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Conserved domains on  [gi|685339663|ref|XP_009106722|]
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uncharacterized protein At2g39795, mitochondrial [Brassica rapa]

Protein Classification

MAM33 family protein( domain architecture ID 10492045)

MAM33 family protein similar to Homo sapiens mitochondrial complement component 1 Q subcomponent-binding protein and Saccharomyces cerevisiae mitochondrial acidic protein MAM33

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
MAM33 pfam02330
Mitochondrial glycoprotein; This mitochondrial matrix protein family contains members of the ...
69-239 1.37e-32

Mitochondrial glycoprotein; This mitochondrial matrix protein family contains members of the MAM33 family which bind to the globular 'heads' of C1Q. It is thought to be involved in mitochondrial oxidative phosphorylation and in nucleus-mitochondrion interactions.


:

Pssm-ID: 460534  Cd Length: 209  Bit Score: 117.76  E-value: 1.37e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 685339663   69 EIDYELNHSPPLQSPSSY------GPFTVEERHGEQWISLKRKYGEkEDIKV----------------------EATMFD 120
Cdd:pfam02330   4 EIKYEKENKEDEEEPASVkeflenGGFEIEDKPGSDEVTLTRKFGD-EKIRVtfsvadlvnlpedeeedeeeeeDEAEAD 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 685339663  121 RSVPTSKSTRTEPEFIlhITFVVNISKGiSGESLEIVCSAWPDNIEISKLCIRK----GTNSSP-------SSYGGPEFE 189
Cdd:pfam02330  83 EEDEEDEEESEEPSFP--VRFSVTIEKP-GGGALEFDCTAQDGEFVIDNVSYYKdaelALEETAeadwkrrLLYQGPPFD 159
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 685339663  190 ELDDELQDALYQFLEERGISDELAVFLHRYMKNKSKFEYVRWMESVKSYV 239
Cdd:pfam02330 160 NLDEDLQDLFERYLEERGINEELANFIPDYSEYKEQKEYVRWLENVKKFV 209
 
Name Accession Description Interval E-value
MAM33 pfam02330
Mitochondrial glycoprotein; This mitochondrial matrix protein family contains members of the ...
69-239 1.37e-32

Mitochondrial glycoprotein; This mitochondrial matrix protein family contains members of the MAM33 family which bind to the globular 'heads' of C1Q. It is thought to be involved in mitochondrial oxidative phosphorylation and in nucleus-mitochondrion interactions.


Pssm-ID: 460534  Cd Length: 209  Bit Score: 117.76  E-value: 1.37e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 685339663   69 EIDYELNHSPPLQSPSSY------GPFTVEERHGEQWISLKRKYGEkEDIKV----------------------EATMFD 120
Cdd:pfam02330   4 EIKYEKENKEDEEEPASVkeflenGGFEIEDKPGSDEVTLTRKFGD-EKIRVtfsvadlvnlpedeeedeeeeeDEAEAD 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 685339663  121 RSVPTSKSTRTEPEFIlhITFVVNISKGiSGESLEIVCSAWPDNIEISKLCIRK----GTNSSP-------SSYGGPEFE 189
Cdd:pfam02330  83 EEDEEDEEESEEPSFP--VRFSVTIEKP-GGGALEFDCTAQDGEFVIDNVSYYKdaelALEETAeadwkrrLLYQGPPFD 159
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 685339663  190 ELDDELQDALYQFLEERGISDELAVFLHRYMKNKSKFEYVRWMESVKSYV 239
Cdd:pfam02330 160 NLDEDLQDLFERYLEERGINEELANFIPDYSEYKEQKEYVRWLENVKKFV 209
 
Name Accession Description Interval E-value
MAM33 pfam02330
Mitochondrial glycoprotein; This mitochondrial matrix protein family contains members of the ...
69-239 1.37e-32

Mitochondrial glycoprotein; This mitochondrial matrix protein family contains members of the MAM33 family which bind to the globular 'heads' of C1Q. It is thought to be involved in mitochondrial oxidative phosphorylation and in nucleus-mitochondrion interactions.


Pssm-ID: 460534  Cd Length: 209  Bit Score: 117.76  E-value: 1.37e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 685339663   69 EIDYELNHSPPLQSPSSY------GPFTVEERHGEQWISLKRKYGEkEDIKV----------------------EATMFD 120
Cdd:pfam02330   4 EIKYEKENKEDEEEPASVkeflenGGFEIEDKPGSDEVTLTRKFGD-EKIRVtfsvadlvnlpedeeedeeeeeDEAEAD 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 685339663  121 RSVPTSKSTRTEPEFIlhITFVVNISKGiSGESLEIVCSAWPDNIEISKLCIRK----GTNSSP-------SSYGGPEFE 189
Cdd:pfam02330  83 EEDEEDEEESEEPSFP--VRFSVTIEKP-GGGALEFDCTAQDGEFVIDNVSYYKdaelALEETAeadwkrrLLYQGPPFD 159
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 685339663  190 ELDDELQDALYQFLEERGISDELAVFLHRYMKNKSKFEYVRWMESVKSYV 239
Cdd:pfam02330 160 NLDEDLQDLFERYLEERGINEELANFIPDYSEYKEQKEYVRWLENVKKFV 209
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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