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Conserved domains on  [gi|68235928|gb|AAY88300|]
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acid phosphatase type V, partial [Rhynchomys isarogensis]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
MPP_superfamily super family cl13995
metallophosphatase superfamily, metallophosphatase domain; Metallophosphatases (MPPs), also ...
1-42 3.24e-18

metallophosphatase superfamily, metallophosphatase domain; Metallophosphatases (MPPs), also known as metallophosphoesterases, phosphodiesterases (PDEs), binuclear metallophosphoesterases, and dimetal-containing phosphoesterases (DMPs), represent a diverse superfamily of enzymes with a conserved domain containing an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. This superfamily includes: the phosphoprotein phosphatases (PPPs), Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.


The actual alignment was detected with superfamily member cd07378:

Pssm-ID: 472684 [Multi-domain]  Cd Length: 286  Bit Score: 73.90  E-value: 3.24e-18
                        10        20        30        40
                ....*....|....*....|....*....|....*....|..
gi 68235928   1 QIMGADFIMSLGDNFYFTGVHDANDKRFQETFEDVFSDRVRN 42
Cdd:cd07378  33 SKLGIDFILSLGDNFYDDGVKDVDDPRFQETFEDVYSAPSLQ 74
 
Name Accession Description Interval E-value
MPP_ACP5 cd07378
Homo sapiens acid phosphatase 5 and related proteins, metallophosphatase domain; Acid ...
1-42 3.24e-18

Homo sapiens acid phosphatase 5 and related proteins, metallophosphatase domain; Acid phosphatase 5 (ACP5) removes the mannose 6-phosphate recognition marker from lysosomal proteins. The exact site of dephosphorylation is not clear. Evidence suggests dephosphorylation may take place in a prelysosomal compartment as well as in the lysosome. ACP5 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.


Pssm-ID: 277324 [Multi-domain]  Cd Length: 286  Bit Score: 73.90  E-value: 3.24e-18
                        10        20        30        40
                ....*....|....*....|....*....|....*....|..
gi 68235928   1 QIMGADFIMSLGDNFYFTGVHDANDKRFQETFEDVFSDRVRN 42
Cdd:cd07378  33 SKLGIDFILSLGDNFYDDGVKDVDDPRFQETFEDVYSAPSLQ 74
PTZ00422 PTZ00422
glideosome-associated protein 50; Provisional
7-38 3.94e-04

glideosome-associated protein 50; Provisional


Pssm-ID: 185607 [Multi-domain]  Cd Length: 394  Bit Score: 35.19  E-value: 3.94e-04
                         10        20        30
                 ....*....|....*....|....*....|..
gi 68235928    7 FIMSLGDNFyFTGVHDANDKRFQETFEDVFSD 38
Cdd:PTZ00422  60 FLVSPGSNF-PGGVDGLNDPKWKHCFENVYSE 90
 
Name Accession Description Interval E-value
MPP_ACP5 cd07378
Homo sapiens acid phosphatase 5 and related proteins, metallophosphatase domain; Acid ...
1-42 3.24e-18

Homo sapiens acid phosphatase 5 and related proteins, metallophosphatase domain; Acid phosphatase 5 (ACP5) removes the mannose 6-phosphate recognition marker from lysosomal proteins. The exact site of dephosphorylation is not clear. Evidence suggests dephosphorylation may take place in a prelysosomal compartment as well as in the lysosome. ACP5 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.


Pssm-ID: 277324 [Multi-domain]  Cd Length: 286  Bit Score: 73.90  E-value: 3.24e-18
                        10        20        30        40
                ....*....|....*....|....*....|....*....|..
gi 68235928   1 QIMGADFIMSLGDNFYFTGVHDANDKRFQETFEDVFSDRVRN 42
Cdd:cd07378  33 SKLGIDFILSLGDNFYDDGVKDVDDPRFQETFEDVYSAPSLQ 74
PTZ00422 PTZ00422
glideosome-associated protein 50; Provisional
7-38 3.94e-04

glideosome-associated protein 50; Provisional


Pssm-ID: 185607 [Multi-domain]  Cd Length: 394  Bit Score: 35.19  E-value: 3.94e-04
                         10        20        30
                 ....*....|....*....|....*....|..
gi 68235928    7 FIMSLGDNFyFTGVHDANDKRFQETFEDVFSD 38
Cdd:PTZ00422  60 FLVSPGSNF-PGGVDGLNDPKWKHCFENVYSE 90
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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