIAP-----MSLLIQISQTTNMTLITTIGIAS 75
Cdd:pfam00361 78 SSGLLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLaATLVKAGGyglirRSLLYLPSSPFIQQILLILAIIS 157
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 691199676 76 VLVGGWGGINQTQLRKIMAFSSIGHLGWMLIIL----KMNPSVTLFNFTIYIMMTSALFL 131
Cdd:pfam00361 158 MLLGSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFL 217
|
|
| NuoN |
COG1007 |
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ... |
12-136 |
5.33e-13 |
|
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440631 [Multi-domain] Cd Length: 473 Bit Score: 68.22 E-value: 5.33e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691199676 12 LTIAICMKLGLAPLHFWMPEVLQGVPLMTGLILSTWQKIAPMSLLIQISQTTNM-------TLITTIGIASVLVGGWGGI 84
Cdd:COG1007 209 VLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALLRLLVEAFPglaadwqLLLAVLAVLSMTVGNLAAL 288
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 691199676 85 NQTQLRKIMAFSSIGHLGWMLIIL----KMNPSVTLFNFTIYIMMTSALFLTLMTM 136
Cdd:COG1007 289 AQTNVKRMLAYSSIAHAGYLLLGLaagtPLGVSAALFYLLAYLFMNLGAFAVILLL 344
|
|
| NDH_I_N |
TIGR01770 |
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ... |
14-257 |
1.85e-10 |
|
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]
Pssm-ID: 273795 [Multi-domain] Cd Length: 468 Bit Score: 60.35 E-value: 1.85e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691199676 14 IAICMKLGLAPLHFWMPEVLQGVPLMTGLILSTWQKIAPMSLLIQISQT-------TNMTLITTIGIASVLVGGWGGINQ 86
Cdd:TIGR01770 211 VGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLFLYilfgfseAWQIFLAIIAFLSMLIGNFGALAQ 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691199676 87 TQLRKIMAFSSIGHLGWMLIIL----KMNPSVTLFNFTIYIMMTSALFLTLMTMNVTK------ISQISTAWPKTPTLTT 156
Cdd:TIGR01770 291 KKVKRLLAYSSISHVGYILIGLlagtLEGIKAVLFYIFIYALMSLGAFGVLSLLRSYKdewieyISDFAGLFKTNPILAI 370
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691199676 157 LSMLSLLSLGGLPPLSGFAPKLMTTLELTKQNALISAGTILLLSLLALFFYIRLtyTMSMTMAPNLTSSQTTWRSKlNKS 236
Cdd:TIGR01770 371 LILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRV--VKVMYFDKPERRIPSNPQSK-AQS 447
|
250 260
....*....|....*....|.
gi 691199676 237 PVVALTNLLSITILPMTSTIM 257
Cdd:TIGR01770 448 LLLSISALFILFLGLFPSLIL 468
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| ND2 |
MTH00070 |
NADH dehydrogenase subunit 2; Provisional |
4-260 |
1.19e-89 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177142 [Multi-domain] Cd Length: 346 Bit Score: 269.10 E-value: 1.19e-89
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691199676 4 TSTLSSIPLTIAICMKLGLAPLHFWMPEVLQGVPLMTGLILSTWQKIAPMSLLIQISQTTNMTLITTIGIASVLVGGWGG 83
Cdd:MTH00070 90 QTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLLSTLIGGWGG 169
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691199676 84 INQTQLRKIMAFSSIGHLGWMLIILKMNPSVTLFNFTIYIMMTSALFLTLMTMNVTKISQISTAWPKTPTLTTLSMLSLL 163
Cdd:MTH00070 170 LNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTLTSMMMLTLL 249
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691199676 164 SLGGLPPLSGFAPKLMTTLELTKQNALISAGTILLLSLLALFFYIRLTYTMSMTMAPNLTSSQTTWRSKLNKSPVVALTN 243
Cdd:MTH00070 250 SLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNKTNNLLSLTI 329
|
250
....*....|....*..
gi 691199676 244 LLSITILPMTSTIMILL 260
Cdd:MTH00070 330 ILSLMLLPITPTILNLF 346
|
|
| ND2 |
MTH00135 |
NADH dehydrogenase subunit 2; Provisional |
4-260 |
7.43e-80 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177193 [Multi-domain] Cd Length: 347 Bit Score: 243.94 E-value: 7.43e-80
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691199676 4 TSTLSSIPLTIAICMKLGLAPLHFWMPEVLQGVPLMTGLILSTWQKIAPMSLLIQIsQTTNMTLITTIGIASVLVGGWGG 83
Cdd:MTH00135 90 SHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQI-APTNPTLLITLGLTSTLVGGWGG 168
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691199676 84 INQTQLRKIMAFSSIGHLGWMLIILKMNPSVTLFNFTIYIMMTSALFLTLMTMNVTKISQISTAWPKTPTLTTLSMLSLL 163
Cdd:MTH00135 169 LNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPALTALTPLILL 248
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691199676 164 SLGGLPPLSGFAPKLMTTLELTKQNALISAGTILLLSLLALFFYIRLTYTMSMTMAPNLTSSQTTWRSKLNKSPV-VALT 242
Cdd:MTH00135 249 SLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPSTQLTLpLAIS 328
|
250
....*....|....*...
gi 691199676 243 NLLSITILPMTSTIMILL 260
Cdd:MTH00135 329 TTATLMLLPLTPAILALL 346
|
|
| ND2 |
MTH00112 |
NADH dehydrogenase subunit 2; Provisional |
4-257 |
1.45e-71 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214423 [Multi-domain] Cd Length: 346 Bit Score: 222.78 E-value: 1.45e-71
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691199676 4 TSTLSSIPLTIAICMKLGLAPLHFWMPEVLQGVPLMTGLILSTWQKIAPMSLLIQISQTTNMTLITTIGIASVLVGGWGG 83
Cdd:MTH00112 90 TNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILSTLIGGWGG 169
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691199676 84 INQTQLRKIMAFSSIGHLGWMLIILKMNPSVTLFNFTIYIMMTSALFLTLMTMNVTKISQISTAWPKTPTLTTLSMLSLL 163
Cdd:MTH00112 170 LNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTLMLTLL 249
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691199676 164 SLGGLPPLSGFAPKLMTTLELTKQNALISAGTILLLSLLALFFYIRLTYTMSMTMAPNLTSSQTTWRSKLNKSPVVALTN 243
Cdd:MTH00112 250 SLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPKKNTLTATLT 329
|
250
....*....|....
gi 691199676 244 LLSITILPMTSTIM 257
Cdd:MTH00112 330 TLSTLLLPLSPMIL 343
|
|
| ND2 |
MTH00105 |
NADH dehydrogenase subunit 2; Provisional |
4-259 |
1.18e-66 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177167 [Multi-domain] Cd Length: 347 Bit Score: 210.47 E-value: 1.18e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691199676 4 TSTLSSIPLTIAICMKLGLAPLHFWMPEVLQGVPLMTGLILSTWQKIAPMSLLIQISQTTNMTLITTIGIASVLVGGWGG 83
Cdd:MTH00105 90 TNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAILSILIGGWGG 169
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691199676 84 INQTQLRKIMAFSSIGHLGWMLIILKMNPSVTLFNFTIYIMMTSALFLTLMTMNVTKISQISTAWPKTPTLTTLSMLSLL 163
Cdd:MTH00105 170 LNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLMTSLILLTLL 249
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691199676 164 SLGGLPPLSGFAPKLMTTLELTKQNALISAGTILLLSLLALFFYIRLTYTMSMTMAPNLTSSQTTWR-SKLNKSPVVALT 242
Cdd:MTH00105 250 SLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQfENTKPMTLLPTL 329
|
250
....*....|....*..
gi 691199676 243 NLLSITILPMTSTIMIL 259
Cdd:MTH00105 330 IILSTMLLPLTPMLSIL 346
|
|
| ND2 |
MTH00200 |
NADH dehydrogenase subunit 2; Provisional |
5-260 |
4.38e-53 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177246 [Multi-domain] Cd Length: 347 Bit Score: 175.54 E-value: 4.38e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691199676 5 STLSSIPLTIAICMKLGLAPLHFWMPEVLQGVPLMTGLILSTWQKIAPMSLLIQISQTTNMTLITTIGIASVLVGGWGGI 84
Cdd:MTH00200 91 GPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLLSVLVGGWGGL 170
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691199676 85 NQTQLRKIMAFSSIGHLGWMLIILKMNPSVTLFNFTIYIMMTSALFLTLMTMNVTKISQISTAWPKTPTLTTLSMLSLLS 164
Cdd:MTH00200 171 NQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPILSMLLGLTLLS 250
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691199676 165 LGGLPPLSGFAPKLMTTLELTKQNALISAGTILLLSLLALFFYIRLTYTMSMTMAPNLTSSQTTWRSKLNKSPVVALTNL 244
Cdd:MTH00200 251 LGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSNSNLLVGLLLL 330
|
250
....*....|....*.
gi 691199676 245 LSITILPMTSTIMILL 260
Cdd:MTH00200 331 LSILGLPLTPQLLFLF 346
|
|
| ND2 |
MTH00041 |
NADH dehydrogenase subunit 2; Validated |
5-247 |
5.04e-51 |
|
NADH dehydrogenase subunit 2; Validated
Pssm-ID: 177116 [Multi-domain] Cd Length: 349 Bit Score: 170.11 E-value: 5.04e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691199676 5 STLSSIPLTIAICMKLGLAPLHFWMPEVLQGVPLMTGLILSTWQKIAPMSLLIQISQTTNMTLITTIGIASVLVGGWGGI 84
Cdd:MTH00041 91 NTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGILSVLVGGWGGL 170
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691199676 85 NQTQLRKIMAFSSIGHLGWMLIILKMNPSVTLFNFTIYIMMTSALFLTLMTMNVTKISQISTAWPKTPTLTTLSMLSLLS 164
Cdd:MTH00041 171 NQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPISAFLFILSILS 250
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691199676 165 LGGLPPLSGFAPKLMTTLELTKQNALISAGTILLLSLLALFFYIRLTYTMSMTMAPNLTSSQTTWRSKLNKSPVVALTNL 244
Cdd:MTH00041 251 LGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSISLFSWRNSGNITVYGVILSI 330
|
...
gi 691199676 245 LSI 247
Cdd:MTH00041 331 LSS 333
|
|
| ND2 |
MTH00160 |
NADH dehydrogenase subunit 2; Provisional |
1-259 |
1.79e-27 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214442 [Multi-domain] Cd Length: 335 Bit Score: 107.99 E-value: 1.79e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691199676 1 IWSTSTLSSIPLTIAICMKLGLAPLHFWMPEVLQGVPLMTGLILSTWQKIAPMSLliqISQTTNMTLITTIGIASVLVGG 80
Cdd:MTH00160 82 LMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLIL---LSYLINNNFIIIIIILSAIIGA 158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691199676 81 WGGINQTQLRKIMAFSSIGHLGWMLIILKMNPSVTLFNFTIYIMMTSALFLTLMTMNVTKISQISTAWPKTPTLTTLSML 160
Cdd:MTH00160 159 IGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLLFL 238
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691199676 161 SLLSLGGLPPLSGFAPKLMTTLELTKQNALISAGTILLLSLLALFFYIRLTYTMSMTMAPNLTSSQTTwrSKLNKSPVVA 240
Cdd:MTH00160 239 NLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKK--KKNKFSLILN 316
|
250
....*....|....*....
gi 691199676 241 LTNLLSITILPMTSTIMIL 259
Cdd:MTH00160 317 FLSFISLFGLILSSLLFLL 335
|
|
| ND2 |
MTH00011 |
NADH dehydrogenase subunit 2; Validated |
2-248 |
5.39e-27 |
|
NADH dehydrogenase subunit 2; Validated
Pssm-ID: 164587 [Multi-domain] Cd Length: 330 Bit Score: 106.40 E-value: 5.39e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691199676 2 WSTSTLSSIP----LTIAICMKLGLAPLHFWMPEVLQGVPLMTGLILSTWQKIAPMSLLIQISQTTNMTLITTIGIASVL 77
Cdd:MTH00011 80 WSFPSLLKNItalmLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSAL 159
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691199676 78 VGGWGGINQTQLRKIMAFSSIGHLGWMLIILKMNPSVTLFNFTIYIMMTSALFLTLMTMNVTKISQISTAWPKTPTLTTL 157
Cdd:MTH00011 160 AGGLGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMS 239
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691199676 158 SMLSLLSLGGLPPLSGFAPKLMTTLELTKQNALISAGTILLLSLLALFFYIRLTYTmSMTMAPNLTSSQTTWRSKLNKSP 237
Cdd:MTH00011 240 LFIMLLSLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIFN-FMYLSPTFSSLKSAPYEPKTKIL 318
|
250
....*....|.
gi 691199676 238 VVALTNLLSIT 248
Cdd:MTH00011 319 ISMCTLSLGLI 329
|
|
| ND2 |
MTH00144 |
NADH dehydrogenase subunit 2; Provisional |
3-146 |
6.05e-25 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214432 [Multi-domain] Cd Length: 328 Bit Score: 100.73 E-value: 6.05e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691199676 3 STSTLSSIPLTIAICMKLGLAPLHFWMPEVLQGVPLMTGLILSTWQKIAPMSLLIQISQTTNM-TLITTIGIASVLVGGW 81
Cdd:MTH00144 81 SFSWFSMSLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLaYLLCVISVLSALVGSI 160
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 691199676 82 GGINQTQLRKIMAFSSIGHLGWMLIILKMNPSVTLFNFTIYIMMTSALFLTLMTMNVTKISQIST 146
Cdd:MTH00144 161 GGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKDLGS 225
|
|
| ND2 |
MTH00197 |
NADH dehydrogenase subunit 2; Provisional |
4-213 |
1.20e-24 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177244 [Multi-domain] Cd Length: 323 Bit Score: 100.13 E-value: 1.20e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691199676 4 TSTLSSIPLTIAICMKLGLAPLHFWMPEVLQGVPLMTGLILSTWQKIAPMSLLIQISQTTNMTLITtiGIASVLVGGWGG 83
Cdd:MTH00197 77 LSLLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNSSSFMGLLIC--SVLSSLIGGIGG 154
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691199676 84 INQTQLRKIMAFSSIGHLGWMLIILKMNPSVTLFNFTIYIMMTSALFLTLMTMNVTKISQISTAWPKTPTLTTLSMLSLL 163
Cdd:MTH00197 155 MNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLSFL 234
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 691199676 164 SLGGLPPLSGFAPKLMTTLELTKQNALISAGTILLLSLLALFFYIRLTYT 213
Cdd:MTH00197 235 SLGGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYK 284
|
|
| ND2 |
MTH00199 |
NADH dehydrogenase subunit 2; Provisional |
10-140 |
2.06e-16 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177245 [Multi-domain] Cd Length: 460 Bit Score: 78.13 E-value: 2.06e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691199676 10 IPLTIAICMKLGLAPLHFWMPEVLQGVPLMTGLILSTWQKIAPMSLLIQISQTTNMTLITtiGIASVLVGGWGGINQTQL 89
Cdd:MTH00199 194 ILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNVVLIC--AVLSIIYGAIGALNQTKI 271
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 691199676 90 RKIMAFSSIGHLGWMLIILKMNP----SVTLFNFTIYIMMTSALFLTLMTMNVTK 140
Cdd:MTH00199 272 KRLLAYSGIGHMGFILFGVAIGSfesiQASLIYMIIYVIMSICSFSIILSLKLTK 326
|
|
| ND2 |
MTH00196 |
NADH dehydrogenase subunit 2; Provisional |
8-140 |
1.11e-15 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214453 [Multi-domain] Cd Length: 365 Bit Score: 75.45 E-value: 1.11e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691199676 8 SSIPLTIAICMKLGLAPLHFWMPEVLQGVPLMTGLILSTWQKIAPMSLLIQISQTTNMTLIttIGIASVLVGGWGGINQT 87
Cdd:MTH00196 97 GYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIGLNVNILLI--GGLFSLFVGAIGALNQT 174
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 691199676 88 QLRKIMAFSSIGHLGWMLIILKMNP----SVTLFNFTIYIMMTSALFLTLMTMNVTK 140
Cdd:MTH00196 175 KIKRLLAYSGIGHMGFVLWGIEIGSfesiQASLVYLFIYIIMSICVFSIILALNVYK 231
|
|
| Proton_antipo_M |
pfam00361 |
Proton-conducting membrane transporter; This is a family of membrane transporters that ... |
2-131 |
1.29e-14 |
|
Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.
Pssm-ID: 425636 [Multi-domain] Cd Length: 291 Bit Score: 71.96 E-value: 1.29e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691199676 2 WSTSTLSSIPLTIAICMKLGLAPLHFWMPEVLQGVPLMTGLIL-STWQKIAP-----MSLLIQISQTTNMTLITTIGIAS 75
Cdd:pfam00361 78 SSGLLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLaATLVKAGGyglirRSLLYLPSSPFIQQILLILAIIS 157
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 691199676 76 VLVGGWGGINQTQLRKIMAFSSIGHLGWMLIIL----KMNPSVTLFNFTIYIMMTSALFL 131
Cdd:pfam00361 158 MLLGSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFL 217
|
|
| PRK05777 |
PRK05777 |
NADH-quinone oxidoreductase subunit NuoN; |
12-136 |
3.59e-13 |
|
NADH-quinone oxidoreductase subunit NuoN;
Pssm-ID: 235603 [Multi-domain] Cd Length: 476 Bit Score: 68.69 E-value: 3.59e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691199676 12 LTIAICMKLGLAPLHFWMPEVLQGVPLMTGLILSTWQKIAPMSLLIQI-------SQTTNMTLITTIGIASVLVGGWGGI 84
Cdd:PRK05777 210 LLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAVLLRLlvvafggLSEDWQQVLAIIAIASMLVGNLAAL 289
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 691199676 85 NQTQLRKIMAFSSIGHLGWMLIILKMNP----SVTLFNFTIYIMMTSALFLTLMTM 136
Cdd:PRK05777 290 SQTNIKRLLAYSSIAHAGYLLVGLAAGTaegySAVLFYLLAYLFMTLGAFGVISLL 345
|
|
| NuoN |
COG1007 |
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ... |
12-136 |
5.33e-13 |
|
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440631 [Multi-domain] Cd Length: 473 Bit Score: 68.22 E-value: 5.33e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691199676 12 LTIAICMKLGLAPLHFWMPEVLQGVPLMTGLILSTWQKIAPMSLLIQISQTTNM-------TLITTIGIASVLVGGWGGI 84
Cdd:COG1007 209 VLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALLRLLVEAFPglaadwqLLLAVLAVLSMTVGNLAAL 288
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 691199676 85 NQTQLRKIMAFSSIGHLGWMLIIL----KMNPSVTLFNFTIYIMMTSALFLTLMTM 136
Cdd:COG1007 289 AQTNVKRMLAYSSIAHAGYLLLGLaagtPLGVSAALFYLLAYLFMNLGAFAVILLL 344
|
|
| ND2 |
MTH00198 |
NADH dehydrogenase subunit 2; Provisional |
12-106 |
3.24e-12 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214454 [Multi-domain] Cd Length: 607 Bit Score: 66.04 E-value: 3.24e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691199676 12 LTIAICMKLGLAPLHFWMPEVLQGVPLMTGLILSTWQKIAPMSLLIQISQTTNMTLitTIGIASVLVGGWGGINQTQLRK 91
Cdd:MTH00198 305 ITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVYILLTSLVITSKLLL--SVAIISLVVGAFGALNQTRIKR 382
|
90
....*....|....*
gi 691199676 92 IMAFSSIGHLGWMLI 106
Cdd:MTH00198 383 LLAYSGIGHIGFILI 397
|
|
| NDH_I_N |
TIGR01770 |
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ... |
14-257 |
1.85e-10 |
|
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]
Pssm-ID: 273795 [Multi-domain] Cd Length: 468 Bit Score: 60.35 E-value: 1.85e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691199676 14 IAICMKLGLAPLHFWMPEVLQGVPLMTGLILSTWQKIAPMSLLIQISQT-------TNMTLITTIGIASVLVGGWGGINQ 86
Cdd:TIGR01770 211 VGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLFLYilfgfseAWQIFLAIIAFLSMLIGNFGALAQ 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691199676 87 TQLRKIMAFSSIGHLGWMLIIL----KMNPSVTLFNFTIYIMMTSALFLTLMTMNVTK------ISQISTAWPKTPTLTT 156
Cdd:TIGR01770 291 KKVKRLLAYSSISHVGYILIGLlagtLEGIKAVLFYIFIYALMSLGAFGVLSLLRSYKdewieyISDFAGLFKTNPILAI 370
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691199676 157 LSMLSLLSLGGLPPLSGFAPKLMTTLELTKQNALISAGTILLLSLLALFFYIRLtyTMSMTMAPNLTSSQTTWRSKlNKS 236
Cdd:TIGR01770 371 LILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRV--VKVMYFDKPERRIPSNPQSK-AQS 447
|
250 260
....*....|....*....|.
gi 691199676 237 PVVALTNLLSITILPMTSTIM 257
Cdd:TIGR01770 448 LLLSISALFILFLGLFPSLIL 468
|
|
| PRK06473 |
PRK06473 |
NADH-quinone oxidoreductase subunit M; |
3-106 |
1.50e-04 |
|
NADH-quinone oxidoreductase subunit M;
Pssm-ID: 235810 [Multi-domain] Cd Length: 500 Bit Score: 42.76 E-value: 1.50e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691199676 3 STSTLSSIPLTIAICMKLGLAPLHFWMPE-----------VLQGVPLMTG----------LILSTWQKIAPMslliqisq 61
Cdd:PRK06473 202 STQLLLLAPILVGFGIKIPLVPFHTWLPDahveastpvsvLLAGVLLKLGtygllrfgvgLFPEAWVYLAPW-------- 273
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 691199676 62 ttnmtlITTIGIASVLVGGWGGINQTQLRKIMAFSSIGHLGWMLI 106
Cdd:PRK06473 274 ------LATWAVVSVLYGASCAIAQKDMKKMVAYSSIGHMGYILL 312
|
|
| HyfB |
COG0651 |
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ... |
12-215 |
3.04e-04 |
|
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 440416 [Multi-domain] Cd Length: 430 Bit Score: 41.67 E-value: 3.04e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691199676 12 LTIAICMKLGLAPLHFWMPE-----------VLQGVPLMTGL--ILSTWQKIAPMSLLIQISqttnmTLITTIGIASVLV 78
Cdd:COG0651 211 LLVGFGIKAALFPLHFWLPDaypaapspvsaLLSGLLTKVGVyaILRVLTLLFGADPALFLG-----TLLLVLGLLTMLV 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691199676 79 GGWGGINQTQLRKIMAFSSIGHLGWMLIILKMNPSVTLFNFTIYI----MMTSALFLT----LMTMNVTKISQISTAWPK 150
Cdd:COG0651 286 GALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHLlnhaLAKALLFLAagaiERATGTRDLDKLGGLGKR 365
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 691199676 151 TPTLTTLSMLSLLSLGGLPPLSGFAPKLMTTLELTKQNALISAGTILLLSLLALFFYIRLTYTMS 215
Cdd:COG0651 366 MPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLAYFVRIFGRAQ 430
|
|
| PRK08676 |
PRK08676 |
hydrogenase membrane subunit; Validated |
6-117 |
7.15e-04 |
|
hydrogenase membrane subunit; Validated
Pssm-ID: 181537 [Multi-domain] Cd Length: 485 Bit Score: 40.51 E-value: 7.15e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691199676 6 TLSSIPLTIAICMKLGLAPLHFWMPEVLQGVP-----LMTGLILST-WQKIAPMSLLIQISQT--TNMTLITTIGIASVL 77
Cdd:PRK08676 206 GASFLFIFIGFLAKSGLVPFHTWLPAAYAKAPsvvsaLLSGTVLNIgIYGILRLSALLRQSGAaeQFSNVLIGLGIFSIA 285
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 691199676 78 VGGWGGINQTQLRKIMAFSSIGHLGWMLIILKMNPSVTLF 117
Cdd:PRK08676 286 VAAFSMLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPLALF 325
|
|
| ND5 |
MTH00032 |
NADH dehydrogenase subunit 5; Provisional |
25-132 |
1.72e-03 |
|
NADH dehydrogenase subunit 5; Provisional
Pssm-ID: 214407 [Multi-domain] Cd Length: 669 Bit Score: 39.56 E-value: 1.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691199676 25 LHFWMPEVLQGVPLMTGLILSTWQKIAPMSLLIQ---ISQTTNMTL--ITTIGIASVLVGGWGGINQTQLRKIMAFSSIG 99
Cdd:MTH00032 244 LHTWLPDAMEGPTPVSALIHAATMVTAGVFLMIRsfpLFEKAPLTLliITIFGALTAFFAATVGLVQNDLKKVIAYSTCS 323
|
90 100 110
....*....|....*....|....*....|....*
gi 691199676 100 HLGWMLIILKMNPS--VTLFNFTIYIMMTSALFLT 132
Cdd:MTH00032 324 QLGYMVLIIGIEGShnVGLFHLVNHAFFKALLFLS 358
|
|
| NDH_I_M |
TIGR01972 |
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ... |
14-112 |
1.82e-03 |
|
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]
Pssm-ID: 273903 [Multi-domain] Cd Length: 481 Bit Score: 39.15 E-value: 1.82e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691199676 14 IAICMKLGLAPLHFWMPEVLQGVPLMTGLILS-TWQKIAP-------MSLLIQISQTTnMTLITTIGIASVLVGGWGGIN 85
Cdd:TIGR01972 211 IAFAVKVPLFPLHTWLPDAHVEAPTAGSVILAgVLLKMGTygflrfnLPLFPDASLYF-APVLAALGVIAIIYGALIALA 289
|
90 100
....*....|....*....|....*...
gi 691199676 86 QTQLRKIMAFSSIGHLGWMLI-ILKMNP 112
Cdd:TIGR01972 290 QTDIKRLIAYSSISHMGFVLLgIFSFNE 317
|
|
| NuoM |
COG1008 |
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ... |
14-106 |
4.43e-03 |
|
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440632 [Multi-domain] Cd Length: 488 Bit Score: 38.14 E-value: 4.43e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691199676 14 IAICMKLGLAPLHFWMPEVLQ-----GVPLMTGLILstwqKIA-------PMSLLIQISQTtNMTLITTIGIASVLVGGW 81
Cdd:COG1008 217 IAFAVKVPMFPFHTWLPDAHVeaptaGSVLLAGVLL----KMGgygllrfALPLFPEASAY-FAPLLAALGVIGIIYGAL 291
|
90 100
....*....|....*....|....*
gi 691199676 82 GGINQTQLRKIMAFSSIGHLGWMLI 106
Cdd:COG1008 292 VALAQTDLKRLIAYSSVSHMGFVLL 316
|
|
| NuoL |
COG1009 |
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ... |
24-108 |
5.12e-03 |
|
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440633 [Multi-domain] Cd Length: 608 Bit Score: 37.82 E-value: 5.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691199676 24 PLHFWMPE-----------------VLQGVPLmtglilstwqkIAPMSLLIQISQTTnMTLITTIGIASVLVGGWGGINQ 86
Cdd:COG1009 229 PLHFWLPDamegptpvsallhaatmVKAGVYL-----------LARLSPLFALSPVW-LTVVAIIGAITALFAALIALAQ 296
|
90 100
....*....|....*....|..
gi 691199676 87 TQLRKIMAFSSIGHLGWMLIIL 108
Cdd:COG1009 297 TDIKRVLAYSTVSQLGYMFLAL 318
|
|
| NADH_dehy_S2_C |
pfam06444 |
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ... |
205-254 |
6.41e-03 |
|
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.
Pssm-ID: 461914 [Multi-domain] Cd Length: 51 Bit Score: 34.16 E-value: 6.41e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 691199676 205 FFYIRLTYTMSMTMAPNLTSSQTTWRSKLNK-SPVVALTNLLSITILPMTS 254
Cdd:pfam06444 1 FFYLRLSYSTTLTLFPNTNNSKMKWRFNSTKnTLLLPTLTTLSILLLPLTP 51
|
|
| PRK08376 |
PRK08376 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
12-106 |
6.93e-03 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 236252 [Multi-domain] Cd Length: 521 Bit Score: 37.38 E-value: 6.93e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691199676 12 LTIAICMKLGLAPLHFWMPEVLQGVPL-MTGLILSTWQ----KIAPMSLLI---QISQTTNMTLITTIGIASVLVGGWGG 83
Cdd:PRK08376 226 FIAGLAMKSGAVPVHMWLPDAYPAAPSsISAMLLVIKQaglyALARVLFSIygpAINLATVGWVIIILGCLTMFVGVAMA 305
|
90 100
....*....|....*....|...
gi 691199676 84 INQTQLRKIMAFSSIGHLGWMLI 106
Cdd:PRK08376 306 VVQKDVKRLLAYHSVSQIGYMLL 328
|
|
| PRK07363 |
PRK07363 |
NADH-quinone oxidoreductase subunit M; |
12-106 |
8.48e-03 |
|
NADH-quinone oxidoreductase subunit M;
Pssm-ID: 180945 [Multi-domain] Cd Length: 501 Bit Score: 37.38 E-value: 8.48e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691199676 12 LTIAICMKLGLAPLHFWMP----EVLQGVPLMTGLILS-----------------TWQKIAPMslliqisqttnmtlITT 70
Cdd:PRK07363 211 LLLGFGIKIPLVPLHTWLPdaytEASPAVAILLGGVLAklgtygllrfglqlfpqTWSLVAPG--------------LAI 276
|
90 100 110
....*....|....*....|....*....|....*.
gi 691199676 71 IGIASVLVGGWGGINQTQLRKIMAFSSIGHLGWMLI 106
Cdd:PRK07363 277 IGTISVIYGALSAIAQKDIKRMVAYSSIGHMGYILV 312
|
|
|