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Conserved domains on  [gi|691095311|ref|WP_032023545|]
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TetR/AcrR family transcriptional regulator, partial [Acinetobacter baumannii]

Protein Classification

TetR/AcrR family transcriptional regulator( domain architecture ID 11442015)

TetR/AcrR family transcriptional regulator may control genes involved in one of a variety of processes including antibiotic production, osmotic stress response, efflux pump expression, and multidrug resistance

CATH:  1.10.10.60|1.10.357.10
Gene Ontology:  GO:0003700|GO:0003677|GO:0006355
PubMed:  23602932
SCOP:  4000333

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
AcrR COG1309
DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA [Transcription];
1-131 1.00e-17

DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA [Transcription];


:

Pssm-ID: 440920 [Multi-domain]  Cd Length: 156  Bit Score: 74.16  E-value: 1.00e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691095311   1 TALELFNQIGYNATGVDKIIADSNVAKMTFYKYFPSKESLIMECLHHRNINIQNSIYEKLSLHpdvSPIDKIHLIFNWYI 80
Cdd:COG1309   14 AALELFAEKGYEGTSVRDIAARAGVSKGTLYRHFGSKEELLLAVLERLLEELLAALEEALAAE---DPRERLRALLRAYL 90

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 691095311  81 DWVNSENFNGCLfkkaFIEVSKQYTSIREPFQEYTNWLINLLNSLLVELDI 131
Cdd:COG1309   91 EFLAENPALARL----LLAEAAELPELRAALRALLRRLRALLAELLRAGGL 137
 
Name Accession Description Interval E-value
AcrR COG1309
DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA [Transcription];
1-131 1.00e-17

DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA [Transcription];


Pssm-ID: 440920 [Multi-domain]  Cd Length: 156  Bit Score: 74.16  E-value: 1.00e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691095311   1 TALELFNQIGYNATGVDKIIADSNVAKMTFYKYFPSKESLIMECLHHRNINIQNSIYEKLSLHpdvSPIDKIHLIFNWYI 80
Cdd:COG1309   14 AALELFAEKGYEGTSVRDIAARAGVSKGTLYRHFGSKEELLLAVLERLLEELLAALEEALAAE---DPRERLRALLRAYL 90

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 691095311  81 DWVNSENFNGCLfkkaFIEVSKQYTSIREPFQEYTNWLINLLNSLLVELDI 131
Cdd:COG1309   91 EFLAENPALARL----LLAEAAELPELRAALRALLRRLRALLAELLRAGGL 137
TetR_N pfam00440
Bacterial regulatory proteins, tetR family;
1-44 8.54e-11

Bacterial regulatory proteins, tetR family;


Pssm-ID: 425684 [Multi-domain]  Cd Length: 47  Bit Score: 53.18  E-value: 8.54e-11
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 691095311    1 TALELFNQIGYNATGVDKIIADSNVAKMTFYKYFPSKESLIMEC 44
Cdd:pfam00440   4 AARELFAERGYDATTVREIAKRAGVSKGALYRYFGSKEELLEAL 47
PRK15008 PRK15008
HTH-type transcriptional regulator RutR; Provisional
 2-47 1.77e-04

HTH-type transcriptional regulator RutR; Provisional


Pssm-ID: 184970 [Multi-domain]  Cd Length: 212  Bit Score: 39.53  E-value: 1.77e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*.
gi 691095311   2 ALELFNQIGYNATGVDKIIADSNVAKMTFYKYFPSKESLIMECLHH 47
Cdd:PRK15008  27 ALDTFSQFGFHGTRLEQIAELAGVSKTNLLYYFPSKEALYIAVLRQ 72
 
Name Accession Description Interval E-value
AcrR COG1309
DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA [Transcription];
1-131 1.00e-17

DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA [Transcription];


Pssm-ID: 440920 [Multi-domain]  Cd Length: 156  Bit Score: 74.16  E-value: 1.00e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691095311   1 TALELFNQIGYNATGVDKIIADSNVAKMTFYKYFPSKESLIMECLHHRNINIQNSIYEKLSLHpdvSPIDKIHLIFNWYI 80
Cdd:COG1309   14 AALELFAEKGYEGTSVRDIAARAGVSKGTLYRHFGSKEELLLAVLERLLEELLAALEEALAAE---DPRERLRALLRAYL 90

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 691095311  81 DWVNSENFNGCLfkkaFIEVSKQYTSIREPFQEYTNWLINLLNSLLVELDI 131
Cdd:COG1309   91 EFLAENPALARL----LLAEAAELPELRAALRALLRRLRALLAELLRAGGL 137
TetR_N pfam00440
Bacterial regulatory proteins, tetR family;
1-44 8.54e-11

Bacterial regulatory proteins, tetR family;


Pssm-ID: 425684 [Multi-domain]  Cd Length: 47  Bit Score: 53.18  E-value: 8.54e-11
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 691095311    1 TALELFNQIGYNATGVDKIIADSNVAKMTFYKYFPSKESLIMEC 44
Cdd:pfam00440   4 AARELFAERGYDATTVREIAKRAGVSKGALYRYFGSKEELLEAL 47
PRK15008 PRK15008
HTH-type transcriptional regulator RutR; Provisional
 2-47 1.77e-04

HTH-type transcriptional regulator RutR; Provisional


Pssm-ID: 184970 [Multi-domain]  Cd Length: 212  Bit Score: 39.53  E-value: 1.77e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*.
gi 691095311   2 ALELFNQIGYNATGVDKIIADSNVAKMTFYKYFPSKESLIMECLHH 47
Cdd:PRK15008  27 ALDTFSQFGFHGTRLEQIAELAGVSKTNLLYYFPSKEALYIAVLRQ 72
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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