NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|6807704|emb|CAB70668|]
View 

hypothetical protein, partial [Homo sapiens]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
TMEM18 pfam14770
Transmembrane protein 18; The function of this family is not known, however it is predicted to ...
 47-158 8.67e-59

Transmembrane protein 18; The function of this family is not known, however it is predicted to be a three-pass membrane protein.


:

Pssm-ID: 405460  Cd Length: 118  Bit Score: 178.94  E-value: 8.67e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6807704     47 AVLTQTDWTEPWLMGLATFHALCVLLTCLSSRSYRLQIGHFLCLVILVYCAEYINEAAAMNWRLFSKYQYFDSRGMFISI 126
Cdd:pfam14770   1 GFLHAVDWSEPWLIGLIAFHVLLLVLALLTRRSYNFQMVLFLLLLLLVYFAEYINELAARNWRSFSKQNYFDSRGLFISV 80

                          90       100       110
                  ....*....|....*....|....*....|..
gi 6807704    127 VFSAPLLVNAMIIVVMWVWKTLNVMTDLKNAQ 158
Cdd:pfam14770  81 VFSGPLLLNCLIILVNWLYQTVSLMVELKRAQ 112
 
Name Accession Description Interval E-value
TMEM18 pfam14770
Transmembrane protein 18; The function of this family is not known, however it is predicted to ...
 47-158 8.67e-59

Transmembrane protein 18; The function of this family is not known, however it is predicted to be a three-pass membrane protein.


Pssm-ID: 405460  Cd Length: 118  Bit Score: 178.94  E-value: 8.67e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6807704     47 AVLTQTDWTEPWLMGLATFHALCVLLTCLSSRSYRLQIGHFLCLVILVYCAEYINEAAAMNWRLFSKYQYFDSRGMFISI 126
Cdd:pfam14770   1 GFLHAVDWSEPWLIGLIAFHVLLLVLALLTRRSYNFQMVLFLLLLLLVYFAEYINELAARNWRSFSKQNYFDSRGLFISV 80

                          90       100       110
                  ....*....|....*....|....*....|..
gi 6807704    127 VFSAPLLVNAMIIVVMWVWKTLNVMTDLKNAQ 158
Cdd:pfam14770  81 VFSGPLLLNCLIILVNWLYQTVSLMVELKRAQ 112
 
Name Accession Description Interval E-value
TMEM18 pfam14770
Transmembrane protein 18; The function of this family is not known, however it is predicted to ...
 47-158 8.67e-59

Transmembrane protein 18; The function of this family is not known, however it is predicted to be a three-pass membrane protein.


Pssm-ID: 405460  Cd Length: 118  Bit Score: 178.94  E-value: 8.67e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6807704     47 AVLTQTDWTEPWLMGLATFHALCVLLTCLSSRSYRLQIGHFLCLVILVYCAEYINEAAAMNWRLFSKYQYFDSRGMFISI 126
Cdd:pfam14770   1 GFLHAVDWSEPWLIGLIAFHVLLLVLALLTRRSYNFQMVLFLLLLLLVYFAEYINELAARNWRSFSKQNYFDSRGLFISV 80

                          90       100       110
                  ....*....|....*....|....*....|..
gi 6807704    127 VFSAPLLVNAMIIVVMWVWKTLNVMTDLKNAQ 158
Cdd:pfam14770  81 VFSGPLLLNCLIILVNWLYQTVSLMVELKRAQ 112
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH