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Conserved domains on  [gi|688074702|ref|YP_009059112|]
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NADH dehydrogenase subunit 4 (mitochondrion) [Filchnerella beicki]

Protein Classification

NADH dehydrogenase subunit 4( domain architecture ID 11475934)

NADH dehydrogenase subunit 4 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND4 MTH00163
NADH dehydrogenase subunit 4; Provisional
 1-444 6.40e-161

NADH dehydrogenase subunit 4; Provisional


:

Pssm-ID: 214443 [Multi-domain]  Cd Length: 445  Bit Score: 461.55  E-value: 6.40e-161
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702   1 MLKYLFMLIFMTPLCLIGNFWWLVHSLMFVVSFFFMIGVYSYSDLNMISWFFGVDYFSFGLILLSFWICSLMITASSSVY 80
Cdd:MTH00163   1 MLKFLFMLLFLIPLCFLKNSWWLVQSLLFLLSFLFMLLFSLSFYFSNISYFFGLDLLSFGLILLSFWICMLMILSSESVY 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702  81 LSSYHSSIFVFMVLFLMIMLYCSFSSLSLLSFYIFFEASLIPTLLLILGWGYQPERLQAGIYLIFYTLVASLPLLLVLFK 160
Cdd:MTH00163  81 KKNNYSNLFLFLILFLLIFLLLTFSSMNLLLFYIFFESSLIPTLFLILGWGYQPERLQAGIYLLFYTLFASLPLLVGIFY 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702 161 VYDCSYTLYFPLLSDFGSFYFLFYLFIILAFLIKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKVISF 240
Cdd:MTH00163 161 LYNNSGSLSFFLLNFFGSLNFLWYLSMILAFLVKMPMFFVHLWLPKAHVEAPVSGSMILAGVLLKLGGYGLLRVMSFFSK 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702 241 LGLSFNYFWLALGLSGGVVVSFICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLCLMIGHGLCSSGLFCLSNI 320
Cdd:MTH00163 241 LGLKFNYIWISISLVGGVIVSLICLRQVDLKSLIAYSSVAHMGLVLGGLMTFSYWGLMGSLLMMIGHGLCSSGLFCLANI 320

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702 321 IYERLGSRSLLINKGMINLMPSMALWWFLLSSSNMAAPPSLNLLGELGLLNSIISWSSLSFLTLMFLSFFSAVYTLYMYS 400
Cdd:MTH00163 321 IYERLGSRSLLINKGLLNFMPSMSLWWFLLSSSNMAAPPSLNLLGEISLINSLISWSKLSMIFLMLLSFFSAAYSLYLYS 400

                        410       420       430       440
                 ....*....|....*....|....*....|....*....|....
gi 688074702 401 YSQHGSYYGGVYTCSLGYIREYHLLLLHWLPLNILCLKGEYFFF 444
Cdd:MTH00163 401 YSQHGKYYSGLYSCSSGKVREYLLLFLHWLPLNLLILKSDLFML 444
 
Name Accession Description Interval E-value
ND4 MTH00163
NADH dehydrogenase subunit 4; Provisional
 1-444 6.40e-161

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214443 [Multi-domain]  Cd Length: 445  Bit Score: 461.55  E-value: 6.40e-161
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702   1 MLKYLFMLIFMTPLCLIGNFWWLVHSLMFVVSFFFMIGVYSYSDLNMISWFFGVDYFSFGLILLSFWICSLMITASSSVY 80
Cdd:MTH00163   1 MLKFLFMLLFLIPLCFLKNSWWLVQSLLFLLSFLFMLLFSLSFYFSNISYFFGLDLLSFGLILLSFWICMLMILSSESVY 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702  81 LSSYHSSIFVFMVLFLMIMLYCSFSSLSLLSFYIFFEASLIPTLLLILGWGYQPERLQAGIYLIFYTLVASLPLLLVLFK 160
Cdd:MTH00163  81 KKNNYSNLFLFLILFLLIFLLLTFSSMNLLLFYIFFESSLIPTLFLILGWGYQPERLQAGIYLLFYTLFASLPLLVGIFY 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702 161 VYDCSYTLYFPLLSDFGSFYFLFYLFIILAFLIKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKVISF 240
Cdd:MTH00163 161 LYNNSGSLSFFLLNFFGSLNFLWYLSMILAFLVKMPMFFVHLWLPKAHVEAPVSGSMILAGVLLKLGGYGLLRVMSFFSK 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702 241 LGLSFNYFWLALGLSGGVVVSFICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLCLMIGHGLCSSGLFCLSNI 320
Cdd:MTH00163 241 LGLKFNYIWISISLVGGVIVSLICLRQVDLKSLIAYSSVAHMGLVLGGLMTFSYWGLMGSLLMMIGHGLCSSGLFCLANI 320

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702 321 IYERLGSRSLLINKGMINLMPSMALWWFLLSSSNMAAPPSLNLLGELGLLNSIISWSSLSFLTLMFLSFFSAVYTLYMYS 400
Cdd:MTH00163 321 IYERLGSRSLLINKGLLNFMPSMSLWWFLLSSSNMAAPPSLNLLGEISLINSLISWSKLSMIFLMLLSFFSAAYSLYLYS 400

                        410       420       430       440
                 ....*....|....*....|....*....|....*....|....
gi 688074702 401 YSQHGSYYGGVYTCSLGYIREYHLLLLHWLPLNILCLKGEYFFF 444
Cdd:MTH00163 401 YSQHGKYYSGLYSCSSGKVREYLLLFLHWLPLNLLILKSDLFML 444
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 48-358 1.85e-51

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 180.66  E-value: 1.85e-51
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702  48 ISWFFGVDYFSFGLILLSFWICSLMITASSSVylSSYHSSIFVFMVLFLMIMLYCSFSSLSLLSFYIFFEASLIPTLLLI 127
Cdd:COG1008   74 ISYHLGVDGISLPLVLLTALLTPLAILASWNE--IKKRPKLYYALLLLLEAGMIGVFLALDLFLFYVFWELMLIPMYFLI 151

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702 128 LGWGYqPERLQAGIYLIFYTLVASLPLLLVLFKVYDCSYTLYFPLLS------DFGSFYFLFYLFIIlAFLIKMPMFLVH 201
Cdd:COG1008  152 GIWGG-ERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALTFDIAElaaaplPLTAQLLLFLAFFI-AFAVKVPMFPFH 229

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702 202 LWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMkvisfLGL------SFNYFWLALGLSGGVVVSFICFRQVDLKSLIA 275
Cdd:COG1008  230 TWLPDAHVEAPTAGSVLLAGVLLKMGGYGLLRFA-----LPLfpeasaYFAPLLAALGVIGIIYGALVALAQTDLKRLIA 304

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702 276 YSSVAHMSMVIGGLMTMNWWGCMGSLCLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMALWWFLLSSSNM 355
Cdd:COG1008  305 YSSVSHMGFVLLGIFALNPLGLQGAVLQMVSHGLITAALFLLVGVLYDRTHTRDIADLGGLAKRMPVLAALFLLAALASL 384


                 ...
gi 688074702 356 AAP 358
Cdd:COG1008  385 GLP 387
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 113-388 5.39e-50

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 171.34  E-value: 5.39e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702  113 YIFFEASLIPTLLLILGWGYQPERLQAGIYLIFYTLVASLPLLLVLFKVYDCSYTLYFPLLSDFGSFY------FLFYLF 186
Cdd:pfam00361   8 YLGWEAVLLPSYLLIGYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGGlnssglLLLFLL 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702  187 IILAFLIKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKVISFLGLSFNYFWLALGLSGGVVVSFICFR 266
Cdd:pfam00361  88 ILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVKAGGYGLIRRSLLYLPSSPFIQQILLILAIISMLLGSLAALV 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702  267 QVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLCLMIGHGLCSSGLFCLS-NIIYERLGSRSLLINKGMINLMPSMAL 345
Cdd:pfam00361 168 QTDIKRLLAYSSISHMGYMLIALGAGTIYGIQAAIFHLLTHGLFSAGLFLCAgSVIYRRVHTRNIRDYGGLAKTMPILAL 247

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|...
gi 688074702  346 WWFLLSSSNMAAPPSLNLLGELGLLNSIISWSSLSFLTLMFLS 388
Cdd:pfam00361 248 VFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVG 290
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 48-399 2.44e-43

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 158.56  E-value: 2.44e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702   48 ISWFFGVDYFSFGLILLSFWICSLMITASSSVYLSSYHSSIFVFMVLFLMIMlyCSFSSLSLLSFYIFFEASLIPTLLLI 127
Cdd:TIGR01972  69 ISYHLGVDGISLLLVLLTALLTLLAILASWESIQKRVKEFYALLLLLEAGVI--GVFLALDLFLFYVFWEAMLIPMYLLI 146

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702  128 LGWGyQPERLQAGIYLIFYTLVASLPLLL-VLFKVYDCSYTLYFPLLSD----FGSFYFLFYLFIIlAFLIKMPMFLVHL 202
Cdd:TIGR01972 147 GVWG-GPNRIYAAMKFFLYTLAGSLLMLLaILGLYFLGGGTFDLLELLNlplpFGVQTWLFLAFFI-AFAVKVPLFPLHT 224

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702  203 WLPKAHVEAPISGSMILAGVLLKLGGYGIFRV-MKVISFLGLSFNYFWLALGLSGGVVVSFICFRQVDLKSLIAYSSVAH 281
Cdd:TIGR01972 225 WLPDAHVEAPTAGSVILAGVLLKMGTYGFLRFnLPLFPDASLYFAPVLAALGVIAIIYGALIALAQTDIKRLIAYSSISH 304

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702  282 MSMVIGGLMTMNWWGCMGSLCLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMALWWFLLSSSNMAAPpsl 361
Cdd:TIGR01972 305 MGFVLLGIFSFNELGISGAVFQMISHGLITAALFLLVGVLYERAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLP--- 381

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|..
gi 688074702  362 nLLGELGLLNSIISWSSLSFLTLMFLS----FFSAVYTLYMY 399
Cdd:TIGR01972 382 -GTSGFVGEFLILLGSFKVNPVVAFLAalgiVLAAAYMLTLY 422
 
Name Accession Description Interval E-value
ND4 MTH00163
NADH dehydrogenase subunit 4; Provisional
 1-444 6.40e-161

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214443 [Multi-domain]  Cd Length: 445  Bit Score: 461.55  E-value: 6.40e-161
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702   1 MLKYLFMLIFMTPLCLIGNFWWLVHSLMFVVSFFFMIGVYSYSDLNMISWFFGVDYFSFGLILLSFWICSLMITASSSVY 80
Cdd:MTH00163   1 MLKFLFMLLFLIPLCFLKNSWWLVQSLLFLLSFLFMLLFSLSFYFSNISYFFGLDLLSFGLILLSFWICMLMILSSESVY 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702  81 LSSYHSSIFVFMVLFLMIMLYCSFSSLSLLSFYIFFEASLIPTLLLILGWGYQPERLQAGIYLIFYTLVASLPLLLVLFK 160
Cdd:MTH00163  81 KKNNYSNLFLFLILFLLIFLLLTFSSMNLLLFYIFFESSLIPTLFLILGWGYQPERLQAGIYLLFYTLFASLPLLVGIFY 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702 161 VYDCSYTLYFPLLSDFGSFYFLFYLFIILAFLIKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKVISF 240
Cdd:MTH00163 161 LYNNSGSLSFFLLNFFGSLNFLWYLSMILAFLVKMPMFFVHLWLPKAHVEAPVSGSMILAGVLLKLGGYGLLRVMSFFSK 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702 241 LGLSFNYFWLALGLSGGVVVSFICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLCLMIGHGLCSSGLFCLSNI 320
Cdd:MTH00163 241 LGLKFNYIWISISLVGGVIVSLICLRQVDLKSLIAYSSVAHMGLVLGGLMTFSYWGLMGSLLMMIGHGLCSSGLFCLANI 320

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702 321 IYERLGSRSLLINKGMINLMPSMALWWFLLSSSNMAAPPSLNLLGELGLLNSIISWSSLSFLTLMFLSFFSAVYTLYMYS 400
Cdd:MTH00163 321 IYERLGSRSLLINKGLLNFMPSMSLWWFLLSSSNMAAPPSLNLLGEISLINSLISWSKLSMIFLMLLSFFSAAYSLYLYS 400

                        410       420       430       440
                 ....*....|....*....|....*....|....*....|....
gi 688074702 401 YSQHGSYYGGVYTCSLGYIREYHLLLLHWLPLNILCLKGEYFFF 444
Cdd:MTH00163 401 YSQHGKYYSGLYSCSSGKVREYLLLFLHWLPLNLLILKSDLFML 444
ND4 MTH00150
NADH dehydrogenase subunit 4; Provisional
 47-443 5.59e-112

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214435 [Multi-domain]  Cd Length: 417  Bit Score: 335.66  E-value: 5.59e-112
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702  47 MISWFFGVDYFSFGLILLSFWICSLMITASSSVYLSSYHSSIFVFMVLFLMIMLYCSFSSLSLLSFYIFFEASLIPTLLL 126
Cdd:MTH00150  15 SLSELFSVDSMSSLLISLSLWISGLMMLASQKSVKLRNKSSSFSLLVLLLCLILVLAFSVSSLLMFYFFFEASLIPTLLL 94

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702 127 ILGWGYQPERLQAGIYLIFYTLVASLPLLLVL---FKVYDCSYTLYFPLLSDFGSFYFLFYLFIILAFLIKMPMFLVHLW 203
Cdd:MTH00150  95 ILGWGYQPERLQAGMYMMLYTVGASLPLLLVIlwmSSSYGSSFMLLISSLRKLLSSMGLWGLLVFLAFLVKLPMYPFHLW 174

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702 204 LPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKVISFLGLSFNYFWLALGLSGGVVVSFICFRQVDLKSLIAYSSVAHMS 283
Cdd:MTH00150 175 LPKAHVEAPVAGSMILAGILLKLGGYGILRMMMVFSLSSSSFSIFLISLSLWGGVLTSLICLRQSDVKSLIAYSSVGHMS 254

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702 284 MVIGGLMTMNWWGCMGSLCLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMALWWFLLSSSNMAAPPSLNL 363
Cdd:MTH00150 255 LVLAGVLSNTSWGWVGALIMMVSHGFCSSGLFCLANYTYEKVHSRSLFLSKGMLMLYPSLSLWWFLFCIINMAAPPSLNL 334

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702 364 LGELGLLNSIISWSSLSFLTLMFLSFFSAVYTLYMYSYSQHGSYYGGVYTCSLGYIREYHLLLLHWLPLNILCLKGEYFF 443
Cdd:MTH00150 335 LSEIMIFPSLISYSPWFFVPLGLMVFLSGLYSLYLYTSIQHGGSSSFLKPFNELKSSEMLLLLLHWVPLLLLILKSDLLF 414
ND4 MTH00014
NADH dehydrogenase subunit 4; Validated
 1-406 5.27e-110

NADH dehydrogenase subunit 4; Validated


Pssm-ID: 214399 [Multi-domain]  Cd Length: 452  Bit Score: 331.71  E-value: 5.27e-110
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702   1 MLKYLFMLIFMTPLCLIGNFWWLVHS---LMFVVSFFFMIGVYSYSDLNMISWFFGVDYFSFGLILLSFWICSLMITASS 77
Cdd:MTH00014   1 MLKLIMPLISLLLLPLIKYPWSWALTfstLLLLSLFTLLNLYPMSAPYSMFTESLSSDMLSAPLITLTLWITALMILASF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702  78 SVYLSSYHSSIFVFMVLFLMIMLYCSFSSLSLLSFYIFFEASLIPTLLLILGWGYQPERLQAGIYLIFYTLVASLPLLLV 157
Cdd:MTH00014  81 KIFQNNKAPKTFMTNILILNLILLLTFSASNLLMFYIFFEASLIPTLFLILGWGYQPERLQASFYLMIYTVTASLPLLMS 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702 158 LFKVYDCSYTLYFPLLS-DFGSFYF--LFYLFIILAFLIKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRV 234
Cdd:MTH00014 161 ILLIFYTNNSLSMLMSSmEPPSIYLmnLWWLITILAFMVKMPLYTVHLWLPKAHVEAPVAGSMILAGILLKLGGYGLLRM 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702 235 MKVISFLGLSFNYFWLALGLSGGVVVSFICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLCLMIGHGLCSSGL 314
Cdd:MTH00014 241 SSLFMHINKSLSAPFSSISLVGAVITSLICIRQPDLKSLIAYSSVGHMGLMTAGIMSNTSWGWQGALAMMIAHGLCSSAL 320

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702 315 FCLSNIIYERLGSRSLLINKGMINLMPSMALWWFLLSSSNMAAPPSLNLLGELGLLNSIISWSSLSFLTLMFLSFFSAVY 394
Cdd:MTH00014 321 FALANMTYETTHTRSLFLTKGLLSLFPTMTMWWFLLSAANMAAPPSINLLSEIMLLTSILSSSLSTAILLAITSFLAAAY 400

                        410
                 ....*....|..
gi 688074702 395 TLYMYSYSQHGS 406
Cdd:MTH00014 401 SLFLYTSTQHGS 412
ND4 MTH00205
NADH dehydrogenase subunit 4; Provisional
 1-444 2.04e-107

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214457 [Multi-domain]  Cd Length: 448  Bit Score: 325.01  E-value: 2.04e-107
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702   1 MLKYLFMLIFMTPLCLIGNFWWLVHSLMFVVSFFFMIGVYS-YSDLNMISWFFGVDYFSFGLILLSFWICSLMITASSSV 79
Cdd:MTH00205   1 MSIFGVFSLLIILFVLKFKDWSFFSNLLLIGLFFSSFFFSNsFLMTSFISSSFSFDSLSLPLIMLSFWISLLMVLASYKV 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702  80 YLSSYHSSIFVFMVLFLMIMLYCSFSSLSLLSFYIFFEASLIPTLLLILGWGYQPERLQAGIYLIFYTLVASLPLLLVLF 159
Cdd:MTH00205  81 FKSNKNSKLFTVSVIMLLLILILSFSVDNLLLFYITFEASLIPTLILILGWGYQPERLQASMYMMMYTLCASLPLLIGLF 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702 160 KVYDCSYTLYFPLLSDFGSFYFLFYLFII---LAFLIKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMK 236
Cdd:MTH00205 161 FLNSLNFSLSMFFNFPLNFSDFYLFLYWIflmLAFLVKLPMYFVHLWLPKAHVEAPVSGSMILAGVLLKLGGYGLIRITS 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702 237 VISFLGLSFNYFWLALGLSGGVVVSFICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLCLMIGHGLCSSGLFC 316
Cdd:MTH00205 241 MLYKLNSNFSELFFSISLWGGVMTGMICLRQVDLKSLIAYSSVGHMGLMVVGVFSNTSWGMNGAIIMMVAHGLCSSGMFA 320

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702 317 LSNIIYERLGSRSLLINKGMINLMPSMALWWFLLSSSNMAAPPSLNLLGELGLLNSIISWSSLSFLTLMFLSFFSAVYTL 396
Cdd:MTH00205 321 LANVNYERTNSRSMLMNKGVLNTFPFLVLMWFLLISCNMAAPPSLNLASEILLIMSLLSSSKISGIPLSLISFLSGAYSL 400

                        410       420       430       440
                 ....*....|....*....|....*....|....*....|....*...
gi 688074702 397 YMYSYSQHGSYYGGVYTCSLGYIREYHLLLLHWLPLNILCLKGEYFFF 444
Cdd:MTH00205 401 YLYSQSQHGKVSSQISSFLAISEREYYILILHWFPLNILILKLKIFIC 448
ND4 MTH00124
NADH dehydrogenase subunit 4; Provisional
 1-405 2.01e-102

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214427 [Multi-domain]  Cd Length: 457  Bit Score: 312.52  E-value: 2.01e-102
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702   1 MLKYLF---MLIFMTPLCLIGNFWWLVHSLMFVVSFFFMIGVY-SYSDLNMISWFFGVDYFSFGLILLSFWICSLMITAS 76
Cdd:MTH00124   1 MLKIILptiMLIPTTLLSKPKFLWTNTTTYSLLIALLSLQWLKpPYYPTKNLTQWLGIDQISAPLLVLSCWLLPLMILAS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702  77 SSVYLSSYHSS--IFVFMVLFLMIMLYCSFSSLSLLSFYIFFEASLIPTLLLILGWGYQPERLQAGIYLIFYTLVASLPL 154
Cdd:MTH00124  81 QNHLQHEPLQRkrTFLTTLILLQTFLILAFSATELTLFYIMFEATLIPTLILITRWGNQPERLSAGTYFLFYTLISSLPL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702 155 LLVLFKVYDCSYTLYFPLLSDFGSF------YFLFYLFIILAFLIKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGG 228
Cdd:MTH00124 161 LIAILYLHNQTGTLSLPMLQLTHPTltnswtNLLLWLACLMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILLKLGG 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702 229 YGIFRVMKVISFLGLSFNYFWLALGLSGGVVVSFICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLCLMIGHG 308
Cdd:MTH00124 241 YGIIRITLLLPPLSNTLHYPFLTLALWGALMTSLICLRQTDLKSLIAYSSVSHMGLVIAATMIQTPWSLSGAMILMIAHG 320

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702 309 LCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMALWWFLLSSSNMAAPPSLNLLGELGLLNSIISWSSLSFLTLMFLS 388
Cdd:MTH00124 321 LTSSMLFCLANTNYERTHSRTLLLTRGLQLLLPLMTTWWLLANLTNMALPPTINLMGELTIMTSLFNWSPTTIILTGLAT 400

                        410
                 ....*....|....*..
gi 688074702 389 FFSAVYTLYMYSYSQHG 405
Cdd:MTH00124 401 LITASYTLYMFLSTQRG 417
ND4 MTH00068
NADH dehydrogenase subunit 4; Provisional
 1-405 1.10e-98

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214417 [Multi-domain]  Cd Length: 458  Bit Score: 302.99  E-value: 1.10e-98
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702   1 MLKYLF---MLIFMTPLCLIGNFWWLVHSLMFVVSFFFMIGVYSYS-DLNMISWFFGVDYFSFGLILLSFWICSLMITAS 76
Cdd:MTH00068   1 MLKIIIptlMLLPTTWLSPKKWLWTLTTTNSLIIAFLSLMWFNLPSeTMNFTNKYFGIDQISSPLLILTCWLLPLMILAS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702  77 SSvYLSS---YHSSIFVFMVLFLMIMLYCSFSSLSLLSFYIFFEASLIPTLLLILGWGYQPERLQAGIYLIFYTLVASLP 153
Cdd:MTH00068  81 QN-HLKNepiNRQRTYISMLIILQLTLILAFSATELILFYIFFEATLIPTLIIITRWGNQEERLNAGTYFLFYTLAGSLP 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702 154 LLLVLFKVYDCSYTLYFPLLSDFGSFYF------LFYLFIILAFLIKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLG 227
Cdd:MTH00068 160 LLIALLILQNSLGSLSLILLELMSPMQLmtytnkIWWLACLLAFMVKMPLYGLHLWLPKAHVEAPIAGSMILAAVLLKLG 239

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702 228 GYGIFRVMKVISFLGLSFNYFWLALGLSGGVVVSFICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLCLMIGH 307
Cdd:MTH00068 240 GYGILRISILLTPLSKELSYPFIILALWGVLMTSLICLRQTDLKSLIAYSSVSHMGLVIAAALIQTPWSFSGAIILMISH 319

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702 308 GLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMALWWFLLSSSNMAAPPSLNLLGELGLLNSIISWSSLSFLTLMFL 387
Cdd:MTH00068 320 GLTSSALFCLANTNYERTHSRTLLLLRGAQTILPLMATWWLLSNLSNMALPPSPNLWGELTIMVSLFNWSNWTILITGLG 399

                        410
                 ....*....|....*...
gi 688074702 388 SFFSAVYTLYMYSYSQHG 405
Cdd:MTH00068 400 TLITAAYTLYMFLMTQRG 417
ND4 MTH00044
NADH dehydrogenase subunit 4; Validated
 6-406 2.05e-95

NADH dehydrogenase subunit 4; Validated


Pssm-ID: 214411 [Multi-domain]  Cd Length: 458  Bit Score: 294.58  E-value: 2.05e-95
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702   6 FMLIFMTPLCLIGNFWWLVHSLMFVVSFF--FMIGVYSYSDLNMISWFFGVDYFSFGLILLSFWICSLMITASSSV--YL 81
Cdd:MTH00044   9 LGIAITSWIVPKNKLWPISISQSSLISLLslFLLNNHWSSSWHNLSLSLATDSLSSPLIILSCWLAPLSLLASINHlsNN 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702  82 SSYHSSIFVFMVLFLMIMLYCSFSSLSLLSFYIFFEASLIPTLLLILGWGYQPERLQAGIYLIFYTLVASLPLLLVLFKV 161
Cdd:MTH00044  89 SPNNQRTFISLIIIILTALIITFSSLELILFYIAFETTLIPTLILITRWGAQKERIQAGLYFLFYTLFGSLPLLISLIAI 168

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702 162 YDCSYTLYFPL------LSDFGSFYFLFYLFIILAFLIKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVM 235
Cdd:MTH00044 169 YSSSSSLSIPLselnwlTSLSSNSSSIWWIFCILAFLVKMPIYGFHLWLPKAHVEAPVAGSMILAAILLKLGGYGLIRLI 248

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702 236 KVISFLGLSF-NYFWLALGLSGGVVVSFICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLCLMIGHGLCSSGL 314
Cdd:MTH00044 249 NLFSLPSANNiSFILIVFCCWGALITSIICLRQTDLKALIAYSSVGHMSLVAAGIFSGTNWGINGALILMIAHGLVSSAL 328

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702 315 FCLSNIIYERLGSRSLLINKGMINLMPSMALWWFLLSSSNMAAPPSLNLLGELGLLNSIISWSSLSFLTLMFLSFFSAVY 394
Cdd:MTH00044 329 FCLANILYERSGTRTLSITRGFKLITPLLPLWWLIFCAANLGLPPLPNLIGELLIISSIISWSILSFPIIGLATVFGAIY 408

                        410
                 ....*....|..
gi 688074702 395 TLYMYSYSQHGS 406
Cdd:MTH00044 409 SLLIYQLTNSGS 420
ND4 MTH00206
NADH dehydrogenase subunit 4; Provisional
 5-422 1.01e-93

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214458 [Multi-domain]  Cd Length: 450  Bit Score: 289.92  E-value: 1.01e-93
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702   5 LFMLIFMTPLCLIGNFWWLVHSLMFVVSFFFMIGVYSYSDLNMISW--FFGVDYFSFGLILLSFWICSLMITASSSVYLS 82
Cdd:MTH00206   6 LIMLLLMTILSKKKWLWRSTTFFSFLIALLFLLWFKWSSEVGWSFSnlYLSYDPLSSPLVILSCWLLPLMFLASQNHMKN 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702  83 SYHS--SIFVFMVLFLMIMLYCSFSSLSLLSFYIFFEASLIPTLLLILGWGYQPERLQAGIYLIFYTLVASLPLLLVLFK 160
Cdd:MTH00206  86 EPINrqRIYITLLIVLQLFLILFFSSSNLLLFYILFEASLIPTLLLITRWGNQKERLNAGYYFLFYTLIGSLPLLIALLF 165

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702 161 VYDCSYTLYFPLL---SDFGSFYFLFYLFIILAFLIKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKV 237
Cdd:MTH00206 166 LQNSLGSLSLYILyfsKLTTWNNNLWWLACILAFLVKLPLYGVHLWLPKAHVEAPVAGSMVLAGVLLKLGGYGMMRIILI 245

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702 238 ISFLGLSFNYFWLALGLSGGVVVSFICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLCLMIGHGLCSSGLFCL 317
Cdd:MTH00206 246 LGPSTKLSSYFFIILGLWGSIMTSSICLRQTDLKSLIAYSSVSHMSLVTAGILSGSPWGFKGALLLMIAHGLVSSALFCL 325

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702 318 SNIIYERLGSRSLLINKGMINLMPSMALWWFLLSSSNMAAPPSLNLLGELGLLNSIISWSSLSFLTLMFLSFFSAVYTLY 397
Cdd:MTH00206 326 ANLLYERSHTRTILGNRGLQMILPLLSFWWLLFFLANLGLPPFPNLFGELLIITSLFSWSNFTLPLLGLGFLFTAIYSLY 405

                        410       420
                 ....*....|....*....|....*
gi 688074702 398 MYSYSQHGSYYGGVYTCSLGYIREY 422
Cdd:MTH00206 406 MFVMTQHGKTPNHLLSLSPSSTREH 430
ND4 MTH00110
NADH dehydrogenase subunit 4; Provisional
 1-407 2.26e-91

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177172 [Multi-domain]  Cd Length: 459  Bit Score: 284.09  E-value: 2.26e-91
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702   1 MLKYLFMLIFMTPLCLIGNFWWL-----VHSLMFVVSFFFMIGVYSYSDLNMISWFFgVDYFSFGLILLSFWICSLMITA 75
Cdd:MTH00110   1 MLKIIIPTIMLIPLTWLSKNNMIwinttTYSLLISLISLLLLNQPNDNSLNFSLLFF-SDSLSTPLLILTTWLLPLMLMA 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702  76 SSSVYL--SSYHSSIFVFMVLFLMIMLYCSFSSLSLLSFYIFFEASLIPTLLLILGWGYQPERLQAGIYLIFYTLVASLP 153
Cdd:MTH00110  80 SQHHLSkePLTRKKLYITMLILLQLFLIMTFTATELIMFYILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLVGSLP 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702 154 LLLVLFKVYDCSYTLYFPLLS------DFGSFYFLFYLFIILAFLIKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLG 227
Cdd:MTH00110 160 LLVALLYIQNNLGSLNFLLLQlwaqplPNSWSNNLLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILLKLG 239

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702 228 GYGIFRVMKVISFLGLSFNYFWLALGLSGGVVVSFICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLCLMIGH 307
Cdd:MTH00110 240 GYGMMRITIILNPLTEFMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSFMGATALMIAH 319

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702 308 GLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMALWWFLLSSSNMAAPPSLNLLGELGLLNSIISWSSLSFLTLMFL 387
Cdd:MTH00110 320 GLTSSMLFCLANSNYERIHSRTMILARGLQTLLPLMATWWLLASLTNLALPPTINLIGELFVIMSSFSWSNITIILMGLN 399

                        410       420
                 ....*....|....*....|
gi 688074702 388 SFFSAVYTLYMYSYSQHGSY 407
Cdd:MTH00110 400 MLITALYSLYMLITTQRGKL 419
ND4 MTH00127
NADH dehydrogenase subunit 4; Provisional
 1-405 3.50e-80

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177186 [Multi-domain]  Cd Length: 459  Bit Score: 255.27  E-value: 3.50e-80
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702   1 MLKYLFMLIFMTPLCLIGNFWWL-----VHSLMFVVSFFFMIGVYSYSDLNMISWFFGVDYFSFGLILLSFWICSLMITA 75
Cdd:MTH00127   1 MLKILIPTLMLIPTTWLTPAKWLwtttlAHSLLIALASLTWLKNLSETGWSSLNLYMATDPLSTPLLVLTCWLLPLMILA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702  76 SSSVYLSSYHSSIFVFMVLF--LMIMLYCSFSSLSLLSFYIFFEASLIPTLLLILGWGYQPERLQAGIYLIFYTLVASLP 153
Cdd:MTH00127  81 SQNHTAPEPINRQRMYITLLtsLQIFLILAFGATEIIMFYVMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLP 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702 154 LLLVLFKVYDCSYTL------YFPLLSDFGSFYFLFYLFIILAFLIKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLG 227
Cdd:MTH00127 161 LLVALLLLQNSTGTLsmltlqYSQPLQLSSWADKLWWAGCLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAAVLLKLG 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702 228 GYGIFRVMKVISFLGLSFNYFWLALGLSGGVVVSFICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLCLMIGH 307
Cdd:MTH00127 241 GYGMMRMMVMLDPLTKELSYPFIILALWGIIMTGSICLRQTDLKSLIAYSSVSHMGLVAGGILIQTPWGFTGALILMIAH 320

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702 308 GLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMALWWFLLSSSNMAAPPSLNLLGELGLLNSIISWSSLSFLTLMFL 387
Cdd:MTH00127 321 GLTSSALFCLANTNYERTHSRTMLLARGLQMILPLMATWWFIASLANLALPPLPNLMGELMIITSLFNWSPWTLALTGLG 400

                        410
                 ....*....|....*...
gi 688074702 388 SFFSAVYTLYMYSYSQHG 405
Cdd:MTH00127 401 TLITAGYSLYMFLMTQRG 418
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 48-358 1.85e-51

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 180.66  E-value: 1.85e-51
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702  48 ISWFFGVDYFSFGLILLSFWICSLMITASSSVylSSYHSSIFVFMVLFLMIMLYCSFSSLSLLSFYIFFEASLIPTLLLI 127
Cdd:COG1008   74 ISYHLGVDGISLPLVLLTALLTPLAILASWNE--IKKRPKLYYALLLLLEAGMIGVFLALDLFLFYVFWELMLIPMYFLI 151

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702 128 LGWGYqPERLQAGIYLIFYTLVASLPLLLVLFKVYDCSYTLYFPLLS------DFGSFYFLFYLFIIlAFLIKMPMFLVH 201
Cdd:COG1008  152 GIWGG-ERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALTFDIAElaaaplPLTAQLLLFLAFFI-AFAVKVPMFPFH 229

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702 202 LWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMkvisfLGL------SFNYFWLALGLSGGVVVSFICFRQVDLKSLIA 275
Cdd:COG1008  230 TWLPDAHVEAPTAGSVLLAGVLLKMGGYGLLRFA-----LPLfpeasaYFAPLLAALGVIGIIYGALVALAQTDLKRLIA 304

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702 276 YSSVAHMSMVIGGLMTMNWWGCMGSLCLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMALWWFLLSSSNM 355
Cdd:COG1008  305 YSSVSHMGFVLLGIFALNPLGLQGAVLQMVSHGLITAALFLLVGVLYDRTHTRDIADLGGLAKRMPVLAALFLLAALASL 384


                 ...
gi 688074702 356 AAP 358
Cdd:COG1008  385 GLP 387
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 113-388 5.39e-50

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 171.34  E-value: 5.39e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702  113 YIFFEASLIPTLLLILGWGYQPERLQAGIYLIFYTLVASLPLLLVLFKVYDCSYTLYFPLLSDFGSFY------FLFYLF 186
Cdd:pfam00361   8 YLGWEAVLLPSYLLIGYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGGlnssglLLLFLL 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702  187 IILAFLIKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKVISFLGLSFNYFWLALGLSGGVVVSFICFR 266
Cdd:pfam00361  88 ILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVKAGGYGLIRRSLLYLPSSPFIQQILLILAIISMLLGSLAALV 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702  267 QVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLCLMIGHGLCSSGLFCLS-NIIYERLGSRSLLINKGMINLMPSMAL 345
Cdd:pfam00361 168 QTDIKRLLAYSSISHMGYMLIALGAGTIYGIQAAIFHLLTHGLFSAGLFLCAgSVIYRRVHTRNIRDYGGLAKTMPILAL 247

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|...
gi 688074702  346 WWFLLSSSNMAAPPSLNLLGELGLLNSIISWSSLSFLTLMFLS 388
Cdd:pfam00361 248 VFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVG 290
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 52-397 6.74e-47

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 168.95  E-value: 6.74e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702  52 FGVDYFSFGLILLSFWI--CSLMITASSSVYLSSYhssiFVFMVLFLMIMLYCSFSSLSLLSFYIFFEASLIPTLLLILG 129
Cdd:MTH00226  98 FAVDGISIYFIILTGFIvpCSILISWHSVKYLTKS----FLICMLILEFLLYAVFSVLDIFMFYILFEGVLIPMYLILGI 173

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702 130 WGYQPERLQAGIYLIFYTLVASLPLLLVLFKVYDCSYTL-YFPLLSDF----GSFYFLFYLFIILAFLIKMPMFLVHLWL 204
Cdd:MTH00226 174 WGSREEKMQAAYYFFFYTLIGSVLMLLCLFSLYNIHGTTdYLTLASCShvvsEQTQKWIFLGIFLAMAVKIPIFPFHIWL 253

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702 205 PKAHVEAPISGSMILAGVLLKLGGYGIFRVMKVISFLGL-SFNYFWLALGLSGGVVVSFICFRQVDLKSLIAYSSVAHMS 283
Cdd:MTH00226 254 PKAHVEAPVAGSVLLAGILLKLGGYGLVRLSWPILPLGAqNLAPAVIAMGIVGIVYGSFATCRQIDVKRLVAYSSVAHMG 333

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702 284 MVIGGLMTMNWWGCMGSLCLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMALWWFLLSSSNMAAPPSLNL 363
Cdd:MTH00226 334 LVSITLVTHDIIGLTGSIFIMLAHGIVSSLLFILVTILYDRHHTRLIKYYRGLSITMPIWGTIMIVTSLANVAVPPSGNF 413

                        330       340       350
                 ....*....|....*....|....*....|....
gi 688074702 364 LGELGLLNSIISWSSLSFLTLMFLSFFSAVYTLY 397
Cdd:MTH00226 414 IGEYLSILSSFNWNPIIGVFVCSGVILSAVYSFY 447
ND4 MTH00204
NADH dehydrogenase subunit 4; Provisional
 53-399 1.96e-46

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 164750 [Multi-domain]  Cd Length: 485  Bit Score: 167.16  E-value: 1.96e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702  53 GVDYFSFGLILLSFWICsLMITASSSVYLSSYhssiFVFMVLFLMIMLYCSFSSLSLLSFYIFFEASLIPTLLLILGWGY 132
Cdd:MTH00204  83 GVSLFFILLTTLLIPIC-ILISWKSIKFLFKE----FLLCLLFLEVLLIGVFSVLDLLLFYILFEGILIPMFLLIGIWGS 157

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702 133 QPERLQAGIYLIFYTLVASLPLLLVLFKVYDCSYTL-YFPLLSDFGSFYFLFYLFI--ILAFLIKMPMFLVHLWLPKAHV 209
Cdd:MTH00204 158 REEKVRASYYFFFYTFAGSVFMLLGIFQLYSITGTTdYQILLNIKLPLSIQKWLLVgfFLSLAVKIPQIPFHIWLPQAHV 237

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702 210 EAPISGSMILAGVLLKLGGYGIFRVMKVIsFLGLSFNYFWLALGLSGGVVV--SFICFRQVDLKSLIAYSSVAHMSMVIG 287
Cdd:MTH00204 238 EAPVAGSVILAGILLKLGGYGFLRFSWPL-FPAASEYFAPLIVMLSVIAVIygSLTTCRQVDFKRLIAYSSVAHMGLVPL 316

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702 288 GLMTMNWWGCMGSLCLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMALWWFLLSSSNMAAPPSLNLLGEL 367
Cdd:MTH00204 317 GLFTHTIEGLVAAVFLMLAHGFVSSALFIAVTFLYERHHTRLIKYYRGLTLTMPLFVIIMLVLSLANMGFPLSCNFVGEF 396

                        330       340       350
                 ....*....|....*....|....*....|..
gi 688074702 368 GLLNSIISWSSLSFLTLMFLSFFSAVYTLYMY 399
Cdd:MTH00204 397 FSLLAAFEYSLGLGVLVTSGMVWSAAYSLYLY 428
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 48-344 4.01e-45

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 163.83  E-value: 4.01e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702  48 ISWFFGVDYFSFGLILLSFWICSLMITASSSVYLSSYHSsifvFMVLFLMI--MLYCSFSSLSLLSFYIFFEASLIPTLL 125
Cdd:PRK05846  74 ISYHLGVDGISLLLVVLTALLTPLAVLASWEEIKKRVKF----YMAALLWLegGVIGVFAALDLLLFYVFFEAMLIPMYF 149

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702 126 LILGWGYqPERLQAGIYLIFYTLVASLPLLLVLFkvydcsyTLYFPLLSDFGSF---------------YFLFYLFIIlA 190
Cdd:PRK05846 150 LIGVWGG-KNRIYAATKFFLYTLLGSLLMLVAII-------YLVVVYYNATGTFdiadllnlplppgvqYWLFLAFFI-A 220

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702 191 FLIKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKVIsFLGLS--FNYFWLALGLSGGVVVSFICFRQV 268
Cdd:PRK05846 221 FAVKMPMFPLHTWLPDAHVQAPTAGSVLLAGILLKMGAYGLLRFSLPL-FPDASheFAPIIITLGVIAIIYGALVALAQT 299

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 688074702 269 DLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLCLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMA 344
Cdd:PRK05846 300 DIKKLIAYSSISHMGFVTLGIFAGNQLGIQGAIFQMISHGLSSAALFLLVGVLYDRLHTRDIADYGGLAKVMPVLA 375
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 48-399 2.44e-43

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 158.56  E-value: 2.44e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702   48 ISWFFGVDYFSFGLILLSFWICSLMITASSSVYLSSYHSSIFVFMVLFLMIMlyCSFSSLSLLSFYIFFEASLIPTLLLI 127
Cdd:TIGR01972  69 ISYHLGVDGISLLLVLLTALLTLLAILASWESIQKRVKEFYALLLLLEAGVI--GVFLALDLFLFYVFWEAMLIPMYLLI 146

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702  128 LGWGyQPERLQAGIYLIFYTLVASLPLLL-VLFKVYDCSYTLYFPLLSD----FGSFYFLFYLFIIlAFLIKMPMFLVHL 202
Cdd:TIGR01972 147 GVWG-GPNRIYAAMKFFLYTLAGSLLMLLaILGLYFLGGGTFDLLELLNlplpFGVQTWLFLAFFI-AFAVKVPLFPLHT 224

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702  203 WLPKAHVEAPISGSMILAGVLLKLGGYGIFRV-MKVISFLGLSFNYFWLALGLSGGVVVSFICFRQVDLKSLIAYSSVAH 281
Cdd:TIGR01972 225 WLPDAHVEAPTAGSVILAGVLLKMGTYGFLRFnLPLFPDASLYFAPVLAALGVIAIIYGALIALAQTDIKRLIAYSSISH 304

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702  282 MSMVIGGLMTMNWWGCMGSLCLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMALWWFLLSSSNMAAPpsl 361
Cdd:TIGR01972 305 MGFVLLGIFSFNELGISGAVFQMISHGLITAALFLLVGVLYERAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLP--- 381

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|..
gi 688074702  362 nLLGELGLLNSIISWSSLSFLTLMFLS----FFSAVYTLYMY 399
Cdd:TIGR01972 382 -GTSGFVGEFLILLGSFKVNPVVAFLAalgiVLAAAYMLTLY 422
ND4 MTH00217
NADH dehydrogenase subunit 4; Provisional
 51-399 2.87e-43

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214462 [Multi-domain]  Cd Length: 482  Bit Score: 158.29  E-value: 2.87e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702  51 FFGVDYFS-FGLILLSFW--ICSLmITASSSVYLSSYhssiFVFMVLFLMIMLYCSFSSLSLLSFYIFFEASLIPTLLLI 127
Cdd:MTH00217  75 VFAVDGISiFFLILTALLtpICIL-ISWNSIKFLIKE----FLLCLLVIEILLMGVFTILDLVGFYILFEGILIPMFLII 149

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702 128 LGWGYQPERLQAGIYLIFYTLVASLPLLLVLFKVYD----CSYTLYFPLLSDFGSFYFLFYLFIiLAFLIKMPMFLVHLW 203
Cdd:MTH00217 150 GIWGSREEKVQASYYFFFYTFIGSVFMLLGIFTLYSyagtTDYQALCCLKIEKELQYFIFLGFF-LSLAIKIPKIPFHIW 228

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702 204 LPKAHVEAPISGSMILAGVLLKLGGYGIFRV-MKVISFLGLSFNYFWLALGLSGGVVVSFICFRQVDLKSLIAYSSVAHM 282
Cdd:MTH00217 229 LPQAHVEAPVAGSVILAGVLLKLGGYGFIRFsWPLLPEASEYFSPLIQTLSLLAIIYGSLTTCRQVDLKRIIAYSSVAHM 308

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702 283 SMVIGGLMTMNWWGCMGSLCLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMALWWFLLSSSNMAAPPSLN 362
Cdd:MTH00217 309 GLVTLGIFSHTIQGLVAAIFLMLAHGLVSSALFIAVTFLYERHHTRLIKYYRGMVITMPLFGILMLLLVLANASIPLSCN 388

                        330       340       350
                 ....*....|....*....|....*....|....*..
gi 688074702 363 LLGELGLLNSIISWSSLSFLTLMFLSFFSAVYTLYMY 399
Cdd:MTH00217 389 FVGEFLSLLAAFEYSYIVGVLASLGMVLSAGYSIYLY 425
ND4 MTH00094
NADH dehydrogenase subunit 4; Provisional
 33-418 4.42e-38

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177157 [Multi-domain]  Cd Length: 403  Bit Score: 142.74  E-value: 4.42e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702  33 FFFMIGVYSYSDLNMISWFFGVDYFSFGLILLsfwiCSLMITASSSVYLSSYHSSIFVFMVLFLMIMLYCSFSSLSLLSF 112
Cdd:MTH00094  12 FFLFLMFFSFLMFNNYSWSGLFFFFDSFVFVL----LIFMMVFILGLVLLSEKNFNLLILSNLLILICLLFFVSSNMLML 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702 113 YIFFEASLIPTLLLILGWGYQPERLQAGIYLIFYTLVASLPLLLVLFKVYDCSYTLYFPLLSDFGSFYFLfylfiILAFL 192
Cdd:MTH00094  88 YMFFELSMFPILIMILGYGSQIEKINSSYYLLFYAAFFSFPFLFVYLKNFFFFSLCYFDFFLSWEMFFIL-----SLSFM 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702 193 IKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKVISFLglsFNYFWLALGLSGGVVVSFICFRQVDLKS 272
Cdd:MTH00094 163 MKFPVYFLHLWLPKAHVEAPTTASMLLAGLLLKLGTAGFLRILGSLNFV---YNNFWIIFSLLGMILSSFCCVFQSDSKS 239

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702 273 LIAYSSVAHMSMVIGGLMTMNWWGCMGSLCLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMALWWFLLSS 352
Cdd:MTH00094 240 LAAYSSVTHMSFLLLSLVYMSMSGKLSGLMMMLAHGYTSTLMFYLIGEFYHISKSRLIYFMNSFFSSSMFFGLIFSLVFL 319

                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 688074702 353 SNMAAPPSLNLLGELGLLNSIISWSSLSFLTLMFLSFFSAVYTLYMYSYSQHGSYYGGVYTCSLGY 418
Cdd:MTH00094 320 SNSGVPPSLSFFSEFLIISNSFMKNKFSFFFIFFYFLVSFYYSLFLIVSSFMGKKFSNFNNFNVGL 385
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 48-341 4.91e-33

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 130.54  E-value: 4.91e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702  48 ISWFFGVDYFSFGLILLSFWICSLMITASSSVylsSYHSSIFvfmvLFLMIMLYCSFSSLS----LLSFYIFFEASLIPT 123
Cdd:PRK12561  51 LEWSLGVDGLSMPLVLLSGLITTLSIFASWKV---TRKPRLF----YFLMLVLYSAQIGVFlaqdLLLFFLMWELELVPV 123

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702 124 LLLILGWGYQpERLQAGIYLIFYTLVASLPLLL--VLFKVYDCSYTLYFPLLS--DF-GSFYFLFYLFIILAFLIKMPMF 198
Cdd:PRK12561 124 YLLISIWGGQ-KRLYAATKFILYTALASIFILVagLALALSGDTFTFDLAELGakSYpLALELLLYAGFLIAFGVKLPIF 202

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702 199 LVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRV-MKVISFLGLSFNYFWLALGLSGGVVVSFICFRQVDLKSLIAYS 277
Cdd:PRK12561 203 PLHTWLPDAHGEASAPVSMILAGVLLKMGGYALIRFnVQMLPDAHVYFAPALAILGVVNIIYGALNAFAQDNVKRRLAYS 282

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 688074702 278 SVAHMSMVIGGLMTMNWWGCMGSLCLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMP 341
Cdd:PRK12561 283 SVSHMGFVLLGIAAFTDLGISGAMLQMISHGLIAAALFFLTGVTYERTHTLSIPNMGGLAKVMP 346
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 52-359 1.81e-27

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 113.32  E-value: 1.81e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702  52 FGVDYFSFGLILLSFwICSLMITASSSVYLSSYHS-SIFVFMVLFLMIMLYCSFSSLSLLSFYIFFEASLIPTLLLILGW 130
Cdd:COG0651   72 LVADRLSALFLLLTA-LVALAVLLYSIGYMRHERRgRRFYPLFLLLLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALG 150

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702 131 GYqPERLQAGIYLIFYTLVASLPLLLVLFKVYDCSYTLYFPLLSDFGSFY-----FLFYLFIILAFLIKMPMFLVHLWLP 205
Cdd:COG0651  151 GT-KEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLAARLAELdpgllLAAFALLLVGFGIKAALFPLHFWLP 229

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702 206 KAHVEAPISGSMILAGVLLKLGGYGIFRVMKVI--SFLGLSFNYFWLALGLSGGVVVSFICFRQVDLKSLIAYSSVAHMS 283
Cdd:COG0651  230 DAYPAAPSPVSALLSGLLTKVGVYAILRVLTLLfgADPALFLGTLLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIG 309

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 688074702 284 MVIGGLMTMNWWGCMGSLCLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMALWWFLLSSSNMAAPP 359
Cdd:COG0651  310 YILLGLGLGTPLGLAGALFHLLNHALAKALLFLAAGAIERATGTRDLDKLGGLGKRMPLTAAAFLIGALALAGLPP 385
PRK02546 PRK02546
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 48-358 8.38e-27

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 235050 [Multi-domain]  Cd Length: 525  Bit Score: 112.49  E-value: 8.38e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702  48 ISWFFGVDYFSFGLILLSFWICSLMITASSSVylsSYHSSIFVFMVLFLMIMLYCSFSSLSLLSFYIFFEASLIPTLLLI 127
Cdd:PRK02546  79 LTWSVGADGLSMPLILLTGFITTLAVLAAWPV---TFKPKLFYFLMLAMYGGQIAVFAVQDMLLFFLAWELELIPVYLLL 155

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702 128 LGWGYQpERLQAGIYLIFYTLVASLPLLLVLFKVYDCSYTLYFPL----LSDFG-SFYFLFYLFIILAFLIKMPMFLVHL 202
Cdd:PRK02546 156 AIWGGK-KRQYAATKFILYTAGSSLFILLAALAMAFYGDTPTFDMtalaAKDFGlGFQLLCYAGLLIAYGVKLPIVPLHT 234

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702 203 WLPKAHVEAPISGSMILAGVLLKLGGYGIFRV-MKVISFLGLSFNYFWLALGLSGGVVVSFICFRQVDLKSLIAYSSVAH 281
Cdd:PRK02546 235 WLPDAHGEATAPVHMLLAGILLKMGGYALLRMnAGMLPDAHAQFAPLLIVLGVVNIIYAALTSFAQRNLKRKIAYSSISH 314

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 688074702 282 MSMVIGGLMTMNWWGCMGSLCLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMALWWFLLSSSNMAAP 358
Cdd:PRK02546 315 MGFVLIGIGSFTDLGTSGAMLQMISHGLIGASLFFLVGATYDRTHTLMLDEMGGVGQKMRKMFAMWTACSLASLALP 391
ndhD CHL00011
NADH dehydrogenase subunit 4
 50-393 1.68e-25

NADH dehydrogenase subunit 4


Pssm-ID: 176954 [Multi-domain]  Cd Length: 498  Bit Score: 108.49  E-value: 1.68e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702  50 WFFGVDYFSFGLILLSFWICSLMITASSSVYLSSYhssifvfMVLFLMIMLYC----SFSSLSLLSFYIFFEASLIPTLL 125
Cdd:CHL00011  78 WRLGIDGLSIGPILLTGFITTLATLAAWPVTRNSR-------LFYFLMLAMYSgqigLFSSRDLLLFFIMWELELIPVYL 150

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702 126 LILGWGYQpERLQAGIYLIFYTLVASLPLLLVLFKVydCSY-----TLYFPLLSDFG---SFYFLFYLFIILAFLIKMPM 197
Cdd:CHL00011 151 LLSMWGGK-KRLYSATKFILYTAGGSIFLLIGVLGM--GLYgsnepTLNFETLANQSypvALEILFYIGFLIAYAVKLPI 227

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702 198 FLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRV-MKVISFLGLSFNYFWLALGLSGGVVVSFICFRQVDLKSLIAY 276
Cdd:CHL00011 228 IPLHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRInMELLPHAHSIFSPWLVIVGAIQIIYAASTSLGQRNLKKRIAY 307

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702 277 SSVAHMSMVIGGLMTMNWWGCMGSLCLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMALWWFLLSSSNMA 356
Cdd:CHL00011 308 SSVSHMGFIIIGIGSITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYLDEMGGIAIPMPKIFTMFSSFSMASLA 387

                        330       340       350
                 ....*....|....*....|....*....|....*..
gi 688074702 357 APPSLNLLGELGLLNSIISWSSLSFLTLMFLSFFSAV 393
Cdd:CHL00011 388 LPGMSGFVAELIVFFGIITSQKYLLMPKILITFVMAI 424
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
48-338 2.14e-23

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 102.47  E-value: 2.14e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702  48 ISWFFGVDYFSFGLILLSFWICSLMITASSSvylSSYHSSIFVFMVLFLMIMLYCSFSSLSLLSFYIFFEASLIPTLLLI 127
Cdd:PRK06473  71 LSYHLGVDGLSLPLLVLNSLLTLIAIYSSDE---SIQRPRFYYSLLLLLNAGVSGAFLAQDLLLFFLFYELELIPLYLLI 147

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702 128 LGWGYQpERLQAGIYLIFYTLVASLPLL---LVLFKVYDCSYTLYFPLLSDF--GSFYFLFYLFIILAFLIKMPMFLVHL 202
Cdd:PRK06473 148 AIWGGQ-RRGYAATKFLLYTAISGILILvsfLGLVWLSGASSFDYEPLRSHTlpLSTQLLLLAPILVGFGIKIPLVPFHT 226

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702 203 WLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKVISFLGLSFNYFWLALGLSGGVVVSFIC-FRQVDLKSLIAYSSVAH 281
Cdd:PRK06473 227 WLPDAHVEASTPVSVLLAGVLLKLGTYGLLRFGVGLFPEAWVYLAPWLATWAVVSVLYGASCaIAQKDMKKMVAYSSIGH 306

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 688074702 282 MSMVIGGLMTMNWWGCMGSLCLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMIN 338
Cdd:PRK06473 307 MGYILLAAAAATPLSILAAVFQMISHGLISALLFLLVGVVYKKTGSRDVDVLRGLLN 363
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 113-359 3.72e-18

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 86.47  E-value: 3.72e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702 113 YIFFEASLIPTLLLIlGWGYQPERLQAGIYLIFYTLVASLPLLLVLFKVYDCSYTLYFPLLSD---FGSFYFLFYLFIIL 189
Cdd:PRK08375 132 FVFLEIMSLSSYALV-AMGGDRRALAAARKYLIVGLIGSTFLLIGVGLLYGVTGTLNMADLAGalaENPTVVTAFGFVLL 210

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702 190 AFLIKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKVI----SFLGLSFNYFWLALGLSGGVVVSFICF 265
Cdd:PRK08375 211 ALALKAAVFPLHTWLPRAYPAAPPVVTALLSGLVTKVAVYALIRIYFTVfggdFRFALGLGWLLAVLALLSMLVGSLAAL 290

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702 266 RQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLCLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMAL 345
Cdd:PRK08375 291 GQDDVKRVLAYSTVSQMGYILLGLALLTPLALAAGLLHLLHHALMKGALFLAAGAIEVTYGTRRLSELSGLGRRMPLTAA 370

                        250
                 ....*....|....
gi 688074702 346 WWFLLSSSNMAAPP 359
Cdd:PRK08375 371 AFAVASLSLIGVPP 384
ND4 MTH00062
NADH dehydrogenase subunit 4; Provisional
 16-343 1.05e-17

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214413 [Multi-domain]  Cd Length: 417  Bit Score: 84.59  E-value: 1.05e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702  16 LIGNFWWLVHSLMFVVSFFFMIGV--YSYSDLNMISWFFGVDYFSFGLILLSfwicsLMITASSSVYLSSYHSSIFVFMV 93
Cdd:MTH00062   3 FFSVGFFLGFLLLLLFCLLYSSGVgcCILVVNNVFNGLFIFDSLSFYLILLV-----LFLGLYSQVMFYNLLSGVSRFFL 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702  94 LFLMIMLYCSFSSLSLLSFYIFFEASLIPTLLLILGWGYQPERLQAGIYLIFYTLVASLPLLLVLFKVYDCSYTLYFPLL 173
Cdd:MTH00062  78 FLSLIFSILCFCVNNSLLFWFFYELSIIPLLYLLFSESPYSERYLASWYFLGYLLLTSLPLLLCLLYLSLVNGSFNFSDW 157

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702 174 SDFGSFYFLFYLFIILAFLIKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKVISflgLSFNYFWLALG 253
Cdd:MTH00062 158 GSDDSVSLIVYYVLSFMFITKVPLFPFHTWLPIVHAEASSPVSIFLSGYIMKLGLLGVYRFCGFIF---SGSFLGYLFLC 234

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702 254 LSGGVVVSFICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLCLMIGHGLCSSGLFCLSNIIYERLGSRSLLIN 333
Cdd:MTH00062 235 CLFSVFFLITACSELDGKRWLAFLSLSHILVPVLGLFVGDWSSINLSFFYCLGHGLSAGLVFLLLWCFYEVSGSRNWVLL 314

                        330
                 ....*....|
gi 688074702 334 KGMINLMPSM 343
Cdd:MTH00062 315 KSGINGSLVL 324
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
48-357 1.11e-17

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 85.15  E-value: 1.11e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702  48 ISWFFGVDYFSFGLILLSfwiCSLMITASSSVYLSSYHSSIFVFMVLFLMIMLYCSFSSLSLLSFYIFFEASLIPTLLLI 127
Cdd:PRK07363  71 LSYSLGVDGLSLPLLVLN---SLLTWIAIYSIGENTERPRLYYSLILLINGGIAGALLAQNLLLFFLFYELELIPFYLLI 147

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702 128 LGWGYQpERLQAGIYLIFYTLVASLPLLLVLFKV----------YDCSYTLYFPLlsdfgSFYFLFYLFIILAFLIKMPM 197
Cdd:PRK07363 148 AIWGGE-KRGYASIKFLIYTAVSGLLVLAAFLGIvwlsgstsfdYDAISTQNLSL-----NTQLILLTGLLLGFGIKIPL 221

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702 198 FLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMkvisfLGL---SFNYFWLALGLSGGVVV---SFICFRQVDLK 271
Cdd:PRK07363 222 VPLHTWLPDAYTEASPAVAILLGGVLAKLGTYGLLRFG-----LQLfpqTWSLVAPGLAIIGTISViygALSAIAQKDIK 296

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702 272 SLIAYSSVAHMSMVIGGLMTMNWWGCMGSLCLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMALWWFLLS 351
Cdd:PRK07363 297 RMVAYSSIGHMGYILVAAAAGTQLSLLGAVAQMISHGLILALLFHLVGIVERKVGTRDLDVLNGLMNPIRGLPLTSALLV 376


                 ....*.
gi 688074702 352 SSNMAA 357
Cdd:PRK07363 377 LAGMAS 382
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 144-359 4.36e-16

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 80.40  E-value: 4.36e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702 144 IFYTLVASLPLLLVLFKVYDCSYTLYFPLLSDFGSFYFLFYLFIILAFLIKMPMFLVHLWLPKAHVEAPISGSMILAGVL 223
Cdd:PRK12667 186 FLYATFGTLNMADLSAKIRGLSFPLTGGLAGNPPLALGVALALALWAFTIKAAIFPNHFWLPDAHPAAPSPVSAMLSGLV 265

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702 224 LKLGGYGIFRVMKVISFLGLSFNYFWLA-------LGLSGGVVVSFICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWG 296
Cdd:PRK12667 266 VNVGAYAIIRFLYTIFGISPSLIDFRAAlspiliiLGAVSAIIGALMMVVQKDVKRLLAYSTISHMGYIFMGIGIGTQLG 345

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 688074702 297 CMGSLCLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMALWWFLLSSSNMAAPP 359
Cdd:PRK12667 346 LAAALFHIINHAIAKSLLFLASGVFIHAAGTRDIDELAGLGRKMPIASFAFLIGALSLVGIPP 408
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 186-352 6.68e-15

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 76.51  E-value: 6.68e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702 186 FIILAFLIKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKVIS-FLGLSF-NYFWLALGLSGGVVVSFI 263
Cdd:PRK06458 219 FLLIGFGTKVGLFPMHAWLPDAHSEAPSPVSALLSGVLLNVALYAVLRYYILIDaAIGSDFpGRLLLIFGLLSVLVAAFF 298

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702 264 CFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLCLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSM 343
Cdd:PRK06458 299 LLRQRDIKRLFAYSSIEHMGLIAFALGIGGPLGIFAALLHMLNHSLTKSAIFFASGNVLQKYGTRDINVIRGLLKVSPLT 378


                 ....*....
gi 688074702 344 AlWWFLLSS 352
Cdd:PRK06458 379 G-WGLMLGA 386
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 28-341 2.39e-13

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 71.95  E-value: 2.39e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702  28 MFVVSFFFMIGVYSYSDLNMISWFFGVDYFSFGLILLS----FWICSLMITASSSVYLSSYH---SSIFVFMVLFLMIML 100
Cdd:PRK08668  32 NALPLLFLIKLYFTLKVGTGEKLTLFFGGFKLTFTLTHlswfFAMISLLVIFSVAFFMVSEKtknDAYFNMFALMSLAGV 111

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702 101 YCSFSSLSLLSFYIFFEASLIPTLLLILgWGYQPERLQAGIYLIFyTLVASLPLLLVLFKVYDCSYTLYFPLLSDF---- 176
Cdd:PRK08668 112 LGVFLANDLLTLYIFWEIMTFSSFMMVP-MGKKESRKASLKYFVL-SAIGAYAMLYAIFLIYAKTGTFDFADISQGlind 189

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702 177 --GSFYFLFYLFIILAFLIKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKVISFLGL----------- 243
Cdd:PRK08668 190 tsTGFALIVFLFLLAFGVAKAGIFPLHVWAPDAYSEAPQSFSAVLSGQLSKLGAYGFLLVLYVLPGTKLfsefgtyrgvp 269

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702 244 SFNYFWLALGLSGGVVVSFICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLCLMIGHGLCSSGLFCLSNIIYE 323
Cdd:PRK08668 270 LFNYILAWLGNISIIVGTLMAILQEDIKKLIAYSSVANGGYILVGLGLGTSLGFAGGLFHVFNHALFKGLFFLIFAAVIY 349

                        330
                 ....*....|....*...
gi 688074702 324 RLGSRSLLINKGMINLMP 341
Cdd:PRK08668 350 RTGTTKISEMGGLIEKMP 367
Oxidored_q5_N pfam01059
NADH-ubiquinone oxidoreductase chain 4, amino terminus;
1-102 1.44e-12

NADH-ubiquinone oxidoreductase chain 4, amino terminus;


Pssm-ID: 366442 [Multi-domain]  Cd Length: 110  Bit Score: 63.70  E-value: 1.44e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702    1 MLKYLFMLIFMTPLCLIGNFWWL-----VHSLMFVVSFFFMIGVYSYSDLNMISWFFGVDYFSFGLILLSFWICSLMITA 75
Cdd:pfam01059   1 MLKILLPTLMLIPLTFLSKPKWLwttstLYSLLLALLSLLLLNNPSNFSWSNLSYFLGIDSLSYPLIILSCWLLPLMILA 80

                          90       100
                  ....*....|....*....|....*....
gi 688074702   76 SSSVYLSS--YHSSIFVFMVLFLMIMLYC 102
Cdd:pfam01059  81 SQKHLKSEpnNRQRTFIFLLILLQLFLIL 109
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 113-324 3.52e-12

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 68.05  E-value: 3.52e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702 113 YIFFEASLIPTLLLIlGWGYQPERLQAGIYLIFYTLVASLPLLLVLFKVYDCSYTLYFPLLSDFGSFYFLFylfIILAFL 192
Cdd:PRK07234 120 YVALEVLSIATFLLV-AYPRTDRAIWVGLRYLFYSNVAMLFYLIGAVLVYQANGTFAFSGLATADPEAFAL---IALGLL 195

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702 193 IKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKVISFLGLSFNYFWLALGLSGgvvvSFICFRQVDLKS 272
Cdd:PRK07234 196 VKGGIFVSGLWLPLTHSEAEPPVSALLSGVVVKAGVFPLVRCALDVPGLDLIVRIFGVGTALLG----VLFALLEKDLKR 271

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|..
gi 688074702 273 LIAYSSVAHMSMVIGGlmtmnwwGCMGSLcLMIGHGLCSSGLFCLSNIIYER 324
Cdd:PRK07234 272 MLAFSTISQLGFILAA-------PLVGGL-YALAHGLVKSTLFLCAGALPSR 315
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 91-359 5.90e-12

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 67.83  E-value: 5.90e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702  91 FMVLFLMIMLYCSFSSLSLLSFyIFFEASLIPTLLLILGWGYQPERLQAGIYLIFYTLVASLPLLLVLFKVYDCSYTLYF 170
Cdd:PRK08667 116 LTALFILSMLGVVASANTFSFL-FFWEIMALSSFFLVMNDYQEEETQRAGIFYFVMTQLSTVFLMLGIIVLFIQTGSFEL 194

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702 171 PLLSDFGSFYFLFYLFIILAFLIKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKVISFLGLSFNYFWL 250
Cdd:PRK08667 195 SPLGASAGILSLVFLLLFLGFGIKAGIIPFHKWLPYAHPASPSNVSALMSGVMLKVAVYGLVRFLMDVLSPELWWGVLIL 274

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702 251 ALGLSGGVVVSFICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMG--SLCLM---------IGHGLCSSGLFCLSN 319
Cdd:PRK08667 275 LAGSISALLGVIYALKEHDLKGLLAYSSIENIGIILMGIGLYVIFGVYGldTLALLalggalfhsLNHALFKSLLFLTAG 354

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|
gi 688074702 320 IIYERLGSRSLLINKGMINLMPSMALWWFLLSSSNMAAPP 359
Cdd:PRK08667 355 SVVHATGTRNIEKMGGLVKLMPYTSALFLVGAVSIAALPP 394
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 178-327 3.02e-11

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 65.16  E-value: 3.02e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702 178 SFYFLFYLFIILAFLIKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKVI--SFLGLSFNYFWLALGLS 255
Cdd:PRK08676 203 SVLGASFLFIFIGFLAKSGLVPFHTWLPAAYAKAPSVVSALLSGTVLNIGIYGILRLSALLrqSGAAEQFSNVLIGLGIF 282

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 688074702 256 GGVVVSFICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLCLMIGHGLCSSGLFCLSNIIYERLGS 327
Cdd:PRK08676 283 SIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPLALFWMLFHMLAHSLVKSGLFFSAGILHRQYRS 354
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 185-395 2.75e-10

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 62.06  E-value: 2.75e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702 185 LFIILAFLIKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKVI-----SFLGLSFNYFWLALGLSGGVV 259
Cdd:PRK12662 213 LFIMVGLFIKAALFPFHKWLIQAYSEAPSFISVFFSGTSTKVMIYLIIRIVYDVfkanfVFTTLPFNNVFMILAALAIVF 292

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702 260 VSFICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLCLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINL 339
Cdd:PRK12662 293 GSVLAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYIVNHSIVKSALFMVSGSISYHFGTTKLEDCLNLWKS 372

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 688074702 340 MPSMALWWFLLSSSNMAAPPSLNLLGELGLLNSII-SWSSLSFLTLMFLSFFSAVYT 395
Cdd:PRK12662 373 MPKITLAFVLLSLSLIGMPPTSGFVAKWYILDAFIkSNAWIGLVVLLVGSGLSVIYV 429
PRK12646 PRK12646
DUF4040 family protein;
80-359 6.24e-10

DUF4040 family protein;


Pssm-ID: 183646 [Multi-domain]  Cd Length: 800  Bit Score: 61.31  E-value: 6.24e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702  80 YLSSYHSSI---FVFMVLFLMIMLyCSFSSLSLLSFYIFFEASLIPTLLLILGWGYQPERLQAGIYLIFYTLVASLPLLL 156
Cdd:PRK12646 101 YLSSRKDNLprfYFYLTLFMFSMI-GIVLSDNTILMYVFWELTSVSSFLLISYWYNNGDSQFGAIQSFMITVFGGLALLV 179

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702 157 VLFKVYDCSYTLYFPLL-------SDFGSFYFLFYLFIILAFlIKMPMFLVHLWLPKAhVEAPISGSMIL-AGVLLKLGg 228
Cdd:PRK12646 180 GFIMLYIMTGTNNITEIlgqadhiKNHGLFIPMIFMFLLGAF-TKSAQFPFHIWLPRA-MAAPTPVSAYLhSATMVKAG- 256

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702 229 ygIFRVMKVISFLGLSFNYFWLA--LGLSGGVVVSFICFRQVDLKSLIAYSSVAH----MSMV-IGGLMTMNWWGCMGSL 301
Cdd:PRK12646 257 --IFLLFRFTPLLGLSNMYIYIVtfVGLITMLFGSITALKQWDLKGILAYSTISQlgmiMAMVgIGGGYAQHQQDAIASI 334

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 688074702 302 CLMI---------GHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMALwWFLLSSSNMAAPP 359
Cdd:PRK12646 335 YVFVlfaalfhlmNHAIFKCALFMGVGIIDHEAGTRDIRILSGMRQLFPKMNL-VMTIAALSMAGVP 400
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
 113-349 4.65e-09

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 58.44  E-value: 4.65e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702 113 YIFFEASLIPTLLLiLGWGYQPERLQAGIYLIFYTLVASLPLLLVLFKVYDCSYTLYFPLLS------DFGSFYFLFYLF 186
Cdd:PRK12665 137 YVGFEILLVASYVL-LTLGATAARVRAGVTYVMVSMVSSLLFLIGIALVYAATGTLNMADLAvrldelPSGTRTALFAVL 215

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702 187 IIlAFLIKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKVIsFLGLSFNYFWLALGLSGGVVVSFICFR 266
Cdd:PRK12665 216 LV-AFGIKAAVFPLSFWLPDSYPTAPAPVTAVFAGLLTKVGVYAIIRTHTLL-FPGGGLDTLLMVVALLTMVVGILGAIA 293

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702 267 QVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLCLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMALW 346
Cdd:PRK12665 294 QSDIKRLLSFTLVSHIGYMVFGIALSTVAGLSGAIYYVAHHITVQTTLFLVVGLIERQAGSSSLRRLGGLAKASPLLAVL 373


                 ...
gi 688074702 347 WFL 349
Cdd:PRK12665 374 FFV 376
PRK06521 PRK06521
hydrogenase 4 subunit B; Validated
 188-359 7.14e-08

hydrogenase 4 subunit B; Validated


Pssm-ID: 235820 [Multi-domain]  Cd Length: 667  Bit Score: 54.89  E-value: 7.14e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702 188 ILAFL---IKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVmkVISFLG---LSFNYFWLALGLSG---GV 258
Cdd:PRK06521 214 LLALFgfgAKAGLVPLHVWLPRAHPAAPSHVSALMSGVMLKVAIYGILRV--VFDLLGapgWWWGVLVLALGAISavlGV 291

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702 259 VVSFIcfrQVDLKSLIAYSSVAHM---SMVIG--------GLMTMNWWGCMGSLCLMIGHGLCSSGLFCLSNIIYERLGS 327
Cdd:PRK06521 292 LYALA---EHDLKRLLAYSTIENIgiiFVGLGlamvfiayGMPLLAALALTAALYHLLNHALFKSLLFLGAGAVLHATGT 368

                        170       180       190
                 ....*....|....*....|....*....|..
gi 688074702 328 RSLLINKGMINLMPSMAlWWFLLSSSNMAAPP 359
Cdd:PRK06521 369 RDMEKLGGLIRRMPWTA-WAFLIGCLAISALP 399
PRK08377 PRK08377
NADH dehydrogenase subunit N; Validated
 187-359 1.34e-07

NADH dehydrogenase subunit N; Validated


Pssm-ID: 181406 [Multi-domain]  Cd Length: 494  Bit Score: 53.62  E-value: 1.34e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702 187 IILAFLIKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKVISFLGLSFNYFWL--ALGLSGGVVVSFIC 264
Cdd:PRK08377 212 LIFGLAVEAELFPLNAWAPDAYQAAPHPITVMFSAFVVKAGLYAMARILYLMQNANGWSSVLKLviIMATLTVFFAELSA 291

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702 265 FRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLCLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMA 344
Cdd:PRK08377 292 LRQKNVKRMIAYSSIGQVGMIALALALGTQAGVDAGVFHMINHAIVKALLFLAVGYVGITLGGTEIEKFEGLGKRMPLTA 371

                        170
                 ....*....|....*
gi 688074702 345 LWWFLLSSSNMAAPP 359
Cdd:PRK08377 372 LALTIGALSTVGIPL 386
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
 61-359 1.16e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 50.59  E-value: 1.16e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702  61 LILLSF-WICSLMITASSSVYLSSYHSSIFVFMVLFLMIMLYCSFSSLSLLSFYIFFEASLIPTLLLIlGWGYQPERLQA 139
Cdd:PRK06589  89 LLLIGFlWICALLYTPKYLAINNIDSSSRFLFFFNLTILIGVLIALSSDLFTMFVCYELLTISTAFLI-GHTRNNISLSG 167

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702 140 GI-YLIFYTLVASLPLLLVLFKVYDCSYTLYFPLLSDFGSFYFLFYLFIILAFLIKMPMFLVHLWLPKAHVEAPISGSMI 218
Cdd:PRK06589 168 GYkYLKILMISALLLFLPAVILIYTKTGNLDFVSGGLFSKNQSIILLLMFIYGIAKTAIFPVHSWLPAAMVAHYPVSALL 247

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702 219 LAGVLLKLGGYGIFRVMKVISFLGL------SFNYFWLALGLSgGVVVSFICFRQVDLKSLIAYSSVAHMSMVIGGLMTM 292
Cdd:PRK06589 248 HAVIVVKTGLFCIYKILLYIFGLSYlqrifaEFNWLIFIPIVS-IFYSSLKALKTDNIKKILAYSTISQLSLALLSAFIL 326

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 688074702 293 NWWGCMGSLCLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMALWWFLLSSSNMAAPP 359
Cdd:PRK06589 327 TPKALGAAILHLVSHSFAKICLFYSMGSIYSLKKEDQVDKLHGTSKSFPLISFIISISSLSLIGIPI 393
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 113-341 3.14e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 49.33  E-value: 3.14e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702 113 YIFFEASLIPTLLLILGWGYQPERLQAGIYLIFYTLVASLPLLLVLFKVYDCSYTLYFPLLSDFGSFYFLFYLFIILAFL 192
Cdd:PRK08376 147 FVFLEIMSIASYALVAFRNDTWEAIEAGIKYMFVGSLASSMVLLGIALLYGQYGTLNMAYLAVKMSENPTVVAKIALALF 226

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702 193 I-----KMPMFLVHLWLPKAHVEAPISGSMILagVLLKLGG-YGIFRVmkvisflglSFNYFWLALGLS--GGVVVSFIC 264
Cdd:PRK08376 227 IaglamKSGAVPVHMWLPDAYPAAPSSISAML--LVIKQAGlYALARV---------LFSIYGPAINLAtvGWVIIILGC 295

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702 265 FR----------QVDLKSLIAYSSVAH---------MSMVIGGLMTMNWWGCM---GSLCLMIGHGLCSSGLFCLSNIIY 322
Cdd:PRK08376 296 LTmfvgvamavvQKDVKRLLAYHSVSQigymllglgVGLAALGDPAMASYGEIalaGGIYHIVNHALYKALLFLTAGAVI 375

                        250
                 ....*....|....*....
gi 688074702 323 ERLGSRSLLINKGMINLMP 341
Cdd:PRK08376 376 YETGTRNLNELGGLARTMP 394
PRK07691 PRK07691
putative monovalent cation/H+ antiporter subunit D; Reviewed
 52-359 5.68e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 181085 [Multi-domain]  Cd Length: 496  Bit Score: 45.32  E-value: 5.68e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702  52 FGVDYFSFGLILLSFWICSLMITASSSVYLSSYHSSIFVFMVLFLMIMLYCSFSSLSLLSFYIFFEASLIPTLLLILGWG 131
Cdd:PRK07691  73 FVADMFAALLVLTSSIITFLVILYSFQTIGIERERYYYYPSVLFMLAGVNGAFLTGDIFNLFVFFEVMLMASYVLIVIGG 152

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702 132 YQPErLQAGIYLIFYTLVASLPLLLVLFKVYDCSYTLYFPLLS---------DFGSFYFLFYLFIILaFLIKMPMFLVHL 202
Cdd:PRK07691 153 TKIQ-LRESIKYVLINVVSSAFFVVAVAILYSVVGTLNMADISvkiaelsagQTGLITVVAILFLFV-FATKAGLFPLYF 230

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702 203 WLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKVISFLGLSFNYfwLALGLSGGVVVSFICF---RQVDLKSLIAYSSV 279
Cdd:PRK07691 231 WLPGSYYAPPIAIAALFGALLTKVGVYAIARTFTLFFSHDTSFTH--YLILILALLTIIFGVIgavAYFDIKKIIIYNIM 308

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702 280 AHMSMVIGGLMTMNWWGCMGSLCLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMAlWWFLLSSSNMAAPP 359
Cdd:PRK07691 309 IAVGVILVGVAMMTESGMIGAIYYLIHDMIVKAALFLLIGIMIKITGTTDLKKMGGLIKRYPVLG-WMFFIAALSLAGIP 387
PRK08042 PRK08042
formate hydrogenlyase subunit 3; Reviewed
 200-359 8.96e-04

formate hydrogenlyase subunit 3; Reviewed


Pssm-ID: 181206 [Multi-domain]  Cd Length: 593  Bit Score: 41.74  E-value: 8.96e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702 200 VHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFrvmkVISFLGLSFNYFWLALGLSGGVVVSFI----CFRQVDLKSLIA 275
Cdd:PRK08042 199 LHGWVPQAHANASAPAAALFSTVVMKIGLLGIL----TLSLLGGNAPLWWGVALLVLGMITAFVgglyALMEHNIQRLLA 274

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702 276 YSSVAHMSMVIGGL-----------MTMNWWGCMGSLCLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMA 344
Cdd:PRK08042 275 YHTLENIGIILLGLgagvtgialeqPALIALGLVGGLYHLLNHSLFKSVLFLGAGSVWFRTGHRDIEKLGGIGKKMPVIS 354

                        170
                 ....*....|....*
gi 688074702 345 LwWFLLSSSNMAAPP 359
Cdd:PRK08042 355 I-AMLVGLMAMAALP 368
PRK12650 PRK12650
DUF4040 family protein;
188-359 9.72e-04

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 41.57  E-value: 9.72e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702 188 ILAFLI------KMPMFLVHLWLPKAHVEA-PIS-----GSMILAGVLLKLGGYGIFRVMKVisflglsFNYFWLALGLS 255
Cdd:PRK12650 209 VVAVLIavaaftKSAQFPFHFWLPEAMAAItPVSaflhaAAVVKAGIYLLLRFSPVFHDVAV-------WNWLLIIVGMI 281

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702 256 GGVVVSFICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLCLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKG 335
Cdd:PRK12650 282 TALMGAVFAVQKTDLKKLTAYSTVSQLGWIVATIGVGTPFALTAAVVHTLAHALFKSSLFMLIGVVDHQAGTRDIRRLGS 361

                        170       180
                 ....*....|....*....|....
gi 688074702 336 MINLMPsMALWWFLLSSSNMAAPP 359
Cdd:PRK12650 362 LWRRMP-FTFVSVTIAALSMAAVP 384
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
113-359 1.36e-03

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 41.09  E-value: 1.36e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702 113 YIFFEASLIPTLLLILgWGYQPERLQAGIYLIFYTLVASLPLLLVLFKVYDCSYTLYFPLLS-------DFGSFYFLFYL 185
Cdd:PRK12663 134 YVWFEVMLIASFVLIT-LGQEREQLRGAIKYVVLNLIGSWLFLLGIGLLYGTFGTLNMAHIAmrlndmgDTATLTTIALL 212

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702 186 FIiLAFLIKMPMFLVHlWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKVI----SFLGLSFNYFWLALGLSGGVVVS 261
Cdd:PRK12663 213 FL-LAFGMKAALFPFM-WLPAAYHTPNTEVAALFAALLTKVGIYALIRVFTLLfpqeRELLHPLLATMAAITMVIGALGA 290

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702 262 FIcfrQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLCLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMP 341
Cdd:PRK12663 291 LA---YKDIRRIAGYQVISSIGFILLGLALGTPAGINGAIFYLVHDMVVKTALFLIAGSLVRLTGYRSLQYLGGLYRKEP 367

                        250
                 ....*....|....*...
gi 688074702 342 SMALWWFLLSSSNMAAPP 359
Cdd:PRK12663 368 LFGALFLILIFAIGGLPP 385
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 52-359 1.77e-03

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 40.67  E-value: 1.77e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702  52 FGVDyFSFGLILLSFWICsLMIT-------ASSSVYLSSYH------SSIFVFMVLFL-------MIMLYcsfsslslls 111
Cdd:PRK12647  54 LGVN-LSFLLDGLSLTFA-LLITgigtlivLYAGGYLKGHPdlgrfySYILLFMASMLglvlsdnLITLF---------- 121

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702 112 fyIFFEASLIPTLLLIlgwGYQPER-------LQAgiylIFYTLVASLPLLLVLFKVYDCSYTLYFPLLSDFG------S 178
Cdd:PRK12647 122 --VFWELTSITSFLLI---GFNHEReaarraaLQA----LLVTGGGGLALLAGLILLGNVTGTYSLSELLASGdvirehP 192

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702 179 FYFLFYLFIILAFLIKMPMFLVHLWLPKAhVEAPI-------SGSMILAGVLLklggygifrVMKVISFLGLSFNYFWLa 251
Cdd:PRK12647 193 LYLAILLLVLGGAFTKSAQFPFHFWLPNA-MEAPTpvsaylhSATMVKAGIYL---------LARLNPVLGGTPLWQTI- 261

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702 252 LGLSGG---VVVSFICFRQVDLKSLIAYSSVahmsMVIGGLMTMNWWGC----MGSLCLMIGHGLCSSGLFCLSNIIYER 324
Cdd:PRK12647 262 LPLFGGltmLTGALLAVRQTDLKLILAYSTV----SALGTLVMLLGLGSelaiKAAVLFLVAHSLYKGALFMVAGIIDHE 337

                        330       340       350
                 ....*....|....*....|....*....|....*
gi 688074702 325 LGSRSLLINKGMINLMPSMALWWFLLSSSNMAAPP 359
Cdd:PRK12647 338 TGTRDITKLGGLRRAMPITAAAALLAALSMAGLPP 372
PRK06525 PRK06525
hydrogenase 4 subunit D; Validated
 134-359 2.43e-03

hydrogenase 4 subunit D; Validated


Pssm-ID: 180606 [Multi-domain]  Cd Length: 479  Bit Score: 39.96  E-value: 2.43e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702 134 PERLQAGIYLIFYTLVASLPLLLVLFKVYDCSYTLYFPLLSDF-GSFYFLFYLFIILAFLIKMPMFLVHLWLPKAhVEAP 212
Cdd:PRK06525 159 PKALRSALKALLITHIGSLGLYLAAATLFLQTGTFALSALSGLhGSLKYLVFLGILFAAWGKSAQLPFYSWLPDA-MEAP 237

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702 213 ISGSMIL-AGVLLKLGGYGIFRVMKVISFLGLSFNYFWLALGLSGGVVVSFICFRQVDLKSLIAYSSVAHMSMVIGGLMT 291
Cdd:PRK06525 238 TPASAYLhAASMVKVGVYIFARAIQSMGPIPHVIGYVGAVMAIVTLLYGFLMYLPQQDMKRLLAYSTITQLGYMFFGLSL 317

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 688074702 292 M---NWWGCMGSLCLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMALWWFLLSSSNMAAPP 359
Cdd:PRK06525 318 AilgSRLALEGSIAYIFNHAFAKSLFFLVAGALSYSCGTRLLPRLRGVLKKLPLVGVGFCVAALAITGVPP 388
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 113-292 9.13e-03

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 38.66  E-value: 9.13e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702 113 YIFFEASLIPTLLLILGWGYQPERLQAGIYLIFYT------LVASLPLLLVLFKVYDCSYTLYFPLLSDFGSFYFLFYLF 186
Cdd:PRK12649 137 FIFWELTSITSFMLIGYWRHRPESVYGATKSLLITaggglfMFAGFLLLHVITGTYDIATILQDSELIENIKGHPLFLIT 216

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688074702 187 IILAFL---IKMPMFLVHLWLPKAhVEAPISGSMIL-AGVLLKLGGYGIFRVMKVisflgLSFNYFWLAL----GLSGGV 258
Cdd:PRK12649 217 LILIFIgaaAKSAQGPFYIWLPNA-MEAPTPVSAFLhSATMVKAGVYLVARIHPI-----FSGTEAWFILvsgtGMITMV 290

                        170       180       190
                 ....*....|....*....|....*....|....
gi 688074702 259 VVSFICFRQVDLKSLIAYSSVAHMSMviggLMTM 292
Cdd:PRK12649 291 LAGFLAFRQTDIKAILAYSTISQLAY----LMTM 320
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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