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Conserved domains on  [gi|685274283|ref|XP_009128177|]
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protein CUP-SHAPED COTYLEDON 3 [Brassica rapa]

Protein Classification

NAC family transcription factor( domain architecture ID 10492350)

NAC (NAM, ATAF1,2, CUC2) family transcription factors are plant-specific transcription factors which has been implicated in diverse processes, including developmental programs, defense and abiotic stress responses

CATH:  3.30.310.150
Gene Ontology:  GO:0043565|GO:0006950|GO:0003700
PubMed:  36909440|15708345|18952777
SCOP:  4000947|3000220

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
NAM pfam02365
No apical meristem (NAM) protein; This is a family of no apical meristem (NAM) proteins these ...
 22-149 5.58e-69

No apical meristem (NAM) protein; This is a family of no apical meristem (NAM) proteins these are plant development proteins. Mutations in NAM result in the failure to develop a shoot apical meristem in petunia embryos. NAM is indicated as having a role in determining positions of meristems and primordial. One member of this family NAP (NAC-like, activated by AP3/PI) is encoded by the target genes of the AP3/PI transcriptional activators and functions in the transition between growth by cell division and cell expansion in stamens and petals.


:

Pssm-ID: 460539  Cd Length: 122  Bit Score: 210.53  E-value: 5.58e-69
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 685274283   22 PPGFRFHPTDEELITFYLASKVFHGRLCGIHIAEVDLNRCEPWELPEMAKMGEREWYFYSLRDRKYPTGLRTNRAtTAGY 101
Cdd:pfam02365   1 PPGFRFHPTDEELVTHYLRRKVLGKPLPLDFIPEVDLYKLEPWDLPGKAKGGGNEWYFFSPRDRKYPNGSRTNRA-TGGY 79

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 685274283  102 WKATGKDKEIFSGGGggaLVGMKKTLVFYKGRapRGLKSKWVMHEYRL 149
Cdd:pfam02365  80 WKATGKDKPIKSNGV---LVGMKKTLVFYKGR--KGEKTGWVMHEYRL 122
 
Name Accession Description Interval E-value
NAM pfam02365
No apical meristem (NAM) protein; This is a family of no apical meristem (NAM) proteins these ...
 22-149 5.58e-69

No apical meristem (NAM) protein; This is a family of no apical meristem (NAM) proteins these are plant development proteins. Mutations in NAM result in the failure to develop a shoot apical meristem in petunia embryos. NAM is indicated as having a role in determining positions of meristems and primordial. One member of this family NAP (NAC-like, activated by AP3/PI) is encoded by the target genes of the AP3/PI transcriptional activators and functions in the transition between growth by cell division and cell expansion in stamens and petals.


Pssm-ID: 460539  Cd Length: 122  Bit Score: 210.53  E-value: 5.58e-69
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 685274283   22 PPGFRFHPTDEELITFYLASKVFHGRLCGIHIAEVDLNRCEPWELPEMAKMGEREWYFYSLRDRKYPTGLRTNRAtTAGY 101
Cdd:pfam02365   1 PPGFRFHPTDEELVTHYLRRKVLGKPLPLDFIPEVDLYKLEPWDLPGKAKGGGNEWYFFSPRDRKYPNGSRTNRA-TGGY 79

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 685274283  102 WKATGKDKEIFSGGGggaLVGMKKTLVFYKGRapRGLKSKWVMHEYRL 149
Cdd:pfam02365  80 WKATGKDKPIKSNGV---LVGMKKTLVFYKGR--KGEKTGWVMHEYRL 122
 
Name Accession Description Interval E-value
NAM pfam02365
No apical meristem (NAM) protein; This is a family of no apical meristem (NAM) proteins these ...
 22-149 5.58e-69

No apical meristem (NAM) protein; This is a family of no apical meristem (NAM) proteins these are plant development proteins. Mutations in NAM result in the failure to develop a shoot apical meristem in petunia embryos. NAM is indicated as having a role in determining positions of meristems and primordial. One member of this family NAP (NAC-like, activated by AP3/PI) is encoded by the target genes of the AP3/PI transcriptional activators and functions in the transition between growth by cell division and cell expansion in stamens and petals.


Pssm-ID: 460539  Cd Length: 122  Bit Score: 210.53  E-value: 5.58e-69
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 685274283   22 PPGFRFHPTDEELITFYLASKVFHGRLCGIHIAEVDLNRCEPWELPEMAKMGEREWYFYSLRDRKYPTGLRTNRAtTAGY 101
Cdd:pfam02365   1 PPGFRFHPTDEELVTHYLRRKVLGKPLPLDFIPEVDLYKLEPWDLPGKAKGGGNEWYFFSPRDRKYPNGSRTNRA-TGGY 79

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 685274283  102 WKATGKDKEIFSGGGggaLVGMKKTLVFYKGRapRGLKSKWVMHEYRL 149
Cdd:pfam02365  80 WKATGKDKPIKSNGV---LVGMKKTLVFYKGR--KGEKTGWVMHEYRL 122
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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