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Conserved domains on  [gi|685331638|ref|XP_009103633|]
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uncharacterized protein LOC103829694 [Brassica rapa]

Protein Classification

DUF4283 domain-containing protein( domain architecture ID 82306)

DUF4283 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF4283 super family cl16623
Domain of unknown function (DUF4283); This domain family is found in plants, and is ...
 4-119 3.88e-21

Domain of unknown function (DUF4283); This domain family is found in plants, and is approximately 100 amino acids in length. Considering the very diverse range of other domains it is associated with it is possible that this domain is a binding/guiding region. There are two highly conserved tryptophan residues.


The actual alignment was detected with superfamily member pfam14111:

Pssm-ID: 464086  Cd Length: 145  Bit Score: 89.63  E-value: 3.88e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 685331638    4 AEQNVKFLVG--------------TLPKIWGLEEKVVGTDLGLGRFQFDFDAEEDIETVLKMQPFHFDYWMISLVRWQPR 69
Cdd:pfam14111   6 KEELKLCLVGrftgkvpslgairrVLARQWGLGGGVKIKELGDGYFLFRFPSEEDLERVLSKGPWLIGNVPMLLQRWSPD 85

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 685331638   70 KSKNYPSE--ITFWIKVLGVPLEFWEAPTFRSIGDAIGVTKEVD--------LDYGRIQV 119
Cdd:pfam14111  86 FKPTPEELttIPIWVQLPGLPLHLWSREVLSKIASAVGKPLETDentenktrLSFARVKV 145
 
Name Accession Description Interval E-value
DUF4283 pfam14111
Domain of unknown function (DUF4283); This domain family is found in plants, and is ...
 4-119 3.88e-21

Domain of unknown function (DUF4283); This domain family is found in plants, and is approximately 100 amino acids in length. Considering the very diverse range of other domains it is associated with it is possible that this domain is a binding/guiding region. There are two highly conserved tryptophan residues.


Pssm-ID: 464086  Cd Length: 145  Bit Score: 89.63  E-value: 3.88e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 685331638    4 AEQNVKFLVG--------------TLPKIWGLEEKVVGTDLGLGRFQFDFDAEEDIETVLKMQPFHFDYWMISLVRWQPR 69
Cdd:pfam14111   6 KEELKLCLVGrftgkvpslgairrVLARQWGLGGGVKIKELGDGYFLFRFPSEEDLERVLSKGPWLIGNVPMLLQRWSPD 85

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 685331638   70 KSKNYPSE--ITFWIKVLGVPLEFWEAPTFRSIGDAIGVTKEVD--------LDYGRIQV 119
Cdd:pfam14111  86 FKPTPEELttIPIWVQLPGLPLHLWSREVLSKIASAVGKPLETDentenktrLSFARVKV 145
 
Name Accession Description Interval E-value
DUF4283 pfam14111
Domain of unknown function (DUF4283); This domain family is found in plants, and is ...
 4-119 3.88e-21

Domain of unknown function (DUF4283); This domain family is found in plants, and is approximately 100 amino acids in length. Considering the very diverse range of other domains it is associated with it is possible that this domain is a binding/guiding region. There are two highly conserved tryptophan residues.


Pssm-ID: 464086  Cd Length: 145  Bit Score: 89.63  E-value: 3.88e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 685331638    4 AEQNVKFLVG--------------TLPKIWGLEEKVVGTDLGLGRFQFDFDAEEDIETVLKMQPFHFDYWMISLVRWQPR 69
Cdd:pfam14111   6 KEELKLCLVGrftgkvpslgairrVLARQWGLGGGVKIKELGDGYFLFRFPSEEDLERVLSKGPWLIGNVPMLLQRWSPD 85

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 685331638   70 KSKNYPSE--ITFWIKVLGVPLEFWEAPTFRSIGDAIGVTKEVD--------LDYGRIQV 119
Cdd:pfam14111  86 FKPTPEELttIPIWVQLPGLPLHLWSREVLSKIASAVGKPLETDentenktrLSFARVKV 145
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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