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Conserved domains on  [gi|685307561|ref|XP_009144496|]
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putative lipid-binding protein AIR1 [Brassica rapa]

Protein Classification

HPS-like domain-containing protein( domain architecture ID 10112930)

HPS (Hydrophobic Protein from Soybean) is a small hydrophobic protein with unknown function related to cereal-type alpha-amylase inhibitors and lipid transfer proteins

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
HPS_like cd01958
HPS_like: Hydrophobic Protein from Soybean (HPS)-like subfamily; composed of proteins with ...
 25-110 1.41e-21

HPS_like: Hydrophobic Protein from Soybean (HPS)-like subfamily; composed of proteins with similarity to HPS, a small hydrophobic protein with unknown function related to cereal-type alpha-amylase inhibitors and lipid transfer proteins. In addition to HPS, members of this subfamily include a hybrid proline-rich protein (HyPRP) from maize, a dark-inducible protein (LeDI-2) from Lithospermum erythrorhizon, maize ZRP3 protein, and rice RcC3 protein. HyPRP is an embryo-specific protein that contains an N-terminal proline-rich domain and a C-terminal HPS-like cysteine-rich domain. It has been suggested that HyPRP may be involved in the stability and defense of the developing embryo. LeDI-2 is a root-specific protein that may be involved in regulating the biosynthesis of shikonin derivatives in L. erythrorhizon. Maize ZRP3 and rice RcC3 are root-specific proteins whose functions are yet to be determined. It has been reported that ZRP3 largely accumulates in a distinct subset of cortical cells.


:

Pssm-ID: 238924  Cd Length: 85  Bit Score: 81.22  E-value: 1.41e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 685307561  25 GTCPRNALQIGACTNVLNAIDLTLGNPPPPVppCCSLIAGLADLEAAVCLCTALDVNVLGNNVHLPIDISVLLNACSRFA 104
Cdd:cd01958    2 PTCPRDALKLGVCANVLGLSLLLLGTPAVQP--CCPLIGGLADLDAAVCLCTAIKANILGISINIPVALSLLLNSCGRNV 79


                 ....*.
gi 685307561 105 PPSFQC 110
Cdd:cd01958   80 PPGFTC 85
 
Name Accession Description Interval E-value
HPS_like cd01958
HPS_like: Hydrophobic Protein from Soybean (HPS)-like subfamily; composed of proteins with ...
 25-110 1.41e-21

HPS_like: Hydrophobic Protein from Soybean (HPS)-like subfamily; composed of proteins with similarity to HPS, a small hydrophobic protein with unknown function related to cereal-type alpha-amylase inhibitors and lipid transfer proteins. In addition to HPS, members of this subfamily include a hybrid proline-rich protein (HyPRP) from maize, a dark-inducible protein (LeDI-2) from Lithospermum erythrorhizon, maize ZRP3 protein, and rice RcC3 protein. HyPRP is an embryo-specific protein that contains an N-terminal proline-rich domain and a C-terminal HPS-like cysteine-rich domain. It has been suggested that HyPRP may be involved in the stability and defense of the developing embryo. LeDI-2 is a root-specific protein that may be involved in regulating the biosynthesis of shikonin derivatives in L. erythrorhizon. Maize ZRP3 and rice RcC3 are root-specific proteins whose functions are yet to be determined. It has been reported that ZRP3 largely accumulates in a distinct subset of cortical cells.


Pssm-ID: 238924  Cd Length: 85  Bit Score: 81.22  E-value: 1.41e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 685307561  25 GTCPRNALQIGACTNVLNAIDLTLGNPPPPVppCCSLIAGLADLEAAVCLCTALDVNVLGNNVHLPIDISVLLNACSRFA 104
Cdd:cd01958    2 PTCPRDALKLGVCANVLGLSLLLLGTPAVQP--CCPLIGGLADLDAAVCLCTAIKANILGISINIPVALSLLLNSCGRNV 79


                 ....*.
gi 685307561 105 PPSFQC 110
Cdd:cd01958   80 PPGFTC 85
Hydrophob_seed pfam14547
Hydrophobic seed protein; This domain has a four-helix bundle structure. It contains four ...
 26-111 1.60e-18

Hydrophobic seed protein; This domain has a four-helix bundle structure. It contains four disulfide bonds, of which three function to keep the C- and N-terminal parts of the molecule in place.


Pssm-ID: 434033  Cd Length: 85  Bit Score: 73.25  E-value: 1.60e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 685307561   26 TCPRNALQIGACTNVLNAIDLTLGnpPPPVPPCCSLIAGLADLEAAVCLCTALDVNVLGN-NVHLPIDISVLLNACSRFA 104
Cdd:pfam14547   1 TCPRDALKLGACVNVLGLINITLG--DQRASPCCTLVRGLADADAAACLCTTVRARLLNLlPITIPIALNLLLRACGRRP 78


                  ....*..
gi 685307561  105 PPSFQCP 111
Cdd:pfam14547  79 PPGFTCP 85
 
Name Accession Description Interval E-value
HPS_like cd01958
HPS_like: Hydrophobic Protein from Soybean (HPS)-like subfamily; composed of proteins with ...
 25-110 1.41e-21

HPS_like: Hydrophobic Protein from Soybean (HPS)-like subfamily; composed of proteins with similarity to HPS, a small hydrophobic protein with unknown function related to cereal-type alpha-amylase inhibitors and lipid transfer proteins. In addition to HPS, members of this subfamily include a hybrid proline-rich protein (HyPRP) from maize, a dark-inducible protein (LeDI-2) from Lithospermum erythrorhizon, maize ZRP3 protein, and rice RcC3 protein. HyPRP is an embryo-specific protein that contains an N-terminal proline-rich domain and a C-terminal HPS-like cysteine-rich domain. It has been suggested that HyPRP may be involved in the stability and defense of the developing embryo. LeDI-2 is a root-specific protein that may be involved in regulating the biosynthesis of shikonin derivatives in L. erythrorhizon. Maize ZRP3 and rice RcC3 are root-specific proteins whose functions are yet to be determined. It has been reported that ZRP3 largely accumulates in a distinct subset of cortical cells.


Pssm-ID: 238924  Cd Length: 85  Bit Score: 81.22  E-value: 1.41e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 685307561  25 GTCPRNALQIGACTNVLNAIDLTLGNPPPPVppCCSLIAGLADLEAAVCLCTALDVNVLGNNVHLPIDISVLLNACSRFA 104
Cdd:cd01958    2 PTCPRDALKLGVCANVLGLSLLLLGTPAVQP--CCPLIGGLADLDAAVCLCTAIKANILGISINIPVALSLLLNSCGRNV 79


                 ....*.
gi 685307561 105 PPSFQC 110
Cdd:cd01958   80 PPGFTC 85
Hydrophob_seed pfam14547
Hydrophobic seed protein; This domain has a four-helix bundle structure. It contains four ...
 26-111 1.60e-18

Hydrophobic seed protein; This domain has a four-helix bundle structure. It contains four disulfide bonds, of which three function to keep the C- and N-terminal parts of the molecule in place.


Pssm-ID: 434033  Cd Length: 85  Bit Score: 73.25  E-value: 1.60e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 685307561   26 TCPRNALQIGACTNVLNAIDLTLGnpPPPVPPCCSLIAGLADLEAAVCLCTALDVNVLGN-NVHLPIDISVLLNACSRFA 104
Cdd:pfam14547   1 TCPRDALKLGACVNVLGLINITLG--DQRASPCCTLVRGLADADAAACLCTTVRARLLNLlPITIPIALNLLLRACGRRP 78


                  ....*..
gi 685307561  105 PPSFQCP 111
Cdd:pfam14547  79 PPGFTCP 85
Tryp_alpha_amyl pfam00234
Protease inhibitor/seed storage/LTP family; This family is composed of trypsin-alpha amylase ...
 27-110 2.93e-04

Protease inhibitor/seed storage/LTP family; This family is composed of trypsin-alpha amylase inhibitors, seed storage proteins and lipid transfer proteins from plants.


Pssm-ID: 425543  Cd Length: 74  Bit Score: 36.39  E-value: 2.93e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 685307561   27 CPRNALQIGACTNVLNaidltlGNPPPPVPPCCSLIAGLAdleaAVCLCTALDVNVLGNNVHLPIDISVLLNACSRFAPP 106
Cdd:pfam00234   1 CGQVLLCLAPCLGYLQ------GGCQVPSQQCCSQLRQLQ----AQCRCTAIRAIVLGIEGINPQAAASLPSMCGVNVPY 70


                  ....
gi 685307561  107 SFQC 110
Cdd:pfam00234  71 GIDC 74
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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