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Conserved domains on  [gi|688074705|ref|YP_009059114|]
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NADH dehydrogenase subunit 6 (mitochondrion) [Filchnerella beicki]

Protein Classification

NADH dehydrogenase subunit 6( domain architecture ID 10009599)

NADH dehydrogenase subunit 6 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND6 MTH00166
NADH dehydrogenase subunit 6; Provisional
 3-173 6.73e-30

NADH dehydrogenase subunit 6; Provisional


:

Pssm-ID: 214445  Cd Length: 160  Bit Score: 106.81  E-value: 6.73e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074705   3 KMTIMSLSNALNINFIKLNHPMSMMMFIIIQTLLIGLTAGTLMESFWLAYILFLTFLGGMLVLFIYITSIASNEMFQLKS 82
Cdd:MTH00166   1 KMMLMMLLLILSIIFLFLNHPLSMGLILIIQTILISLLLGLMMKSFWFSYILFLIFLGGMLVLFIYITSLASNEKFKFSL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074705  83 ISVILTGIIWLILTISLILLDKSLYIdllknsdtsltTNNMNFQEMTMSLSKIYNNPTFMITMMMMIYLFLALLAVVKIT 162
Cdd:MTH00166  81 KLLILFLLMLLLMLNNFIKNSEMSNF-----------NNNFNFFENSFSLSKLYNFPTMLITLFMIIYLLLTLIVVVKIT 149

                        170
                 ....*....|.
gi 688074705 163 NINQGPIRKMS 173
Cdd:MTH00166 150 NIFKGPLRSKN 160
 
Name Accession Description Interval E-value
ND6 MTH00166
NADH dehydrogenase subunit 6; Provisional
 3-173 6.73e-30

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214445  Cd Length: 160  Bit Score: 106.81  E-value: 6.73e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074705   3 KMTIMSLSNALNINFIKLNHPMSMMMFIIIQTLLIGLTAGTLMESFWLAYILFLTFLGGMLVLFIYITSIASNEMFQLKS 82
Cdd:MTH00166   1 KMMLMMLLLILSIIFLFLNHPLSMGLILIIQTILISLLLGLMMKSFWFSYILFLIFLGGMLVLFIYITSLASNEKFKFSL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074705  83 ISVILTGIIWLILTISLILLDKSLYIdllknsdtsltTNNMNFQEMTMSLSKIYNNPTFMITMMMMIYLFLALLAVVKIT 162
Cdd:MTH00166  81 KLLILFLLMLLLMLNNFIKNSEMSNF-----------NNNFNFFENSFSLSKLYNFPTMLITLFMIIYLLLTLIVVVKIT 149

                        170
                 ....*....|.
gi 688074705 163 NINQGPIRKMS 173
Cdd:MTH00166 150 NIFKGPLRSKN 160
 
Name Accession Description Interval E-value
ND6 MTH00166
NADH dehydrogenase subunit 6; Provisional
 3-173 6.73e-30

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214445  Cd Length: 160  Bit Score: 106.81  E-value: 6.73e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074705   3 KMTIMSLSNALNINFIKLNHPMSMMMFIIIQTLLIGLTAGTLMESFWLAYILFLTFLGGMLVLFIYITSIASNEMFQLKS 82
Cdd:MTH00166   1 KMMLMMLLLILSIIFLFLNHPLSMGLILIIQTILISLLLGLMMKSFWFSYILFLIFLGGMLVLFIYITSLASNEKFKFSL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074705  83 ISVILTGIIWLILTISLILLDKSLYIdllknsdtsltTNNMNFQEMTMSLSKIYNNPTFMITMMMMIYLFLALLAVVKIT 162
Cdd:MTH00166  81 KLLILFLLMLLLMLNNFIKNSEMSNF-----------NNNFNFFENSFSLSKLYNFPTMLITLFMIIYLLLTLIVVVKIT 149

                        170
                 ....*....|.
gi 688074705 163 NINQGPIRKMS 173
Cdd:MTH00166 150 NIFKGPLRSKN 160
ND6 MTH00212
NADH dehydrogenase subunit 6; Provisional
 1-171 6.43e-10

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214460  Cd Length: 160  Bit Score: 55.01  E-value: 6.43e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074705   1 MMKMTIMSLSNALNINFIKLNHPMSMMMFIIIQTLLIGLTAgTLMESFWLAYILFLTFLGGMLVLFIYITSIASNEMFQL 80
Cdd:MTH00212   1 MLLSLLLSLLLLLMLLFPLSAHPLTLGVSLLLSSLLSCLII-TMESNSWYGYILFLIYIGGLLVLFGYMVALSPNEHLFF 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074705  81 KsisviltgiiwlILTISLILLDKSLYIDLLKNSDTSLTTNNMNFQEMTMSLSKIYNNPTFMITMMMMIYLFLALLAVVK 160
Cdd:MTH00212  80 K------------KYFKGFGMILISLNLYLLLMTLGSSNFSPMLNLKLELNVSKILSNNNIPILLFLGLILLIALLMVVK 147

                        170
                 ....*....|.
gi 688074705 161 ITNINQGPIRK 171
Cdd:MTH00212 148 ICQYYKGPLRP 158
ND6 MTH00152
NADH dehydrogenase subunit 6; Provisional
 1-170 9.89e-06

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214437  Cd Length: 163  Bit Score: 43.34  E-value: 9.89e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074705   1 MMKMTIMSLSNALNINFIKLNHPMSMMMFIIIQTLLIGLTAGtLMESFWLAYILFLTFLGGMLVLFIYITSIASNEMFQL 80
Cdd:MTH00152   1 MSLMILLSVCFSLFLLLPLSKQPLSLGLVLLLLSLFVCVEIG-LTLSSWYGYLLFLVYVGGLLVMFAYVVSLSPNPLFGS 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074705  81 KSISVILTGIIWLILTISLILLDKSLYIDLLKNSDTSLTTNNMNFQEMTMSLSKIYnnptfmITMMMMIYLFLALLAVVK 160
Cdd:MTH00152  80 NFKFVFFSLTLFGFLGLFFFFLYLYSSGGLSLSSLFDGSSGSLSFGGGLYSSSGWS------IFVFLAVLLLIVMVSVVK 153

                        170
                 ....*....|
gi 688074705 161 ITNINQGPIR 170
Cdd:MTH00152 154 ICYYEEGSLR 163
ND6 MTH00138
NADH dehydrogenase subunit 6; Provisional
 47-68 4.02e-03

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 177196  Cd Length: 173  Bit Score: 36.27  E-value: 4.02e-03
                         10        20
                 ....*....|....*....|..
gi 688074705  47 SFwLAYILFLTFLGGMLVLFIY 68
Cdd:MTH00138  49 SF-LSLVLFLIYLGGMLVVFAY 69
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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