|
Name |
Accession |
Description |
Interval |
E-value |
| 3a01204 |
TIGR00955 |
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, ... |
12-616 |
1.07e-133 |
|
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273361 [Multi-domain] Cd Length: 617 Bit Score: 404.81 E-value: 1.07e-133
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 12 SVKQSSGFLCKRKTvEKKILHNVYGIMKPG-LNAILGPTGSGKSSLLDVLAARKhPAGL--SGEVLIDGIP-QPPNFKCI 87
Cdd:TIGR00955 23 LVSRLRGCFCRERP-RKHLLKNVSGVAKPGeLLAVMGSSGAGKTTLMNALAFRS-PKGVkgSGSVLLNGMPiDAKEMRAI 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 88 SGYVVQDDVVMGTMTVRENLHFSAALRLPSSISVKEKEDRVTQIISELGLSKVADAKVGTE-MIRGVSGGERKRTSIGME 166
Cdd:TIGR00955 101 SAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPgRVKGLSGGERKRLAFASE 180
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 167 LITEPPVLFLDEPTTGLDASTANAVLMLLKKLSRRGRTIIFSIHQPRYSIFKLFDSLTLLALGKVLYHGPAKQALEYFSS 246
Cdd:TIGR00955 181 LLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSD 260
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 247 IGYECEPFNNPADFFLDIINGDSTSVAARKEdhrpvdtgkednlgsnVVDVLHQKYLNSSLYQSTKEALRKVELGRGSKQ 326
Cdd:TIGR00955 261 LGHPCPENYNPADFYVQVLAVIPGSENESRE----------------RIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLV 324
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 327 RVSKQEHEITYANGFLTQLYWVSKRSLKNLVRNP---QASFAQvvTIILALVVGAIFFGVKLDRSGIQNRVGSLFFVTTN 403
Cdd:TIGR00955 325 KDSENMEGIGYNASWWTQFYALLKRSWLSVLRDPlllKVRLIQ--TMMTAILIGLIYLGQGLTQKGVQNINGALFLFLTN 402
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 404 QCFSSV-SAIELFIRDKKLFVHQYTSGYYRVSAYFLALMIGDlLPMRTAPAIIFSCISYWMIGYQAVTGRFFFFMLTLVM 482
Cdd:TIGR00955 403 MTFQNVfPVINVFTAELPVFLRETRSGLYRVSAYFLAKTIAE-LPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTL 481
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 483 VSYTATAMSLAISAGMDVVAVANLLITICFVLMLIFSGLLVNLPSIMGWLNWLQYFSIPRY---GLTVSSCPPDISGEIL 559
Cdd:TIGR00955 482 VANVATSFGYLISCAFSSTSMALTVGPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYgneGLLINQWSDVDNIECT 561
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*....
gi 677296704 560 apysNTNICLmfFCRCSGEAYL--CSQGITPttwaMWENIVALFCMTVIFLIIAYAKLR 616
Cdd:TIGR00955 562 ----SANTTG--PCPSSGEVILetLSFRNAD----LYLDLIGLVILIFFFRLLAYFALR 610
|
|
| ABCG_EPDR |
cd03213 |
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette ... |
1-235 |
1.07e-89 |
|
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily; ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Pssm-ID: 213180 [Multi-domain] Cd Length: 194 Bit Score: 275.97 E-value: 1.07e-89
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 1 GSVVSFHNIQYSVKQSSGflckrkTVEKKILHNVYGIMKPG-LNAILGPTGSGKSSLLDVLAARKHPAGLSGEVLIDGIP 79
Cdd:cd03213 1 GVTLSFRNLTVTVKSSPS------KSGKQLLKNVSGKAKPGeLTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRP 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 80 QPP-NFKCISGYVVQDDVVMGTMTVRENLHFSAALrlpssisvkekedrvtqiiselglskvadakvgtemiRGVSGGER 158
Cdd:cd03213 75 LDKrSFRKIIGYVPQDDILHPTLTVRETLMFAAKL-------------------------------------RGLSGGER 117
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 677296704 159 KRTSIGMELITEPPVLFLDEPTTGLDASTANAVLMLLKKLSRRGRTIIFSIHQPRYSIFKLFDSLTLLALGKVLYHG 235
Cdd:cd03213 118 KRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194
|
|
| PLN03211 |
PLN03211 |
ABC transporter G-25; Provisional |
6-572 |
6.89e-86 |
|
ABC transporter G-25; Provisional
Pssm-ID: 215634 [Multi-domain] Cd Length: 659 Bit Score: 281.38 E-value: 6.89e-86
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 6 FHNIQYSVK----QSSGFLCKR-------------KTVEKKILHNVYGIMKPG-LNAILGPTGSGKSSLLDVLAARKHPA 67
Cdd:PLN03211 42 FMDVCYRVKfenmKNKGSNIKRilghkpkisdetrQIQERTILNGVTGMASPGeILAVLGPSGSGKSTLLNALAGRIQGN 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 68 GLSGEVLI-DGIPQPPNFKCIsGYVVQDDVVMGTMTVRENLHFSAALRLPSSISVKEKEDRVTQIISELGLSKVADAKVG 146
Cdd:PLN03211 122 NFTGTILAnNRKPTKQILKRT-GFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIG 200
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 147 TEMIRGVSGGERKRTSIGMELITEPPVLFLDEPTTGLDASTANAVLMLLKKLSRRGRTIIFSIHQPRYSIFKLFDSLTLL 226
Cdd:PLN03211 201 NSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVL 280
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 227 ALGKVLYHGPAKQALEYFSSIGYECEPFNNPADFFLDIING----DSTSvaarkEDHRPvdtgkednlgsNVVDVLHQKY 302
Cdd:PLN03211 281 SEGRCLFFGKGSDAMAYFESVGFSPSFPMNPADFLLDLANGvcqtDGVS-----EREKP-----------NVKQSLVASY 344
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 303 lNSSLYQSTKEALRKVELGRGSKQRVSKQEHEITYANGFLTQLYWVSKRSL---KNLVRNPQASFAQVVtiILALVVGAI 379
Cdd:PLN03211 345 -NTLLAPKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQFSIllqRSLKERKHESFNTLR--VFQVIAAAL 421
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 380 FFGVKL---DRSGIQNRVGSLFFVTTN-QCFSSVSAIELFIRDKKLFVHQYTSGYYRVSAYFLALMIGDlLPMRTAPAII 455
Cdd:PLN03211 422 LAGLMWwhsDFRDVQDRLGLLFFISIFwGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGD-LPMELILPTI 500
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 456 FSCISYWMIGYQAVTGRFFFFMLTLVMVSYTATAMSLAISAGMDVVAVANLLITICFVLMLIFSGLLVN-LPSIMGWLNW 534
Cdd:PLN03211 501 FLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGFYVHkLPSCMAWIKY 580
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 677296704 535 L-------------QYFSIPR----------YGLTVSSC---PPDISGEILAPYSNTNICLMFF 572
Cdd:PLN03211 581 IsttfysyrllinvQYGEGKRissllgcslpHGSDRASCkfvEEDVAGQISPATSVSVLIFMFV 644
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
24-548 |
3.91e-84 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 287.78 E-value: 3.91e-84
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 24 KTVEKKILHNVYGIMKPG-LNAILGPTGSGKSSLLDVLAARKHpAGL--SGEVLIDGIPQPPNFKCISGYVVQDDVVMGT 100
Cdd:TIGR00956 772 KKEKRVILNNVDGWVKPGtLTALMGASGAGKTTLLNVLAERVT-TGVitGGDRLVNGRPLDSSFQRSIGYVQQQDLHLPT 850
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 101 MTVRENLHFSAALRLPSSISVKEKEDRVTQIISELGLSKVADAKVGTEMIrGVSGGERKRTSIGMELITEPPVL-FLDEP 179
Cdd:TIGR00956 851 STVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGE-GLNVEQRKRLTIGVELVAKPKLLlFLDEP 929
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 180 TTGLDASTANAVLMLLKKLSRRGRTIIFSIHQPRYSIFKLFDSLTLLALG-KVLYHGP----AKQALEYFSSIG-YECEP 253
Cdd:TIGR00956 930 TSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGgQTVYFGDlgenSHTIINYFEKHGaPKCPE 1009
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 254 FNNPADFFLDIINGDSTSVAarKEDHrpvdtgkednlgsnvvdvlHQKYLNSSLYQSTKEALRKVELGRGSKQRVSKQEH 333
Cdd:TIGR00956 1010 DANPAEWMLEVIGAAPGAHA--NQDY-------------------HEVWRNSSEYQAVKNELDRLEAELSKAEDDNDPDA 1068
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 334 EITYANGFLTQLYWVSKRSLKNLVRNPQASFAQ-VVTIILALVVGAIFFGVKLDRSGIQNRVGSLF-----FVTTNQcfs 407
Cdd:TIGR00956 1069 LSKYAASLWYQFKLVLWRTFQQYWRTPDYLYSKfFLTIFAALFIGFTFFKVGTSLQGLQNQMFAVFmatvlFNPLIQ--- 1145
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 408 svSAIELFIRDKKLF-VHQYTSGYYRVSAYFLALMIGDlLPMRTAPAIIFSCISYWMIGY-------QAVTGRFFFFMLT 479
Cdd:TIGR00956 1146 --QYLPPFVAQRDLYeVRERPSRTFSWLAFIAAQITVE-IPYNLVAGTIFFFIWYYPVGFywnasktGQVHERGVLFWLL 1222
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 677296704 480 LVMVSYTATAMSLAISAGMDVVAVANLLITICFVLMLIFSGLLVNLPSIMGWlnWLQYFSIPRYGLTVS 548
Cdd:TIGR00956 1223 STMFFLYFSTLGQMVISFNPNADNAAVLASLLFTMCLSFCGVLAPPSRMPGF--WIFMYRCSPFTYLVQ 1289
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
18-544 |
6.97e-80 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 275.45 E-value: 6.97e-80
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 18 GFLCKRKTVEKKILHNVYGIMKPG-LNAILGPTGSGKSSLLDVLAARKH--PAGLSGEVLIDGIPQP---PNFKCISGYV 91
Cdd:TIGR00956 64 KLKKFRDTKTFDILKPMDGLIKPGeLTVVLGRPGSGCSTLLKTIASNTDgfHIGVEGVITYDGITPEeikKHYRGDVVYN 143
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 92 VQDDVVMGTMTVRENLHFSAALRLPSS----ISVKEKEDRVTQII-SELGLSKVADAKVGTEMIRGVSGGERKRTSIGME 166
Cdd:TIGR00956 144 AETDVHFPHLTVGETLDFAARCKTPQNrpdgVSREEYAKHIADVYmATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEA 223
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 167 LITEPPVLFLDEPTTGLDASTANAVLMLLKKLSRRGRTIIF-SIHQPRYSIFKLFDSLTLLALGKVLYHGPAKQALEYFS 245
Cdd:TIGR00956 224 SLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLvAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYFE 303
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 246 SIGYECEPFNNPADFFldiingdsTSVAARKEdhRPVDTGKEDNLgSNVVDVLHQKYLNSSLYQ---------------- 309
Cdd:TIGR00956 304 KMGFKCPDRQTTADFL--------TSLTSPAE--RQIKPGYEKKV-PRTPQEFETYWRNSPEYAqlmkeideyldrcses 372
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 310 STKEALRKVELGRGSKQRVSKQEHEITYangfLTQLYWVSKRSLKNLVRNPQASFAQVVT-IILALVVGAIFFGVKLDRS 388
Cdd:TIGR00956 373 DTKEAYRESHVAKQSKRTRPSSPYTVSF----SMQVKYCLARNFLRMKGNPSFTLFMVFGnIIMALILSSVFYNLPKNTS 448
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 389 GIQNRVGSLFFVTTNQCFSSVSAIELFIRDKKLFVHQYTSGYYRVSAYFLALMIGDlLPMRTAPAIIFSCISYWMIGYQA 468
Cdd:TIGR00956 449 DFYSRGGALFFAILFNAFSSLLEIASMYEARPIVEKHRKYALYHPSADAIASIISE-IPFKIIESVVFNIILYFMVNFRR 527
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 677296704 469 VTGRFFFFMLTLVMVSYTATAMSLAISAGMDVVAVANLLITICFVLMLIFSGLLVNLPSIMGWLNWLQYFSIPRYG 544
Cdd:TIGR00956 528 TAGRFFFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYA 603
|
|
| ABCG_White |
cd03234 |
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ... |
10-235 |
9.68e-69 |
|
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners.
Pssm-ID: 213201 [Multi-domain] Cd Length: 226 Bit Score: 222.92 E-value: 9.68e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 10 QYSVKQSSGFLC-KRKTVEKKILHNVYGIMKPG-LNAILGPTGSGKSSLLDVLAARKHPAG-LSGEVLIDGIP-QPPNFK 85
Cdd:cd03234 1 QRVLPWWDVGLKaKNWNKYARILNDVSLHVESGqVMAILGSSGSGKTTLLDAISGRVEGGGtTSGQILFNGQPrKPDQFQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 86 CISGYVVQDDVVMGTMTVRENLHFSAALRLPSSISVKEKEDRVTQiiseLGLSKVADAKVGTEMIRGVSGGERKRTSIGM 165
Cdd:cd03234 81 KCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVED----VLLRDLALTRIGGNLVKGISGGERRRVSIAV 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 166 ELITEPPVLFLDEPTTGLDASTANAVLMLLKKLSRRGRTIIFSIHQPRYSIFKLFDSLTLLALGKVLYHG 235
Cdd:cd03234 157 QLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226
|
|
| ABCG_PDR_domain2 |
cd03232 |
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding ... |
1-235 |
2.28e-63 |
|
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213199 [Multi-domain] Cd Length: 192 Bit Score: 207.48 E-value: 2.28e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 1 GSVVSFHNIQYSVKQssgflckrKTVEKKILHNVYGIMKPG-LNAILGPTGSGKSSLLDVLAARKHPAGLSGEVLIDGIP 79
Cdd:cd03232 1 GSVLTWKNLNYTVPV--------KGGKRQLLNNISGYVKPGtLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRP 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 80 QPPNFKCISGYVVQDDVVMGTMTVRENLHFSAALrlpssisvkekedrvtqiiselglskvadakvgtemiRGVSGGERK 159
Cdd:cd03232 73 LDKNFQRSTGYVEQQDVHSPNLTVREALRFSALL-------------------------------------RGLSVEQRK 115
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 677296704 160 RTSIGMELITEPPVLFLDEPTTGLDASTANAVLMLLKKLSRRGRTIIFSIHQPRYSIFKLFDSLTLLAL-GKVLYHG 235
Cdd:cd03232 116 RLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRgGKTVYFG 192
|
|
| PLN03140 |
PLN03140 |
ABC transporter G family member; Provisional |
4-548 |
1.12e-59 |
|
ABC transporter G family member; Provisional
Pssm-ID: 215599 [Multi-domain] Cd Length: 1470 Bit Score: 216.64 E-value: 1.12e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 4 VSFHNIQYSVKQSSGFlcKRKTVEK---KILHNVYGIMKPG-LNAILGPTGSGKSSLLDVLAARKHPAGLSGEVLIDGIP 79
Cdd:PLN03140 868 MSFDDVNYFVDMPAEM--KEQGVTEdrlQLLREVTGAFRPGvLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFP 945
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 80 Q-PPNFKCISGYVVQDDVVMGTMTVRENLHFSAALRLPSSISVKEKEDRVTQIISELGLSKVADAKVGTEMIRGVSGGER 158
Cdd:PLN03140 946 KkQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQR 1025
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 159 KRTSIGMELITEPPVLFLDEPTTGLDASTANAVLMLLKKLSRRGRTIIFSIHQPRYSIFKLFDSLTLLAL-GKVLYHGP- 236
Cdd:PLN03140 1026 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRgGQVIYSGPl 1105
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 237 ---AKQALEYFSSIG--YECEPFNNPADFFLDIingdsTSVAArkedhrpvdtgkEDNLGsnvVDvLHQKYLNSSLYQST 311
Cdd:PLN03140 1106 grnSHKIIEYFEAIPgvPKIKEKYNPATWMLEV-----SSLAA------------EVKLG---ID-FAEHYKSSSLYQRN 1164
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 312 KEALRKVELgrgSKQRVSKQEHEITYANGFLTQL-------YWVSKRSLK-NLVRNpqasfaqVVTIILALVVGAIFF-- 381
Cdd:PLN03140 1165 KALVKELST---PPPGASDLYFATQYSQSTWGQFksclwkqWWTYWRSPDyNLVRF-------FFTLAAALMVGTIFWkv 1234
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 382 GVKLDRSGIQNRV-----GSLFFVTTNQCfSSVSAIelFIRDKKLFVHQYTSGYYRVSAYFLALMIGDlLPMRTAPAIIF 456
Cdd:PLN03140 1235 GTKRSNANDLTMVigamyAAVLFVGINNC-STVQPM--VAVERTVFYRERAAGMYSALPYAIAQVVCE-IPYVLIQTTYY 1310
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 457 SCISYWMIGYQAVTGRFFFFM----LTLVMVSYTATaMSLAISAGMDVVAVanlLITICFVLMLIFSGLLVNLPSIMGWl 532
Cdd:PLN03140 1311 TLIVYAMVAFEWTAAKFFWFYfisfFSFLYFTYYGM-MTVSLTPNQQVAAI---FAAAFYGLFNLFSGFFIPRPKIPKW- 1385
|
570 580
....*....|....*....|.
gi 677296704 533 nWLQYFSI-----PRYGLTVS 548
Cdd:PLN03140 1386 -WVWYYWIcpvawTVYGLIVS 1405
|
|
| PLN03140 |
PLN03140 |
ABC transporter G family member; Provisional |
24-607 |
4.96e-46 |
|
ABC transporter G family member; Provisional
Pssm-ID: 215599 [Multi-domain] Cd Length: 1470 Bit Score: 175.80 E-value: 4.96e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 24 KTVEKKILHNVYGIMKPG-LNAILGPTGSGKSSLLDVLAARKHPA-GLSGEVLIDG------IPQPpnfkcISGYVVQDD 95
Cdd:PLN03140 174 KKTKLTILKDASGIIKPSrMTLLLGPPSSGKTTLLLALAGKLDPSlKVSGEITYNGyrlnefVPRK-----TSAYISQND 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 96 VVMGTMTVRENLHFSAALR-------LPSSISVKEKEDRV-------------------TQIISE-----LGLSKVADAK 144
Cdd:PLN03140 249 VHVGVMTVKETLDFSARCQgvgtrydLLSELARREKDAGIfpeaevdlfmkatamegvkSSLITDytlkiLGLDICKDTI 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 145 VGTEMIRGVSGGERKRTSIGmELITEP-PVLFLDEPTTGLDASTANAVLMLLKKLSRRGR-TIIFSIHQPRYSIFKLFDS 222
Cdd:PLN03140 329 VGDEMIRGISGGQKKRVTTG-EMIVGPtKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEaTVLMSLLQPAPETFDLFDD 407
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 223 LTLLALGKVLYHGPAKQALEYFSSIGYECEPFNNPADFFLDiingdstsVAARKED-------HRP---------VDTGK 286
Cdd:PLN03140 408 IILLSEGQIVYQGPRDHILEFFESCGFKCPERKGTADFLQE--------VTSKKDQeqywadrNKPyryisvsefAERFK 479
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 287 EDNLGSNVVDVLHQKYLNSslyQSTKEALRKvelgrgSKQRVSKQEheityangfLTQLYWvsKRSLKNLVRNPQASFAQ 366
Cdd:PLN03140 480 SFHVGMQLENELSVPFDKS---QSHKAALVF------SKYSVPKME---------LLKACW--DKEWLLMKRNAFVYVFK 539
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 367 VVT-IILALVVGAIFFGVKLdrsGIQNR------VGSLFFVTTNQCFSSVSAIELFIRDKKLFVHQYTSGYYRVSAYFL- 438
Cdd:PLN03140 540 TVQiIIVAAIASTVFLRTEM---HTRNEedgalyIGALLFSMIINMFNGFAELALMIQRLPVFYKQRDLLFHPPWTFTLp 616
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 439 ALMIGdlLPMRTAPAIIFSCISYWMIGYQAVTGRFFFFMLTLVMVSYTATAMSLAISAGMDVVAVANLLITICFVLMLIF 518
Cdd:PLN03140 617 TFLLG--IPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLIASVCRTMIIANTGGALVLLLVFLL 694
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 519 SGLLVNLPSIMGWLNWLQYFSIPRYG---LTVSscppdisgEILAPY------SNTNICLmffcrcsGEAYLCSQGI-TP 588
Cdd:PLN03140 695 GGFILPKGEIPNWWEWAYWVSPLSYGfnaLAVN--------EMFAPRwmnkmaSDNSTRL-------GTAVLNIFDVfTD 759
|
650
....*....|....*....
gi 677296704 589 TTWaMWENIVALFCMTVIF 607
Cdd:PLN03140 760 KNW-YWIGVGALLGFTILF 777
|
|
| CcmA |
COG1131 |
ABC-type multidrug transport system, ATPase component [Defense mechanisms]; |
44-244 |
4.79e-44 |
|
ABC-type multidrug transport system, ATPase component [Defense mechanisms];
Pssm-ID: 440746 [Multi-domain] Cd Length: 236 Bit Score: 157.15 E-value: 4.79e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 44 AILGPTGSGKSSLLDVLAarkhpaGL----SGEVLIDGIP---QPPNFKCISGYVVQDDVVMGTMTVRENLHFSAALRlp 116
Cdd:COG1131 30 GLLGPNGAGKTTTIRMLL------GLlrptSGEVRVLGEDvarDPAEVRRRIGYVPQEPALYPDLTVRENLRFFARLY-- 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 117 sSISVKEKEDRVTQIISELGLSKVADAKVGTemirgVSGGERKRTSIGMELITEPPVLFLDEPTTGLDASTANAVLMLLK 196
Cdd:COG1131 102 -GLPRKEARERIDELLELFGLTDAADRKVGT-----LSGGMKQRLGLALALLHDPELLILDEPTSGLDPEARRELWELLR 175
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 677296704 197 KLSRRGRTIIFSIHQPRYsIFKLFDSLTLLALGKVLYHGPAKQALEYF 244
Cdd:COG1131 176 ELAAEGKTVLLSTHYLEE-AERLCDRVAIIDKGRIVADGTPDELKARL 222
|
|
| NatA |
COG4555 |
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, ... |
27-268 |
1.18e-41 |
|
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 443618 [Multi-domain] Cd Length: 243 Bit Score: 150.78 E-value: 1.18e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 27 EKKILHNV-YGIMKPGLNAILGPTGSGKSSLLDVLAARKHPAglSGEVLIDGIP---QPPNFKCISGYVVQDDVVMGTMT 102
Cdd:COG4555 13 KVPALKDVsFTAKDGEITGLLGPNGAGKTTLLRMLAGLLKPD--SGSILIDGEDvrkEPREARRQIGVLPDERGLYDRLT 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 103 VRENLHFSAALRlpsSISVKEKEDRVTQIISELGLSKVADAKVGtemirGVSGGERKRTSIGMELITEPPVLFLDEPTTG 182
Cdd:COG4555 91 VRENIRYFAELY---GLFDEELKKRIEELIELLGLEEFLDRRVG-----ELSTGMKKKVALARALVHDPKVLLLDEPTNG 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 183 LDASTANAVLMLLKKLSRRGRTIIFSIHQPrYSIFKLFDSLTLLALGKVLYHGPAKQALEYFSsigyecepFNNPADFFL 262
Cdd:COG4555 163 LDVMARRLLREILRALKKEGKTVLFSSHIM-QEVEALCDRVVILHKGKVVAQGSLDELREEIG--------EENLEDAFV 233
|
....*.
gi 677296704 263 DIINGD 268
Cdd:COG4555 234 ALIGSE 239
|
|
| ABCG_PDR_domain1 |
cd03233 |
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette ... |
1-235 |
4.88e-41 |
|
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213200 [Multi-domain] Cd Length: 202 Bit Score: 147.79 E-value: 4.88e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 1 GSVVSFHNIQysvkqssgFLCKRKTVEKKILHNVYGIMKPG-LNAILGPTGSGKSSLLDVLA-ARKHPAGLSGEVLIDGI 78
Cdd:cd03233 1 ASTLSWRNIS--------FTTGKGRSKIPILKDFSGVVKPGeMVLVLGRPGSGCSTLLKALAnRTEGNVSVEGDIHYNGI 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 79 PQPPNFKCISG---YVVQDDVVMGTMTVRENLHFSAALRlpssisvkekedrvtqiiselglskvadakvGTEMIRGVSG 155
Cdd:cd03233 73 PYKEFAEKYPGeiiYVSEEDVHFPTLTVRETLDFALRCK-------------------------------GNEFVRGISG 121
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 156 GERKRTSIGMELITEPPVLFLDEPTTGLDASTANAVLMLLKKLSRR-GRTIIFSIHQPRYSIFKLFDSLTLLALGKVLYH 234
Cdd:cd03233 122 GERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVlKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYY 201
|
.
gi 677296704 235 G 235
Cdd:cd03233 202 G 202
|
|
| ABC2_membrane |
pfam01061 |
ABC-2 type transporter; |
348-545 |
2.90e-39 |
|
ABC-2 type transporter;
Pssm-ID: 426023 [Multi-domain] Cd Length: 204 Bit Score: 143.18 E-value: 2.90e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 348 VSKRSLKNLVRNPQASFAQVV-TIILALVVGAIFFGVKlDRSGIQNRVGSLFFVTTNQCFSSVSAIEL-FIRDKKLFVHQ 425
Cdd:pfam01061 1 LLKREFLRRWRDPSLGLWRLIqPILMALIFGTLFGNLG-NQQGGLNRPGLLFFSILFNAFSALSGISPvFEKERGVLYRE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 426 YTSGYYRVSAYFLALMIGDLlPMRTAPAIIFSCISYWMIGYQAVTGRFFFFMLTLVMVSYTATAMSLAISAGMDVVAVAN 505
Cdd:pfam01061 80 LASPLYSPSAYVLAKILSEL-PLSLLQSLIFLLIVYFMVGLPPSAGRFFLFLLVLLLTALAASSLGLFISALAPSFEDAS 158
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 677296704 506 LLITICFVLMLIFSGLLVNLPSIMGWLNWLQYFSIPRYGL 545
Cdd:pfam01061 159 QLGPLVLLPLLLLSGFFIPIDSMPVWWQWIYYLNPLTYAI 198
|
|
| FepC |
COG1120 |
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion ... |
27-241 |
4.69e-33 |
|
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion transport and metabolism, Coenzyme transport and metabolism];
Pssm-ID: 440737 [Multi-domain] Cd Length: 254 Bit Score: 127.47 E-value: 4.69e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 27 EKKILHNVYGIMKPG-LNAILGPTGSGKSSLLDVLAARKHPAglSGEVLIDGIPqppnfkcIS-----------GYVVQD 94
Cdd:COG1120 13 GRPVLDDVSLSLPPGeVTALLGPNGSGKSTLLRALAGLLKPS--SGEVLLDGRD-------LAslsrrelarriAYVPQE 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 95 DVVMGTMTVREnlhfSAAL-RLP--SSISVKEKEDR--VTQIISELGLSKVADAKVGTemirgVSGGERKRTSIGMELIT 169
Cdd:COG1120 84 PPAPFGLTVRE----LVALgRYPhlGLFGRPSAEDReaVEEALERTGLEHLADRPVDE-----LSGGERQRVLIARALAQ 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 677296704 170 EPPVLFLDEPTTGLDASTANAVLMLLKKLSR-RGRTIIFSIHQP----RYSifklfDSLTLLALGKVLYHGPAKQAL 241
Cdd:COG1120 155 EPPLLLLDEPTSHLDLAHQLEVLELLRRLAReRGRTVVMVLHDLnlaaRYA-----DRLVLLKDGRIVAQGPPEEVL 226
|
|
| ZnuC |
COG1121 |
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
27-241 |
2.26e-32 |
|
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440738 [Multi-domain] Cd Length: 245 Bit Score: 125.20 E-value: 2.26e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 27 EKKILHNVYGIMKPG-LNAILGPTGSGKSSLLDVLAarkhpaGL----SGEVLIDGIPQPPNFKCIsGYVVQDDVVMGT- 100
Cdd:COG1121 18 GRPVLEDVSLTIPPGeFVAIVGPNGAGKSTLLKAIL------GLlpptSGTVRLFGKPPRRARRRI-GYVPQRAEVDWDf 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 101 -MTVRE--NLHFSAALRLPSSISVKEKEdRVTQIISELGLSKVADAKVGTemirgVSGGERKRTSIGMELITEPPVLFLD 177
Cdd:COG1121 91 pITVRDvvLMGRYGRRGLFRRPSRADRE-AVDEALERVGLEDLADRPIGE-----LSGGQQQRVLLARALAQDPDLLLLD 164
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 677296704 178 EPTTGLDASTANAVLMLLKKLSRRGRTIIFSIHQPRySIFKLFDSLTLLAlGKVLYHGPAKQAL 241
Cdd:COG1121 165 EPFAGVDAATEEALYELLRELRREGKTILVVTHDLG-AVREYFDRVLLLN-RGLVAHGPPEEVL 226
|
|
| ABC_drug_resistance_like |
cd03264 |
ABC-type multidrug transport system, ATPase component; The biological function of this family ... |
28-235 |
7.39e-32 |
|
ABC-type multidrug transport system, ATPase component; The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213231 [Multi-domain] Cd Length: 211 Bit Score: 122.69 E-value: 7.39e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 28 KKILHNVYGIMKPGLNAILGPTGSGKSSLLDVLAARKHPAglSGEVLIDGIP---QPPNFKCISGYVVQDDVVMGTMTVR 104
Cdd:cd03264 13 KRALDGVSLTLGPGMYGLLGPNGAGKTTLMRILATLTPPS--SGTIRIDGQDvlkQPQKLRRRIGYLPQEFGVYPNFTVR 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 105 ENLHFSAALRlpsSISVKEKEDRVTQIISELGLSKVADAKVGTemirgVSGGERKRTSIGMELITEPPVLFLDEPTTGLD 184
Cdd:cd03264 91 EFLDYIAWLK---GIPSKEVKARVDEVLELVNLGDRAKKKIGS-----LSGGMRRRVGIAQALVGDPSILIVDEPTAGLD 162
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 677296704 185 ASTANAVLMLLKKLSrRGRTIIFSIHQPRySIFKLFDSLTLLALGKVLYHG 235
Cdd:cd03264 163 PEERIRFRNLLSELG-EDRIVILSTHIVE-DVESLCNQVAVLNKGKLVFEG 211
|
|
| ABC_tran |
pfam00005 |
ABC transporter; ABC transporters for a large family of proteins responsible for translocation ... |
31-181 |
9.79e-32 |
|
ABC transporter; ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide or belong in different polypeptide chains.
Pssm-ID: 394964 [Multi-domain] Cd Length: 150 Bit Score: 120.06 E-value: 9.79e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 31 LHNVYGIMKPG-LNAILGPTGSGKSSLLDVLAARKHPAglSGEVLIDGIPQPPNFKCIS----GYVVQDDVVMGTMTVRE 105
Cdd:pfam00005 1 LKNVSLTLNPGeILALVGPNGAGKSTLLKLIAGLLSPT--EGTILLDGQDLTDDERKSLrkeiGYVFQDPQLFPRLTVRE 78
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 677296704 106 NLHFSAALRLPSSisvKEKEDRVTQIISELGLSKVADAKVGtEMIRGVSGGERKRTSIGMELITEPPVLFLDEPTT 181
Cdd:pfam00005 79 NLRLGLLLKGLSK---REKDARAEEALEKLGLGDLADRPVG-ERPGTLSGGQRQRVAIARALLTKPKLLLLDEPTA 150
|
|
| CcmA |
COG4133 |
ABC-type transport system involved in cytochrome c biogenesis, ATPase component ... |
44-212 |
1.25e-31 |
|
ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443308 [Multi-domain] Cd Length: 206 Bit Score: 121.82 E-value: 1.25e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 44 AILGPTGSGKSSLLDVLAarkhpaGL----SGEVLIDGIP---QPPNFKCISGYVVQDDVVMGTMTVRENLHFSAALRlp 116
Cdd:COG4133 32 ALTGPNGSGKTTLLRILA------GLlppsAGEVLWNGEPirdAREDYRRRLAYLGHADGLKPELTVRENLRFWAALY-- 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 117 ssiSVKEKEDRVTQIISELGLSKVADAKVGTemirgVSGGERKRTSIGMELITEPPVLFLDEPTTGLDASTANAVLMLLK 196
Cdd:COG4133 104 ---GLRADREAIDEALEAVGLAGLADLPVRQ-----LSAGQKRRVALARLLLSPAPLWLLDEPFTALDAAGVALLAELIA 175
|
170
....*....|....*.
gi 677296704 197 KLSRRGRTIIFSIHQP 212
Cdd:COG4133 176 AHLARGGAVLLTTHQP 191
|
|
| EcfA2 |
COG1122 |
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and ... |
44-242 |
1.50e-31 |
|
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and metabolism, General function prediction only];
Pssm-ID: 440739 [Multi-domain] Cd Length: 230 Bit Score: 122.44 E-value: 1.50e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 44 AILGPTGSGKSSLLdvlaarKHPAGL----SGEVLIDGIP-QPPNFKCIS---GYVVQD-D--VVMgtMTVRENLHFS-A 111
Cdd:COG1122 31 AIIGPNGSGKSTLL------RLLNGLlkptSGEVLVDGKDiTKKNLRELRrkvGLVFQNpDdqLFA--PTVEEDVAFGpE 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 112 ALRLPSsisvKEKEDRVTQIISELGLSKVADAKVGTemirgVSGGERKRTSI-GMeLITEPPVLFLDEPTTGLDASTANA 190
Cdd:COG1122 103 NLGLPR----EEIRERVEEALELVGLEHLADRPPHE-----LSGGQKQRVAIaGV-LAMEPEVLVLDEPTAGLDPRGRRE 172
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 677296704 191 VLMLLKKLSRRGRTIIFSIHQPRYsIFKLFDSLTLLALGKVLYHGPAKQALE 242
Cdd:COG1122 173 LLELLKRLNKEGKTVIIVTHDLDL-VAELADRVIVLDDGRIVADGTPREVFS 223
|
|
| ABC_Metallic_Cations |
cd03235 |
ATP-binding cassette domain of the metal-type transporters; This family includes transporters ... |
28-235 |
1.52e-31 |
|
ATP-binding cassette domain of the metal-type transporters; This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Pssm-ID: 213202 [Multi-domain] Cd Length: 213 Bit Score: 121.87 E-value: 1.52e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 28 KKILHNVYGIMKPG-LNAILGPTGSGKSSLLDVLAARKHPAglSGEVLIDGIPQPPNFKCIsGYVVQDDVVMGTM--TVR 104
Cdd:cd03235 12 HPVLEDVSFEVKPGeFLAIVGPNGAGKSTLLKAILGLLKPT--SGSIRVFGKPLEKERKRI-GYVPQRRSIDRDFpiSVR 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 105 E-----NLHFSAALRLPSsisvKEKEDRVTQIISELGLSKVADAKVGTemirgVSGGERKRTSIGMELITEPPVLFLDEP 179
Cdd:cd03235 89 DvvlmgLYGHKGLFRRLS----KADKAKVDEALERVGLSELADRQIGE-----LSGGQQQRVLLARALVQDPDLLLLDEP 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 677296704 180 TTGLDASTANAVLMLLKKLSRRGRTIIFSIHQPRySIFKLFDSLTLLAlGKVLYHG 235
Cdd:cd03235 160 FAGVDPKTQEDIYELLRELRREGMTILVVTHDLG-LVLEYFDRVLLLN-RTVVASG 213
|
|
| ABC_subfamily_A |
cd03263 |
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily ... |
44-210 |
2.18e-31 |
|
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Pssm-ID: 213230 [Multi-domain] Cd Length: 220 Bit Score: 121.46 E-value: 2.18e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 44 AILGPTGSGKSSLLDVLAARKHPAglSGEVLIDGIPQPPNFKCIS---GYVVQDDVVMGTMTVRENLHFSAALRlpsSIS 120
Cdd:cd03263 32 GLLGHNGAGKTTTLKMLTGELRPT--SGTAYINGYSIRTDRKAARqslGYCPQFDALFDELTVREHLRFYARLK---GLP 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 121 VKEKEDRVTQIISELGLSKVADAKVGTemirgVSGGERKRTSIGMELITEPPVLFLDEPTTGLDASTANAVLMLLKKLsR 200
Cdd:cd03263 107 KSEIKEEVELLLRVLGLTDKANKRART-----LSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEV-R 180
|
170
....*....|
gi 677296704 201 RGRTIIFSIH 210
Cdd:cd03263 181 KGRSIILTTH 190
|
|
| ABC_cobalt_CbiO_domain1 |
cd03225 |
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ... |
21-230 |
1.53e-30 |
|
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213192 [Multi-domain] Cd Length: 211 Bit Score: 118.72 E-value: 1.53e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 21 CKRKTVEKKILHNVYGIMKPG-LNAILGPTGSGKSSLLDVLAARKHPagLSGEVLIDGIP----QPPNFKCISGYVVQD- 94
Cdd:cd03225 7 FSYPDGARPALDDISLTIKKGeFVLIVGPNGSGKSTLLRLLNGLLGP--TSGEVLVDGKDltklSLKELRRKVGLVFQNp 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 95 DVVMGTMTVRENLHFSAALRlpsSISVKEKEDRVTQIISELGLSKVADAKVGTemirgVSGGERKRTSIGMELITEPPVL 174
Cdd:cd03225 85 DDQFFGPTVEEEVAFGLENL---GLPEEEIEERVEEALELVGLEGLRDRSPFT-----LSGGQKQRVAIAGVLAMDPDIL 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 677296704 175 FLDEPTTGLDASTANAVLMLLKKLSRRGRTIIFSIHQPRYsIFKLFDSLTLLALGK 230
Cdd:cd03225 157 LLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDL-LLELADRVIVLEDGK 211
|
|
| LolD |
COG1136 |
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis]; |
44-213 |
1.65e-30 |
|
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440751 [Multi-domain] Cd Length: 227 Bit Score: 119.38 E-value: 1.65e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 44 AILGPTGSGKSSLLDVLAARKHPAglSGEVLIDGIPqppnfkcIS---------------GYVVQDDVVMGTMTVRENLH 108
Cdd:COG1136 38 AIVGPSGSGKSTLLNILGGLDRPT--SGEVLIDGQD-------ISslserelarlrrrhiGFVFQFFNLLPELTALENVA 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 109 FsaALRLpSSISVKEKEDRVTQIISELGLSKVADAKVGtEMirgvSGGERKRTSIGMELITEPPVLFLDEPTTGLDASTA 188
Cdd:COG1136 109 L--PLLL-AGVSRKERRERARELLERVGLGDRLDHRPS-QL----SGGQQQRVAIARALVNRPKLILADEPTGNLDSKTG 180
|
170 180
....*....|....*....|....*.
gi 677296704 189 NAVLMLLKKLSRR-GRTIIFSIHQPR 213
Cdd:COG1136 181 EEVLELLRELNRElGTTIVMVTHDPE 206
|
|
| ABC_MJ0796_LolCDE_FtsE |
cd03255 |
ATP-binding cassette domain of the transporters involved in export of lipoprotein and ... |
22-221 |
2.92e-30 |
|
ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and Cell division ATP-binding protein FtsE; This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Pssm-ID: 213222 [Multi-domain] Cd Length: 218 Bit Score: 118.36 E-value: 2.92e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 22 KRKTVEKKILHNVYGIMKPG-LNAILGPTGSGKSSLLDVLAARKHPAglSGEVLIDGIpqppNFKCIS------------ 88
Cdd:cd03255 11 GGGGEKVQALKGVSLSIEKGeFVAIVGPSGSGKSTLLNILGGLDRPT--SGEVRVDGT----DISKLSekelaafrrrhi 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 89 GYVVQDDVVMGTMTVRENLhfSAALRLpSSISVKEKEDRVTQIISELGLSKVADAKVGtEMirgvSGGERKRTSIGMELI 168
Cdd:cd03255 85 GFVFQSFNLLPDLTALENV--ELPLLL-AGVPKKERRERAEELLERVGLGDRLNHYPS-EL----SGGQQQRVAIARALA 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 677296704 169 TEPPVLFLDEPTTGLDASTANAVLMLLKKLSR-RGRTIIFSIHQPRysIFKLFD 221
Cdd:cd03255 157 NDPKIILADEPTGNLDSETGKEVMELLRELNKeAGTTIVVVTHDPE--LAEYAD 208
|
|
| ABC_DR_subfamily_A |
cd03230 |
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily ... |
28-231 |
6.03e-29 |
|
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A; This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213197 [Multi-domain] Cd Length: 173 Bit Score: 113.26 E-value: 6.03e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 28 KKILHNV-YGIMKPGLNAILGPTGSGKSSLLDVLAarkhpaGL----SGEVLIDGIP---QPPNFKCISGYVVQDDVVMG 99
Cdd:cd03230 13 KTALDDIsLTVEKGEIYGLLGPNGAGKTTLIKIIL------GLlkpdSGEIKVLGKDikkEPEEVKRRIGYLPEEPSLYE 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 100 TMTVRENLHFSaalrlpssisvkekedrvtqiiselglskvadakvgtemirgvsGGERKRTSIGMELITEPPVLFLDEP 179
Cdd:cd03230 87 NLTVRENLKLS--------------------------------------------GGMKQRLALAQALLHDPELLILDEP 122
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 677296704 180 TTGLDASTANAVLMLLKKLSRRGRTIIFSIHQPRySIFKLFDSLTLLALGKV 231
Cdd:cd03230 123 TSGLDPESRREFWELLRELKKEGKTILLSSHILE-EAERLCDRVAILNNGRI 173
|
|
| ABC_NrtD_SsuB_transporters |
cd03293 |
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ... |
44-210 |
1.40e-28 |
|
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213260 [Multi-domain] Cd Length: 220 Bit Score: 113.72 E-value: 1.40e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 44 AILGPTGSGKSSLLDVLAarkhpaGL----SGEVLIDGIP-QPPNFKCisGYVVQDDVVMGTMTVRENLHFSAALRlpsS 118
Cdd:cd03293 34 ALVGPSGCGKSTLLRIIA------GLerptSGEVLVDGEPvTGPGPDR--GYVFQQDALLPWLTVLDNVALGLELQ---G 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 119 ISVKEKEDRVTQIISELGLSKVADAkvgteMIRGVSGGERKRTSIGMELITEPPVLFLDEPTTGLDASTANAVLMLLKKL 198
Cdd:cd03293 103 VPKAEARERAEELLELVGLSGFENA-----YPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDI 177
|
170
....*....|...
gi 677296704 199 SRR-GRTIIFSIH 210
Cdd:cd03293 178 WREtGKTVLLVTH 190
|
|
| ABC_Carb_Solutes_like |
cd03259 |
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is ... |
39-235 |
2.08e-28 |
|
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213226 [Multi-domain] Cd Length: 213 Bit Score: 113.00 E-value: 2.08e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 39 KPG-LNAILGPTGSGKSSLLDVLAARKHPAglSGEVLIDGIP---QPPNFKCIsGYVVQDDVVMGTMTVRENLHFsaALR 114
Cdd:cd03259 24 EPGeFLALLGPSGCGKTTLLRLIAGLERPD--SGEILIDGRDvtgVPPERRNI-GMVFQDYALFPHLTVAENIAF--GLK 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 115 LpSSISVKEKEDRVTQIISELGLSKVADAKVGTemirgVSGGERKRTSIGMELITEPPVLFLDEPTTGLDASTANAVLML 194
Cdd:cd03259 99 L-RGVPKAEIRARVRELLELVGLEGLLNRYPHE-----LSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREE 172
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 677296704 195 LKKLSRR-GRTIIFSIHQPRySIFKLFDSLTLLALGKVLYHG 235
Cdd:cd03259 173 LKELQRElGITTIYVTHDQE-EALALADRIAVMNEGRIVQVG 213
|
|
| ABC_NatA_sodium_exporter |
cd03266 |
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a ... |
20-235 |
4.94e-27 |
|
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein.
Pssm-ID: 213233 [Multi-domain] Cd Length: 218 Bit Score: 109.38 E-value: 4.94e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 20 LCKRKTVEKKILHNVYGI---MKPG-LNAILGPTGSGKSSLLDVLAARKHPAglSGEVLIDGI---PQPPNFKCISGYVV 92
Cdd:cd03266 7 LTKRFRDVKKTVQAVDGVsftVKPGeVTGLLGPNGAGKTTTLRMLAGLLEPD--AGFATVDGFdvvKEPAEARRRLGFVS 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 93 QDDVVMGTMTVRENLHFSAALRlpsSISVKEKEDRVTQIISELGLSKVADAKVGtemirGVSGGERKRTSIGMELITEPP 172
Cdd:cd03266 85 DSTGLYDRLTARENLEYFAGLY---GLKGDELTARLEELADRLGMEELLDRRVG-----GFSTGMRQKVAIARALVHDPP 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 677296704 173 VLFLDEPTTGLDASTANAVLMLLKKLSRRGRTIIFSIHQpRYSIFKLFDSLTLLALGKVLYHG 235
Cdd:cd03266 157 VLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHI-MQEVERLCDRVVVLHRGRVVYEG 218
|
|
| ABC_ModC_molybdenum_transporter |
cd03297 |
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type ... |
41-235 |
6.17e-27 |
|
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213264 [Multi-domain] Cd Length: 214 Bit Score: 108.92 E-value: 6.17e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 41 GLNAILGPTGSGKSSLLDVLAARKHPAG----LSGEVLIDG---IPQPPNFKCIsGYVVQDDVVMGTMTVRENLHFsaAL 113
Cdd:cd03297 24 EVTGIFGASGAGKSTLLRCIAGLEKPDGgtivLNGTVLFDSrkkINLPPQQRKI-GLVFQQYALFPHLNVRENLAF--GL 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 114 RLPSSisvKEKEDRVTQIISELGLSKVADAKVGTemirgVSGGERKRTSIGMELITEPPVLFLDEPTTGLDASTANAVLM 193
Cdd:cd03297 101 KRKRN---REDRISVDELLDLLGLDHLLNRYPAQ-----LSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLP 172
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 677296704 194 LLKKLSRR-GRTIIFSIHQPRySIFKLFDSLTLLALGKVLYHG 235
Cdd:cd03297 173 ELKQIKKNlNIPVIFVTHDLS-EAEYLADRIVVMEDGRLQYIG 214
|
|
| ABC_Iron-Siderophores_B12_Hemin |
cd03214 |
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related ... |
27-235 |
8.24e-27 |
|
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins; ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Pssm-ID: 213181 [Multi-domain] Cd Length: 180 Bit Score: 107.14 E-value: 8.24e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 27 EKKILHNVYGIMKPG-LNAILGPTGSGKSSLLDVLAarkhpaGL----SGEVLIDGIPqppnfkcisgyvvqddvvMGTM 101
Cdd:cd03214 11 GRTVLDDLSLSIEAGeIVGILGPNGAGKSTLLKTLA------GLlkpsSGEILLDGKD------------------LASL 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 102 TVREnlhfsAALRlpssISVkekedrVTQIISELGLSKVADAKVGTemirgVSGGERKRTSIGMELITEPPVLFLDEPTT 181
Cdd:cd03214 67 SPKE-----LARK----IAY------VPQALELLGLAHLADRPFNE-----LSGGERQRVLLARALAQEPPILLLDEPTS 126
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 677296704 182 GLDASTANAVLMLLKKLSR-RGRTIIFSIHQP----RYSifklfDSLTLLALGKVLYHG 235
Cdd:cd03214 127 HLDIAHQIELLELLRRLAReRGKTVVMVLHDLnlaaRYA-----DRVILLKDGRIVAQG 180
|
|
| ABC_Mj1267_LivG_branched |
cd03219 |
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ... |
42-239 |
1.92e-26 |
|
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Pssm-ID: 213186 [Multi-domain] Cd Length: 236 Bit Score: 107.91 E-value: 1.92e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 42 LNAILGPTGSGKSSLLDVLAARKHPAglSGEVLIDG--IPQPPNFKCISGYVV---QDDVVMGTMTVRENLHFSAALRLP 116
Cdd:cd03219 28 IHGLIGPNGAGKTTLFNLISGFLRPT--SGSVLFDGedITGLPPHEIARLGIGrtfQIPRLFPELTVLENVMVAAQARTG 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 117 SSI-------SVKEKEDRVTQIISELGLSKVADAKVGTemirgVSGGERKRTSIGMELITEPPVLFLDEPTTGLDASTAN 189
Cdd:cd03219 106 SGLllararrEEREARERAEELLERVGLADLADRPAGE-----LSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETE 180
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 677296704 190 AVLMLLKKLSRRGRTIIFSIHQPRySIFKLFDSLTLLALGKVLYHGPAKQ 239
Cdd:cd03219 181 ELAELIRELRERGITVLLVEHDMD-VVMSLADRVTVLDQGRVIAEGTPDE 229
|
|
| TauB |
COG1116 |
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion ... |
44-207 |
6.76e-26 |
|
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440733 [Multi-domain] Cd Length: 260 Bit Score: 107.10 E-value: 6.76e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 44 AILGPTGSGKSSLLDVLAarkhpaGL----SGEVLIDGIP-QPPNFKCisGYVVQDDVVMGTMTVRENLHFsaALRLpSS 118
Cdd:COG1116 41 ALVGPSGCGKSTLLRLIA------GLekptSGEVLVDGKPvTGPGPDR--GVVFQEPALLPWLTVLDNVAL--GLEL-RG 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 119 ISVKEKEDRVTQIISELGLSKVADAKVGTemirgVSGGERKRTSIGMELITEPPVLFLDEPTTGLDASTAnAVLM--LLK 196
Cdd:COG1116 110 VPKAERRERARELLELVGLAGFEDAYPHQ-----LSGGMRQRVAIARALANDPEVLLMDEPFGALDALTR-ERLQdeLLR 183
|
170
....*....|.
gi 677296704 197 KLSRRGRTIIF 207
Cdd:COG1116 184 LWQETGKTVLF 194
|
|
| ABC_Org_Solvent_Resistant |
cd03261 |
ATP-binding cassette transport system involved in resistance to organic solvents; ABC ... |
27-239 |
1.09e-25 |
|
ATP-binding cassette transport system involved in resistance to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213228 [Multi-domain] Cd Length: 235 Bit Score: 105.66 E-value: 1.09e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 27 EKKILHNVYGIMKPG-LNAILGPTGSGKSSLLdvlaarKHPAGL----SGEVLIDGIPQPPN-------FKCISGYVVQD 94
Cdd:cd03261 12 GRTVLKGVDLDVRRGeILAIIGPSGSGKSTLL------RLIVGLlrpdSGEVLIDGEDISGLseaelyrLRRRMGMLFQS 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 95 DVVMGTMTVRENLHFSaaLRLPSSISVKEKEDRVTQIISELGLSKVADAKVGTemirgVSGGERKRTSIGMELITEPPVL 174
Cdd:cd03261 86 GALFDSLTVFENVAFP--LREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAE-----LSGGMKKRVALARALALDPELL 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 677296704 175 FLDEPTTGLDASTANAVLMLLKKLSRR-GRTIIFSIHQpRYSIFKLFDSLTLLALGKVLYHGPAKQ 239
Cdd:cd03261 159 LYDEPTAGLDPIASGVIDDLIRSLKKElGLTSIMVTHD-LDTAFAIADRIAVLYDGKIVAEGTPEE 223
|
|
| ABC_ModC_like |
cd03299 |
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely ... |
44-210 |
1.91e-25 |
|
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213266 [Multi-domain] Cd Length: 235 Bit Score: 105.11 E-value: 1.91e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 44 AILGPTGSGKSSLLDVLAARKHPAglSGEVLIDG---IPQPPNFKCISgYVVQDDVVMGTMTVRENLHFSAALRLpssIS 120
Cdd:cd03299 29 VILGPTGSGKSVLLETIAGFIKPD--SGKILLNGkdiTNLPPEKRDIS-YVPQNYALFPHMTVYKNIAYGLKKRK---VD 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 121 VKEKEDRVTQIISELGLSKVADAKVGTemirgVSGGERKRTSIGMELITEPPVLFLDEPTTGLDASTANAVLMLLKKLSR 200
Cdd:cd03299 103 KKEIERKVLEIAEMLGIDHLLNRKPET-----LSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRK 177
|
170
....*....|.
gi 677296704 201 R-GRTIIFSIH 210
Cdd:cd03299 178 EfGVTVLHVTH 188
|
|
| ABC_ATPase |
cd00267 |
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large ... |
27-230 |
2.18e-25 |
|
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213179 [Multi-domain] Cd Length: 157 Bit Score: 102.32 E-value: 2.18e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 27 EKKILHNV-YGIMKPGLNAILGPTGSGKSSLLDVLAARKHPAglSGEVLIDGIPqppnfkcisgyvvqddvvmgtmtvre 105
Cdd:cd00267 11 GRTALDNVsLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPT--SGEILIDGKD-------------------------- 62
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 106 nlhfsaalrlpssisvkekedrVTQIISELGLSKVAdakvgteMIRGVSGGERKRTSIGMELITEPPVLFLDEPTTGLDA 185
Cdd:cd00267 63 ----------------------IAKLPLEELRRRIG-------YVPQLSGGQRQRVALARALLLNPDLLLLDEPTSGLDP 113
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 677296704 186 STANAVLMLLKKLSRRGRTIIFSIHQPRYsIFKLFDSLTLLALGK 230
Cdd:cd00267 114 ASRERLLELLRELAEEGRTVIIVTHDPEL-AELAADRVIVLKDGK 157
|
|
| ABC_Class3 |
cd03229 |
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is ... |
44-230 |
5.00e-25 |
|
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213196 [Multi-domain] Cd Length: 178 Bit Score: 102.27 E-value: 5.00e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 44 AILGPTGSGKSSLLDVLAARKHPAglSGEVLIDGIP------QPPNFKCISGYVVQDDVVMGTMTVRENLHFsaalrlps 117
Cdd:cd03229 30 ALLGPSGSGKSTLLRCIAGLEEPD--SGSILIDGEDltdledELPPLRRRIGMVFQDFALFPHLTVLENIAL-------- 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 118 sisvkekedrvtqiiselglskvadakvgtemirGVSGGERKRTSIGMELITEPPVLFLDEPTTGLDASTANAVLMLLKK 197
Cdd:cd03229 100 ----------------------------------GLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKS 145
|
170 180 190
....*....|....*....|....*....|....
gi 677296704 198 LSRR-GRTIIFSIHQPRYsIFKLFDSLTLLALGK 230
Cdd:cd03229 146 LQAQlGITVVLVTHDLDE-AARLADRVVVLRDGK 178
|
|
| FtsE |
COG2884 |
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning]; |
45-210 |
6.62e-25 |
|
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442130 [Multi-domain] Cd Length: 223 Bit Score: 103.21 E-value: 6.62e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 45 ILGPTGSGKSSLLDVLAARKHPAglSGEVLIDGIpqppNFKCIS-----------GYVVQD-----DvvmgtMTVRENLH 108
Cdd:COG2884 33 LTGPSGAGKSTLLKLLYGEERPT--SGQVLVNGQ----DLSRLKrreipylrrriGVVFQDfrllpD-----RTVYENVA 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 109 FsaALRLpSSISVKEKEDRVTQIISELGLSKVADAKVGTemirgVSGGERKRTSIGMELITEPPVLFLDEPTTGLDASTA 188
Cdd:COG2884 102 L--PLRV-TGKSRKEIRRRVREVLDLVGLSDKAKALPHE-----LSGGEQQRVAIARALVNRPELLLADEPTGNLDPETS 173
|
170 180
....*....|....*....|..
gi 677296704 189 NAVLMLLKKLSRRGRTIIFSIH 210
Cdd:COG2884 174 WEIMELLEEINRRGTTVLIATH 195
|
|
| MlaF |
COG1127 |
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall ... |
27-242 |
8.88e-25 |
|
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440744 [Multi-domain] Cd Length: 241 Bit Score: 103.52 E-value: 8.88e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 27 EKKILHNVYGIMKPG-LNAILGPTGSGKSSLLdvlaarKHPAGL----SGEVLIDGIpqppNFKCIS-----------GY 90
Cdd:COG1127 17 DRVVLDGVSLDVPRGeILAIIGGSGSGKSVLL------KLIIGLlrpdSGEILVDGQ----DITGLSekelyelrrriGM 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 91 VVQDDVVMGTMTVRENLHFsaALRLPSSISVKEKEDRVTQIISELGLSKVADAkvgteMIRGVSGGERKRTSIGMELITE 170
Cdd:COG1127 87 LFQGGALFDSLTVFENVAF--PLREHTDLSEAEIRELVLEKLELVGLPGAADK-----MPSELSGGMRKRVALARALALD 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 677296704 171 PPVLFLDEPTTGLDASTANAVLMLLKKLSRR-GRTIIFSIHQPRySIFKLFDSLTLLALGKVLYHGPAKQALE 242
Cdd:COG1127 160 PEILLYDEPTAGLDPITSAVIDELIRELRDElGLTSVVVTHDLD-SAFAIADRVAVLADGKIIAEGTPEELLA 231
|
|
| drrA |
TIGR01188 |
daunorubicin resistance ABC transporter ATP-binding subunit; This model describes daunorubicin ... |
44-238 |
9.85e-25 |
|
daunorubicin resistance ABC transporter ATP-binding subunit; This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. [Transport and binding proteins, Other]
Pssm-ID: 130256 [Multi-domain] Cd Length: 302 Bit Score: 104.78 E-value: 9.85e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 44 AILGPTGSGKSSLLDVLAARKHPAGLSGEVL-IDGIPQPPNFKCISGYVVQDDVVMGTMTVRENLHFSAALRlpsSISVK 122
Cdd:TIGR01188 23 GFLGPNGAGKTTTIRMLTTLLRPTSGTARVAgYDVVREPRKVRRSIGIVPQYASVDEDLTGRENLEMMGRLY---GLPKD 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 123 EKEDRVTQIISELGLSKVADAKVGTemirgVSGGERKRTSIGMELITEPPVLFLDEPTTGLDASTANAVLMLLKKLSRRG 202
Cdd:TIGR01188 100 EAEERAEELLELFELGEAADRPVGT-----YSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEG 174
|
170 180 190
....*....|....*....|....*....|....*.
gi 677296704 203 RTIIFSIHQpRYSIFKLFDSLTLLALGKVLYHGPAK 238
Cdd:TIGR01188 175 VTILLTTHY-MEEADKLCDRIAIIDHGRIIAEGTPE 209
|
|
| ABC_FtsE |
cd03292 |
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where ... |
45-210 |
3.36e-24 |
|
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages
Pssm-ID: 213259 [Multi-domain] Cd Length: 214 Bit Score: 100.95 E-value: 3.36e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 45 ILGPTGSGKSSLLDVLAARKHPAglSGEVLIDGIP-------QPPNFKCISGYVVQDDVVMGTMTVRENLHFsaALRLpS 117
Cdd:cd03292 32 LVGPSGAGKSTLLKLIYKEELPT--SGTIRVNGQDvsdlrgrAIPYLRRKIGVVFQDFRLLPDRNVYENVAF--ALEV-T 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 118 SISVKEKEDRVTQIISELGLSKVADAkvgteMIRGVSGGERKRTSIGMELITEPPVLFLDEPTTGLDASTANAVLMLLKK 197
Cdd:cd03292 107 GVPPREIRKRVPAALELVGLSHKHRA-----LPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKK 181
|
170
....*....|...
gi 677296704 198 LSRRGRTIIFSIH 210
Cdd:cd03292 182 INKAGTTVVVATH 194
|
|
| ModF |
COG1119 |
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA ... |
27-241 |
3.57e-24 |
|
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA [Inorganic ion transport and metabolism];
Pssm-ID: 440736 [Multi-domain] Cd Length: 250 Bit Score: 101.70 E-value: 3.57e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 27 EKKILHNVYGIMKPGLN-AILGPTGSGKSSLLDVLAARKHPAglsgevlidgipqppnfkciSGYVVQddvVMGTMTVRE 105
Cdd:COG1119 15 GKTILDDISWTVKPGEHwAILGPNGAGKSTLLSLITGDLPPT--------------------YGNDVR---LFGERRGGE 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 106 NL--------HFSAAL--RLPSSISVK-------------------EKEDRVTQIISELGLSKVADAKVGTemirgVSGG 156
Cdd:COG1119 72 DVwelrkrigLVSPALqlRFPRDETVLdvvlsgffdsiglyreptdEQRERARELLELLGLAHLADRPFGT-----LSQG 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 157 ERKRTSIGMELITEPPVLFLDEPTTGLDASTANAVLMLLKKLSRRG-RTIIFSIHQPRYsIFKLFDSLTLLALGKVLYHG 235
Cdd:COG1119 147 EQRRVLIARALVKDPELLILDEPTAGLDLGARELLLALLDKLAAEGaPTLVLVTHHVEE-IPPGITHVLLLKDGRVVAAG 225
|
....*.
gi 677296704 236 PAKQAL 241
Cdd:COG1119 226 PKEEVL 231
|
|
| FetA |
COG4619 |
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism]; |
23-206 |
3.73e-24 |
|
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443661 [Multi-domain] Cd Length: 209 Bit Score: 100.66 E-value: 3.73e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 23 RKTVEKKILHNVYGIMKPG-LNAILGPTGSGKSSLLDVLAarkhpaGL----SGEVLIDGIPQ----PPNFKCISGYVVQ 93
Cdd:COG4619 8 FRVGGKPILSPVSLTLEAGeCVAITGPSGSGKSTLLRALA------DLdpptSGEIYLDGKPLsampPPEWRRQVAYVPQ 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 94 DdVVMGTMTVRENLHFSAALRlpssiSVKEKEDRVTQIISELGLSK-VADAKVGTemirgVSGGERKRTSIGMELITEPP 172
Cdd:COG4619 82 E-PALWGGTVRDNLPFPFQLR-----ERKFDRERALELLERLGLPPdILDKPVER-----LSGGERQRLALIRALLLQPD 150
|
170 180 190
....*....|....*....|....*....|....*
gi 677296704 173 VLFLDEPTTGLDASTANAVLMLLKKLSRR-GRTII 206
Cdd:COG4619 151 VLLLDEPTSALDPENTRRVEELLREYLAEeGRAVL 185
|
|
| CydC |
COG4987 |
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease ... |
44-213 |
5.70e-24 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444011 [Multi-domain] Cd Length: 569 Bit Score: 106.39 E-value: 5.70e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 44 AILGPTGSGKSSLLDVLAaRKHPAgLSGEVLIDGIP----QPPNFKCISGYVVQDDVVMGTmTVRENLHFsAALRLPssi 119
Cdd:COG4987 365 AIVGPSGSGKSTLLALLL-RFLDP-QSGSITLGGVDlrdlDEDDLRRRIAVVPQRPHLFDT-TLRENLRL-ARPDAT--- 437
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 120 svkekEDRVTQIISELGLSKVA-------DAKVGtEMIRGVSGGERKRTSIGMELITEPPVLFLDEPTTGLDASTANAVL 192
Cdd:COG4987 438 -----DEELWAALERVGLGDWLaalpdglDTWLG-EGGRRLSGGERRRLALARALLRDAPILLLDEPTEGLDAATEQALL 511
|
170 180
....*....|....*....|.
gi 677296704 193 MLLKKLSrRGRTIIFSIHQPR 213
Cdd:COG4987 512 ADLLEAL-AGRTVLLITHRLA 531
|
|
| ABC_ThiQ_thiamine_transporter |
cd03298 |
ATP-binding cassette domain of the thiamine transport system; Part of the ... |
44-235 |
9.92e-24 |
|
ATP-binding cassette domain of the thiamine transport system; Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213265 [Multi-domain] Cd Length: 211 Bit Score: 99.49 E-value: 9.92e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 44 AILGPTGSGKSSLLDVLAARKHPAglSGEVLIDGIP---QPPNFKCISgYVVQDDVVMGTMTVREN--LHFSAALRLPSs 118
Cdd:cd03298 28 AIVGPSGSGKSTLLNLIAGFETPQ--SGRVLINGVDvtaAPPADRPVS-MLFQENNLFAHLTVEQNvgLGLSPGLKLTA- 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 119 isvkEKEDRVTQIISELGLSKVADAKVGTemirgVSGGERKRTSIGMELITEPPVLFLDEPTTGLDASTANAVLMLLKKL 198
Cdd:cd03298 104 ----EDRQAIEVALARVGLAGLEKRLPGE-----LSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDL 174
|
170 180 190
....*....|....*....|....*....|....*...
gi 677296704 199 SR-RGRTIIFSIHQPRySIFKLFDSLTLLALGKVLYHG 235
Cdd:cd03298 175 HAeTKMTVLMVTHQPE-DAKRLAQRVVFLDNGRIAAQG 211
|
|
| ABC_BcrA_bacitracin_resist |
cd03268 |
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily ... |
27-235 |
1.28e-23 |
|
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Pssm-ID: 213235 [Multi-domain] Cd Length: 208 Bit Score: 99.21 E-value: 1.28e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 27 EKKILHNVYGIMKPG-LNAILGPTGSGKSSLLDVLAARKHPAglSGEVLIDGIPQPPNFKCIS--GYVVQDDVVMGTMTV 103
Cdd:cd03268 12 KKRVLDDISLHVKKGeIYGFLGPNGAGKTTTMKIILGLIKPD--SGEITFDGKSYQKNIEALRriGALIEAPGFYPNLTA 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 104 RENLHFSAALRLpssisVKEKedRVTQIISELGLSKVADAKVGTemirgVSGGERKRTSIGMELITEPPVLFLDEPTTGL 183
Cdd:cd03268 90 RENLRLLARLLG-----IRKK--RIDEVLDVVGLKDSAKKKVKG-----FSLGMKQRLGIALALLGNPDLLILDEPTNGL 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 677296704 184 DASTANAVLMLLKKLSRRGRTIIFSIHQPRySIFKLFDSLTLLALGKVLYHG 235
Cdd:cd03268 158 DPDGIKELRELILSLRDQGITVLISSHLLS-EIQKVADRIGIINKGKLIEEG 208
|
|
| ABC_DrrA |
cd03265 |
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein ... |
44-210 |
2.78e-23 |
|
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213232 [Multi-domain] Cd Length: 220 Bit Score: 98.60 E-value: 2.78e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 44 AILGPTGSGKSSLLDVLAARKHPAglSGEVLIDG---IPQPPNFKCISGYVVQDDVVMGTMTVRENLHFSAALR-LPSSi 119
Cdd:cd03265 30 GLLGPNGAGKTTTIKMLTTLLKPT--SGRATVAGhdvVREPREVRRRIGIVFQDLSVDDELTGWENLYIHARLYgVPGA- 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 120 svkEKEDRVTQIISELGLSKVADAKVGTemirgVSGGERKRTSIGMELITEPPVLFLDEPTTGLDASTANAVLMLLKKLS 199
Cdd:cd03265 107 ---ERRERIDELLDFVGLLEAADRLVKT-----YSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLK 178
|
170
....*....|..
gi 677296704 200 RR-GRTIIFSIH 210
Cdd:cd03265 179 EEfGMTILLTTH 190
|
|
| DppF |
COG1124 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
44-207 |
4.74e-23 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440741 [Multi-domain] Cd Length: 248 Bit Score: 98.72 E-value: 4.74e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 44 AILGPTGSGKSSLLDVLAarkhpaGL----SGEVLIDGIPQPPN----FKCISGYVVQDdvVMGT----MTVRENLhfSA 111
Cdd:COG1124 35 GLVGESGSGKSTLLRALA------GLerpwSGEVTFDGRPVTRRrrkaFRRRVQMVFQD--PYASlhprHTVDRIL--AE 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 112 ALRLpssISVKEKEDRVTQIISELGLSK-VADAKVGTemirgVSGGERKRTSIGMELITEPPVLFLDEPTTGLDASTANA 190
Cdd:COG1124 105 PLRI---HGLPDREERIAELLEQVGLPPsFLDRYPHQ-----LSGGQRQRVAIARALILEPELLLLDEPTSALDVSVQAE 176
|
170
....*....|....*...
gi 677296704 191 VLMLLKKLSR-RGRTIIF 207
Cdd:COG1124 177 ILNLLKDLREeRGLTYLF 194
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
27-242 |
1.08e-22 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 101.90 E-value: 1.08e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 27 EKKILHNVYGIMKPG-LNAILGPTGSGKSSL-LDVLAARKHPAGLSGEVLIDGIP---QPPNF--KCIsGYVVQD-DVVM 98
Cdd:COG1123 18 DVPAVDGVSLTIAPGeTVALVGESGSGKSTLaLALMGLLPHGGRISGEVLLDGRDlleLSEALrgRRI-GMVFQDpMTQL 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 99 GTMTVRENLHFsaALRLpSSISVKEKEDRVTQIISELGLSKVADAKVGTemirgVSGGERKRTSIGMELITEPPVLFLDE 178
Cdd:COG1123 97 NPVTVGDQIAE--ALEN-LGLSRAEARARVLELLEAVGLERRLDRYPHQ-----LSGGQRQRVAIAMALALDPDLLIADE 168
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 677296704 179 PTTGLDASTANAVLMLLKKLSR-RGRTIIFSIHQPRYsIFKLFDSLTLLALGKVLYHGPAKQALE 242
Cdd:COG1123 169 PTTALDVTTQAEILDLLRELQReRGTTVLLITHDLGV-VAEIADRVVVMDDGRIVEDGPPEEILA 232
|
|
| ABC_PhnC_transporter |
cd03256 |
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; ... |
28-239 |
1.11e-22 |
|
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213223 [Multi-domain] Cd Length: 241 Bit Score: 97.25 E-value: 1.11e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 28 KKILHNVYGIMKPG-LNAILGPTGSGKSSLLDVLAARKHPAglSGEVLIDGIPQP-------PNFKCISGYVVQDDVVMG 99
Cdd:cd03256 14 KKALKDVSLSINPGeFVALIGPSGAGKSTLLRCLNGLVEPT--SGSVLIDGTDINklkgkalRQLRRQIGMIFQQFNLIE 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 100 TMTVREN-----LHFSAALR-LPSSISVKEKEdRVTQIISELGLSKVADAKVGTemirgVSGGERKRTSIGMELITEPPV 173
Cdd:cd03256 92 RLSVLENvlsgrLGRRSTWRsLFGLFPKEEKQ-RALAALERVGLLDKAYQRADQ-----LSGGQQQRVAIARALMQQPKL 165
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 677296704 174 LFLDEPTTGLDASTANAVLMLLKKLSR-RGRTIIFSIHQPRYsIFKLFDSLTLLALGKVLYHGPAKQ 239
Cdd:cd03256 166 ILADEPVASLDPASSRQVMDLLKRINReEGITVIVSLHQVDL-AREYADRIVGLKDGRIVFDGPPAE 231
|
|
| modC_ABC |
TIGR02142 |
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding ... |
41-239 |
1.39e-22 |
|
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. [Transport and binding proteins, Anions]
Pssm-ID: 131197 [Multi-domain] Cd Length: 354 Bit Score: 99.42 E-value: 1.39e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 41 GLNAILGPTGSGKSSLLDVLAARKHPAG----LSGEVLID---GIPQPPNFKCIsGYVVQDDVVMGTMTVRENLHFSAAL 113
Cdd:TIGR02142 24 GVTAIFGRSGSGKTTLIRLIAGLTRPDEgeivLNGRTLFDsrkGIFLPPEKRRI-GYVFQEARLFPHLSVRGNLRYGMKR 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 114 RLPSSISVKEkeDRVTQIiseLGLSKVADAKVGTemirgVSGGERKRTSIGMELITEPPVLFLDEPTTGLDASTANAVLM 193
Cdd:TIGR02142 103 ARPSERRISF--ERVIEL---LGIGHLLGRLPGR-----LSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILP 172
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 677296704 194 LLKKLSRRGRT-IIFSIHQPRySIFKLFDSLTLLALGKVLYHGPAKQ 239
Cdd:TIGR02142 173 YLERLHAEFGIpILYVSHSLQ-EVLRLADRVVVLEDGRVAAAGPIAE 218
|
|
| LolD_lipo_ex |
TIGR02211 |
lipoprotein releasing system, ATP-binding protein; This model represents LolD, a member of the ... |
22-204 |
1.80e-22 |
|
lipoprotein releasing system, ATP-binding protein; This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 131266 [Multi-domain] Cd Length: 221 Bit Score: 96.27 E-value: 1.80e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 22 KRKTVEKKILHNV-YGIMKPGLNAILGPTGSGKSSLLDVLAARKHPAglSGEVLIDGIpqppNFKCIS------------ 88
Cdd:TIGR02211 12 QEGKLDTRVLKGVsLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPT--SGEVLFNGQ----SLSKLSsneraklrnkkl 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 89 GYVVQDDVVMGTMTVRENLHFSAalrLPSSISVKEKEDRVTQIISELGLSKVADAKVGTemirgVSGGERKRTSIGMELI 168
Cdd:TIGR02211 86 GFIYQFHHLLPDFTALENVAMPL---LIGKKSVKEAKERAYEMLEKVGLEHRINHRPSE-----LSGGERQRVAIARALV 157
|
170 180 190
....*....|....*....|....*....|....*.
gi 677296704 169 TEPPVLFLDEPTTGLDASTANAVLMLLKKLSRRGRT 204
Cdd:TIGR02211 158 NQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNT 193
|
|
| AztA |
NF040873 |
zinc ABC transporter ATP-binding protein AztA; |
31-212 |
1.81e-22 |
|
zinc ABC transporter ATP-binding protein AztA;
Pssm-ID: 468810 [Multi-domain] Cd Length: 191 Bit Score: 95.38 E-value: 1.81e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 31 LHNVYGIMKPG-LNAILGPTGSGKSSLLDVLAARKHPAglSGEVLIDGIPQPpnfkcisGYVVQDDVVMGTM--TVRENL 107
Cdd:NF040873 8 LHGVDLTIPAGsLTAVVGPNGSGKSTLLKVLAGVLRPT--SGTVRRAGGARV-------AYVPQRSEVPDSLplTVRDLV 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 108 ------HFSAALRLpssisvkEKEDR--VTQIISELGLSKVADAKVGTemirgVSGGERKRTSIGMELITEPPVLFLDEP 179
Cdd:NF040873 79 amgrwaRRGLWRRL-------TRDDRaaVDDALERVGLADLAGRQLGE-----LSGGQRQRALLAQGLAQEADLLLLDEP 146
|
170 180 190
....*....|....*....|....*....|...
gi 677296704 180 TTGLDASTANAVLMLLKKLSRRGRTIIFSIHQP 212
Cdd:NF040873 147 TTGLDAESRERIIALLAEEHARGATVVVVTHDL 179
|
|
| ABC_NikE_OppD_transporters |
cd03257 |
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter ... |
22-207 |
1.95e-22 |
|
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Pssm-ID: 213224 [Multi-domain] Cd Length: 228 Bit Score: 96.42 E-value: 1.95e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 22 KRKTVEKKILHNVYGIMKPGLN-AILGPTGSGKSSLLDVLAARKHPAglSGEVLIDGIP--------QPPNFKCIsGYVV 92
Cdd:cd03257 12 PTGGGSVKALDDVSFSIKKGETlGLVGESGSGKSTLARAILGLLKPT--SGSIIFDGKDllklsrrlRKIRRKEI-QMVF 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 93 QDdvVMG----TMTVREnlHFSAALRLPSSISVKE-KEDRVTQIISELGLskvaDAKVGTEMIRGVSGGERKRTSIGMEL 167
Cdd:cd03257 89 QD--PMSslnpRMTIGE--QIAEPLRIHGKLSKKEaRKEAVLLLLVGVGL----PEEVLNRYPHELSGGQRQRVAIARAL 160
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 677296704 168 ITEPPVLFLDEPTTGLDASTANAVLMLLKKL-SRRGRTIIF 207
Cdd:cd03257 161 ALNPKLLIADEPTSALDVSVQAQILDLLKKLqEELGLTLLF 201
|
|
| ThiQ |
COG3840 |
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism]; |
44-241 |
3.44e-22 |
|
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism];
Pssm-ID: 443051 [Multi-domain] Cd Length: 232 Bit Score: 95.59 E-value: 3.44e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 44 AILGPTGSGKSSLLDVLAARKHPAglSGEVLIDGI---PQPPNFKCISgYVVQDDVVMGTMTVREN--LHFSAALRLpss 118
Cdd:COG3840 29 AILGPSGAGKSTLLNLIAGFLPPD--SGRILWNGQdltALPPAERPVS-MLFQENNLFPHLTVAQNigLGLRPGLKL--- 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 119 iSVKEKEdRVTQIISELGLSKVADAKVGTemirgVSGGERKRTSIGMELITEPPVLFLDEPTTGLDASTANAVLMLLKKL 198
Cdd:COG3840 103 -TAEQRA-QVEQALERVGLAGLLDRLPGQ-----LSGGQRQRVALARCLVRKRPILLLDEPFSALDPALRQEMLDLVDEL 175
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 677296704 199 SR-RGRTIIFSIHQPRySIFKLFDSLTLLALGKVLYHGPAKQAL 241
Cdd:COG3840 176 CReRGLTVLMVTHDPE-DAARIADRVLLVADGRIAADGPTAALL 218
|
|
| MalK |
COG3839 |
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism]; ... |
42-210 |
5.11e-22 |
|
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism];
Pssm-ID: 443050 [Multi-domain] Cd Length: 352 Bit Score: 97.84 E-value: 5.11e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 42 LNAILGPTGSGKSSLLDVLAarkhpaGL----SGEVLIDGI------PQPPNFkcisGYVVQDDVVMGTMTVRENLHFsa 111
Cdd:COG3839 31 FLVLLGPSGCGKSTLLRMIA------GLedptSGEILIGGRdvtdlpPKDRNI----AMVFQSYALYPHMTVYENIAF-- 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 112 ALRLpSSISVKEKEDRVTQIISELGLSKVADAKVGTemirgVSGGERKRTSIGMELITEPPVLFLDEPTTGLDASTANAV 191
Cdd:COG3839 99 PLKL-RKVPKAEIDRRVREAAELLGLEDLLDRKPKQ-----LSGGQRQRVALGRALVREPKVFLLDEPLSNLDAKLRVEM 172
|
170 180
....*....|....*....|
gi 677296704 192 LMLLKKLSRR-GRTIIFSIH 210
Cdd:COG3839 173 RAEIKRLHRRlGTTTIYVTH 192
|
|
| ABCC_bacteriocin_exporters |
cd03245 |
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic ... |
27-231 |
9.30e-22 |
|
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Pssm-ID: 213212 [Multi-domain] Cd Length: 220 Bit Score: 94.19 E-value: 9.30e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 27 EKKILHNVYGIMKPGLN-AILGPTGSGKSSLLDVLAARKHPAglSGEVLIDGIPQ----PPNFKCISGYVVQDdVVMGTM 101
Cdd:cd03245 16 EIPALDNVSLTIRAGEKvAIIGRVGSGKSTLLKLLAGLYKPT--SGSVLLDGTDIrqldPADLRRNIGYVPQD-VTLFYG 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 102 TVRENLhfsaALRLPSSisvkeKEDRVTQIISELGLSK-VADAKVGTEMI-----RGVSGGERKRTSIGMELITEPPVLF 175
Cdd:cd03245 93 TLRDNI----TLGAPLA-----DDERILRAAELAGVTDfVNKHPNGLDLQigergRGLSGGQRQAVALARALLNDPPILL 163
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 677296704 176 LDEPTTGLDASTANAVLMLLKKLsRRGRTIIFSIHqpRYSIFKLFDSLTLLALGKV 231
Cdd:cd03245 164 LDEPTSAMDMNSEERLKERLRQL-LGDKTLIIITH--RPSLLDLVDRIIVMDSGRI 216
|
|
| ABC_PstB_phosphate_transporter |
cd03260 |
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of ... |
27-239 |
1.17e-21 |
|
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Pssm-ID: 213227 [Multi-domain] Cd Length: 227 Bit Score: 93.78 E-value: 1.17e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 27 EKKILHNVYGIMKPG-LNAILGPTGSGKSSLLDVLA---ARKHPAGLSGEVLIDG------IPQPPNFKCISGYVVQDDV 96
Cdd:cd03260 12 DKHALKDISLDIPKGeITALIGPSGCGKSTLLRLLNrlnDLIPGAPDEGEVLLDGkdiydlDVDVLELRRRVGMVFQKPN 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 97 VMgTMTVRENLhfSAALRLPSSISVKEKEDRVTQIISELGLS-KVADAKVGTEMirgvSGGERKRTSIGMELITEPPVLF 175
Cdd:cd03260 92 PF-PGSIYDNV--AYGLRLHGIKLKEELDERVEEALRKAALWdEVKDRLHALGL----SGGQQQRLCLARALANEPEVLL 164
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 677296704 176 LDEPTTGLDASTANAVLMLLKKLSRRgRTIIFSIHQPRySIFKLFDSLTLLALGKVLYHGPAKQ 239
Cdd:cd03260 165 LDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQ-QAARVADRTAFLLNGRLVEFGPTEQ 226
|
|
| SunT |
COG2274 |
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase ... |
27-242 |
1.18e-21 |
|
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms];
Pssm-ID: 441875 [Multi-domain] Cd Length: 711 Bit Score: 99.52 E-value: 1.18e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 27 EKKILHNVYGIMKPG-LNAILGPTGSGKSSLLDVLAarkhpaGL----SGEVLIDGIPQ----PPNFKCISGYVVQDDVV 97
Cdd:COG2274 487 SPPVLDNISLTIKPGeRVAIVGRSGSGKSTLLKLLL------GLyeptSGRILIDGIDLrqidPASLRRQIGVVLQDVFL 560
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 98 MGTmTVRENLHFSAAlrlpsSISvkekEDRVTQIISELGLSKVA-------DAKVGtEMIRGVSGGERKRTSIGMELITE 170
Cdd:COG2274 561 FSG-TIRENITLGDP-----DAT----DEEIIEAARLAGLHDFIealpmgyDTVVG-EGGSNLSGGQRQRLAIARALLRN 629
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 677296704 171 PPVLFLDEPTTGLDASTANAVLMLLKKLsRRGRTIIFSIHqpRYSIFKLFDSLTLLALGKVLYHGPAKQALE 242
Cdd:COG2274 630 PRILILDEATSALDAETEAIILENLRRL-LKGRTVIIIAH--RLSTIRLADRIIVLDKGRIVEDGTHEELLA 698
|
|
| CydD |
COG4988 |
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease ... |
27-212 |
1.51e-21 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444012 [Multi-domain] Cd Length: 563 Bit Score: 98.68 E-value: 1.51e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 27 EKKILHNVYGIMKPG-LNAILGPTGSGKSSLLDVLAARKHPAglSGEVLIDGIP-----QPPNFKCISgYVVQDDVVMGT 100
Cdd:COG4988 349 GRPALDGLSLTIPPGeRVALVGPSGAGKSTLLNLLLGFLPPY--SGSILINGVDlsdldPASWRRQIA-WVPQNPYLFAG 425
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 101 mTVRENLHFSAAlrlpsSISvkekEDRVTQIISELGLSKVA-------DAKVGtEMIRGVSGGERKRTSIGMELITEPPV 173
Cdd:COG4988 426 -TIRENLRLGRP-----DAS----DEELEAALEAAGLDEFVaalpdglDTPLG-EGGRGLSGGQAQRLALARALLRDAPL 494
|
170 180 190
....*....|....*....|....*....|....*....
gi 677296704 174 LFLDEPTTGLDASTANAVLMLLKKLSrRGRTIIFSIHQP 212
Cdd:COG4988 495 LLLDEPTAHLDAETEAEILQALRRLA-KGRTVILITHRL 532
|
|
| TauB |
COG4525 |
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]; |
30-209 |
2.16e-21 |
|
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443596 [Multi-domain] Cd Length: 262 Bit Score: 94.16 E-value: 2.16e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 30 ILHNVYGIMKPG-LNAILGPTGSGKSSLLDVLAARKHPAglSGEVLIDGIPqppnfkcISG------YVVQDDVVMGTMT 102
Cdd:COG4525 22 ALQDVSLTIESGeFVVALGASGCGKTTLLNLIAGFLAPS--SGEITLDGVP-------VTGpgadrgVVFQKDALLPWLN 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 103 VRENLHFsaALRLpSSISVKEKEDRVTQIISELGLSKVADAkvgteMIRGVSGGERKRTSIGMELITEPPVLFLDEPTTG 182
Cdd:COG4525 93 VLDNVAF--GLRL-RGVPKAERRARAEELLALVGLADFARR-----RIWQLSGGMRQRVGIARALAADPRFLLMDEPFGA 164
|
170 180
....*....|....*....|....*..
gi 677296704 183 LDASTANAVLMLLKKLSRRGRTIIFSI 209
Cdd:COG4525 165 LDALTREQMQELLLDVWQRTGKGVFLI 191
|
|
| YbbA |
COG4181 |
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase ... |
2-213 |
3.02e-21 |
|
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443338 [Multi-domain] Cd Length: 233 Bit Score: 92.88 E-value: 3.02e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 2 SVVSFHNIQYSVKQSSGFLckrktvekKILHNVYGIMKPG-LNAILGPTGSGKSSLLDVLAarkhpaGL----SGEVLID 76
Cdd:COG4181 7 PIIELRGLTKTVGTGAGEL--------TILKGISLEVEAGeSVAIVGASGSGKSTLLGLLA------GLdrptSGTVRLA 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 77 GIPqppnfkcIS---------------GYVVQDDVVMGTMTVRENLHFSAALRlpssiSVKEKEDRVTQIISELGLSKVA 141
Cdd:COG4181 73 GQD-------LFaldedararlrarhvGFVFQSFQLLPTLTALENVMLPLELA-----GRRDARARARALLERVGLGHRL 140
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 677296704 142 DAkvgteMIRGVSGGERKRTSIGMELITEPPVLFLDEPTTGLDASTANAVLMLLKKLSR-RGRTIIFSIHQPR 213
Cdd:COG4181 141 DH-----YPAQLSGGEQQRVALARAFATEPAILFADEPTGNLDAATGEQIIDLLFELNReRGTTLVLVTHDPA 208
|
|
| PotA |
COG3842 |
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport ... |
44-207 |
3.62e-21 |
|
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443052 [Multi-domain] Cd Length: 353 Bit Score: 95.16 E-value: 3.62e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 44 AILGPTGSGKSSLLDVLAarkhpaGL----SGEVLIDGIP---QPPNFKCIsGYVVQDDVVMGTMTVRENLHFSaaLRLp 116
Cdd:COG3842 35 ALLGPSGCGKTTLLRMIA------GFetpdSGRILLDGRDvtgLPPEKRNV-GMVFQDYALFPHLTVAENVAFG--LRM- 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 117 SSISVKEKEDRVTQIISELGLSKVADAKVGTemirgVSGGERKRTSIGMELITEPPVLFLDEPTTGLDASTANAVLMLLK 196
Cdd:COG3842 105 RGVPKAEIRARVAELLELVGLEGLADRYPHQ-----LSGGQQQRVALARALAPEPRVLLLDEPLSALDAKLREEMREELR 179
|
170
....*....|..
gi 677296704 197 KLSRR-GRTIIF 207
Cdd:COG3842 180 RLQRElGITFIY 191
|
|
| ABC_NatA_like |
cd03267 |
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; ... |
13-235 |
6.88e-21 |
|
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein.
Pssm-ID: 213234 [Multi-domain] Cd Length: 236 Bit Score: 92.01 E-value: 6.88e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 13 VKQSSGFLCKRKTVEKKILHNV-YGIMKPGLNAILGPTGSGKSSLLDVLAARKHPAglSGEVLIDG-IPqppnFKCISGY 90
Cdd:cd03267 19 LIGSLKSLFKRKYREVEALKGIsFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPT--SGEVRVAGlVP----WKRRKKF 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 91 VVQDDVVMGTMT-------VRENLHFSAAL-RLPSSisvkEKEDRVTQIISELGLSKVADAKVgtemiRGVSGGERKRTS 162
Cdd:cd03267 93 LRRIGVVFGQKTqlwwdlpVIDSFYLLAAIyDLPPA----RFKKRLDELSELLDLEELLDTPV-----RQLSLGQRMRAE 163
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 677296704 163 IGMELITEPPVLFLDEPTTGLDASTANAVLMLLKKLSR-RGRTIIFSIHQPRySIFKLFDSLTLLALGKVLYHG 235
Cdd:cd03267 164 IAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNReRGTTVLLTSHYMK-DIEALARRVLVIDKGRLLYDG 236
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
44-242 |
8.28e-21 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 96.13 E-value: 8.28e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 44 AILGPTGSGKSSLLdvlaarKHPAGL----SGEVLIDGIP----QPPNFKCIS---GYVVQDDVVM--GTMTVRENLhfS 110
Cdd:COG1123 295 GLVGESGSGKSTLA------RLLLGLlrptSGSILFDGKDltklSRRSLRELRrrvQMVFQDPYSSlnPRMTVGDII--A 366
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 111 AALRLPSSISVKEKEDRVTQIISELGLskvaDAKVGTEMIRGVSGGERKRTSIGMELITEPPVLFLDEPTTGLDASTANA 190
Cdd:COG1123 367 EPLRLHGLLSRAERRERVAELLERVGL----PPDLADRYPHELSGGQRQRVAIARALALEPKLLILDEPTSALDVSVQAQ 442
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 677296704 191 VLMLLKKLSRR-GRTIIFSIHQ----PRYSifklfDSLTLLALGKVLYHGPAKQALE 242
Cdd:COG1123 443 ILNLLRDLQRElGLTYLFISHDlavvRYIA-----DRVAVMYDGRIVEDGPTEEVFA 494
|
|
| ABC_MalK_N |
cd03301 |
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) ... |
45-210 |
8.50e-21 |
|
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Pssm-ID: 213268 [Multi-domain] Cd Length: 213 Bit Score: 91.16 E-value: 8.50e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 45 ILGPTGSGKSSLLDVLAARKHPAglSGEVLIDGI---PQPPNFKCIsGYVVQDDVVMGTMTVRENLHFSAALRlpsSISV 121
Cdd:cd03301 31 LLGPSGCGKTTTLRMIAGLEEPT--SGRIYIGGRdvtDLPPKDRDI-AMVFQNYALYPHMTVYDNIAFGLKLR---KVPK 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 122 KEKEDRVTQIISELGLSKVADAKVgtemiRGVSGGERKRTSIGMELITEPPVLFLDEPTTGLDASTANAVLMLLKKLSRR 201
Cdd:cd03301 105 DEIDERVREVAELLQIEHLLDRKP-----KQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQR 179
|
170
....*....|
gi 677296704 202 -GRTIIFSIH 210
Cdd:cd03301 180 lGTTTIYVTH 189
|
|
| ABCC_MRP_Like |
cd03228 |
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP ... |
27-221 |
1.37e-20 |
|
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213195 [Multi-domain] Cd Length: 171 Bit Score: 89.36 E-value: 1.37e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 27 EKKILHNVYGIMKPG-LNAILGPTGSGKSSLLDVLAarkhpaGL----SGEVLIDGIP-QPPNFKCIS---GYVVQDDVV 97
Cdd:cd03228 14 PKPVLKDVSLTIKPGeKVAIVGPSGSGKSTLLKLLL------RLydptSGEILIDGVDlRDLDLESLRkniAYVPQDPFL 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 98 MgTMTVRENLhfsaalrlpssisvkekedrvtqiiselglskvadakvgtemirgVSGGERKRTSIGMELITEPPVLFLD 177
Cdd:cd03228 88 F-SGTIRENI---------------------------------------------LSGGQRQRIAIARALLRDPPILILD 121
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 677296704 178 EPTTGLDASTANAVLMLLKKLsRRGRTIIFSIHqpRYSIFKLFD 221
Cdd:cd03228 122 EATSALDPETEALILEALRAL-AKGKTVIVIAH--RLSTIRDAD 162
|
|
| ABCC_cytochrome_bd |
cd03247 |
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome ... |
4-235 |
1.88e-20 |
|
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Pssm-ID: 213214 [Multi-domain] Cd Length: 178 Bit Score: 88.91 E-value: 1.88e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 4 VSFHNIQYSVKQSsgflckrktvEKKILHNVYGIMKPGLN-AILGPTGSGKSSLLDVLAARKHPagLSGEVLIDGIPQPP 82
Cdd:cd03247 1 LSINNVSFSYPEQ----------EQQVLKNLSLELKQGEKiALLGRSGSGKSTLLQLLTGDLKP--QQGEITLDGVPVSD 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 83 NFKCISGY--VVQDDVVMGTMTVRENLhfsaALRLpssisvkekedrvtqiiselglskvadakvgtemirgvSGGERKR 160
Cdd:cd03247 69 LEKALSSLisVLNQRPYLFDTTLRNNL----GRRF--------------------------------------SGGERQR 106
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 677296704 161 TSIGMELITEPPVLFLDEPTTGLDASTANAVLMLLKKLSrRGRTIIFSIHqpRYSIFKLFDSLTLLALGKVLYHG 235
Cdd:cd03247 107 LALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL-KDKTLIWITH--HLTGIEHMDKILFLENGKIIMQG 178
|
|
| CydC |
TIGR02868 |
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family ... |
30-212 |
2.37e-20 |
|
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Pssm-ID: 274331 [Multi-domain] Cd Length: 530 Bit Score: 94.73 E-value: 2.37e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 30 ILHNVYGIMKPGLN-AILGPTGSGKSSLLDVLAARKHPagLSGEVLIDGIP-----QPPNFKCISgYVVQDDVVMGTmTV 103
Cdd:TIGR02868 350 VLDGVSLDLPPGERvAILGPSGSGKSTLLATLAGLLDP--LQGEVTLDGVPvssldQDEVRRRVS-VCAQDAHLFDT-TV 425
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 104 RENLHFSAAlrlpssisvKEKEDRVTQIISELGLSKVADAKVG------TEMIRGVSGGERKRTSIGMELITEPPVLFLD 177
Cdd:TIGR02868 426 RENLRLARP---------DATDEELWAALERVGLADWLRALPDgldtvlGEGGARLSGGERQRLALARALLADAPILLLD 496
|
170 180 190
....*....|....*....|....*....|....*.
gi 677296704 178 EPTTGLDASTANAVL-MLLKKLSrrGRTIIFSIHQP 212
Cdd:TIGR02868 497 EPTEHLDAETADELLeDLLAALS--GRTVVLITHHL 530
|
|
| ABC_HisP_GlnQ |
cd03262 |
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ... |
27-211 |
3.54e-20 |
|
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein.
Pssm-ID: 213229 [Multi-domain] Cd Length: 213 Bit Score: 89.13 E-value: 3.54e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 27 EKKILHNVYGIMKPG-LNAILGPTGSGKSSLLDVLAARKHPAglSGEVLIDGIPQPPNFKCIS------GYVVQDDVVMG 99
Cdd:cd03262 12 DFHVLKGIDLTVKKGeVVVIIGPSGSGKSTLLRCINLLEEPD--SGTIIIDGLKLTDDKKNINelrqkvGMVFQQFNLFP 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 100 TMTVRENLHFsaALRLPSSISVKEKEDRVTQIISELGLSKVADAKVGTemirgVSGGERKRTSIGMELITEPPVLFLDEP 179
Cdd:cd03262 90 HLTVLENITL--APIKVKGMSKAEAEERALELLEKVGLADKADAYPAQ-----LSGGQQQRVAIARALAMNPKVMLFDEP 162
|
170 180 190
....*....|....*....|....*....|..
gi 677296704 180 TTGLDASTANAVLMLLKKLSRRGRTIIFSIHQ 211
Cdd:cd03262 163 TSALDPELVGEVLDVMKDLAEEGMTMVVVTHE 194
|
|
| ABC_TM1139_LivF_branched |
cd03224 |
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of ... |
44-242 |
3.70e-20 |
|
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Pssm-ID: 213191 [Multi-domain] Cd Length: 222 Bit Score: 89.42 E-value: 3.70e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 44 AILGPTGSGKSSLLDVLAarkhpaGL----SGEVLIDG--IPQPPNFKCIS---GYVVQDDVVMGTMTVRENLHFSAALR 114
Cdd:cd03224 30 ALLGRNGAGKTTLLKTIM------GLlpprSGSIRFDGrdITGLPPHERARagiGYVPEGRRIFPELTVEENLLLGAYAR 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 115 LPSSisVKEKEDRVTQIISELGlsKVADAKVGTemirgVSGGERKRTSIGMELITEPPVLFLDEPTTGLDASTANAVLML 194
Cdd:cd03224 104 RRAK--RKARLERVYELFPRLK--ERRKQLAGT-----LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEA 174
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 677296704 195 LKKLSRRGRTIIFSIHQPRySIFKLFDSLTLLALGKVLYHGPAKQALE 242
Cdd:cd03224 175 IRELRDEGVTILLVEQNAR-FALEIADRAYVLERGRVVLEGTAAELLA 221
|
|
| cbiO |
TIGR01166 |
cobalt transport protein ATP-binding subunit; This model describes the ATP binding subunit of ... |
44-210 |
7.33e-20 |
|
cobalt transport protein ATP-binding subunit; This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 130234 [Multi-domain] Cd Length: 190 Bit Score: 87.86 E-value: 7.33e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 44 AILGPTGSGKSSLLDVLAARKHPAglSGEVLIDGIPQPPNFKCIS------GYVVQD-DVVMGTMTVRENLHFSaalrlP 116
Cdd:TIGR01166 22 ALLGANGAGKSTLLLHLNGLLRPQ--SGAVLIDGEPLDYSRKGLLerrqrvGLVFQDpDDQLFAADVDQDVAFG-----P 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 117 SSISVKEKE--DRVTQIISELGLSKVADakvgtEMIRGVSGGERKRTSIGMELITEPPVLFLDEPTTGLDASTANAVLML 194
Cdd:TIGR01166 95 LNLGLSEAEveRRVREALTAVGASGLRE-----RPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAI 169
|
170
....*....|....*.
gi 677296704 195 LKKLSRRGRTIIFSIH 210
Cdd:TIGR01166 170 LRRLRAEGMTVVISTH 185
|
|
| ModC |
COG4148 |
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and ... |
40-241 |
1.56e-19 |
|
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, ATPase component ModC is part of the Pathway/BioSystem: Molybdopterin biosynthesis
Pssm-ID: 443319 [Multi-domain] Cd Length: 358 Bit Score: 90.55 E-value: 1.56e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 40 PGLNAILGPTGSGKSSLLDVLAARKHPAG----LSGEVLID---GIPQPPNFKCIsGYVVQDDVVMGTMTVRENLHFSAA 112
Cdd:COG4148 25 RGVTALFGPSGSGKTTLLRAIAGLERPDSgrirLGGEVLQDsarGIFLPPHRRRI-GYVFQEARLFPHLSVRGNLLYGRK 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 113 lRLPSSisvkEKEDRVTQIISELGLSKVADAKVGTemirgVSGGERKRTSIGMELITEPPVLFLDEPTTGLDASTANAVL 192
Cdd:COG4148 104 -RAPRA----ERRISFDEVVELLGIGHLLDRRPAT-----LSGGERQRVAIGRALLSSPRLLLMDEPLAALDLARKAEIL 173
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 677296704 193 MLLKKLSRRGRT-IIFSIHQPRySIFKLFDSLTLLALGKVLYHGPAKQAL 241
Cdd:COG4148 174 PYLERLRDELDIpILYVSHSLD-EVARLADHVVLLEQGRVVASGPLAEVL 222
|
|
| ccmA |
TIGR01189 |
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein ... |
44-213 |
1.63e-19 |
|
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]
Pssm-ID: 273491 [Multi-domain] Cd Length: 198 Bit Score: 87.03 E-value: 1.63e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 44 AILGPTGSGKSSLLDVLAARKHPagLSGEVLIDGIP---QPPNFKCISGYVVQDDVVMGTMTVRENLHFSAALRLPSSIS 120
Cdd:TIGR01189 30 QVTGPNGIGKTTLLRILAGLLRP--DSGEVRWNGTPlaeQRDEPHENILYLGHLPGLKPELSALENLHFWAAIHGGAQRT 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 121 VKEKEDRVtqiiselGLSKVADAKVGTemirgVSGGERKRTSIGMELITEPPVLFLDEPTTGLDASTANAVLMLLKKLSR 200
Cdd:TIGR01189 108 IEDALAAV-------GLTGFEDLPAAQ-----LSAGQQRRLALARLWLSRRPLWILDEPTTALDKAGVALLAGLLRAHLA 175
|
170
....*....|...
gi 677296704 201 RGRTIIFSIHQPR 213
Cdd:TIGR01189 176 RGGIVLLTTHQDL 188
|
|
| ABC_CcmA_heme_exporter |
cd03231 |
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the ... |
45-212 |
2.29e-19 |
|
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Pssm-ID: 213198 [Multi-domain] Cd Length: 201 Bit Score: 86.78 E-value: 2.29e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 45 ILGPTGSGKSSLLDVLAARKHPAglSGEVLIDGIP---QPPNFKCISGYVVQDDVVMGTMTVRENLHFSAALrlpssisv 121
Cdd:cd03231 31 VTGPNGSGKTTLLRILAGLSPPL--AGRVLLNGGPldfQRDSIARGLLYLGHAPGIKTTLSVLENLRFWHAD-------- 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 122 kEKEDRVTQIISELGLSKVADAKVGTemirgVSGGERKRTSIGMELITEPPVLFLDEPTTGLDASTANAVLMLLKKLSRR 201
Cdd:cd03231 101 -HSDEQVEEALARVGLNGFEDRPVAQ-----LSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCAR 174
|
170
....*....|.
gi 677296704 202 GRTIIFSIHQP 212
Cdd:cd03231 175 GGMVVLTTHQD 185
|
|
| cbiO |
PRK13639 |
cobalt transporter ATP-binding subunit; Provisional |
44-247 |
2.30e-19 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184199 [Multi-domain] Cd Length: 275 Bit Score: 88.60 E-value: 2.30e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 44 AILGPTGSGKSSLLDVLAARKHPAglSGEVLIDGIPQPPNFKCI------SGYVVQ--DDVVMGTmTVRENLHFSAalrL 115
Cdd:PRK13639 32 ALLGPNGAGKSTLFLHFNGILKPT--SGEVLIKGEPIKYDKKSLlevrktVGIVFQnpDDQLFAP-TVEEDVAFGP---L 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 116 PSSISVKEKEDRVTQIISELGLSKVADakvgtEMIRGVSGGERKRTSIGMELITEPPVLFLDEPTTGLDASTANAVLMLL 195
Cdd:PRK13639 106 NLGLSKEEVEKRVKEALKAVGMEGFEN-----KPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLL 180
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 677296704 196 KKLSRRGRTIIFSIHQ----PRYSifklfDSLTLLALGKVLYHGPAKqalEYFSSI 247
Cdd:PRK13639 181 YDLNKEGITIIISTHDvdlvPVYA-----DKVYVMSDGKIIKEGTPK---EVFSDI 228
|
|
| ABC_cobalt_CbiO_domain2 |
cd03226 |
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of ... |
44-231 |
2.76e-19 |
|
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213193 [Multi-domain] Cd Length: 205 Bit Score: 86.54 E-value: 2.76e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 44 AILGPTGSGKSSLLDVLAARKHPAglSGEVLIDG--IPQPPNFKCIsGYVVQD-DVVMGTMTVRENLHFSAALrlpssis 120
Cdd:cd03226 30 ALTGKNGAGKTTLAKILAGLIKES--SGSILLNGkpIKAKERRKSI-GYVMQDvDYQLFTDSVREELLLGLKE------- 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 121 VKEKEDRVTQIISELGLSKVADAKVgtemiRGVSGGERKRTSIGMELITEPPVLFLDEPTTGLDASTANAVLMLLKKLSR 200
Cdd:cd03226 100 LDAGNEQAETVLKDLDLYALKERHP-----LSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAA 174
|
170 180 190
....*....|....*....|....*....|.
gi 677296704 201 RGRTIIFSIHQPRYsIFKLFDSLTLLALGKV 231
Cdd:cd03226 175 QGKAVIVITHDYEF-LAKVCDRVLLLANGAI 204
|
|
| ABC_YhbG |
cd03218 |
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the ... |
28-239 |
3.46e-19 |
|
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Pssm-ID: 213185 [Multi-domain] Cd Length: 232 Bit Score: 86.83 E-value: 3.46e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 28 KKILHNVYGIMKPG-LNAILGPTGSGKSSLLDVLAarkhpaGL----SGEVLIDG--IPQPPNFKCIS---GYVVQDDVV 97
Cdd:cd03218 13 RKVVNGVSLSVKQGeIVGLLGPNGAGKTTTFYMIV------GLvkpdSGKILLDGqdITKLPMHKRARlgiGYLPQEASI 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 98 MGTMTVRENLhfSAALRLpSSISVKEKEDRVTQIISELGLSKVADAKVGTemirgVSGGERKRTSIGMELITEPPVLFLD 177
Cdd:cd03218 87 FRKLTVEENI--LAVLEI-RGLSKKEREEKLEELLEEFHITHLRKSKASS-----LSGGERRRVEIARALATNPKFLLLD 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 677296704 178 EPTTGLDASTANAVLMLLKKLSRRGRTIIFSIHQPRySIFKLFDSLTLLALGKVLYHGPAKQ 239
Cdd:cd03218 159 EPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVR-ETLSITDRAYIIYEGKVLAEGTPEE 219
|
|
| fecE |
PRK11231 |
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE; |
27-235 |
6.01e-19 |
|
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE;
Pssm-ID: 183044 [Multi-domain] Cd Length: 255 Bit Score: 86.99 E-value: 6.01e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 27 EKKILHNVYGIMKPG-LNAILGPTGSGKSSLLDVLAARKHPagLSGEVLIDGIPqppnfkcISGY-----------VVQD 94
Cdd:PRK11231 14 TKRILNDLSLSLPTGkITALIGPNGCGKSTLLKCFARLLTP--QSGTVFLGDKP-------ISMLssrqlarrlalLPQH 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 95 DVVMGTMTVRENLHF--SAALRLPSSISVKEKEdRVTQIISELGLSKVADAKVgTEMirgvSGGERKRTSIGMELITEPP 172
Cdd:PRK11231 85 HLTPEGITVRELVAYgrSPWLSLWGRLSAEDNA-RVNQAMEQTRINHLADRRL-TDL----SGGQRQRAFLAMVLAQDTP 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 677296704 173 VLFLDEPTTGLDASTANAVLMLLKKLSRRGRTIIFSIHQ----PRYSifklfDSLTLLALGKVLYHG 235
Cdd:PRK11231 159 VVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDlnqaSRYC-----DHLVVLANGHVMAQG 220
|
|
| ABCC_ATM1_transporter |
cd03253 |
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC ... |
27-242 |
6.31e-19 |
|
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213220 [Multi-domain] Cd Length: 236 Bit Score: 86.13 E-value: 6.31e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 27 EKKILHNVYGIMKPGLN-AILGPTGSGKSSLLDVLAARKHPAglSGEVLIDGIP-----QPPNFKCIsGYVVQDDVVMGT 100
Cdd:cd03253 13 GRPVLKDVSFTIPAGKKvAIVGPSGSGKSTILRLLFRFYDVS--SGSILIDGQDirevtLDSLRRAI-GVVPQDTVLFND 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 101 mTVRENLHFSaalRLPSSISVKEKEDRVTQIISE-LGLSKVADAKVGTemiRGV--SGGERKRTSIGMELITEPPVLFLD 177
Cdd:cd03253 90 -TIGYNIRYG---RPDATDEEVIEAAKAAQIHDKiMRFPDGYDTIVGE---RGLklSGGEKQRVAIARAILKNPPILLLD 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 677296704 178 EPTTGLDASTANAVLMLLKKLSrRGRTIIFSIHqpRYSIFKLFDSLTLLALGKVLYHGPAKQALE 242
Cdd:cd03253 163 EATSALDTHTEREIQAALRDVS-KGRTTIVIAH--RLSTIVNADKIIVLKDGRIVERGTHEELLA 224
|
|
| ABC_PotA_N |
cd03300 |
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and ... |
28-210 |
7.29e-19 |
|
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213267 [Multi-domain] Cd Length: 232 Bit Score: 86.14 E-value: 7.29e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 28 KKILHNVYGIMKPG-LNAILGPTGSGKSSLLDVLAARKHPAglSGEVLIDG---IPQPPNFKCIsGYVVQDDVVMGTMTV 103
Cdd:cd03300 13 FVALDGVSLDIKEGeFFTLLGPSGCGKTTLLRLIAGFETPT--SGEILLDGkdiTNLPPHKRPV-NTVFQNYALFPHLTV 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 104 RENLHFsaALRLpSSISVKEKEDRVTQIISELGLSKVADakvgtEMIRGVSGGERKRTSIGMELITEPPVLFLDEPTTGL 183
Cdd:cd03300 90 FENIAF--GLRL-KKLPKAEIKERVAEALDLVQLEGYAN-----RKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGAL 161
|
170 180
....*....|....*....|....*...
gi 677296704 184 DASTANAVLMLLKKLSRR-GRTIIFSIH 210
Cdd:cd03300 162 DLKLRKDMQLELKRLQKElGITFVFVTH 189
|
|
| ABC_putative_ATPase |
cd03269 |
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the ... |
44-235 |
2.35e-18 |
|
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213236 [Multi-domain] Cd Length: 210 Bit Score: 83.87 E-value: 2.35e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 44 AILGPTGSGKSSLLDVLAARKHPAglSGEVLIDGIPQPPNFKCISGYVVQDDVVMGTMTVRENLHFSAALRlpsSISVKE 123
Cdd:cd03269 30 GLLGPNGAGKTTTIRMILGIILPD--SGEVLFDGKPLDIAARNRIGYLPEERGLYPKMKVIDQLVYLAQLK---GLKKEE 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 124 KEDRVTQIISELGLSKVADAKVGTemirgVSGGERKRTSIGMELITEPPVLFLDEPTTGLDASTANAVLMLLKKLSRRGR 203
Cdd:cd03269 105 ARRRIDEWLERLELSEYANKRVEE-----LSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGK 179
|
170 180 190
....*....|....*....|....*....|..
gi 677296704 204 TIIFSIHQPRySIFKLFDSLTLLALGKVLYHG 235
Cdd:cd03269 180 TVILSTHQME-LVEELCDRVLLLNKGRAVLYG 210
|
|
| ABC_MetN_methionine_transporter |
cd03258 |
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ... |
45-239 |
2.49e-18 |
|
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213225 [Multi-domain] Cd Length: 233 Bit Score: 84.55 E-value: 2.49e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 45 ILGPTGSGKSSLLDVLAARKHPAglSGEVLIDGI-------PQPPNFKCISGYVVQDDVVMGTMTVRENLHFsaALRLpS 117
Cdd:cd03258 36 IIGRSGAGKSTLIRCINGLERPT--SGSVLVDGTdltllsgKELRKARRRIGMIFQHFNLLSSRTVFENVAL--PLEI-A 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 118 SISVKEKEDRVTQIISELGLSKVADAKVGTemirgVSGGERKRTSIGMELITEPPVLFLDEPTTGLDASTANAVLMLLKK 197
Cdd:cd03258 111 GVPKAEIEERVLELLELVGLEDKADAYPAQ-----LSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRD 185
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 677296704 198 LSRR-GRTIIFSIHQPRySIFKLFDSLTLLALGKVLYHGPAKQ 239
Cdd:cd03258 186 INRElGLTIVLITHEME-VVKRICDRVAVMEKGEVVEEGTVEE 227
|
|
| ABCC_Glucan_exporter_like |
cd03254 |
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan ... |
4-242 |
5.10e-18 |
|
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213221 [Multi-domain] Cd Length: 229 Bit Score: 83.43 E-value: 5.10e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 4 VSFHNIQYSVKQssgflckrktvEKKILHNVYGIMKPG-LNAILGPTGSGKSSLLDVLAARKHPAglSGEVLIDGIPqpp 82
Cdd:cd03254 3 IEFENVNFSYDE-----------KKPVLKDINFSIKPGeTVAIVGPTGAGKTTLINLLMRFYDPQ--KGQILIDGID--- 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 83 nFKCIS--------GYVVQDDVVMGTmTVRENLHFSAALRLPSSISVKEKEDRVTQIISEL--GLskvaDAKVGtEMIRG 152
Cdd:cd03254 67 -IRDISrkslrsmiGVVLQDTFLFSG-TIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLpnGY----DTVLG-ENGGN 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 153 VSGGERKRTSIGMELITEPPVLFLDEPTTGLDASTANAVLMLLKKLsRRGRTIIFSIHqpRYSIFKLFDSLTLLALGKVL 232
Cdd:cd03254 140 LSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKL-MKGRTSIIIAH--RLSTIKNADKILVLDDGKII 216
|
250
....*....|
gi 677296704 233 YHGPAKQALE 242
Cdd:cd03254 217 EEGTHDELLA 226
|
|
| PRK11160 |
PRK11160 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
44-235 |
5.38e-18 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236865 [Multi-domain] Cd Length: 574 Bit Score: 87.57 E-value: 5.38e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 44 AILGPTGSGKSSLLDVLAARKHPAglSGEVLIDGIPqppnfkcISGY----------VVQDDVVMGTMTVRENLhfsaAL 113
Cdd:PRK11160 370 ALLGRTGCGKSTLLQLLTRAWDPQ--QGEILLNGQP-------IADYseaalrqaisVVSQRVHLFSATLRDNL----LL 436
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 114 RLPSSIsvkekEDRVTQIISELGLSKVADAKVGTEMI-----RGVSGGERKRTSIGMELITEPPVLFLDEPTTGLDASTA 188
Cdd:PRK11160 437 AAPNAS-----DEALIEVLQQVGLEKLLEDDKGLNAWlgeggRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETE 511
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 677296704 189 NAVLMLLKKLSrRGRTIIFSIHqpRYSIFKLFDSLTLLALGKVLYHG 235
Cdd:PRK11160 512 RQILELLAEHA-QNKTVLMITH--RLTGLEQFDRICVMDNGQIIEQG 555
|
|
| COG4559 |
COG4559 |
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]; |
28-241 |
1.06e-17 |
|
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443620 [Multi-domain] Cd Length: 258 Bit Score: 83.24 E-value: 1.06e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 28 KKILHNVYGIMKPG-LNAILGPTGSGKSSLLDVLAARKHPAglSGEVLIDGIP---QPP----------------NFkci 87
Cdd:COG4559 14 RTLLDDVSLTLRPGeLTAIIGPNGAGKSTLLKLLTGELTPS--SGEVRLNGRPlaaWSPwelarrravlpqhsslAF--- 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 88 sGYVVQDDVVMGtmtvrenlhfsaalRLPSSISVKEKEDRVTQIISELGLSKVADakvgtEMIRGVSGGERKRTSIGMEL 167
Cdd:COG4559 89 -PFTVEEVVALG--------------RAPHGSSAAQDRQIVREALALVGLAHLAG-----RSYQTLSGGEQQRVQLARVL 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 168 I-------TEPPVLFLDEPTTGLDASTANAVLMLLKKLSRRGRTIIFSIHQP----RYSifklfDSLTLLALGKVLYHGP 236
Cdd:COG4559 149 AqlwepvdGGPRWLFLDEPTSALDLAHQHAVLRLARQLARRGGGVVAVLHDLnlaaQYA-----DRILLLHQGRLVAQGT 223
|
....*
gi 677296704 237 AKQAL 241
Cdd:COG4559 224 PEEVL 228
|
|
| lolD |
PRK11629 |
lipoprotein-releasing ABC transporter ATP-binding protein LolD; |
20-204 |
1.07e-17 |
|
lipoprotein-releasing ABC transporter ATP-binding protein LolD;
Pssm-ID: 183244 [Multi-domain] Cd Length: 233 Bit Score: 82.56 E-value: 1.07e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 20 LCKR---KTVEKKILHNVYGIMKPG-LNAILGPTGSGKSSLLDVLAARKHPAglSGEVLIDGipQPPNfKCIS------- 88
Cdd:PRK11629 11 LCKRyqeGSVQTDVLHNVSFSIGEGeMMAIVGSSGSGKSTLLHLLGGLDTPT--SGDVIFNG--QPMS-KLSSaakaelr 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 89 ----GYVVQDDVVMGTMTVRENLhfsAALRLPSSISVKEKEDRVTQIISELGLSKVADAKvGTEMirgvSGGERKRTSIG 164
Cdd:PRK11629 86 nqklGFIYQFHHLLPDFTALENV---AMPLLIGKKKPAEINSRALEMLAAVGLEHRANHR-PSEL----SGGERQRVAIA 157
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 677296704 165 MELITEPPVLFLDEPTTGLDASTANAVLMLLKKLSRRGRT 204
Cdd:PRK11629 158 RALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGT 197
|
|
| PRK13539 |
PRK13539 |
cytochrome c biogenesis protein CcmA; Provisional |
21-212 |
1.26e-17 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 237421 [Multi-domain] Cd Length: 207 Bit Score: 81.84 E-value: 1.26e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 21 CKRKtvEKKILHNVYGIMKPG-LNAILGPTGSGKSSLLDVLAARKHPAglSGEVLIDGIPQP-PNFKCISGYVVQDDVVM 98
Cdd:PRK13539 10 CVRG--GRVLFSGLSFTLAAGeALVLTGPNGSGKTTLLRLIAGLLPPA--AGTIKLDGGDIDdPDVAEACHYLGHRNAMK 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 99 GTMTVRENLHFSAALRlpssisvKEKEDRVTQIISELGLSKVADAKVGTemirgVSGGERKRTSIGMELITEPPVLFLDE 178
Cdd:PRK13539 86 PALTVAENLEFWAAFL-------GGEELDIAAALEAVGLAPLAHLPFGY-----LSAGQKRRVALARLLVSNRPIWILDE 153
|
170 180 190
....*....|....*....|....*....|....
gi 677296704 179 PTTGLDASTANAVLMLLKKLSRRGRTIIFSIHQP 212
Cdd:PRK13539 154 PTAALDAAAVALFAELIRAHLAQGGIVIAATHIP 187
|
|
| PRK13537 |
PRK13537 |
nodulation factor ABC transporter ATP-binding protein NodI; |
45-210 |
1.47e-17 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237420 [Multi-domain] Cd Length: 306 Bit Score: 83.70 E-value: 1.47e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 45 ILGPTGSGKSSLLDVLAARKHPAglSGEVLIDGIPQP---PNFKCISGYVVQDDVVMGTMTVRENLH-FSAALRLPSSis 120
Cdd:PRK13537 38 LLGPNGAGKTTTLRMLLGLTHPD--AGSISLCGEPVPsraRHARQRVGVVPQFDNLDPDFTVRENLLvFGRYFGLSAA-- 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 121 vkEKEDRVTQIISELGLSKVADAKVGTemirgVSGGERKRTSIGMELITEPPVLFLDEPTTGLDASTANAVLMLLKKLSR 200
Cdd:PRK13537 114 --AARALVPPLLEFAKLENKADAKVGE-----LSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLA 186
|
170
....*....|
gi 677296704 201 RGRTIIFSIH 210
Cdd:PRK13537 187 RGKTILLTTH 196
|
|
| PRK10584 |
PRK10584 |
putative ABC transporter ATP-binding protein YbbA; Provisional |
2-213 |
1.54e-17 |
|
putative ABC transporter ATP-binding protein YbbA; Provisional
Pssm-ID: 182569 [Multi-domain] Cd Length: 228 Bit Score: 82.13 E-value: 1.54e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 2 SVVSFHNIQYSVKQSSGFLckrktvekKILHNVYGIMKPGLN-AILGPTGSGKSSLLDVLAARKHpaGLSGEVLIDGIP- 79
Cdd:PRK10584 5 NIVEVHHLKKSVGQGEHEL--------SILTGVELVVKRGETiALIGESGSGKSTLLAILAGLDD--GSSGEVSLVGQPl 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 80 ------QPPNFKCIS-GYVVQDDVVMGTMTVRENLHFSAALRLPSSisvKEKEDRVTQIISELGLSKVADakvgtEMIRG 152
Cdd:PRK10584 75 hqmdeeARAKLRAKHvGFVFQSFMLIPTLNALENVELPALLRGESS---RQSRNGAKALLEQLGLGKRLD-----HLPAQ 146
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 677296704 153 VSGGERKRTSIGMELITEPPVLFLDEPTTGLDASTANAVLMLLKKLSRR-GRTIIFSIHQPR 213
Cdd:PRK10584 147 LSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREhGTTLILVTHDLQ 208
|
|
| YhaQ |
COG4152 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
44-239 |
2.27e-17 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443322 [Multi-domain] Cd Length: 298 Bit Score: 82.85 E-value: 2.27e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 44 AILGPTGSGKSSL----LDVLAARkhpaglSGEVLIDGIP-QPPNFKCIsGYvvqddvvM----G---TMTVRENLHFSA 111
Cdd:COG4152 31 GLLGPNGAGKTTTiriiLGILAPD------SGEVLWDGEPlDPEDRRRI-GY-------LpeerGlypKMKVGEQLVYLA 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 112 ALRlpsSISVKEKEDRVTQIISELGLSKVADAKVGTemirgVSGGERKRTSIGMELITEPPVLFLDEPTTGLDASTANAV 191
Cdd:COG4152 97 RLK---GLSKAEAKRRADEWLERLGLGDRANKKVEE-----LSKGNQQKVQLIAALLHDPELLILDEPFSGLDPVNVELL 168
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 677296704 192 LMLLKKLSRRGRTIIFSIHQPRySIFKLFDSLTLLALGKVLYHGPAKQ 239
Cdd:COG4152 169 KDVIRELAAKGTTVIFSSHQME-LVEELCDRIVIINKGRKVLSGSVDE 215
|
|
| CysA |
COG1118 |
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and ... |
44-210 |
2.39e-17 |
|
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440735 [Multi-domain] Cd Length: 348 Bit Score: 83.66 E-value: 2.39e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 44 AILGPTGSGKSSLLDVLaarkhpAGL----SGEVLIDG----IPQPPNFKCIsGYVVQDDVVMGTMTVRENLHFSAALRL 115
Cdd:COG1118 32 ALLGPSGSGKTTLLRII------AGLetpdSGRIVLNGrdlfTNLPPRERRV-GFVFQHYALFPHMTVAENIAFGLRVRP 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 116 PSSisvKEKEDRVTQIISELGLSKVADAKVGTemirgVSGGERKRTSIGMELITEPPVLFLDEPTTGLDASTANAVLMLL 195
Cdd:COG1118 105 PSK---AEIRARVEELLELVQLEGLADRYPSQ-----LSGGQRQRVALARALAVEPEVLLLDEPFGALDAKVRKELRRWL 176
|
170
....*....|....*.
gi 677296704 196 KKL-SRRGRTIIFSIH 210
Cdd:COG1118 177 RRLhDELGGTTVFVTH 192
|
|
| PRK10253 |
PRK10253 |
iron-enterobactin ABC transporter ATP-binding protein; |
44-239 |
3.73e-17 |
|
iron-enterobactin ABC transporter ATP-binding protein;
Pssm-ID: 182336 [Multi-domain] Cd Length: 265 Bit Score: 81.96 E-value: 3.73e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 44 AILGPTGSGKSSLLDVLAARKHPAglSGEVLIDG--IPQPPNFKCIS--GYVVQDDVVMGTMTVREnlhFSAALRLPSSI 119
Cdd:PRK10253 37 AIIGPNGCGKSTLLRTLSRLMTPA--HGHVWLDGehIQHYASKEVARriGLLAQNATTPGDITVQE---LVARGRYPHQP 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 120 SV----KEKEDRVTQIISELGLSKVADAKVGTemirgVSGGERKRTSIGMELITEPPVLFLDEPTTGLDASTANAVLMLL 195
Cdd:PRK10253 112 LFtrwrKEDEEAVTKAMQATGITHLADQSVDT-----LSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELL 186
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 677296704 196 KKLSR-RGRTIIFSIHQ----PRYSIfklfdSLTLLALGKVLYHGPAKQ 239
Cdd:PRK10253 187 SELNReKGYTLAAVLHDlnqaCRYAS-----HLIALREGKIVAQGAPKE 230
|
|
| LPS_export_lptB |
TIGR04406 |
LPS export ABC transporter ATP-binding protein; Members of this fmaily are LptB, the ... |
45-242 |
5.78e-17 |
|
LPS export ABC transporter ATP-binding protein; Members of this fmaily are LptB, the ATP-binding cassette protein of an ABC transporter involved in lipopolysaccharide export. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]
Pssm-ID: 275199 [Multi-domain] Cd Length: 239 Bit Score: 80.78 E-value: 5.78e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 45 ILGPTGSGKSSLLDVLAarkhpaGL----SGEVLIDGIPqppnfkcIS------------GYVVQDDVVMGTMTVRENLh 108
Cdd:TIGR04406 32 LLGPNGAGKTTSFYMIV------GLvrpdAGKILIDGQD-------IThlpmherarlgiGYLPQEASIFRKLTVEENI- 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 109 fSAALRLPSSISVKEKEDRVTQIISELGLSKVADAKVGTemirgVSGGERKRTSIGMELITEPPVLFLDEPTTGLDASTA 188
Cdd:TIGR04406 98 -MAVLEIRKDLDRAEREERLEALLEEFQISHLRDNKAMS-----LSGGERRRVEIARALATNPKFILLDEPFAGVDPIAV 171
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 677296704 189 NAVLMLLKKLSRRGRTIIFSIHQPRySIFKLFDSLTLLALGKVLYHGPAKQALE 242
Cdd:TIGR04406 172 GDIKKIIKHLKERGIGVLITDHNVR-ETLDICDRAYIISDGKVLAEGTPAEIVA 224
|
|
| PRK11000 |
PRK11000 |
maltose/maltodextrin ABC transporter ATP-binding protein MalK; |
47-237 |
7.01e-17 |
|
maltose/maltodextrin ABC transporter ATP-binding protein MalK;
Pssm-ID: 182893 [Multi-domain] Cd Length: 369 Bit Score: 82.77 E-value: 7.01e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 47 GPTGSGKSSLLDVLAarkhpaGL----SGEVLIDGIPQ---PPNFKCIsGYVVQDDVVMGTMTVRENLHFsaALRLpSSI 119
Cdd:PRK11000 36 GPSGCGKSTLLRMIA------GLeditSGDLFIGEKRMndvPPAERGV-GMVFQSYALYPHLSVAENMSF--GLKL-AGA 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 120 SVKEKEDRVTQIISELGLSKVADAKVgtemiRGVSGGERKRTSIGMELITEPPVLFLDEPTTGLDAstANAVLMLLK--K 197
Cdd:PRK11000 106 KKEEINQRVNQVAEVLQLAHLLDRKP-----KALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDA--ALRVQMRIEisR 178
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 677296704 198 LSRR-GRTIIFSIHQpRYSIFKLFDSLTLLALGKV--------LYHGPA 237
Cdd:PRK11000 179 LHKRlGRTMIYVTHD-QVEAMTLADKIVVLDAGRVaqvgkpleLYHYPA 226
|
|
| CydD |
TIGR02857 |
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family ... |
44-212 |
7.60e-17 |
|
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Pssm-ID: 274323 [Multi-domain] Cd Length: 529 Bit Score: 83.88 E-value: 7.60e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 44 AILGPTGSGKSSLLDVLAARKHPAGlsGEVLIDGIPQPPnFKCIS-----GYVVQDDVVMGTmTVRENLHFsaALRLPSS 118
Cdd:TIGR02857 352 ALVGPSGAGKSTLLNLLLGFVDPTE--GSIAVNGVPLAD-ADADSwrdqiAWVPQHPFLFAG-TIAENIRL--ARPDASD 425
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 119 ISVKEKEDRV--TQIISELGLSkvADAKVGtEMIRGVSGGERKRTSIGMELITEPPVLFLDEPTTGLDASTANAVLMLLK 196
Cdd:TIGR02857 426 AEIREALERAglDEFVAALPQG--LDTPIG-EGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALR 502
|
170
....*....|....*.
gi 677296704 197 KLSrRGRTIIFSIHQP 212
Cdd:TIGR02857 503 ALA-QGRTVLLVTHRL 517
|
|
| PRK10575 |
PRK10575 |
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC; |
44-239 |
1.13e-16 |
|
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC;
Pssm-ID: 182561 [Multi-domain] Cd Length: 265 Bit Score: 80.22 E-value: 1.13e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 44 AILGPTGSGKSSLLDVLAaRKHPAGlSGEVLIDGIP----QPPNFKCISGYVVQDDVVMGTMTVREnlhFSAALRLP--- 116
Cdd:PRK10575 41 GLIGHNGSGKSTLLKMLG-RHQPPS-EGEILLDAQPleswSSKAFARKVAYLPQQLPAAEGMTVRE---LVAIGRYPwhg 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 117 --SSISVKEKEdRVTQIISELGLSKVADakvgtEMIRGVSGGERKRTSIGMELITEPPVLFLDEPTTGLDASTANAVLML 194
Cdd:PRK10575 116 alGRFGAADRE-KVEEAISLVGLKPLAH-----RLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLAL 189
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 677296704 195 LKKLSR-RGRTIIFSIHQ----PRYSifklfDSLTLLALGKVLYHGPAKQ 239
Cdd:PRK10575 190 VHRLSQeRGLTVIAVLHDinmaARYC-----DYLVALRGGEMIAQGTPAE 234
|
|
| PhnK |
COG1101 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
27-203 |
1.23e-16 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 440718 [Multi-domain] Cd Length: 264 Bit Score: 80.13 E-value: 1.23e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 27 EKKILHNVYGIMKPG-LNAILGPTGSGKSSLLDVLAARKHPAglSGEVLIDG--IPQPPNFKCIS--GYVVQDdVVMGT- 100
Cdd:COG1101 18 EKRALDGLNLTIEEGdFVTVIGSNGAGKSTLLNAIAGSLPPD--SGSILIDGkdVTKLPEYKRAKyiGRVFQD-PMMGTa 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 101 --MTVRENLHFsAALR-----LPSSISVKEKE---DRVTQIisELGLSKVADAKVGTemirgVSGGERKRTSIGMELITE 170
Cdd:COG1101 95 psMTIEENLAL-AYRRgkrrgLRRGLTKKRRElfrELLATL--GLGLENRLDTKVGL-----LSGGQRQALSLLMATLTK 166
|
170 180 190
....*....|....*....|....*....|...
gi 677296704 171 PPVLFLDEPTTGLDASTANAVLMLLKKLSRRGR 203
Cdd:COG1101 167 PKLLLLDEHTAALDPKTAALVLELTEKIVEENN 199
|
|
| cbiO |
PRK13652 |
cobalt transporter ATP-binding subunit; Provisional |
20-211 |
1.42e-16 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 172200 [Multi-domain] Cd Length: 277 Bit Score: 80.23 E-value: 1.42e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 20 LCKRKTVEKKILHNVYGIM-KPGLNAILGPTGSGKSSLLdvlaarKHPAGL----SGEVLIDGIP-QPPNFKCIS---GY 90
Cdd:PRK13652 9 LCYSYSGSKEALNNINFIApRNSRIAVIGPNGAGKSTLF------RHFNGIlkptSGSVLIRGEPiTKENIREVRkfvGL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 91 VVQ--DDVVMGTmTVRENLHFSaalrlPSSISVKEK--EDRVTQIISELGLSKVADakvgtEMIRGVSGGERKRTSIGME 166
Cdd:PRK13652 83 VFQnpDDQIFSP-TVEQDIAFG-----PINLGLDEEtvAHRVSSALHMLGLEELRD-----RVPHHLSGGEKKRVAIAGV 151
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 677296704 167 LITEPPVLFLDEPTTGLDASTANAVLMLLKKLSRR-GRTIIFSIHQ 211
Cdd:PRK13652 152 IAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETyGMTVIFSTHQ 197
|
|
| ABCC_Hemolysin |
cd03252 |
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a ... |
30-241 |
1.54e-16 |
|
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Pssm-ID: 213219 [Multi-domain] Cd Length: 237 Bit Score: 79.45 E-value: 1.54e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 30 ILHNVYGIMKPG-LNAILGPTGSGKSSLLDvLAARKHPAGlSGEVLIDG----IPQPPNFKCISGYVVQDDVVMgTMTVR 104
Cdd:cd03252 17 ILDNISLRIKPGeVVGIVGRSGSGKSTLTK-LIQRFYVPE-NGRVLVDGhdlaLADPAWLRRQVGVVLQENVLF-NRSIR 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 105 ENLHFS-AALRLPSSISVKEKEDrVTQIISELGLSkvADAKVGtEMIRGVSGGERKRTSIGMELITEPPVLFLDEPTTGL 183
Cdd:cd03252 94 DNIALAdPGMSMERVIEAAKLAG-AHDFISELPEG--YDTIVG-EQGAGLSGGQRQRIAIARALIHNPRILIFDEATSAL 169
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 677296704 184 DASTANAVLMLLKKLSrRGRTIIFSIHqpRYSIFKLFDSLTLLALGKVLYHGPAKQAL 241
Cdd:cd03252 170 DYESEHAIMRNMHDIC-AGRTVIIIAH--RLSTVKNADRIIVMEKGRIVEQGSHDELL 224
|
|
| urea_trans_UrtD |
TIGR03411 |
urea ABC transporter, ATP-binding protein UrtD; Members of this protein family are ABC ... |
38-235 |
2.33e-16 |
|
urea ABC transporter, ATP-binding protein UrtD; Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 274568 [Multi-domain] Cd Length: 242 Bit Score: 78.75 E-value: 2.33e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 38 MKPG-LNAILGPTGSGKSSLLDVLAARKHPAglSGEVLIDGipqppnfKCISGYVVQDDVVMG------------TMTVR 104
Cdd:TIGR03411 25 VDPGeLRVIIGPNGAGKTTMMDVITGKTRPD--EGSVLFGG-------TDLTGLPEHQIARAGigrkfqkptvfeNLTVF 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 105 ENLHFS--------AALRLPSSisvKEKEDRVTQIISELGLSKVADAKVGTemirgVSGGERKRTSIGMELITEPPVLFL 176
Cdd:TIGR03411 96 ENLELAlprdksvfASLFFRLS---AEEKDRIEEVLETIGLADEADRLAGL-----LSHGQKQWLEIGMLLMQDPKLLLL 167
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 177 DEPTTGL-DASTANaVLMLLKKLSRRgRTIIFSIHQPRYsIFKLFDSLTLLALGKVLYHG 235
Cdd:TIGR03411 168 DEPVAGMtDEETEK-TAELLKSLAGK-HSVVVVEHDMEF-VRSIADKVTVLHQGSVLAEG 224
|
|
| modC |
PRK11144 |
molybdenum ABC transporter ATP-binding protein ModC; |
41-236 |
3.01e-16 |
|
molybdenum ABC transporter ATP-binding protein ModC;
Pssm-ID: 182993 [Multi-domain] Cd Length: 352 Bit Score: 80.69 E-value: 3.01e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 41 GLNAILGPTGSGKSSLLDVLAARKHP-AG---LSGEVLID---GIPQPPNFKCIsGYVVQDDVVMGTMTVRENLHFSAAl 113
Cdd:PRK11144 25 GITAIFGRSGAGKTSLINAISGLTRPqKGrivLNGRVLFDaekGICLPPEKRRI-GYVFQDARLFPHYKVRGNLRYGMA- 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 114 rlpssisvKEKEDRVTQIISELGLSKVADAKVGTemirgVSGGERKRTSIGMELITEPPVLFLDEPTTGLDASTANAVLM 193
Cdd:PRK11144 103 --------KSMVAQFDKIVALLGIEPLLDRYPGS-----LSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLP 169
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 677296704 194 LLKKLSRRGRT-IIFSIHqpryS---IFKLFDSLTLLALGKVLYHGP 236
Cdd:PRK11144 170 YLERLAREINIpILYVSH----SldeILRLADRVVVLEQGKVKAFGP 212
|
|
| cbiO |
PRK13636 |
cobalt transporter ATP-binding subunit; Provisional |
37-239 |
3.29e-16 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184196 [Multi-domain] Cd Length: 283 Bit Score: 79.51 E-value: 3.29e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 37 IMKPGLNAILGPTGSGKSSLLDVLAARKHPAglSGEVLIDGIPQPPNFKCIS------GYVVQD-DVVMGTMTVRENLHF 109
Cdd:PRK13636 29 IKKGEVTAILGGNGAGKSTLFQNLNGILKPS--SGRILFDGKPIDYSRKGLMklresvGMVFQDpDNQLFSASVYQDVSF 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 110 SAA-LRLPSsisvKEKEDRVTQIISELGLSKVADAKVgtemiRGVSGGERKRTSIGMELITEPPVLFLDEPTTGLDASTA 188
Cdd:PRK13636 107 GAVnLKLPE----DEVRKRVDNALKRTGIEHLKDKPT-----HCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGV 177
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 677296704 189 NAVLMLLKKLSRR-GRTIIFSIHQprYSIFKLF-DSLTLLALGKVLYHGPAKQ 239
Cdd:PRK13636 178 SEIMKLLVEMQKElGLTIIIATHD--IDIVPLYcDNVFVMKEGRVILQGNPKE 228
|
|
| ABC_CysA_sulfate_importer |
cd03296 |
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex ... |
31-210 |
4.48e-16 |
|
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213263 [Multi-domain] Cd Length: 239 Bit Score: 78.15 E-value: 4.48e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 31 LHNVYGIMKPG-LNAILGPTGSGKSSLLDVLAARKHPAglSGEVLIDG---IPQPPNFKCIsGYVVQDDVVMGTMTVREN 106
Cdd:cd03296 18 LDDVSLDIPSGeLVALLGPSGSGKTTLLRLIAGLERPD--SGTILFGGedaTDVPVQERNV-GFVFQHYALFRHMTVFDN 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 107 LHFSAALRLPSSISVK-EKEDRVTQIISELGLSKVADaKVGTEMirgvSGGERKRTSIGMELITEPPVLFLDEPTTGLDA 185
Cdd:cd03296 95 VAFGLRVKPRSERPPEaEIRAKVHELLKLVQLDWLAD-RYPAQL----SGGQRQRVALARALAVEPKVLLLDEPFGALDA 169
|
170 180
....*....|....*....|....*.
gi 677296704 186 STANAVLMLLKKLSRR-GRTIIFSIH 210
Cdd:cd03296 170 KVRKELRRWLRRLHDElHVTTVFVTH 195
|
|
| ArtP |
COG4161 |
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]; |
45-211 |
4.48e-16 |
|
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443326 [Multi-domain] Cd Length: 242 Bit Score: 78.13 E-value: 4.48e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 45 ILGPTGSGKSSLLDVLAARKHPAglSGEVLIDG----IPQPPNFKCIS------GYVVQDDVVMGTMTVRENLhFSAALR 114
Cdd:COG4161 33 LLGPSGAGKSSLLRVLNLLETPD--SGQLNIAGhqfdFSQKPSEKAIRllrqkvGMVFQQYNLWPHLTVMENL-IEAPCK 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 115 LpSSISVKEKEDRVTQIISELGLSKVADAkvgteMIRGVSGGERKRTSIGMELITEPPVLFLDEPTTGLDASTANAVLML 194
Cdd:COG4161 110 V-LGLSKEQAREKAMKLLARLRLTDKADR-----FPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQVVEI 183
|
170
....*....|....*..
gi 677296704 195 LKKLSRRGRTIIFSIHQ 211
Cdd:COG4161 184 IRELSQTGITQVIVTHE 200
|
|
| btuD |
PRK09536 |
corrinoid ABC transporter ATPase; Reviewed |
44-241 |
5.34e-16 |
|
corrinoid ABC transporter ATPase; Reviewed
Pssm-ID: 236554 [Multi-domain] Cd Length: 402 Bit Score: 80.27 E-value: 5.34e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 44 AILGPTGSGKSSLLDVLAARKHPAglSGEVLIDGIP-QPPNFKCISGYVV---QDDVVMGTMTVRENLHFSaalRLP--S 117
Cdd:PRK09536 33 GLVGPNGAGKTTLLRAINGTLTPT--AGTVLVAGDDvEALSARAASRRVAsvpQDTSLSFEFDVRQVVEMG---RTPhrS 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 118 SISVKEKEDR--VTQIISELGLSKVADAKVGTemirgVSGGERKRTSIGMELITEPPVLFLDEPTTGLDASTANAVLMLL 195
Cdd:PRK09536 108 RFDTWTETDRaaVERAMERTGVAQFADRPVTS-----LSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELV 182
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 677296704 196 KKLSRRGRTIIFSIHQ----PRYSifklfDSLTLLALGKVLYHGPAKQAL 241
Cdd:PRK09536 183 RRLVDDGKTAVAAIHDldlaARYC-----DELVLLADGRVRAAGPPADVL 227
|
|
| PRK13536 |
PRK13536 |
nodulation factor ABC transporter ATP-binding protein NodI; |
45-210 |
6.61e-16 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237419 [Multi-domain] Cd Length: 340 Bit Score: 79.49 E-value: 6.61e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 45 ILGPTGSGKSSLLDVLAARKHPAglSGEVLIDGIPQPPNFKCIS---GYVVQDDVVMGTMTVRENLH-FSAALRLpssiS 120
Cdd:PRK13536 72 LLGPNGAGKSTIARMILGMTSPD--AGKITVLGVPVPARARLARariGVVPQFDNLDLEFTVRENLLvFGRYFGM----S 145
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 121 VKEKEDRVTQIISELGLSKVADAKVGTemirgVSGGERKRTSIGMELITEPPVLFLDEPTTGLDASTANAVLMLLKKLSR 200
Cdd:PRK13536 146 TREIEAVIPSLLEFARLESKADARVSD-----LSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLA 220
|
170
....*....|
gi 677296704 201 RGRTIIFSIH 210
Cdd:PRK13536 221 RGKTILLTTH 230
|
|
| ABCC_Protease_Secretion |
cd03246 |
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of ... |
27-231 |
1.18e-15 |
|
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA.
Pssm-ID: 213213 [Multi-domain] Cd Length: 173 Bit Score: 74.95 E-value: 1.18e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 27 EKKILHNVYGIMKPG-LNAILGPTGSGKSSLLDVLAARKHPAglSGEVLIDGIP----QPPNFKCISGYVVQDDVVMGTm 101
Cdd:cd03246 14 EPPVLRNVSFSIEPGeSLAIIGPSGSGKSTLARLILGLLRPT--SGRVRLDGADisqwDPNELGDHVGYLPQDDELFSG- 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 102 TVRENLhfsaalrlpssisvkekedrvtqiiselglskvadakvgtemirgVSGGERKRTSIGMELITEPPVLFLDEPTT 181
Cdd:cd03246 91 SIAENI---------------------------------------------LSGGQRQRLGLARALYGNPRILVLDEPNS 125
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 677296704 182 GLDASTANAVLMLLKKLSRRGRTIIFSIHQPrySIFKLFDSLTLLALGKV 231
Cdd:cd03246 126 HLDVEGERALNQAIAALKAAGATRIVIAHRP--ETLASADRILVLEDGRV 173
|
|
| ABC_OpuCA_Osmoprotection |
cd03295 |
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding ... |
44-231 |
1.64e-15 |
|
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213262 [Multi-domain] Cd Length: 242 Bit Score: 76.57 E-value: 1.64e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 44 AILGPTGSGKSSLLDVLAARKHPAglSGEVLIDGIP---QPP-NFKCISGYVVQDDVVMGTMTVRENLhfsaALrLPSSI 119
Cdd:cd03295 31 VLIGPSGSGKTTTMKMINRLIEPT--SGEIFIDGEDireQDPvELRRKIGYVIQQIGLFPHMTVEENI----AL-VPKLL 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 120 SVKEK--EDRVTQIISELGLSkvaDAKVGTEMIRGVSGGERKRTSIGMELITEPPVLFLDEPTTGLDASTANAVLMLLKK 197
Cdd:cd03295 104 KWPKEkiRERADELLALVGLD---PAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKR 180
|
170 180 190
....*....|....*....|....*....|....*
gi 677296704 198 LSRR-GRTIIFSIHQPRYSiFKLFDSLTLLALGKV 231
Cdd:cd03295 181 LQQElGKTIVFVTHDIDEA-FRLADRIAIMKNGEI 214
|
|
| PRK13538 |
PRK13538 |
cytochrome c biogenesis heme-transporting ATPase CcmA; |
45-212 |
1.83e-15 |
|
cytochrome c biogenesis heme-transporting ATPase CcmA;
Pssm-ID: 184125 [Multi-domain] Cd Length: 204 Bit Score: 75.23 E-value: 1.83e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 45 ILGPTGSGKSSLLDVLAARKHPAglSGEVLIDGIP---QPPNFKCISGYV-----VQDDvvmgtMTVRENLHFSAALRLP 116
Cdd:PRK13538 32 IEGPNGAGKTSLLRILAGLARPD--AGEVLWQGEPirrQRDEYHQDLLYLghqpgIKTE-----LTALENLRFYQRLHGP 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 117 SSisvkekEDRVTQIISELGLSKVADAKVGTemirgVSGGERKRTSIGMELITEPPVLFLDEPTTGLDastANAVLMLLK 196
Cdd:PRK13538 105 GD------DEALWEALAQVGLAGFEDVPVRQ-----LSAGQQRRVALARLWLTRAPLWILDEPFTAID---KQGVARLEA 170
|
170
....*....|....*....
gi 677296704 197 KLSR---RGRTIIFSIHQP 212
Cdd:PRK13538 171 LLAQhaeQGGMVILTTHQD 189
|
|
| LptB |
COG1137 |
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope ... |
41-239 |
2.22e-15 |
|
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440752 [Multi-domain] Cd Length: 240 Bit Score: 75.84 E-value: 2.22e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 41 GLnaiLGPTGSGKSSLLDVLAarkhpaGL----SGEVLIDGipqppnfKCIS------------GYVVQDDVVMGTMTVR 104
Cdd:COG1137 33 GL---LGPNGAGKTTTFYMIV------GLvkpdSGRIFLDG-------EDIThlpmhkrarlgiGYLPQEASIFRKLTVE 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 105 ENLhfSAALRLpSSISVKEKEDRVTQIISELGLSKVADAKVGTemirgVSGGERKRTSIGMELITEPPVLFLDEPTTGLD 184
Cdd:COG1137 97 DNI--LAVLEL-RKLSKKEREERLEELLEEFGITHLRKSKAYS-----LSGGERRRVEIARALATNPKFILLDEPFAGVD 168
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 677296704 185 ASTANAVLMLLKKLSRRGRTIIFSIHQPRySIFKLFDSLTLLALGKVLYHGPAKQ 239
Cdd:COG1137 169 PIAVADIQKIIRHLKERGIGVLITDHNVR-ETLGICDRAYIISEGKVLAEGTPEE 222
|
|
| ABCC_TAP |
cd03248 |
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; ... |
3-231 |
4.12e-15 |
|
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Pssm-ID: 213215 [Multi-domain] Cd Length: 226 Bit Score: 74.81 E-value: 4.12e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 3 VVSFHNIQYSVKQSSgflckrktvEKKILHNVYGIMKPG-LNAILGPTGSGKSSLLDVLAARKHPAGlsGEVLIDGipqp 81
Cdd:cd03248 11 IVKFQNVTFAYPTRP---------DTLVLQDVSFTLHPGeVTALVGPSGSGKSTVVALLENFYQPQG--GQVLLDG---- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 82 pnfKCISGY----------VVQDDVVMGTMTVRENLhfSAALRLPSSISVKEKEDRVT--QIISEL--GLSKVADAKvGT 147
Cdd:cd03248 76 ---KPISQYehkylhskvsLVGQEPVLFARSLQDNI--AYGLQSCSFECVKEAAQKAHahSFISELasGYDTEVGEK-GS 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 148 EMirgvSGGERKRTSIGMELITEPPVLFLDEPTTGLDASTANAVLMLLKKLSRRgRTIIFSIHqpRYSIFKLFDSLTLLA 227
Cdd:cd03248 150 QL----SGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPER-RTVLVIAH--RLSTVERADQILVLD 222
|
....
gi 677296704 228 LGKV 231
Cdd:cd03248 223 GGRI 226
|
|
| artP |
PRK11124 |
arginine transporter ATP-binding subunit; Provisional |
45-211 |
4.19e-15 |
|
arginine transporter ATP-binding subunit; Provisional
Pssm-ID: 182980 [Multi-domain] Cd Length: 242 Bit Score: 75.05 E-value: 4.19e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 45 ILGPTGSGKSSLLDVLAARKHPAglSGEVLIDG----IPQPPNFKCIS------GYVVQDDVVMGTMTVRENLhFSAALR 114
Cdd:PRK11124 33 LLGPSGAGKSSLLRVLNLLEMPR--SGTLNIAGnhfdFSKTPSDKAIRelrrnvGMVFQQYNLWPHLTVQQNL-IEAPCR 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 115 LpSSISVKEKEDRVTQIISELGLSKVADAkvgteMIRGVSGGERKRTSIGMELITEPPVLFLDEPTTGLDASTANAVLML 194
Cdd:PRK11124 110 V-LGLSKDQALARAEKLLERLRLKPYADR-----FPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSI 183
|
170
....*....|....*..
gi 677296704 195 LKKLSRRGRTIIFSIHQ 211
Cdd:PRK11124 184 IRELAETGITQVIVTHE 200
|
|
| thiQ |
PRK10771 |
thiamine ABC transporter ATP-binding protein ThiQ; |
44-236 |
4.88e-15 |
|
thiamine ABC transporter ATP-binding protein ThiQ;
Pssm-ID: 182716 [Multi-domain] Cd Length: 232 Bit Score: 75.00 E-value: 4.88e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 44 AILGPTGSGKSSLLDVLAARKHPAglSGEVLIDGIPQ---PPNFKCISgYVVQDDVVMGTMTVREN--LHFSAALRLPSs 118
Cdd:PRK10771 29 AILGPSGAGKSTLLNLIAGFLTPA--SGSLTLNGQDHtttPPSRRPVS-MLFQENNLFSHLTVAQNigLGLNPGLKLNA- 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 119 isvkEKEDRVTQIISELGLSKVADAKVGTemirgVSGGERKRTSIGMELITEPPVLFLDEPTTGLDASTANAVLMLLKKL 198
Cdd:PRK10771 105 ----AQREKLHAIARQMGIEDLLARLPGQ-----LSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQV 175
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 677296704 199 SR-RGRTIIFSIHQ--------PRysifklfdSLtLLALGKVLYHGP 236
Cdd:PRK10771 176 CQeRQLTLLMVSHSledaariaPR--------SL-VVADGRIAWDGP 213
|
|
| SufC |
COG0396 |
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, ... |
27-213 |
4.91e-15 |
|
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440165 [Multi-domain] Cd Length: 245 Bit Score: 75.10 E-value: 4.91e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 27 EKKILHNVYGIMKPG-LNAILGPTGSGKSSLLDVLAArkHPA--GLSGEVLIDGI-------------------PQPPNF 84
Cdd:COG0396 12 GKEILKGVNLTIKPGeVHAIMGPNGSGKSTLAKVLMG--HPKyeVTSGSILLDGEdilelspderaragiflafQYPVEI 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 85 KcisgyvvqddvvmGtMTVRENLHFSAALRLPSSISVKEKEDRVTQIISELGLSKvadakvgtEMI-RGV----SGGERK 159
Cdd:COG0396 90 P-------------G-VSVSNFLRTALNARRGEELSAREFLKLLKEKMKELGLDE--------DFLdRYVnegfSGGEKK 147
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 677296704 160 RTSIGMELITEPPVLFLDEPTTGLDASTANAVLMLLKKLSRRGRTIIFSIHQPR 213
Cdd:COG0396 148 RNEILQMLLLEPKLAILDETDSGLDIDALRIVAEGVNKLRSPDRGILIITHYQR 201
|
|
| MdlB |
COG1132 |
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms]; |
44-206 |
4.98e-15 |
|
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms];
Pssm-ID: 440747 [Multi-domain] Cd Length: 579 Bit Score: 78.28 E-value: 4.98e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 44 AILGPTGSGKSSLLDvLAARKHPAGlSGEVLIDGIPqppnfkcISGY----------VVQDDVVMGTMTVRENLHFS--- 110
Cdd:COG1132 370 ALVGPSGSGKSTLVN-LLLRFYDPT-SGRILIDGVD-------IRDLtleslrrqigVVPQDTFLFSGTIRENIRYGrpd 440
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 111 -------AALRLPssisvkekedRVTQIISEL--GLskvaDAKVGTemiRGV--SGGERKRTSIGMELITEPPVLFLDEP 179
Cdd:COG1132 441 atdeeveEAAKAA----------QAHEFIEALpdGY----DTVVGE---RGVnlSGGQRQRIAIARALLKDPPILILDEA 503
|
170 180
....*....|....*....|....*..
gi 677296704 180 TTGLDASTANAVLMLLKKLsRRGRTII 206
Cdd:COG1132 504 TSALDTETEALIQEALERL-MKGRTTI 529
|
|
| DppD |
COG0444 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
44-207 |
5.87e-15 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440213 [Multi-domain] Cd Length: 320 Bit Score: 76.25 E-value: 5.87e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 44 AILGPTGSGKS----SLLDVLaarKHPAGLSGEVLIDGIP----QPPNFKCISG----YVVQDdvVMG----TMTVREnl 107
Cdd:COG0444 35 GLVGESGSGKStlarAILGLL---PPPGITSGEILFDGEDllklSEKELRKIRGreiqMIFQD--PMTslnpVMTVGD-- 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 108 HFSAALRLPSSISVKEKEDRVTQIISELGLSkvADAKVGT----EMirgvSGGERKRTSIGMELITEPPVLFLDEPTTGL 183
Cdd:COG0444 108 QIAEPLRIHGGLSKAEARERAIELLERVGLP--DPERRLDryphEL----SGGMRQRVMIARALALEPKLLIADEPTTAL 181
|
170 180
....*....|....*....|....*
gi 677296704 184 DASTANAVLMLLKKLSR-RGRTIIF 207
Cdd:COG0444 182 DVTIQAQILNLLKDLQReLGLAILF 206
|
|
| PRK09984 |
PRK09984 |
phosphonate ABC transporter ATP-binding protein; |
27-239 |
9.14e-15 |
|
phosphonate ABC transporter ATP-binding protein;
Pssm-ID: 182182 [Multi-domain] Cd Length: 262 Bit Score: 74.66 E-value: 9.14e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 27 EKKILHNV-YGIMKPGLNAILGPTGSGKSSLLdvlaarKHpagLSGEVLIDGIPQP-------------------PNFKC 86
Cdd:PRK09984 16 QHQALHAVdLNIHHGEMVALLGPSGSGKSTLL------RH---LSGLITGDKSAGShiellgrtvqregrlardiRKSRA 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 87 ISGYVVQDDVVMGTMTVRENLHFSAALRLP-----SSISVKEKEDRVTQIISELGLSKVADAKVGTemirgVSGGERKRT 161
Cdd:PRK09984 87 NTGYIFQQFNLVNRLSVLENVLIGALGSTPfwrtcFSWFTREQKQRALQALTRVGMVHFAHQRVST-----LSGGQQQRV 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 677296704 162 SIGMELITEPPVLFLDEPTTGLDASTANAVLMLLKKLSRR-GRTIIFSIHQPRYSIfKLFDSLTLLALGKVLYHGPAKQ 239
Cdd:PRK09984 162 AIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNdGITVVVTLHQVDYAL-RYCERIVALRQGHVFYDGSSQQ 239
|
|
| LivF |
COG0410 |
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid ... |
44-242 |
1.20e-14 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid transport and metabolism];
Pssm-ID: 440179 [Multi-domain] Cd Length: 236 Bit Score: 73.86 E-value: 1.20e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 44 AILGPTGSGKSSLLDVLAarkhpaGL----SGEVLIDGIP---QPPNFKC---IsGYVVQDDVVMGTMTVRENLHFSAAL 113
Cdd:COG0410 33 ALLGRNGAGKTTLLKAIS------GLlpprSGSIRFDGEDitgLPPHRIArlgI-GYVPEGRRIFPSLTVEENLLLGAYA 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 114 RlPSSISVKEKEDRVTQIISELGlsKVADAKVGTemirgVSGGERKRTSIGMELITEPPVLFLDEPTTGLDASTANAVLM 193
Cdd:COG0410 106 R-RDRAEVRADLERVYELFPRLK--ERRRQRAGT-----LSGGEQQMLAIGRALMSRPKLLLLDEPSLGLAPLIVEEIFE 177
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 677296704 194 LLKKLSRRGRTIIFS---IHQprysIFKLFDSLTLLALGKVLYHGPAKQALE 242
Cdd:COG0410 178 IIRRLNREGVTILLVeqnARF----ALEIADRAYVLERGRIVLEGTAAELLA 225
|
|
| tauB |
PRK11248 |
taurine ABC transporter ATP-binding subunit; |
28-229 |
1.23e-14 |
|
taurine ABC transporter ATP-binding subunit;
Pssm-ID: 183056 [Multi-domain] Cd Length: 255 Bit Score: 73.97 E-value: 1.23e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 28 KKILHNVYGIMKPG-LNAILGPTGSGKSSLLDVLAARKHPAglSGEVLIDGIP-QPPNFKciSGYVVQDDVVMGTMTVRE 105
Cdd:PRK11248 14 KPALEDINLTLESGeLLVVLGPSGCGKTTLLNLIAGFVPYQ--HGSITLDGKPvEGPGAE--RGVVFQNEGLLPWRNVQD 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 106 NLHFsaALRLpSSISVKEKEDRVTQIISELGLskvadAKVGTEMIRGVSGGERKRTSIGMELITEPPVLFLDEPTTGLDA 185
Cdd:PRK11248 90 NVAF--GLQL-AGVEKMQRLEIAHQMLKKVGL-----EGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDA 161
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 677296704 186 STANAVLMLLKKLSRR-GRTIIFSIHQPRYSIFkLFDSLTLLALG 229
Cdd:PRK11248 162 FTREQMQTLLLKLWQEtGKQVLLITHDIEEAVF-MATELVLLSPG 205
|
|
| MsbA_lipidA |
TIGR02203 |
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide ... |
27-242 |
1.61e-14 |
|
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]
Pssm-ID: 131258 [Multi-domain] Cd Length: 571 Bit Score: 76.68 E-value: 1.61e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 27 EKKILHNVYGIMKPG-LNAILGPTGSGKSSLLDVLAARKHPAglSGEVLIDGIP-QPPNFKCISGYV--VQDDVVMGTMT 102
Cdd:TIGR02203 344 DRPALDSISLVIEPGeTVALVGRSGSGKSTLVNLIPRFYEPD--SGQILLDGHDlADYTLASLRRQValVSQDVVLFNDT 421
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 103 VRENLHFSAalrlPSSISVKEKEDRV-----TQIISelGLSKVADAKVGTEMIRgVSGGERKRTSIGMELITEPPVLFLD 177
Cdd:TIGR02203 422 IANNIAYGR----TEQADRAEIERALaaayaQDFVD--KLPLGLDTPIGENGVL-LSGGQRQRLAIARALLKDAPILILD 494
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 677296704 178 EPTTGLDASTANAVLMLLKKLsRRGRTIIFSIHqpRYSIFKLFDSLTLLALGKVLYHGPAKQALE 242
Cdd:TIGR02203 495 EATSALDNESERLVQAALERL-MQGRTTLVIAH--RLSTIEKADRIVVMDDGRIVERGTHNELLA 556
|
|
| PRK13657 |
PRK13657 |
glucan ABC transporter ATP-binding protein/ permease; |
4-204 |
2.56e-14 |
|
glucan ABC transporter ATP-binding protein/ permease;
Pssm-ID: 184214 [Multi-domain] Cd Length: 588 Bit Score: 76.15 E-value: 2.56e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 4 VSFHNIQYSvkqssgFLCKRKTVekkilHNVYGIMKPGLN-AILGPTGSGKSSLLDVLAARKHPAglSGEVLIDGIpqpp 82
Cdd:PRK13657 335 VEFDDVSFS------YDNSRQGV-----EDVSFEAKPGQTvAIVGPTGAGKSTLINLLQRVFDPQ--SGRILIDGT---- 397
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 83 NFKCIS--------GYVVQDDVVMgTMTVRENLHF------SAALRLPSSIS-----VKEKEDRVTQIISELGlskvada 143
Cdd:PRK13657 398 DIRTVTraslrrniAVVFQDAGLF-NRSIEDNIRVgrpdatDEEMRAAAERAqahdfIERKPDGYDTVVGERG------- 469
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 677296704 144 kvgtemiRGVSGGERKRTSIGMELITEPPVLFLDEPTTGLDASTANAVLMLLKKLsRRGRT 204
Cdd:PRK13657 470 -------RQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDEL-MKGRT 522
|
|
| ABCC_MsbA |
cd03251 |
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; ... |
27-235 |
2.99e-14 |
|
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213218 [Multi-domain] Cd Length: 234 Bit Score: 72.65 E-value: 2.99e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 27 EKKILHNVYGIMKPG-LNAILGPTGSGKSSLLDVLAARKHPAglSGEVLIDGIPqppnfkcISGY----------VVQDD 95
Cdd:cd03251 14 GPPVLRDISLDIPAGeTVALVGPSGSGKSTLVNLIPRFYDVD--SGRILIDGHD-------VRDYtlaslrrqigLVSQD 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 96 VVMGTMTVRENLHFSAALRLPSSISVKEKEDRVTQIISEL--GLskvaDAKVGTemiRGV--SGGERKRTSIGMELITEP 171
Cdd:cd03251 85 VFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELpeGY----DTVIGE---RGVklSGGQRQRIAIARALLKDP 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 677296704 172 PVLFLDEPTTGLDASTANAVLMLLKKLSrRGRTIIFSIHqpRYSIFKLFDSLTLLALGKVLYHG 235
Cdd:cd03251 158 PILILDEATSALDTESERLVQAALERLM-KNRTTFVIAH--RLSTIENADRIVVLEDGKIVERG 218
|
|
| ABC_FeS_Assembly |
cd03217 |
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of ... |
27-243 |
3.84e-14 |
|
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Pssm-ID: 213184 [Multi-domain] Cd Length: 200 Bit Score: 71.40 E-value: 3.84e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 27 EKKILHNVYGIMKPG-LNAILGPTGSGKSSLLDVLAARKHPAGLSGEVLIDGipqppnfkcisgyvvqDDVVMGTMTVRE 105
Cdd:cd03217 12 GKEILKGVNLTIKKGeVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKG----------------EDITDLPPEERA 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 106 NLHFSAALRLPSSISvkekedrvtqiiselGLsKVADakvgteMIRGV----SGGERKRTSIGMELITEPPVLFLDEPTT 181
Cdd:cd03217 76 RLGIFLAFQYPPEIP---------------GV-KNAD------FLRYVnegfSGGEKKRNEILQLLLLEPDLAILDEPDS 133
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 677296704 182 GLDASTANAVLMLLKKLSRRGRTIIFSIHQPRysIFKLF--DSLTLLALGKVLYHGPAKQALEY 243
Cdd:cd03217 134 GLDIDALRLVAEVINKLREEGKSVLIITHYQR--LLDYIkpDRVHVLYDGRIVKSGDKELALEI 195
|
|
| CeuD |
COG4604 |
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and ... |
27-239 |
5.10e-14 |
|
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443654 [Multi-domain] Cd Length: 252 Bit Score: 72.04 E-value: 5.10e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 27 EKKILHNV-YGIMKPGLNAILGPTGSGKSSLLDvLAARKHPAGlSGEVLIDGIP---QPPNF--KCISgyVV-QDDVVMG 99
Cdd:COG4604 13 GKVVLDDVsLTIPKGGITALIGPNGAGKSTLLS-MISRLLPPD-SGEVLVDGLDvatTPSRElaKRLA--ILrQENHINS 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 100 TMTVRENLHFSaalRLPSSISVKEKEDR--VTQIISELGLSKVADAKVGTemirgVSGGERKRTSIGMELITEPPVLFLD 177
Cdd:COG4604 89 RLTVRELVAFG---RFPYSKGRLTAEDReiIDEAIAYLDLEDLADRYLDE-----LSGGQRQRAFIAMVLAQDTDYVLLD 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 677296704 178 EPTTGLDASTANAVLMLLKKLSR-RGRTIIFSIHQ----PRYSifklfDslTLLAL--GKVLYHGPAKQ 239
Cdd:COG4604 161 EPLNNLDMKHSVQMMKLLRRLADeLGKTVVIVLHDinfaSCYA-----D--HIVAMkdGRVVAQGTPEE 222
|
|
| PRK11264 |
PRK11264 |
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional |
30-239 |
6.36e-14 |
|
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Pssm-ID: 183063 [Multi-domain] Cd Length: 250 Bit Score: 72.09 E-value: 6.36e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 30 ILHNVYGIMKPG-LNAILGPTGSGKSSLLDVLAARKHPAGLS---GEVLIDG-IPQPPNFKCIS------GYVVQDDVVM 98
Cdd:PRK11264 18 VLHGIDLEVKPGeVVAIIGPSGSGKTTLLRCINLLEQPEAGTirvGDITIDTaRSLSQQKGLIRqlrqhvGFVFQNFNLF 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 99 GTMTVRENLhfsaalrLPSSISVK-EKEDRVTQIISELgLSKVADAKVGTEMIRGVSGGERKRTSIGMELITEPPVLFLD 177
Cdd:PRK11264 98 PHRTVLENI-------IEGPVIVKgEPKEEATARAREL-LAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFD 169
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 677296704 178 EPTTGLDASTANAVLMLLKKLSRRGRTIIFSIHQPRYSiFKLFDSLTLLALGKVLYHGPAKQ 239
Cdd:PRK11264 170 EPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFA-RDVADRAIFMDQGRIVEQGPAKA 230
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
38-210 |
6.59e-14 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 75.44 E-value: 6.59e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 38 MKPG-LNAILGPTGSGKSSLLDVLAArkHPAGLSGEVLIDGIPQPPNFKCIS---GYVVQDDVVMGTMTVRENLHFSAAL 113
Cdd:TIGR01257 1962 VRPGeCFGLLGVNGAGKTTTFKMLTG--DTTVTSGDATVAGKSILTNISDVHqnmGYCPQFDAIDDLLTGREHLYLYARL 2039
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 114 RlpsSISVKEKEDRVTQIISELGLSKVADAKVGTemirgVSGGERKRTSIGMELITEPPVLFLDEPTTGLDASTANAVLM 193
Cdd:TIGR01257 2040 R---GVPAEEIEKVANWSIQSLGLSLYADRLAGT-----YSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWN 2111
|
170
....*....|....*..
gi 677296704 194 LLKKLSRRGRTIIFSIH 210
Cdd:TIGR01257 2112 TIVSIIREGRAVVLTSH 2128
|
|
| COG4674 |
COG4674 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
29-206 |
9.23e-14 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443710 [Multi-domain] Cd Length: 250 Bit Score: 71.30 E-value: 9.23e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 29 KILHNVYGIMKPG-LNAILGPTGSGKSSLLDVLAARKHPAglSGEVLIDGIPqppnfkcISGYVVQDDVVMG-------- 99
Cdd:COG4674 24 KALNDLSLYVDPGeLRVIIGPNGAGKTTLMDVITGKTRPD--SGSVLFGGTD-------LTGLDEHEIARLGigrkfqkp 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 100 ----TMTVRENLHFS--------AALRLPSSisvKEKEDRVTQIISELGLSKVADAKVGTemirgVSGGERKRTSIGMEL 167
Cdd:COG4674 95 tvfeELTVFENLELAlkgdrgvfASLFARLT---AEERDRIEEVLETIGLTDKADRLAGL-----LSHGQKQWLEIGMLL 166
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 677296704 168 ITEPPVLFLDEPTTGL-DASTANAVLmLLKKLsRRGRTII 206
Cdd:COG4674 167 AQDPKLLLLDEPVAGMtDAETERTAE-LLKSL-AGKHSVV 204
|
|
| nickel_nikE |
TIGR02769 |
nickel import ATP-binding protein NikE; This family represents the NikE subunit of a ... |
2-204 |
1.13e-13 |
|
nickel import ATP-binding protein NikE; This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 131816 [Multi-domain] Cd Length: 265 Bit Score: 71.37 E-value: 1.13e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 2 SVVSFHNIQYSVkQSSGFLCKRKtvEKKILHNVYGIMKPGLN-AILGPTGSGKSSLLDVLAARKHPAglSGEVLIDGIP- 79
Cdd:TIGR02769 1 SLLEVRDVTHTY-RTGGLFGAKQ--RAPVLTNVSLSIEEGETvGLLGRSGCGKSTLARLLLGLEKPA--QGTVSFRGQDl 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 80 ------QPPNFKCISGYVVQD--DVVMGTMTVRENLhfSAALRLPSSISVKEKEDRVTQIISELGLskvaDAKVGTEMIR 151
Cdd:TIGR02769 76 yqldrkQRRAFRRDVQLVFQDspSAVNPRMTVRQII--GEPLRHLTSLDESEQKARIAELLDMVGL----RSEDADKLPR 149
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 677296704 152 GVSGGERKRTSIGMELITEPPVLFLDEPTTGLDASTANAVLMLLKKLSRRGRT 204
Cdd:TIGR02769 150 QLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGT 202
|
|
| PRK13651 |
PRK13651 |
cobalt transporter ATP-binding subunit; Provisional |
9-210 |
1.38e-13 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184210 [Multi-domain] Cd Length: 305 Bit Score: 72.04 E-value: 1.38e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 9 IQYSVKQSSGFLCKRKTVEKKILHNVYGIMKPG-LNAILGPTGSGKSSLLDVLAA-----------------RKHPAGLS 70
Cdd:PRK13651 1 MQIKVKNIVKIFNKKLPTELKALDNVSVEINQGeFIAIIGQTGSGKTTFIEHLNAlllpdtgtiewifkdekNKKKTKEK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 71 GEVLIDGIPQPPNFKCIS---------GYVVQ-DDVVMGTMTVRENLHFSaalrlPSSISVKEKE--DRVTQIISELGLS 138
Cdd:PRK13651 81 EKVLEKLVIQKTRFKKIKkikeirrrvGVVFQfAEYQLFEQTIEKDIIFG-----PVSMGVSKEEakKRAAKYIELVGLD 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 677296704 139 KVADAKVGTEMirgvSGGERKRTSIGMELITEPPVLFLDEPTTGLDASTANAVLMLLKKLSRRGRTIIFSIH 210
Cdd:PRK13651 156 ESYLQRSPFEL----SGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTH 223
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
44-207 |
1.56e-13 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 73.14 E-value: 1.56e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 44 AILGPTGSGKSSLLDVLAarkhpaGL----SGEVLIDGIPQPPNfkciS---------GYVVQDDVVMGTMTVRENLHFS 110
Cdd:COG3845 35 ALLGENGAGKSTLMKILY------GLyqpdSGEILIDGKPVRIR----SprdaialgiGMVHQHFMLVPNLTVAENIVLG 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 111 AALRLPSSISVKEKEDRVTQIISELGLSKVADAKVGTemirgVSGGERKRTSIGMELITEPPVLFLDEPTTGLDASTANA 190
Cdd:COG3845 105 LEPTKGGRLDRKAARARIRELSERYGLDVDPDAKVED-----LSVGEQQRVEILKALYRGARILILDEPTAVLTPQEADE 179
|
170
....*....|....*..
gi 677296704 191 VLMLLKKLSRRGRTIIF 207
Cdd:COG3845 180 LFEILRRLAAEGKSIIF 196
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
20-210 |
1.57e-13 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 73.20 E-value: 1.57e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 20 LCKRKTVEKKILHNVYGIMKPGLN-AILGPTGSGKSS----LLDVLAARkhpaglsGEVLIDGIP-QPPNFKCISGYVVQ 93
Cdd:PRK15134 291 ILKRTVDHNVVVKNISFTLRPGETlGLVGESGSGKSTtglaLLRLINSQ-------GEIWFDGQPlHNLNRRQLLPVRHR 363
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 94 DDVVM----GTMTVRENLH--FSAALRL-PSSISVKEKEDRVTQIISELGLSKVADAKVGTEMirgvSGGERKRTSIGME 166
Cdd:PRK15134 364 IQVVFqdpnSSLNPRLNVLqiIEEGLRVhQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEF----SGGQRQRIAIARA 439
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 677296704 167 LITEPPVLFLDEPTTGLDASTANAVLMLLKKLSRRGR-TIIFSIH 210
Cdd:PRK15134 440 LILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQlAYLFISH 484
|
|
| ntrCD |
TIGR01184 |
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits ... |
44-259 |
2.16e-13 |
|
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. [Transport and binding proteins, Anions, Transport and binding proteins, Other]
Pssm-ID: 130252 [Multi-domain] Cd Length: 230 Bit Score: 69.80 E-value: 2.16e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 44 AILGPTGSGKSSLLDVLAARKHPAglSGEVLIDG--IPQPPNFKCIsgyVVQDDVVMGTMTVRENLHFSAALRLPSsISV 121
Cdd:TIGR01184 15 SLIGHSGCGKSTLLNLISGLAQPT--SGGVILEGkqITEPGPDRMV---VFQNYSLLPWLTVRENIALAVDRVLPD-LSK 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 122 KEKEDRVTQIISELGLSKVADAKVGTemirgVSGGERKRTSIGMELITEPPVLFLDEPTTGLDAST-ANAVLMLLKKLSR 200
Cdd:TIGR01184 89 SERRAIVEEHIALVGLTEAADKRPGQ-----LSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTrGNLQEELMQIWEE 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 201 RGRTIIFSIHQPRYSIFkLFDSLTLLAlgkvlyHGPAkqaleyfSSIGYECE-PFNNPAD 259
Cdd:TIGR01184 164 HRVTVLMVTHDVDEALL-LSDRVVMLT------NGPA-------ANIGQILEvPFPRPRD 209
|
|
| TagH |
COG1134 |
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate ... |
6-244 |
2.55e-13 |
|
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440749 [Multi-domain] Cd Length: 245 Bit Score: 70.11 E-value: 2.55e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 6 FHNIQYSVKQSSGFLCKRKTVEKKILHNVYGIMKPGLN-AILGPTGSGKSSLLDVLaarkhpAGL----SGEVLIDGIPQ 80
Cdd:COG1134 17 YHEPSRSLKELLLRRRRTRREEFWALKDVSFEVERGESvGIIGRNGAGKSTLLKLI------AGIleptSGRVEVNGRVS 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 81 PPnfkcisgyvvqddVVMGT-----MTVRENLHFSAALRlpsSISVKEKEDRVTQII--SELGlsKVADAKVGTemirgV 153
Cdd:COG1134 91 AL-------------LELGAgfhpeLTGRENIYLNGRLL---GLSRKEIDEKFDEIVefAELG--DFIDQPVKT-----Y 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 154 SGGERKRTSIGMELITEPPVLFLDEPT-TGlDASTANAVLMLLKKLSRRGRTIIFSIHQPRySIFKLFDSLTLLALGKVL 232
Cdd:COG1134 148 SSGMRARLAFAVATAVDPDILLVDEVLaVG-DAAFQKKCLARIRELRESGRTVIFVSHSMG-AVRRLCDRAIWLEKGRLV 225
|
250
....*....|..
gi 677296704 233 YHGPAKQALEYF 244
Cdd:COG1134 226 MDGDPEEVIAAY 237
|
|
| cbiO |
PRK13637 |
energy-coupling factor transporter ATPase; |
27-248 |
3.53e-13 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237455 [Multi-domain] Cd Length: 287 Bit Score: 70.46 E-value: 3.53e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 27 EKKILHNVYGIMKPG-LNAILGPTGSGKSSLLdvlaarKHPAGL----SGEVLIDGI---PQPPNFKCIS---GYVVQ-D 94
Cdd:PRK13637 19 EKKALDNVNIEIEDGeFVGLIGHTGSGKSTLI------QHLNGLlkptSGKIIIDGVditDKKVKLSDIRkkvGLVFQyP 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 95 DVVMGTMTVRENLHFSaalrlPSSISVKEKE--DRVTQIISELGLS--KVADaKVGTEMirgvSGGERKRTSIGMELITE 170
Cdd:PRK13637 93 EYQLFEETIEKDIAFG-----PINLGLSEEEieNRVKRAMNIVGLDyeDYKD-KSPFEL----SGGQKRRVAIAGVVAME 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 171 PPVLFLDEPTTGLDASTANAVLMLLKKLSRR-GRTIIFSIHQPRySIFKLFDSLTLLALGKVLYHGPAKQA---LEYFSS 246
Cdd:PRK13637 163 PKILILDEPTAGLDPKGRDEILNKIKELHKEyNMTIILVSHSME-DVAKLADRIIVMNKGKCELQGTPREVfkeVETLES 241
|
..
gi 677296704 247 IG 248
Cdd:PRK13637 242 IG 243
|
|
| cbiO |
PRK13644 |
energy-coupling factor transporter ATPase; |
36-241 |
3.85e-13 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 106587 [Multi-domain] Cd Length: 274 Bit Score: 70.02 E-value: 3.85e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 36 GIMKPGLNAILGPTGSGKSSLLDVLAARKHPAglSGEVLIDGI-----PQPPNFKCISGYVVQD-DVVMGTMTVRENLHF 109
Cdd:PRK13644 24 VIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQ--KGKVLVSGIdtgdfSKLQGIRKLVGIVFQNpETQFVGRTVEEDLAF 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 110 SAA-LRLPSsISVKEKEDRVtqiISELGLSKVADAKVGTemirgVSGGERKRTSIGMELITEPPVLFLDEPTTGLDASTA 188
Cdd:PRK13644 102 GPEnLCLPP-IEIRKRVDRA---LAEIGLEKYRHRSPKT-----LSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSG 172
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 677296704 189 NAVLMLLKKLSRRGRTIIFSIHQprYSIFKLFDSLTLLALGKVLYHGPAKQAL 241
Cdd:PRK13644 173 IAVLERIKKLHEKGKTIVYITHN--LEELHDADRIIVMDRGKIVLEGEPENVL 223
|
|
| PRK10247 |
PRK10247 |
putative ABC transporter ATP-binding protein YbbL; Provisional |
14-184 |
3.89e-13 |
|
putative ABC transporter ATP-binding protein YbbL; Provisional
Pssm-ID: 182331 [Multi-domain] Cd Length: 225 Bit Score: 68.97 E-value: 3.89e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 14 KQSSGFLCKRK----TVEKKILHNVYGIMKPG-LNAILGPTGSGKSSLLDVLAARKHPAglSGEVLIDGIP----QPPNF 84
Cdd:PRK10247 2 QENSPLLQLQNvgylAGDAKILNNISFSLRAGeFKLITGPSGCGKSTLLKIVASLISPT--SGTLLFEGEDistlKPEIY 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 85 KCISGYVVQDDVVMGTmTVRENLHFSAALRlpssiSVKEKEDRVTQIISELGLskvaDAKVGTEMIRGVSGGERKRTSIG 164
Cdd:PRK10247 80 RQQVSYCAQTPTLFGD-TVYDNLIFPWQIR-----NQQPDPAIFLDDLERFAL----PDTILTKNIAELSGGEKQRISLI 149
|
170 180
....*....|....*....|
gi 677296704 165 MELITEPPVLFLDEPTTGLD 184
Cdd:PRK10247 150 RNLQFMPKVLLLDEITSALD 169
|
|
| AbcC |
COG1135 |
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism]; |
44-211 |
5.17e-13 |
|
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440750 [Multi-domain] Cd Length: 339 Bit Score: 70.49 E-value: 5.17e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 44 AILGPTGSGKSSLLDVLAARKHPAglSGEVLIDGIPqppnfkcIS--------------GYVVQDDVVMGTMTVRENLHF 109
Cdd:COG1135 35 GIIGYSGAGKSTLIRCINLLERPT--SGSVLVDGVD-------LTalserelraarrkiGMIFQHFNLLSSRTVAENVAL 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 110 saALRLpSSISVKEKEDRVTQIISELGLSKVADAKVGTemirgVSGGERKRTSIGMELITEPPVLFLDEPTTGLDASTAN 189
Cdd:COG1135 106 --PLEI-AGVPKAEIRKRVAELLELVGLSDKADAYPSQ-----LSGGQKQRVGIARALANNPKVLLCDEATSALDPETTR 177
|
170 180
....*....|....*....|...
gi 677296704 190 AVLMLLKKLSRR-GRTIIFSIHQ 211
Cdd:COG1135 178 SILDLLKDINRElGLTIVLITHE 200
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
44-207 |
6.50e-13 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 71.25 E-value: 6.50e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 44 AILGPTGSGKSSLLDVLAARKHPAglSGEVLIdgipqPPNFKCisGYVVQDDVVMGTMTVRENLhFSAALRLPSSISVKE 123
Cdd:COG0488 28 GLVGRNGAGKSTLLKILAGELEPD--SGEVSI-----PKGLRI--GYLPQEPPLDDDLTVLDTV-LDGDAELRALEAELE 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 124 K------------------------------EDRVTQIISELGLSKV-ADAKVGTemirgVSGGERKRTSIGMELITEPP 172
Cdd:COG0488 98 EleaklaepdedlerlaelqeefealggweaEARAEEILSGLGFPEEdLDRPVSE-----LSGGWRRRVALARALLSEPD 172
|
170 180 190
....*....|....*....|....*....|....*
gi 677296704 173 VLFLDEPTTGLDastANAVLMLLKKLSRRGRTIIF 207
Cdd:COG0488 173 LLLLDEPTNHLD---LESIEWLEEFLKNYPGTVLV 204
|
|
| COG4586 |
COG4586 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
22-236 |
7.35e-13 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443643 [Multi-domain] Cd Length: 323 Bit Score: 69.73 E-value: 7.35e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 22 KRKTVEKKILHNVYGIMKPG-LNAILGPTGSGKSSLLDVLAARKHPAglSGEVLIDG-IPqppnFKCISGYVVQDDVVMG 99
Cdd:COG4586 29 RREYREVEAVDDISFTIEPGeIVGFIGPNGAGKSTTIKMLTGILVPT--SGEVRVLGyVP----FKRRKEFARRIGVVFG 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 100 T-------MTVRENLHFSAALRlpsSISVKEKEDRVTQIISELGLSKVADAKVgtemiRGVSGGERKRTSIGMELITEPP 172
Cdd:COG4586 103 QrsqlwwdLPAIDSFRLLKAIY---RIPDAEYKKRLDELVELLDLGELLDTPV-----RQLSLGQRMRCELAAALLHRPK 174
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 677296704 173 VLFLDEPTTGLDASTANAVLMLLKKLSR-RGRTIIFSIHqprYS--IFKLFDSLTLLALGKVLYHGP 236
Cdd:COG4586 175 ILFLDEPTIGLDVVSKEAIREFLKEYNReRGTTILLTSH---DMddIEALCDRVIVIDHGRIIYDGS 238
|
|
| hmuV |
PRK13548 |
hemin importer ATP-binding subunit; Provisional |
28-241 |
8.70e-13 |
|
hemin importer ATP-binding subunit; Provisional
Pssm-ID: 237422 [Multi-domain] Cd Length: 258 Bit Score: 68.64 E-value: 8.70e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 28 KKILHNVYGIMKPG-LNAILGPTGSGKSSLLDVLAARKHPAglSGEVLIDG-----------------IPQPPN----FK 85
Cdd:PRK13548 15 RTLLDDVSLTLRPGeVVAILGPNGAGKSTLLRALSGELSPD--SGEVRLNGrpladwspaelarrravLPQHSSlsfpFT 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 86 cisgyvVQDDVVMGtmtvrenlhfsaalRLPSSISVKEKEDRVTQIISELGLSKVADAKvgtemIRGVSGGERKRTSIGM 165
Cdd:PRK13548 93 ------VEEVVAMG--------------RAPHGLSRAEDDALVAAALAQVDLAHLAGRD-----YPQLSGGEQQRVQLAR 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 166 ELI------TEPPVLFLDEPTTGLDASTANAVLMLLKKL-SRRGRTIIFSIHQ----PRYSifklfDSLTLLALGKVLYH 234
Cdd:PRK13548 148 VLAqlwepdGPPRWLLLDEPTSALDLAHQHHVLRLARQLaHERGLAVIVVLHDlnlaARYA-----DRIVLLHQGRLVAD 222
|
....*..
gi 677296704 235 GPAKQAL 241
Cdd:PRK13548 223 GTPAEVL 229
|
|
| sufC |
TIGR01978 |
FeS assembly ATPase SufC; SufC is part of the SUF system, shown in E. coli to consist of six ... |
27-242 |
8.95e-13 |
|
FeS assembly ATPase SufC; SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic () or associated with the membrane (). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]
Pssm-ID: 273907 [Multi-domain] Cd Length: 243 Bit Score: 68.44 E-value: 8.95e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 27 EKKILHNVYGIMKPG-LNAILGPTGSGKSSLLDVLAARKHPAGLSGEVLIDGipqppnfKCISGYVVQDDVVMGTMtvre 105
Cdd:TIGR01978 12 DKEILKGVNLTVKKGeIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKG-------QDLLELEPDERARAGLF---- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 106 nLHFSAALRLPSsISVKE---------KEDRVTQIISELGLSKVADAKVGT-----EMIR-----GVSGGERKRTSIGME 166
Cdd:TIGR01978 81 -LAFQYPEEIPG-VSNLEflrsalnarRSARGEEPLDLLDFEKLLKEKLALldmdeEFLNrsvneGFSGGEKKRNEILQM 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 677296704 167 LITEPPVLFLDEPTTGLDASTANAVLMLLKKLSRRGRTIIFSIHQPRysIFKLF--DSLTLLALGKVLYHGPAKQALE 242
Cdd:TIGR01978 159 ALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQR--LLNYIkpDYVHVLLDGRIVKSGDVELAKE 234
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
42-235 |
1.10e-12 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 71.58 E-value: 1.10e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 42 LNAILGPTGSGKSSLLDVLAARKHPAglSGEVLIDGIPQPPNFKCIS---GYVVQDDVVMGTMTVRENLHFSAALRlpsS 118
Cdd:TIGR01257 958 ITAFLGHNGAGKTTTLSILTGLLPPT--SGTVLVGGKDIETNLDAVRqslGMCPQHNILFHHLTVAEHILFYAQLK---G 1032
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 119 ISVKEKEDRVTQIISELGLSKVADakvgtEMIRGVSGGERKRTSIGMELITEPPVLFLDEPTTGLDASTANAVLMLLKKL 198
Cdd:TIGR01257 1033 RSWEEAQLEMEAMLEDTGLHHKRN-----EEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKY 1107
|
170 180 190
....*....|....*....|....*....|....*..
gi 677296704 199 sRRGRTIIFSIHQPRYSIFkLFDSLTLLALGKVLYHG 235
Cdd:TIGR01257 1108 -RSGRTIIMSTHHMDEADL-LGDRIAIISQGRLYCSG 1142
|
|
| PRK03695 |
PRK03695 |
vitamin B12-transporter ATPase; Provisional |
45-241 |
1.24e-12 |
|
vitamin B12-transporter ATPase; Provisional
Pssm-ID: 235150 [Multi-domain] Cd Length: 248 Bit Score: 68.04 E-value: 1.24e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 45 ILGPTGSGKSSLLDVLAarkhpaGL---SGEVLIDGIP----QPPNFKCISGYVVQDDVVMGTMTVRENLhfsaALRLPS 117
Cdd:PRK03695 27 LVGPNGAGKSTLLARMA------GLlpgSGSIQFAGQPleawSAAELARHRAYLSQQQTPPFAMPVFQYL----TLHQPD 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 118 SISVKEKEDRVTQIISELGLskvaDAKVGTeMIRGVSGGERKRT-------SIGMELITEPPVLFLDEPTTGLDASTANA 190
Cdd:PRK03695 97 KTRTEAVASALNEVAEALGL----DDKLGR-SVNQLSGGEWQRVrlaavvlQVWPDINPAGQLLLLDEPMNSLDVAQQAA 171
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 677296704 191 VLMLLKKLSRRGRTIIFSIHQPRYSiFKLFDSLTLLALGKVLYHGPAKQAL 241
Cdd:PRK03695 172 LDRLLSELCQQGIAVVMSSHDLNHT-LRHADRVWLLKQGKLLASGRRDEVL 221
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
44-207 |
1.28e-12 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 70.43 E-value: 1.28e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 44 AILGPTGSGKSSLLDVLAARkHPAGlSGEVLIDGipQPPNFKCIS-------GYVVQDDVVMGTMTVRENLHFSAALRLP 116
Cdd:COG1129 34 ALLGENGAGKSTLMKILSGV-YQPD-SGEILLDG--EPVRFRSPRdaqaagiAIIHQELNLVPNLSVAENIFLGREPRRG 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 117 SSISVKEKEDRVTQIISELGLSKVADAKVGTemirgVSGGERKRTSIGMELITEPPVLFLDEPTTGLDASTANAVLMLLK 196
Cdd:COG1129 110 GLIDWRAMRRRARELLARLGLDIDPDTPVGD-----LSVAQQQLVEIARALSRDARVLILDEPTASLTEREVERLFRIIR 184
|
170
....*....|.
gi 677296704 197 KLSRRGRTIIF 207
Cdd:COG1129 185 RLKAQGVAIIY 195
|
|
| ABC_Pro_Gly_Betaine |
cd03294 |
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This ... |
45-264 |
1.47e-12 |
|
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213261 [Multi-domain] Cd Length: 269 Bit Score: 68.05 E-value: 1.47e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 45 ILGPTGSGKSSLLDVLAARKHPAglSGEVLIDGIPqppnfkcIS---------------GYVVQDDVVMGTMTVRENLHF 109
Cdd:cd03294 55 IMGLSGSGKSTLLRCINRLIEPT--SGKVLIDGQD-------IAamsrkelrelrrkkiSMVFQSFALLPHRTVLENVAF 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 110 SAALRlpsSISVKEKEDRVTQIISELGLSKVADAKvgtemIRGVSGGERKRTSIGMELITEPPVLFLDEPTTGLDASTAN 189
Cdd:cd03294 126 GLEVQ---GVPRAEREERAAEALELVGLEGWEHKY-----PDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRR 197
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 190 AVLMLLKKLSR-RGRTIIFSIHQPRYSIfKLFDSLTLLALGKVLyhgpakqaleyfsSIGYECEPFNNPAD-----FFLD 263
Cdd:cd03294 198 EMQDELLRLQAeLQKTIVFITHDLDEAL-RLGDRIAIMKDGRLV-------------QVGTPEEILTNPANdyvreFFRG 263
|
.
gi 677296704 264 I 264
Cdd:cd03294 264 V 264
|
|
| ABC_KpsT_Wzt |
cd03220 |
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC ... |
2-235 |
1.59e-12 |
|
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2.
Pssm-ID: 213187 [Multi-domain] Cd Length: 224 Bit Score: 67.17 E-value: 1.59e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 2 SVVSFHNIQYSVKQSSGFLCKRKTVEKKILHNVYGIMKPGLN-AILGPTGSGKSSLLDVLAARKHPAglSGEVLIDGIPQ 80
Cdd:cd03220 9 SYPTYKGGSSSLKKLGILGRKGEVGEFWALKDVSFEVPRGERiGLIGRNGAGKSTLLRLLAGIYPPD--SGTVTVRGRVS 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 81 PPnFKCISGyvvqddvVMGTMTVRENLHFSAALrlpSSISVKEKEDRVTQII--SELGlsKVADAKVGTemirgVSGGER 158
Cdd:cd03220 87 SL-LGLGGG-------FNPELTGRENIYLNGRL---LGLSRKEIDEKIDEIIefSELG--DFIDLPVKT-----YSSGMK 148
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 677296704 159 KRTSIGMELITEPPVLFLDEPTTGLDASTANAVLMLLKKLSRRGRTIIFSIHQPRySIFKLFDSLTLLALGKVLYHG 235
Cdd:cd03220 149 ARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPS-SIKRLCDRALVLEKGKIRFDG 224
|
|
| PhnL |
COG4778 |
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion ... |
30-206 |
1.67e-12 |
|
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion transport and metabolism];
Pssm-ID: 443809 [Multi-domain] Cd Length: 229 Bit Score: 67.46 E-value: 1.67e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 30 ILHNVYGIMKPGLN------------AILGPTGSGKSSLLDVLAARKHPAglSGEVLIDGIPQPPNFKCIS--------- 88
Cdd:COG4778 15 TLHLQGGKRLPVLDgvsfsvaagecvALTGPSGAGKSTLLKCIYGNYLPD--SGSILVRHDGGWVDLAQASpreilalrr 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 89 ---GYVVQ----------DDVVMgtmtvrenlhfSAALRLpsSISVKEKEDRVTQIISELGL-SKVADAKVGTemirgVS 154
Cdd:COG4778 93 rtiGYVSQflrviprvsaLDVVA-----------EPLLER--GVDREEARARARELLARLNLpERLWDLPPAT-----FS 154
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 677296704 155 GGERKRTSIGMELITEPPVLFLDEPTTGLDASTANAVLMLLKKLSRRGRTII 206
Cdd:COG4778 155 GGEQQRVNIARGFIADPPLLLLDEPTASLDAANRAVVVELIEEAKARGTAII 206
|
|
| ABC_MTABC3_MDL1_MDL2 |
cd03249 |
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 ... |
27-235 |
2.02e-12 |
|
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Pssm-ID: 213216 [Multi-domain] Cd Length: 238 Bit Score: 67.18 E-value: 2.02e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 27 EKKILHNVYGIMKPGLN-AILGPTGSGKSSLLDVLAARKHPagLSGEVLIDGIP----QPPNFKCISGYVVQDDVVMGTm 101
Cdd:cd03249 15 DVPILKGLSLTIPPGKTvALVGSSGCGKSTVVSLLERFYDP--TSGEILLDGVDirdlNLRWLRSQIGLVSQEPVLFDG- 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 102 TVRENLHFSAalrlpSSISVKEKEDRVTQ-----IISEL--GLSKVADAKvGTEMirgvSGGERKRTSIGMELITEPPVL 174
Cdd:cd03249 92 TIAENIRYGK-----PDATDEEVEEAAKKanihdFIMSLpdGYDTLVGER-GSQL----SGGQKQRIAIARALLRNPKIL 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 677296704 175 FLDEPTTGLDASTANAVLMLLKKLsRRGRTIIFSIHqpRYSIFKLFDSLTLLALGKVLYHG 235
Cdd:cd03249 162 LLDEATSALDAESEKLVQEALDRA-MKGRTTIVIAH--RLSTIRNADLIAVLQNGQVVEQG 219
|
|
| nikD |
PRK10418 |
nickel transporter ATP-binding protein NikD; Provisional |
44-237 |
2.27e-12 |
|
nickel transporter ATP-binding protein NikD; Provisional
Pssm-ID: 236688 [Multi-domain] Cd Length: 254 Bit Score: 67.42 E-value: 2.27e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 44 AILGPTGSGKS----SLLDVLaarkhPAG---LSGEVLIDGIPQPPNfkCISGYVVQddVVMG----------TMT--VR 104
Cdd:PRK10418 33 ALVGGSGSGKSltcaAALGIL-----PAGvrqTAGRVLLDGKPVAPC--ALRGRKIA--TIMQnprsafnplhTMHthAR 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 105 ENLhfsAALRLPSSisvkekEDRVTQIISELGLSKVAdaKV----GTEMirgvSGGERKRTSIGMELITEPPVLFLDEPT 180
Cdd:PRK10418 104 ETC---LALGKPAD------DATLTAALEAVGLENAA--RVlklyPFEM----SGGMLQRMMIALALLCEAPFIIADEPT 168
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 677296704 181 TGLDASTANAVLMLLKKLSR-RGRTIIFSIHQPRYsIFKLFDSLTLLALGKVLYHGPA 237
Cdd:PRK10418 169 TDLDVVAQARILDLLESIVQkRALGMLLVTHDMGV-VARLADDVAVMSHGRIVEQGDV 225
|
|
| ABC2_membrane_7 |
pfam19055 |
ABC-2 type transporter; |
210-267 |
3.87e-12 |
|
ABC-2 type transporter;
Pssm-ID: 465963 [Multi-domain] Cd Length: 409 Bit Score: 68.39 E-value: 3.87e-12
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 677296704 210 HQPRYSIFKLFDSLTLLALG-KVLYHGPAKQALEYFSSIGYECEPFNNPADFFLDIING 267
Cdd:pfam19055 1 HQPSYTLFKMFDDLILLAKGgLTVYHGPVKKVEEYFAGLGINVPERVNPPDHFIDILEG 59
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
23-214 |
3.97e-12 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 68.81 E-value: 3.97e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 23 RKTVE--KKILHNVYGIMKPGLN-AILGPTGSGKSSLLDVLAarkhpaGLSGEVLIDGIPQPpNFKCisGYVVQDDVVMG 99
Cdd:TIGR03719 11 SKVVPpkKEILKDISLSFFPGAKiGVLGLNGAGKSTLLRIMA------GVDKDFNGEARPQP-GIKV--GYLPQEPQLDP 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 100 TMTVRENL-----HFSAALRLPSSISVK--EKEDRVTQIISELG-LSKVADAKVGTEMIRGV------------------ 153
Cdd:TIGR03719 82 TKTVRENVeegvaEIKDALDRFNEISAKyaEPDADFDKLAAEQAeLQEIIDAADAWDLDSQLeiamdalrcppwdadvtk 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 677296704 154 -SGGERKRTSIGMELITEPPVLFLDEPTTGLDASTanaVLMLLKKLSRRGRTIIFSIHQpRY 214
Cdd:TIGR03719 162 lSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAES---VAWLERHLQEYPGTVVAVTHD-RY 219
|
|
| potA |
PRK09452 |
spermidine/putrescine ABC transporter ATP-binding protein PotA; |
45-210 |
4.23e-12 |
|
spermidine/putrescine ABC transporter ATP-binding protein PotA;
Pssm-ID: 236523 [Multi-domain] Cd Length: 375 Bit Score: 68.05 E-value: 4.23e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 45 ILGPTGSGKSSLLDVLAARKHPAglSGEVLIDGipqppnfKCISGY---------VVQDDVVMGTMTVRENLHFsaALRL 115
Cdd:PRK09452 45 LLGPSGCGKTTVLRLIAGFETPD--SGRIMLDG-------QDITHVpaenrhvntVFQSYALFPHMTVFENVAF--GLRM 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 116 pSSISVKEKEDRVTQIISELGLSKVADAKvgtemIRGVSGGERKRTSIGMELITEPPVLFLDEPTTGLDASTANAVLMLL 195
Cdd:PRK09452 114 -QKTPAAEITPRVMEALRMVQLEEFAQRK-----PHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNEL 187
|
170
....*....|....*.
gi 677296704 196 KKLSRR-GRTIIFSIH 210
Cdd:PRK09452 188 KALQRKlGITFVFVTH 203
|
|
| potG |
PRK11607 |
putrescine ABC transporter ATP-binding subunit PotG; |
37-210 |
4.23e-12 |
|
putrescine ABC transporter ATP-binding subunit PotG;
Pssm-ID: 183226 [Multi-domain] Cd Length: 377 Bit Score: 67.94 E-value: 4.23e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 37 IMKPGLNAILGPTGSGKSSLLDVLAARKHPAglSGEVLIDGIP---QPPNFKCISgYVVQDDVVMGTMTVRENLHFSAAL 113
Cdd:PRK11607 42 IYKGEIFALLGASGCGKSTLLRMLAGFEQPT--AGQIMLDGVDlshVPPYQRPIN-MMFQSYALFPHMTVEQNIAFGLKQ 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 114 -RLPSSisvkEKEDRVTQIISELGLSKVADAKVgtemiRGVSGGERKRTSIGMELITEPPVLFLDEPTTGLDASTANAV- 191
Cdd:PRK11607 119 dKLPKA----EIASRVNEMLGLVHMQEFAKRKP-----HQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMq 189
|
170
....*....|....*....
gi 677296704 192 LMLLKKLSRRGRTIIFSIH 210
Cdd:PRK11607 190 LEVVDILERVGVTCVMVTH 208
|
|
| PRK14247 |
PRK14247 |
phosphate ABC transporter ATP-binding protein; Provisional |
42-239 |
4.79e-12 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172735 [Multi-domain] Cd Length: 250 Bit Score: 66.47 E-value: 4.79e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 42 LNAILGPTGSGKSSLLDVL--AARKHP-AGLSGEVLIDG--------------------IPQP-PNfkcisgyvvqddvv 97
Cdd:PRK14247 31 ITALMGPSGSGKSTLLRVFnrLIELYPeARVSGEVYLDGqdifkmdvielrrrvqmvfqIPNPiPN-------------- 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 98 mgtMTVRENLHFSAAL-RLPSsiSVKEKEDRVTQIISELGLSKVADAKVGTEMIRgVSGGERKRTSIGMELITEPPVLFL 176
Cdd:PRK14247 97 ---LSIFENVALGLKLnRLVK--SKKELQERVRWALEKAQLWDEVKDRLDAPAGK-LSGGQQQRLCIARALAFQPEVLLA 170
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 677296704 177 DEPTTGLDASTANAVLMLLKKLsRRGRTIIFSIHQPRYSIfKLFDSLTLLALGKVLYHGPAKQ 239
Cdd:PRK14247 171 DEPTANLDPENTAKIESLFLEL-KKDMTIVLVTHFPQQAA-RISDYVAFLYKGQIVEWGPTRE 231
|
|
| PRK10619 |
PRK10619 |
histidine ABC transporter ATP-binding protein HisP; |
44-239 |
5.31e-12 |
|
histidine ABC transporter ATP-binding protein HisP;
Pssm-ID: 182592 [Multi-domain] Cd Length: 257 Bit Score: 66.53 E-value: 5.31e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 44 AILGPTGSGKSSLLDVLAARKHPAGLS---------------GEVLIDGIPQPPNFKCISGYVVQDDVVMGTMTVRENLH 108
Cdd:PRK10619 35 SIIGSSGSGKSTFLRCINFLEKPSEGSivvngqtinlvrdkdGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVM 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 109 FSAALRLpsSISVKEKEDRVTQIISELGLSKVADAKVGTEMirgvSGGERKRTSIGMELITEPPVLFLDEPTTGLDASTA 188
Cdd:PRK10619 115 EAPIQVL--GLSKQEARERAVKYLAKVGIDERAQGKYPVHL----SGGQQQRVSIARALAMEPEVLLFDEPTSALDPELV 188
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 677296704 189 NAVLMLLKKLSRRGRTIIFSIHQPRYSiFKLFDSLTLLALGKVLYHGPAKQ 239
Cdd:PRK10619 189 GEVLRIMQQLAEEGKTMVVVTHEMGFA-RHVSSHVIFLHQGKIEEEGAPEQ 238
|
|
| 3a01208 |
TIGR00958 |
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other] |
27-242 |
9.63e-12 |
|
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273363 [Multi-domain] Cd Length: 711 Bit Score: 68.21 E-value: 9.63e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 27 EKKILHNVYGIMKPG-LNAILGPTGSGKSSLLDVLAARKHPAGlsGEVLIDGIPQPpNFKCIS-----GYVVQDDVVMGT 100
Cdd:TIGR00958 493 DVPVLKGLTFTLHPGeVVALVGPSGSGKSTVAALLQNLYQPTG--GQVLLDGVPLV-QYDHHYlhrqvALVGQEPVLFSG 569
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 101 mTVRENLHFSAALRLPSSISVKEKEDRVTQIISEL--GLSKVADAKvGTEMirgvSGGERKRTSIGMELITEPPVLFLDE 178
Cdd:TIGR00958 570 -SVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFpnGYDTEVGEK-GSQL----SGGQKQRIAIARALVRKPRVLILDE 643
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 677296704 179 PTTGLDASTANAVLMLlkkLSRRGRTIIFSIHqpRYSIFKLFDSLTLLALGKVLYHGPAKQALE 242
Cdd:TIGR00958 644 ATSALDAECEQLLQES---RSRASRTVLLIAH--RLSTVERADQILVLKKGSVVEMGTHKQLME 702
|
|
| cbiO |
PRK13643 |
energy-coupling factor transporter ATPase; |
3-210 |
1.24e-11 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184203 [Multi-domain] Cd Length: 288 Bit Score: 65.91 E-value: 1.24e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 3 VVSFHNIQYSVKQSSGFlckrktVEKKILHNVYGIMKPGLNAILGPTGSGKSSLLDVLAARKHPAGLS---GEVLIDGIP 79
Cdd:PRK13643 1 MIKFEKVNYTYQPNSPF------ASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKvtvGDIVVSSTS 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 80 QPPNFKCIS---GYVVQ-DDVVMGTMTVRENLHFSaalrlPSS--ISVKEKEDRVTQIISELGLSKVADAKVGTEMirgv 153
Cdd:PRK13643 75 KQKEIKPVRkkvGVVFQfPESQLFEETVLKDVAFG-----PQNfgIPKEKAEKIAAEKLEMVGLADEFWEKSPFEL---- 145
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 677296704 154 SGGERKRTSIGMELITEPPVLFLDEPTTGLDASTANAVLMLLKKLSRRGRTIIFSIH 210
Cdd:PRK13643 146 SGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTH 202
|
|
| hmuV |
PRK13547 |
heme ABC transporter ATP-binding protein; |
30-241 |
1.25e-11 |
|
heme ABC transporter ATP-binding protein;
Pssm-ID: 184132 [Multi-domain] Cd Length: 272 Bit Score: 65.62 E-value: 1.25e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 30 ILHNVYGIMKPG-LNAILGPTGSGKSSLLDVLA------ARKHPAGLSGEVLIDGIP----QPPNFKCISGYVVQDDVVM 98
Cdd:PRK13547 16 ILRDLSLRIEPGrVTALLGRNGAGKSTLLKALAgdltggGAPRGARVTGDVTLNGEPlaaiDAPRLARLRAVLPQAAQPA 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 99 GTMTVRENLHFSaalRLPSSISVKEKEDRVTQIISELGLSKVADAKVGTEmIRGVSGGERKRTSIGMEL---------IT 169
Cdd:PRK13547 96 FAFSAREIVLLG---RYPHARRAGALTHRDGEIAWQALALAGATALVGRD-VTTLSGGELARVQFARVLaqlwpphdaAQ 171
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 677296704 170 EPPVLFLDEPTTGLDASTANAVLMLLKKLSRRGRTIIFSI-HQP----RYSifklfDSLTLLALGKVLYHGPAKQAL 241
Cdd:PRK13547 172 PPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIvHDPnlaaRHA-----DRIAMLADGAIVAHGAPADVL 243
|
|
| PRK10908 |
PRK10908 |
cell division ATP-binding protein FtsE; |
16-210 |
1.30e-11 |
|
cell division ATP-binding protein FtsE;
Pssm-ID: 182829 [Multi-domain] Cd Length: 222 Bit Score: 64.51 E-value: 1.30e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 16 SSGFLCKRKTVEKKILHnvygiMKPGLNAIL-GPTGSGKSSLLDVLAARKHPAglSGEVLIDG-------IPQPPNFKCI 87
Cdd:PRK10908 8 SKAYLGGRQALQGVTFH-----MRPGEMAFLtGHSGAGKSTLLKLICGIERPS--AGKIWFSGhditrlkNREVPFLRRQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 88 SGYVVQDDVVMGTMTVRENLhfsaalRLPSSISVKEKED---RVTQIISELGLSKvadaKVGTEMIRgVSGGERKRTSIG 164
Cdd:PRK10908 81 IGMIFQDHHLLMDRTVYDNV------AIPLIIAGASGDDirrRVSAALDKVGLLD----KAKNFPIQ-LSGGEQQRVGIA 149
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 677296704 165 MELITEPPVLFLDEPTTGLDASTANAVLMLLKKLSRRGRTIIFSIH 210
Cdd:PRK10908 150 RAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATH 195
|
|
| PRK15056 |
PRK15056 |
manganese/iron ABC transporter ATP-binding protein; |
44-238 |
1.82e-11 |
|
manganese/iron ABC transporter ATP-binding protein;
Pssm-ID: 185016 [Multi-domain] Cd Length: 272 Bit Score: 64.90 E-value: 1.82e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 44 AILGPTGSGKSSLLDVLAARKHPAglSGEVLIDGIPQPPNFK-CISGYVVQ------------DDVVM----GTMtvren 106
Cdd:PRK15056 37 ALVGVNGSGKSTLFKALMGFVRLA--SGKISILGQPTRQALQkNLVAYVPQseevdwsfpvlvEDVVMmgryGHM----- 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 107 lhfsAALRLPSSisvkekEDRvtQIISElGLSKVADAKVGTEMIRGVSGGERKRTSIGMELITEPPVLFLDEPTTGLDAS 186
Cdd:PRK15056 110 ----GWLRRAKK------RDR--QIVTA-ALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVK 176
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 677296704 187 TANAVLMLLKKLSRRGRTIIFSIHQprYSIFKLFDSLTLLALGKVLYHGPAK 238
Cdd:PRK15056 177 TEARIISLLRELRDEGKTMLVSTHN--LGSVTEFCDYTVMVKGTVLASGPTE 226
|
|
| ABCC_MRP_domain1 |
cd03250 |
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This ... |
22-214 |
2.87e-11 |
|
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213217 [Multi-domain] Cd Length: 204 Bit Score: 63.26 E-value: 2.87e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 22 KRKTVEKKILHNVYGIMKPG-LNAILGPTGSGKSSLLDVLAARKHPagLSGEVLIdgipqPPNFkcisGYVVQDDVVMgT 100
Cdd:cd03250 12 SGEQETSFTLKDINLEVPKGeLVAIVGPVGSGKSSLLSALLGELEK--LSGSVSV-----PGSI----AYVSQEPWIQ-N 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 101 MTVRENLHFSAALRlpssisvkekEDRVTQIISELGLSKvaDAKV---GTEMI---RGV--SGGERKRTSIGMELITEPP 172
Cdd:cd03250 80 GTIRENILFGKPFD----------EERYEKVIKACALEP--DLEIlpdGDLTEigeKGInlSGGQKQRISLARAVYSDAD 147
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 677296704 173 VLFLDEPTTGLDASTANAVL-MLLKKLSRRGRTIIFSIHQPRY 214
Cdd:cd03250 148 IYLLDDPLSAVDAHVGRHIFeNCILGLLLNNKTRILVTHQLQL 190
|
|
| cbiO |
PRK13641 |
energy-coupling factor transporter ATPase; |
4-242 |
3.43e-11 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237456 [Multi-domain] Cd Length: 287 Bit Score: 64.47 E-value: 3.43e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 4 VSFHNIQYSVKQSSGFlckrktvEKKILHNV-YGIMKPGLNAILGPTGSGKSSLLDVLAARKHPAglSGEVLIDGIPQPP 82
Cdd:PRK13641 3 IKFENVDYIYSPGTPM-------EKKGLDNIsFELEEGSFVALVGHTGSGKSTLMQHFNALLKPS--SGTITIAGYHITP 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 83 -----NFKCIS---GYVVQ-DDVVMGTMTVRENLHFSaalrlPSSISVKEKEDRVTQI--ISELGLSKVADAKVGTEMir 151
Cdd:PRK13641 74 etgnkNLKKLRkkvSLVFQfPEAQLFENTVLKDVEFG-----PKNFGFSEDEAKEKALkwLKKVGLSEDLISKSPFEL-- 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 152 gvSGGERKRTSIGMELITEPPVLFLDEPTTGLDASTANAVLMLLKKLSRRGRTIIFSIHQPRySIFKLFDSLTLLALGKV 231
Cdd:PRK13641 147 --SGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMD-DVAEYADDVLVLEHGKL 223
|
250
....*....|.
gi 677296704 232 LYHGPAKQALE 242
Cdd:PRK13641 224 IKHASPKEIFS 234
|
|
| PRK10851 |
PRK10851 |
sulfate/thiosulfate ABC transporter ATP-binding protein CysA; |
29-185 |
3.49e-11 |
|
sulfate/thiosulfate ABC transporter ATP-binding protein CysA;
Pssm-ID: 182778 [Multi-domain] Cd Length: 353 Bit Score: 65.11 E-value: 3.49e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 29 KILHNVYGIMKPG-LNAILGPTGSGKSSLLDVLAARKHPAglSGEVLIDGipqppnfKCIS---------GYVVQDDVVM 98
Cdd:PRK10851 16 QVLNDISLDIPSGqMVALLGPSGSGKTTLLRIIAGLEHQT--SGHIRFHG-------TDVSrlhardrkvGFVFQHYALF 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 99 GTMTVRENLHFSAAL----RLPSSISVKEKedrVTQIISELGLSKVADaKVGTEMirgvSGGERKRTSIGMELITEPPVL 174
Cdd:PRK10851 87 RHMTVFDNIAFGLTVlprrERPNAAAIKAK---VTQLLEMVQLAHLAD-RYPAQL----SGGQKQRVALARALAVEPQIL 158
|
170
....*....|.
gi 677296704 175 FLDEPTTGLDA 185
Cdd:PRK10851 159 LLDEPFGALDA 169
|
|
| glnQ |
PRK09493 |
glutamine ABC transporter ATP-binding protein GlnQ; |
24-211 |
4.97e-11 |
|
glutamine ABC transporter ATP-binding protein GlnQ;
Pssm-ID: 181906 [Multi-domain] Cd Length: 240 Bit Score: 63.19 E-value: 4.97e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 24 KTVEKK-----ILHNVYGIMKPG-LNAILGPTGSGKSSLLDVLAARKHPAGlsGEVLIDGIP------QPPNFKCISGYV 91
Cdd:PRK09493 5 KNVSKHfgptqVLHNIDLNIDQGeVVVIIGPSGSGKSTLLRCINKLEEITS--GDLIVDGLKvndpkvDERLIRQEAGMV 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 92 VQDDVVMGTMTVRENLHFSaalrlPSSI---SVKEKEDRVTQIISELGLSKVADaKVGTEMirgvSGGERKRTSIGMELI 168
Cdd:PRK09493 83 FQQFYLFPHLTALENVMFG-----PLRVrgaSKEEAEKQARELLAKVGLAERAH-HYPSEL----SGGQQQRVAIARALA 152
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 677296704 169 TEPPVLFLDEPTTGLDASTANAVLMLLKKLSRRGRTIIFSIHQ 211
Cdd:PRK09493 153 VKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHE 195
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
44-236 |
5.18e-11 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 65.46 E-value: 5.18e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 44 AILGPTGSGKSSLLDVLAARKHPAglSGEVLIDGIPQ----PPNFKCISGYVV-QDDVVMGTMTVRENLHFsaalRLPSS 118
Cdd:PRK15439 41 ALLGGNGAGKSTLMKIIAGIVPPD--SGTLEIGGNPCarltPAKAHQLGIYLVpQEPLLFPNLSVKENILF----GLPKR 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 119 isvKEKEDRVTQIISELGLSKVADAKVGT---------EMIRGvsggerkrtsigmeLITEPPVLFLDEPTTGLDASTAN 189
Cdd:PRK15439 115 ---QASMQKMKQLLAALGCQLDLDSSAGSlevadrqivEILRG--------------LMRDSRILILDEPTASLTPAETE 177
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 677296704 190 AVLMLLKKLSRRGRTIIFSIHQPRySIFKLFDSLTLLALGKVLYHGP 236
Cdd:PRK15439 178 RLFSRIRELLAQGVGIVFISHKLP-EIRQLADRISVMRDGTIALSGK 223
|
|
| ABC_Carb_Monos_I |
cd03216 |
First domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
44-231 |
5.73e-11 |
|
First domain of the ATP-binding cassette component of monosaccharide transport system; This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213183 [Multi-domain] Cd Length: 163 Bit Score: 61.29 E-value: 5.73e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 44 AILGPTGSGKSSLLDVLAARKHPAglSGEVLIDGIPQPPNfkcisgyvvqddvvmgtmTVREnlhfsaALRLpssisvke 123
Cdd:cd03216 30 ALLGENGAGKSTLMKILSGLYKPD--SGEILVDGKEVSFA------------------SPRD------ARRA-------- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 124 kedrvtqiiselglskvadakvGTEMIRGVSGGERKRTSIGMELITEPPVLFLDEPTTGLDASTANAVLMLLKKLSRRGR 203
Cdd:cd03216 76 ----------------------GIAMVYQLSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGV 133
|
170 180
....*....|....*....|....*...
gi 677296704 204 TIIFSIHQPRySIFKLFDSLTLLALGKV 231
Cdd:cd03216 134 AVIFISHRLD-EVFEIADRVTVLRDGRV 160
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
44-230 |
6.16e-11 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 64.93 E-value: 6.16e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 44 AILGPTGSGKSSLLDVLAARKHPAglSGEVLIDGIPQppNFKCI-----SGYVV--QDDVVMGTMTVRENLHFSaalRLP 116
Cdd:PRK11288 34 ALMGENGAGKSTLLKILSGNYQPD--AGSILIDGQEM--RFASTtaalaAGVAIiyQELHLVPEMTVAENLYLG---QLP 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 117 SSISVKEKED---RVTQIISELGLSKVADAKVGTemirgVSGGERKRTSIGMELITEPPVLFLDEPTTGLDASTANAVLM 193
Cdd:PRK11288 107 HKGGIVNRRLlnyEAREQLEHLGVDIDPDTPLKY-----LSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFR 181
|
170 180 190
....*....|....*....|....*....|....*..
gi 677296704 194 LLKKLSRRGRTIIFSIHQPRySIFKLFDSLTLLALGK 230
Cdd:PRK11288 182 VIRELRAEGRVILYVSHRME-EIFALCDAITVFKDGR 217
|
|
| PRK10535 |
PRK10535 |
macrolide ABC transporter ATP-binding protein/permease MacB; |
44-212 |
6.18e-11 |
|
macrolide ABC transporter ATP-binding protein/permease MacB;
Pssm-ID: 182528 [Multi-domain] Cd Length: 648 Bit Score: 65.52 E-value: 6.18e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 44 AILGPTGSGKSSLLDVLAARKHPAglSGEVLIDGipqppnfKCIS---------------GYVVQDDVVMGTMTVRENLH 108
Cdd:PRK10535 38 AIVGASGSGKSTLMNILGCLDKPT--SGTYRVAG-------QDVAtldadalaqlrrehfGFIFQRYHLLSHLTAAQNVE 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 109 FSAALrlpSSISVKEKEDRVTQIISELGLSKVADAKVGTemirgVSGGERKRTSIGMELITEPPVLFLDEPTTGLDASTA 188
Cdd:PRK10535 109 VPAVY---AGLERKQRLLRAQELLQRLGLEDRVEYQPSQ-----LSGGQQQRVSIARALMNGGQVILADEPTGALDSHSG 180
|
170 180
....*....|....*....|....
gi 677296704 189 NAVLMLLKKLSRRGRTIIFSIHQP 212
Cdd:PRK10535 181 EEVMAILHQLRDRGHTVIIVTHDP 204
|
|
| ABC_Carb_Monos_II |
cd03215 |
Second domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
44-207 |
6.65e-11 |
|
Second domain of the ATP-binding cassette component of monosaccharide transport system; This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213182 [Multi-domain] Cd Length: 182 Bit Score: 61.68 E-value: 6.65e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 44 AILGPTGSGKSSLLDVLAARKHPAglSGEVLIDGipQPPNFKCIS-------GYVVQD---DVVMGTMTVRENLHFSAAL 113
Cdd:cd03215 30 GIAGLVGNGQTELAEALFGLRPPA--SGEITLDG--KPVTRRSPRdairagiAYVPEDrkrEGLVLDLSVAENIALSSLL 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 114 rlpssisvkekedrvtqiiselglskvadakvgtemirgvSGGERKRTSIGMELITEPPVLFLDEPTTGLDASTANAVLM 193
Cdd:cd03215 106 ----------------------------------------SGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYR 145
|
170
....*....|....
gi 677296704 194 LLKKLSRRGRTIIF 207
Cdd:cd03215 146 LIRELADAGKAVLL 159
|
|
| PRK10895 |
PRK10895 |
lipopolysaccharide ABC transporter ATP-binding protein; Provisional |
28-241 |
8.05e-11 |
|
lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Pssm-ID: 182817 [Multi-domain] Cd Length: 241 Bit Score: 62.60 E-value: 8.05e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 28 KKILHNVYGIMKPG-LNAILGPTGSGKSSLLDV---LAARKhpaglSGEVLIDG-----IPQPPNFKCISGYVVQDDVVM 98
Cdd:PRK10895 16 RRVVEDVSLTVNSGeIVGLLGPNGAGKTTTFYMvvgIVPRD-----AGNIIIDDedislLPLHARARRGIGYLPQEASIF 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 99 GTMTVRENLhfSAALRLPSSISVKEKEDRVTQIISELGLSKVADAkvgteMIRGVSGGERKRTSIGMELITEPPVLFLDE 178
Cdd:PRK10895 91 RRLSVYDNL--MAVLQIRDDLSAEQREDRANELMEEFHIEHLRDS-----MGQSLSGGERRRVEIARALAANPKFILLDE 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 677296704 179 PTTGLDASTANAVLMLLKKLSRRGRTIIFSIHQPRYSIfKLFDSLTLLALGKVLYHGPAKQAL 241
Cdd:PRK10895 164 PFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETL-AVCERAYIVSQGHLIAHGTPTEIL 225
|
|
| PRK10789 |
PRK10789 |
SmdA family multidrug ABC transporter permease/ATP-binding protein; |
27-242 |
1.11e-10 |
|
SmdA family multidrug ABC transporter permease/ATP-binding protein;
Pssm-ID: 182732 [Multi-domain] Cd Length: 569 Bit Score: 64.35 E-value: 1.11e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 27 EKKILHNVYGIMKPG-LNAILGPTGSGKSSLLDVLaaRKHPAGLSGEVLIDGIPQPpnfkcisgyVVQDDVVMGTMTVRE 105
Cdd:PRK10789 327 DHPALENVNFTLKPGqMLGICGPTGSGKSTLLSLI--QRHFDVSEGDIRFHDIPLT---------KLQLDSWRSRLAVVS 395
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 106 NLHF--------SAALRLPSSisVKEKEDRVTQIISE----LGLSKVADAKVGTemiRGV--SGGERKRTSIGMELITEP 171
Cdd:PRK10789 396 QTPFlfsdtvanNIALGRPDA--TQQEIEHVARLASVhddiLRLPQGYDTEVGE---RGVmlSGGQKQRISIARALLLNA 470
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 677296704 172 PVLFLDEPTTGLDASTANAVLMLLKKLsRRGRTIIFSIHqpRYSIFKLFDSLTLLALGKVLYHGPAKQALE 242
Cdd:PRK10789 471 EILILDDALSAVDGRTEHQILHNLRQW-GEGRTVIISAH--RLSALTEASEILVMQHGHIAQRGNHDQLAQ 538
|
|
| GlnQ |
COG1126 |
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and ... |
44-206 |
1.12e-10 |
|
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440743 [Multi-domain] Cd Length: 239 Bit Score: 61.93 E-value: 1.12e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 44 AILGPTGSGKSSLLDVLAarkhpaGL----SGEVLIDGIPQPPNFKCI------SGYVVQD-----DvvmgtMTVRENLh 108
Cdd:COG1126 31 VIIGPSGSGKSTLLRCIN------LLeepdSGTITVDGEDLTDSKKDInklrrkVGMVFQQfnlfpH-----LTVLENV- 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 109 fSAALRLPSSISVKEKEDRVTQIISELGLSKVADAKVGTemirgVSGGERKRTSIGMELITEPPVLFLDEPTTGLDASTA 188
Cdd:COG1126 99 -TLAPIKVKKMSKAEAEERAMELLERVGLADKADAYPAQ-----LSGGQQQRVAIARALAMEPKVMLFDEPTSALDPELV 172
|
170
....*....|....*...
gi 677296704 189 NAVLMLLKKLSRRGRTII 206
Cdd:COG1126 173 GEVLDVMRDLAKEGMTMV 190
|
|
| cbiO |
PRK13647 |
cobalt transporter ATP-binding subunit; Provisional |
44-210 |
1.19e-10 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237457 [Multi-domain] Cd Length: 274 Bit Score: 62.45 E-value: 1.19e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 44 AILGPTGSGKSSLLDVLAARKHPAglSGEVLIDGIP-QPPNFKCIS---GYVVQD-DVVMGTMTVRENLHFSAA-LRLps 117
Cdd:PRK13647 35 ALLGPNGAGKSTLLLHLNGIYLPQ--RGRVKVMGREvNAENEKWVRskvGLVFQDpDDQVFSSTVWDDVAFGPVnMGL-- 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 118 siSVKEKEDRVTQIISELGLSKVADakvgtEMIRGVSGGERKRTSIGMELITEPPVLFLDEPTTGLDASTANAVLMLLKK 197
Cdd:PRK13647 111 --DKDEVERRVEEALKAVRMWDFRD-----KPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDR 183
|
170
....*....|...
gi 677296704 198 LSRRGRTIIFSIH 210
Cdd:PRK13647 184 LHNQGKTVIVATH 196
|
|
| cbiO |
PRK13634 |
cobalt transporter ATP-binding subunit; Provisional |
27-239 |
1.58e-10 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237454 [Multi-domain] Cd Length: 290 Bit Score: 62.34 E-value: 1.58e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 27 EKKILHNVYGIMKPG-LNAILGPTGSGKSSLLDVLAARKHPAGLS---GEVLIDGIPQPPNFKCIS---GYVVQ-DDVVM 98
Cdd:PRK13634 19 ERRALYDVNVSIPSGsYVAIIGHTGSGKSTLLQHLNGLLQPTSGTvtiGERVITAGKKNKKLKPLRkkvGIVFQfPEHQL 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 99 GTMTVRENLHFSaalrlPSSISVKEKE--DRVTQIISELGLSKVADAKVGTEMirgvSGGERKRTSIGMELITEPPVLFL 176
Cdd:PRK13634 99 FEETVEKDICFG-----PMNFGVSEEDakQKAREMIELVGLPEELLARSPFEL----SGGQMRRVAIAGVLAMEPEVLVL 169
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 677296704 177 DEPTTGLDASTANAVLMLLKKLSR-RGRTIIFSIHQ----PRYSifklfDSLTLLALGKVLYHGPAKQ 239
Cdd:PRK13634 170 DEPTAGLDPKGRKEMMEMFYKLHKeKGLTTVLVTHSmedaARYA-----DQIVVMHKGTVFLQGTPRE 232
|
|
| cbiO |
PRK13646 |
energy-coupling factor transporter ATPase; |
4-210 |
1.64e-10 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184205 [Multi-domain] Cd Length: 286 Bit Score: 62.49 E-value: 1.64e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 4 VSFHNIQYSVKQSSGFlckrktvEKKILHNVYGIMKPG-LNAILGPTGSGKSSLLDVLAARKHPAglSGEVLIDGIP--- 79
Cdd:PRK13646 3 IRFDNVSYTYQKGTPY-------EHQAIHDVNTEFEQGkYYAIVGQTGSGKSTLIQNINALLKPT--TGTVTVDDITith 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 80 --QPPNFKCIS---GYVVQ-------DDVVMgtmtvRENLHFSAALRLPssisVKEKEDRVTQIISELGLSKVADAKVGT 147
Cdd:PRK13646 74 ktKDKYIRPVRkriGMVFQfpesqlfEDTVE-----REIIFGPKNFKMN----LDEVKNYAHRLLMDLGFSRDVMSQSPF 144
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 677296704 148 EMirgvSGGERKRTSIGMELITEPPVLFLDEPTTGLDASTANAVLMLLKKLS-RRGRTIIFSIH 210
Cdd:PRK13646 145 QM----SGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQtDENKTIILVSH 204
|
|
| ycf16 |
CHL00131 |
sulfate ABC transporter protein; Validated |
27-251 |
1.66e-10 |
|
sulfate ABC transporter protein; Validated
Pssm-ID: 214372 [Multi-domain] Cd Length: 252 Bit Score: 61.97 E-value: 1.66e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 27 EKKILHNVYGIMKPG-LNAILGPTGSGKSSLLDVLAArkHPAG--LSGEVLIDGIpqppnfkcisgyvvqdDVVMGTMTV 103
Cdd:CHL00131 19 ENEILKGLNLSINKGeIHAIMGPNGSGKSTLSKVIAG--HPAYkiLEGDILFKGE----------------SILDLEPEE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 104 RENLHFSAALRLPSSISVKEKED--RVT-------------------QIISE-LGLSKVADAKVGTEMIRGVSGGERKRT 161
Cdd:CHL00131 81 RAHLGIFLAFQYPIEIPGVSNADflRLAynskrkfqglpeldpleflEIINEkLKLVGMDPSFLSRNVNEGFSGGEKKRN 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 162 SIGMELITEPPVLFLDEPTTGLDASTANAVLMLLKKLSRRGRTIIFSIHQPRYSIFKLFDSLTLLALGKVLYHGPAKQAL 241
Cdd:CHL00131 161 EILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTGDAELAK 240
|
250
....*....|
gi 677296704 242 EyFSSIGYEC 251
Cdd:CHL00131 241 E-LEKKGYDW 249
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
44-201 |
2.62e-10 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 63.16 E-value: 2.62e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 44 AILGPTGSGKSSL-LDVLaaRKHPAglSGEVLIDGIPqppnfkcISGY--------------VVQDDvvMGT----MTVR 104
Cdd:COG4172 316 GLVGESGSGKSTLgLALL--RLIPS--EGEIRFDGQD-------LDGLsrralrplrrrmqvVFQDP--FGSlsprMTVG 382
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 105 ----ENLHFsaalrLPSSISVKEKEDRVTQIISELGLSKVADAKVGTEMirgvSGGERKRTSIGMELITEPPVLFLDEPT 180
Cdd:COG4172 383 qiiaEGLRV-----HGPGLSAAERRARVAEALEEVGLDPAARHRYPHEF----SGGQRQRIAIARALILEPKLLVLDEPT 453
|
170 180
....*....|....*....|.
gi 677296704 181 TGLDASTANAVLMLLKKLSRR 201
Cdd:COG4172 454 SALDVSVQAQILDLLRDLQRE 474
|
|
| cbiO |
PRK13649 |
energy-coupling factor transporter ATPase; |
4-210 |
2.92e-10 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184208 [Multi-domain] Cd Length: 280 Bit Score: 61.68 E-value: 2.92e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 4 VSFHNIQYSVKQSSGFlckrktvEKKILHNVYGIMKPG-LNAILGPTGSGKSSLLDVLAARKHPAglSGEVLIDGI---P 79
Cdd:PRK13649 3 INLQNVSYTYQAGTPF-------EGRALFDVNLTIEDGsYTAFIGHTGSGKSTIMQLLNGLHVPT--QGSVRVDDTlitS 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 80 QPPN--FKCIS---GYVVQ-DDVVMGTMTVRENLHFSaalrlPSS--ISVKEKEDRVTQIISELGLSKVADAKVGTEMir 151
Cdd:PRK13649 74 TSKNkdIKQIRkkvGLVFQfPESQLFEETVLKDVAFG-----PQNfgVSQEEAEALAREKLALVGISESLFEKNPFEL-- 146
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 677296704 152 gvSGGERKRTSIGMELITEPPVLFLDEPTTGLDASTANAVLMLLKKLSRRGRTIIFSIH 210
Cdd:PRK13649 147 --SGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTH 203
|
|
| ATM1 |
COG5265 |
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components ... |
27-206 |
2.95e-10 |
|
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444078 [Multi-domain] Cd Length: 605 Bit Score: 63.30 E-value: 2.95e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 27 EKKILHNVYGIMKPGLN-AILGPTGSGKSSLL-------DVLaarkhpaglSGEVLIDG-----IPQPPNFKCIsGYVVQ 93
Cdd:COG5265 370 ERPILKGVSFEVPAGKTvAIVGPSGAGKSTLArllfrfyDVT---------SGRILIDGqdirdVTQASLRAAI-GIVPQ 439
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 94 DdVVMGTMTVRENLHFSAAlrlpsSISVKEKED--RVTQI---ISEL--GLskvaDAKVGtEmiRGV--SGGERKRTSIG 164
Cdd:COG5265 440 D-TVLFNDTIAYNIAYGRP-----DASEEEVEAaaRAAQIhdfIESLpdGY----DTRVG-E--RGLklSGGEKQRVAIA 506
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 677296704 165 MELITEPPVLFLDEPTTGLDASTANAVLMLLKKLSrRGRTII 206
Cdd:COG5265 507 RTLLKNPPILIFDEATSALDSRTERAIQAALREVA-RGRTTL 547
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
45-244 |
2.99e-10 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 62.90 E-value: 2.99e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 45 ILGPTGSGKSSLLDVLAARKHPAGLSGEVLID-------GIPQPPNF------KCISGYVVQD-DVVMGTMTVRENLHFS 110
Cdd:TIGR03269 31 ILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHvalcekcGYVERPSKvgepcpVCGGTLEPEEvDFWNLSDKLRRRIRKR 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 111 AALRLPSSISVKEKE---DRVTQIISELGLSKVADAKVGTEMI-------------RGVSGGERKRTSIGMELITEPPVL 174
Cdd:TIGR03269 111 IAIMLQRTFALYGDDtvlDNVLEALEEIGYEGKEAVGRAVDLIemvqlshrithiaRDLSGGEKQRVVLARQLAKEPFLF 190
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 677296704 175 FLDEPTTGLDASTANAVL-MLLKKLSRRGRTIIFSIHQPRYsIFKLFDSLTLLALGKVLYHGPAKQALEYF 244
Cdd:TIGR03269 191 LADEPTGTLDPQTAKLVHnALEEAVKASGISMVLTSHWPEV-IEDLSDKAIWLENGEIKEEGTPDEVVAVF 260
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
27-196 |
5.20e-10 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 62.00 E-value: 5.20e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 27 EKKILHNVYGIMKPG--LnAILGPTGSGKSSLLDVLAARKHPagLSGEVLIdGipqpPNFKciSGYVVQD-DVVMGTMTV 103
Cdd:COG0488 327 DKTLLDDLSLRIDRGdrI-GLIGPNGAGKSTLLKLLAGELEP--DSGTVKL-G----ETVK--IGYFDQHqEELDPDKTV 396
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 104 RENLhfsaalrlpSSISVKEKEDRVTQIISELGLS-KVADAKVGTemirgVSGGERKRTSIGMELITEPPVLFLDEPTTG 182
Cdd:COG0488 397 LDEL---------RDGAPGGTEQEVRGYLGRFLFSgDDAFKPVGV-----LSGGEKARLALAKLLLSPPNVLLLDEPTNH 462
|
170
....*....|....
gi 677296704 183 LDASTANAVLMLLK 196
Cdd:COG0488 463 LDIETLEALEEALD 476
|
|
| livF |
PRK11614 |
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF; |
29-232 |
5.21e-10 |
|
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF;
Pssm-ID: 183231 [Multi-domain] Cd Length: 237 Bit Score: 60.28 E-value: 5.21e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 29 KILHNVYGIMKPG-LNAILGPTGSGKSSLLDVLAArkHPAGLSGEVLIDG--IPQPPNFKCIS---GYVVQDDVVMGTMT 102
Cdd:PRK11614 19 QALHEVSLHINQGeIVTLIGANGAGKTTLLGTLCG--DPRATSGRIVFDGkdITDWQTAKIMReavAIVPEGRRVFSRMT 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 103 VRENLHFSAALrlPSSISVKEKEDRVTQIISELGLSKVADAkvGTemirgVSGGERKRTSIGMELITEPPVLFLDEPTTG 182
Cdd:PRK11614 97 VEENLAMGGFF--AERDQFQERIKWVYELFPRLHERRIQRA--GT-----MSGGEQQMLAIGRALMSQPRLLLLDEPSLG 167
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 677296704 183 LDASTANAVLMLLKKLSRRGRTiIFSIHQPRYSIFKLFDSLTLLALGKVL 232
Cdd:PRK11614 168 LAPIIIQQIFDTIEQLREQGMT-IFLVEQNANQALKLADRGYVLENGHVV 216
|
|
| PRK14267 |
PRK14267 |
phosphate ABC transporter ATP-binding protein; Provisional |
37-242 |
6.64e-10 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184596 [Multi-domain] Cd Length: 253 Bit Score: 60.24 E-value: 6.64e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 37 IMKPGLNAILGPTGSGKSSLL---DVLAARKHPAGLSGEVLIDGIP------QPPNFKCISGYVVQDDVVMGTMTVRENL 107
Cdd:PRK14267 27 IPQNGVFALMGPSGCGKSTLLrtfNRLLELNEEARVEGEVRLFGRNiyspdvDPIEVRREVGMVFQYPNPFPHLTIYDNV 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 108 hfSAALRLPSSISVKEKEDRVTqiisELGLSKVADAKVGTEMIR----GVSGGERKRTSIGMELITEPPVLFLDEPTTGL 183
Cdd:PRK14267 107 --AIGVKLNGLVKSKKELDERV----EWALKKAALWDEVKDRLNdypsNLSGGQRQRLVIARALAMKPKILLMDEPTANI 180
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 677296704 184 DASTANAVLMLLKKLsRRGRTIIFSIHQPRYSIfKLFDSLTLLALGKVLYHGPAKQALE 242
Cdd:PRK14267 181 DPVGTAKIEELLFEL-KKEYTIVLVTHSPAQAA-RVSDYVAFLYLGKLIEVGPTRKVFE 237
|
|
| cbiO |
PRK13638 |
energy-coupling factor ABC transporter ATP-binding protein; |
42-235 |
7.21e-10 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184198 [Multi-domain] Cd Length: 271 Bit Score: 60.41 E-value: 7.21e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 42 LNAILGPTGSGKSSLLDVLAARKHPAglSGEVLIDGIPQPPNFKCI------SGYVVQD-DVVMGTMTVRENLHFSaaLR 114
Cdd:PRK13638 29 VTGLVGANGCGKSTLFMNLSGLLRPQ--KGAVLWQGKPLDYSKRGLlalrqqVATVFQDpEQQIFYTDIDSDIAFS--LR 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 115 lpsSISVKEKEdrVTQIISElGLSKVADAKVGTEMIRGVSGGERKRTSIGMELITEPPVLFLDEPTTGLDASTANAVLML 194
Cdd:PRK13638 105 ---NLGVPEAE--ITRRVDE-ALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAI 178
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 677296704 195 LKKLSRRGRTIIFSIHQPRYsIFKLFDSLTLLALGKVLYHG 235
Cdd:PRK13638 179 IRRIVAQGNHVIISSHDIDL-IYEISDAVYVLRQGQILTHG 218
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
45-207 |
7.89e-10 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 61.57 E-value: 7.89e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 45 ILGPTG---SGKSSLLDVLAARKHPAglSGEVLIDGipQPPNFKCIS-------GYVVQD---DVVMGTMTVRENLHFSA 111
Cdd:COG1129 280 ILGIAGlvgAGRTELARALFGADPAD--SGEIRLDG--KPVRIRSPRdairagiAYVPEDrkgEGLVLDLSIRENITLAS 355
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 112 ALRLPSS--ISVKEKEDRVTQIISELGLsKVADAKvgtEMIRGVSGGERKRTSIGMELITEPPVLFLDEPTTGLDASTAN 189
Cdd:COG1129 356 LDRLSRGglLDRRRERALAEEYIKRLRI-KTPSPE---QPVGNLSGGNQQKVVLAKWLATDPKVLILDEPTRGIDVGAKA 431
|
170
....*....|....*...
gi 677296704 190 AVLMLLKKLSRRGRTIIF 207
Cdd:COG1129 432 EIYRLIRELAAEGKAVIV 449
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
31-235 |
1.02e-09 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 61.34 E-value: 1.02e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 31 LHNVYGIMKPG-LNAILGPTGSGKSSLLDVLAARKHPAglSGEVLIDGIPQPPNFKCIS-----GYVVQDDVVMGTMTVR 104
Cdd:PRK09700 21 LKSVNLTVYPGeIHALLGENGAGKSTLMKVLSGIHEPT--KGTITINNINYNKLDHKLAaqlgiGIIYQELSVIDELTVL 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 105 ENLHFSaalRLPSS-------ISVKEKEDRVTQIISELGLSKVADAKVGTemirgVSGGERKRTSIGMELITEPPVLFLD 177
Cdd:PRK09700 99 ENLYIG---RHLTKkvcgvniIDWREMRVRAAMMLLRVGLKVDLDEKVAN-----LSISHKQMLEIAKTLMLDAKVIIMD 170
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 677296704 178 EPTTGLDASTANAVLMLLKKLSRRGRTIIFSIHQPRySIFKLFDSLTLLALGKVLYHG 235
Cdd:PRK09700 171 EPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLA-EIRRICDRYTVMKDGSSVCSG 227
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
23-187 |
1.21e-09 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 60.90 E-value: 1.21e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 23 RKTV--EKKILHNVYGIMKPGlnA---ILGPTGSGKSSLLDVLAarkhpaGL----SGEVlidgIPQPpNFKCisGYVVQ 93
Cdd:PRK11819 13 SKVVppKKQILKDISLSFFPG--AkigVLGLNGAGKSTLLRIMA------GVdkefEGEA----RPAP-GIKV--GYLPQ 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 94 DDVVMGTMTVRENL-----HFSAALRLPSSISVK------------EKEDRVTQIISELGL----SKV-----------A 141
Cdd:PRK11819 78 EPQLDPEKTVRENVeegvaEVKAALDRFNEIYAAyaepdadfdalaAEQGELQEIIDAADAwdldSQLeiamdalrcppW 157
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 677296704 142 DAKVGTemirgVSGGERKRTSIGMELITEPPVLFLDEPTTGLDAST 187
Cdd:PRK11819 158 DAKVTK-----LSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAES 198
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
154-239 |
1.44e-09 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 60.87 E-value: 1.44e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 154 SGGERKRTSIGMELITEPPVLFLDEPTTGLDASTANAVLMLLKKLSRR-GRTIIFSIHQPRySIFKLFDSLTLLALGKVL 232
Cdd:PRK15134 158 SGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQElNMGLLFITHNLS-IVRKLADRVAVMQNGRCV 236
|
....*..
gi 677296704 233 YHGPAKQ 239
Cdd:PRK15134 237 EQNRAAT 243
|
|
| ugpC |
PRK11650 |
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC; |
45-204 |
1.51e-09 |
|
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC;
Pssm-ID: 236947 [Multi-domain] Cd Length: 356 Bit Score: 59.86 E-value: 1.51e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 45 ILGPTGSGKSSLLDVLAarkhpaGL----SGEVLIDGipqppnfkcisgYVVQD------DVVM--------GTMTVREN 106
Cdd:PRK11650 35 LVGPSGCGKSTLLRMVA------GLeritSGEIWIGG------------RVVNElepadrDIAMvfqnyalyPHMSVREN 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 107 LHFSAALR-LPSSisvkEKEDRVTQIISELGLSKVADAKVgtemiRGVSGGERKRTSIGMELITEPPVLFLDEPTTGLDA 185
Cdd:PRK11650 97 MAYGLKIRgMPKA----EIEERVAEAARILELEPLLDRKP-----RELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDA 167
|
170
....*....|....*....
gi 677296704 186 STANAVLMLLKKLSRRGRT 204
Cdd:PRK11650 168 KLRVQMRLEIQRLHRRLKT 186
|
|
| bacteriocin_ABC |
TIGR01193 |
ABC-type bacteriocin transporter; This model describes ABC-type bacteriocin transporter. The ... |
29-243 |
2.02e-09 |
|
ABC-type bacteriocin transporter; This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]
Pssm-ID: 130261 [Multi-domain] Cd Length: 708 Bit Score: 60.52 E-value: 2.02e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 29 KILHNV-YGIMKPGLNAILGPTGSGKSSLLDVLAARKHPAglSGEVLIDGIPqppnFKCIS--------GYVVQDDVVMg 99
Cdd:TIGR01193 488 NILSDIsLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQAR--SGEILLNGFS----LKDIDrhtlrqfiNYLPQEPYIF- 560
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 100 TMTVRENLHFSAALRLP-----SSISVKEKEDRVTQIISELGLSKVADAKvgtemirGVSGGERKRTSIGMELITEPPVL 174
Cdd:TIGR01193 561 SGSILENLLLGAKENVSqdeiwAACEIAEIKDDIENMPLGYQTELSEEGS-------SISGGQKQRIALARALLTDSKVL 633
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 677296704 175 FLDEPTTGLDASTANAVLMLLKKLSRrgRTIIFSIHqpRYSIFKLFDSLTLLALGKVLYHGPAKQALEY 243
Cdd:TIGR01193 634 ILDESTSNLDTITEKKIVNNLLNLQD--KTIIFVAH--RLSVAKQSDKIIVLDHGKIIEQGSHDELLDR 698
|
|
| 40850658_otr |
NF000106 |
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit; |
104-235 |
2.45e-09 |
|
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit;
Pssm-ID: 411078 [Multi-domain] Cd Length: 351 Bit Score: 59.36 E-value: 2.45e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 104 RENLHFsaaLRLPSSISVKEKEDRVTQIISELGLSKVADAKVGTemirgVSGGERKRTSIGMELITEPPVLFLDEPTTGL 183
Cdd:NF000106 104 RENLYM---IGR*LDLSRKDARARADELLERFSLTEAAGRAAAK-----YSGGMRRRLDLAASMIGRPAVLYLDEPTTGL 175
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 677296704 184 DASTANAVLMLLKKLSRRGRTIIFSIhQPRYSIFKLFDSLTLLALGKVLYHG 235
Cdd:NF000106 176 DPRTRNEVWDEVRSMVRDGATVLLTT-QYMEEAEQLAHELTVIDRGRVIADG 226
|
|
| nikE |
PRK10419 |
nickel ABC transporter ATP-binding protein NikE; |
15-204 |
3.02e-09 |
|
nickel ABC transporter ATP-binding protein NikE;
Pssm-ID: 236689 [Multi-domain] Cd Length: 268 Bit Score: 58.16 E-value: 3.02e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 15 QSSGFLCKRKTveKKILHNVYGIMKPGLN-AILGPTGSGKSSLLDVLAARKHPAGlsGEVLIDGIP-------QPPNFKC 86
Cdd:PRK10419 14 AHGGLSGKHQH--QTVLNNVSLSLKSGETvALLGRSGCGKSTLARLLVGLESPSQ--GNVSWRGEPlaklnraQRKAFRR 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 87 ISGYVVQDDV--VMGTMTVRENLhfSAALRLPSSISVKEKEDRVTQIISELGLskvaDAKVGTEMIRGVSGGERKRTSIG 164
Cdd:PRK10419 90 DIQMVFQDSIsaVNPRKTVREII--REPLRHLLSLDKAERLARASEMLRAVDL----DDSVLDKRPPQLSGGQLQRVCLA 163
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 677296704 165 MELITEPPVLFLDEPTTGLDASTANAVLMLLKKLSRRGRT 204
Cdd:PRK10419 164 RALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGT 203
|
|
| PRK10070 |
PRK10070 |
proline/glycine betaine ABC transporter ATP-binding protein ProV; |
45-262 |
3.98e-09 |
|
proline/glycine betaine ABC transporter ATP-binding protein ProV;
Pssm-ID: 182221 [Multi-domain] Cd Length: 400 Bit Score: 58.89 E-value: 3.98e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 45 ILGPTGSGKSSLLDVLAARKHPAglSGEVLIDGIpqppNFKCIS------------GYVVQDDVVMGTMTVRENLHFSAA 112
Cdd:PRK10070 59 IMGLSGSGKSTMVRLLNRLIEPT--RGQVLIDGV----DIAKISdaelrevrrkkiAMVFQSFALMPHMTVLDNTAFGME 132
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 113 LrlpSSISVKEKEDRVTQIISELGLSKVADAKVGTemirgVSGGERKRTSIGMELITEPPVLFLDEPTTGLDASTANAVL 192
Cdd:PRK10070 133 L---AGINAEERREKALDALRQVGLENYAHSYPDE-----LSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQ 204
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 677296704 193 MLLKKL-SRRGRTIIFSIHQPRYSIfKLFDSLTLLALGKVLyhgpakqaleyfsSIGYECEPFNNPADFFL 262
Cdd:PRK10070 205 DELVKLqAKHQRTIVFISHDLDEAM-RIGDRIAIMQNGEVV-------------QVGTPDEILNNPANDYV 261
|
|
| PRK14271 |
PRK14271 |
phosphate ABC transporter ATP-binding protein; Provisional |
28-239 |
4.13e-09 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172759 [Multi-domain] Cd Length: 276 Bit Score: 58.18 E-value: 4.13e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 28 KKILHNV-YGIMKPGLNAILGPTGSGKSSLLDVLAARKHPAG---LSGEVLIDGipqppnfKCISGY--VVQDDVVMGTM 101
Cdd:PRK14271 34 KTVLDQVsMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSgyrYSGDVLLGG-------RSIFNYrdVLEFRRRVGML 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 102 TVRENL-------HFSAALRLPSSISVKEKEDRVTQIISELGLSKVADAKVGTEMIRgVSGGERKRTSIGMELITEPPVL 174
Cdd:PRK14271 107 FQRPNPfpmsimdNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFR-LSGGQQQLLCLARTLAVNPEVL 185
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 677296704 175 FLDEPTTGLDASTANAVLMLLKKLSRRGRTIIFSIHQPRYSifKLFDSLTLLALGKVLYHGPAKQ 239
Cdd:PRK14271 186 LLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAA--RISDRAALFFDGRLVEEGPTEQ 248
|
|
| fbpC |
PRK11432 |
ferric ABC transporter ATP-binding protein; |
45-275 |
5.43e-09 |
|
ferric ABC transporter ATP-binding protein;
Pssm-ID: 183133 [Multi-domain] Cd Length: 351 Bit Score: 58.19 E-value: 5.43e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 45 ILGPTGSGKSSLLDVLAARKHPAglSGEVLIDG-------IPQPPnfKCIsgyVVQDDVVMGTMTVRENLHFsaALRLpS 117
Cdd:PRK11432 37 LLGPSGCGKTTVLRLVAGLEKPT--EGQIFIDGedvthrsIQQRD--ICM---VFQSYALFPHMSLGENVGY--GLKM-L 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 118 SISVKEKEDRVTQIISELGLSKVADAKVGTemirgVSGGERKRTSIGMELITEPPVLFLDEPTTGLDASTANAVLMLLKK 197
Cdd:PRK11432 107 GVPKEERKQRVKEALELVDLAGFEDRYVDQ-----ISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRE 181
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 677296704 198 LSRR-GRTIIFSIHQpRYSIFKLFDSLTLLALGKVLYHGPAKqaleyfssigyecEPFNNPADFFLDIINGDSTSVAAR 275
Cdd:PRK11432 182 LQQQfNITSLYVTHD-QSEAFAVSDTVIVMNKGKIMQIGSPQ-------------ELYRQPASRFMASFMGDANIFPAT 246
|
|
| PRK14246 |
PRK14246 |
phosphate ABC transporter ATP-binding protein; Provisional |
27-246 |
7.55e-09 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172734 [Multi-domain] Cd Length: 257 Bit Score: 56.98 E-value: 7.55e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 27 EKKILHNV-YGIMKPGLNAILGPTGSGKSSLLDVL----AARKHPAGLSGEVL--------IDGIpqppNFKCISGYVVQ 93
Cdd:PRK14246 22 DKAILKDItIKIPNNSIFGIMGPSGSGKSTLLKVLnrliEIYDSKIKVDGKVLyfgkdifqIDAI----KLRKEVGMVFQ 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 94 DDVVMGTMTVRENLHFSAalrlpSSISVKEKEDrVTQIISE----LGLSKVADAKVGTEMIRgVSGGERKRTSIGMELIT 169
Cdd:PRK14246 98 QPNPFPHLSIYDNIAYPL-----KSHGIKEKRE-IKKIVEEclrkVGLWKEVYDRLNSPASQ-LSGGQQQRLTIARALAL 170
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 677296704 170 EPPVLFLDEPTTGLDASTANAVLMLLKKLsRRGRTIIFSIHQPRySIFKLFDSLTLLALGKVLYHGPAKqalEYFSS 246
Cdd:PRK14246 171 KPKVLLMDEPTSMIDIVNSQAIEKLITEL-KNEIAIVIVSHNPQ-QVARVADYVAFLYNGELVEWGSSN---EIFTS 242
|
|
| cbiO |
PRK13631 |
cobalt transporter ATP-binding subunit; Provisional |
152-235 |
9.28e-09 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237451 [Multi-domain] Cd Length: 320 Bit Score: 57.17 E-value: 9.28e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 152 GVSGGERKRTSIGMELITEPPVLFLDEPTTGLDASTANAVLMLLKKLSRRGRTIIFSIHQPRySIFKLFDSLTLLALGKV 231
Cdd:PRK13631 176 GLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTME-HVLEVADEVIVMDKGKI 254
|
....
gi 677296704 232 LYHG 235
Cdd:PRK13631 255 LKTG 258
|
|
| phnK |
PRK11701 |
phosphonate C-P lyase system protein PhnK; Provisional |
44-201 |
9.61e-09 |
|
phosphonate C-P lyase system protein PhnK; Provisional
Pssm-ID: 183280 [Multi-domain] Cd Length: 258 Bit Score: 56.47 E-value: 9.61e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 44 AILGPTGSGKSSLLDVLAARKHPAglSGEVLI---DGipQPPNFKCIS------------GYVVQD-------DVVMGT- 100
Cdd:PRK11701 36 GIVGESGSGKTTLLNALSARLAPD--AGEVHYrmrDG--QLRDLYALSeaerrrllrtewGFVHQHprdglrmQVSAGGn 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 101 -----MTVRENlHF----SAALR-LpssisvkekeDRVtqiisELGLSKVADAKvgtemiRGVSGGERKRTSIGMELITE 170
Cdd:PRK11701 112 igerlMAVGAR-HYgdirATAGDwL----------ERV-----EIDAARIDDLP------TTFSGGMQQRLQIARNLVTH 169
|
170 180 190
....*....|....*....|....*....|.
gi 677296704 171 PPVLFLDEPTTGLDASTANAVLMLLKKLSRR 201
Cdd:PRK11701 170 PRLVFMDEPTGGLDVSVQARLLDLLRGLVRE 200
|
|
| livG |
PRK11300 |
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional |
44-184 |
1.44e-08 |
|
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Pssm-ID: 183080 [Multi-domain] Cd Length: 255 Bit Score: 56.15 E-value: 1.44e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 44 AILGPTGSGKSSLLDVLAARKHPAGlsGEVLIDG--IPQPPNFKCISGYVV---QDDVVMGTMTVRENL----H------ 108
Cdd:PRK11300 35 SLIGPNGAGKTTVFNCLTGFYKPTG--GTILLRGqhIEGLPGHQIARMGVVrtfQHVRLFREMTVIENLlvaqHqqlktg 112
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 677296704 109 -FSAALRLPS-SISVKEKEDRVTQIISELGLSKVADAKVGTemirgVSGGERKRTSIGMELITEPPVLFLDEPTTGLD 184
Cdd:PRK11300 113 lFSGLLKTPAfRRAESEALDRAATWLERVGLLEHANRQAGN-----LAYGQQRRLEIARCMVTQPEILMLDEPAAGLN 185
|
|
| PTZ00243 |
PTZ00243 |
ABC transporter; Provisional |
26-235 |
1.51e-08 |
|
ABC transporter; Provisional
Pssm-ID: 240327 [Multi-domain] Cd Length: 1560 Bit Score: 58.25 E-value: 1.51e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 26 VEKKILHNV-YGIMKPGLNAILGPTGSGKSSLLDVLAARKHPAglSGEVLIDgipqppnfKCISgYVVQDDVVMGTmTVR 104
Cdd:PTZ00243 671 EPKVLLRDVsVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEIS--EGRVWAE--------RSIA-YVPQQAWIMNA-TVR 738
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 105 ENLHF---SAALRLPSSISVKEKEDRVTQIISELglskvaDAKVGtEMIRGVSGGERKRTSIGMELITEPPVLFLDEPTT 181
Cdd:PTZ00243 739 GNILFfdeEDAARLADAVRVSQLEADLAQLGGGL------ETEIG-EKGVNLSGGQKARVSLARAVYANRDVYLLDDPLS 811
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 677296704 182 GLDASTANAVL--MLLKKLsrRGRTIIFSIHQprYSIFKLFDSLTLLALGKVLYHG 235
Cdd:PTZ00243 812 ALDAHVGERVVeeCFLGAL--AGKTRVLATHQ--VHVVPRADYVVALGDGRVEFSG 863
|
|
| YddA |
COG4178 |
ABC-type uncharacterized transport system, permease and ATPase components [General function ... |
45-229 |
2.58e-08 |
|
ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only];
Pssm-ID: 443337 [Multi-domain] Cd Length: 571 Bit Score: 56.74 E-value: 2.58e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 45 ILGPTGSGKSSLLDVLaarkhpAGL----SGEVLI-DG-----IPQPPnfkcisgYVVQDdvvmgtmTVRENLHFSAAlr 114
Cdd:COG4178 394 ITGPSGSGKSTLLRAI------AGLwpygSGRIARpAGarvlfLPQRP-------YLPLG-------TLREALLYPAT-- 451
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 115 lPSSISvkekEDRVTQIISELGLSKVADaKVGTEM--IRGVSGGERKRTSIGMELITEPPVLFLDEPTTGLDASTANAVL 192
Cdd:COG4178 452 -AEAFS----DAELREALEAVGLGHLAE-RLDEEAdwDQVLSLGEQQRLAFARLLLHKPDWLFLDEATSALDEENEAALY 525
|
170 180 190
....*....|....*....|....*....|....*....
gi 677296704 193 MLLKklSRRGRTIIFSI-HQPrySIFKLFDS-LTLLALG 229
Cdd:COG4178 526 QLLR--EELPGTTVISVgHRS--TLAAFHDRvLELTGDG 560
|
|
| cbiO |
PRK13640 |
energy-coupling factor transporter ATPase; |
2-209 |
3.39e-08 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184200 [Multi-domain] Cd Length: 282 Bit Score: 55.19 E-value: 3.39e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 2 SVVSFHNIQYSVKQSsgflckrktvEKKILHNV-YGIMKPGLNAILGPTGSGKSSLLDVLAARKHPAGLSGEVL-IDGIP 79
Cdd:PRK13640 4 NIVEFKHVSFTYPDS----------KKPALNDIsFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKItVDGIT 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 80 -----------------QPPNFKCIsGYVVQDDVVMGTmtvrENlhfsAALRLPSSISVkekedrVTQIISELGLSKVAD 142
Cdd:PRK13640 74 ltaktvwdirekvgivfQNPDNQFV-GATVGDDVAFGL----EN----RAVPRPEMIKI------VRDVLADVGMLDYID 138
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 677296704 143 AKVGTemirgVSGGERKRTSIGMELITEPPVLFLDEPTTGLDASTANAVLMLLKKLSRRGRTIIFSI 209
Cdd:PRK13640 139 SEPAN-----LSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISI 200
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
29-211 |
3.65e-08 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 56.37 E-value: 3.65e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 29 KILHNVYGIMKPG-LNAILGPTGSGKSSLLDVLAArKHPAG-LSGEVLIDGipQPPNFKCIS-----GYVV--QDDVVMG 99
Cdd:TIGR02633 15 KALDGIDLEVRPGeCVGLCGENGAGKSTLMKILSG-VYPHGtWDGEIYWSG--SPLKASNIRdteraGIVIihQELTLVP 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 100 TMTVRENLHFSAALRLPSSI-SVKEKEDRVTQIISELGLSKVADAKVGTEMirgvSGGERKRTSIGMELITEPPVLFLDE 178
Cdd:TIGR02633 92 ELSVAENIFLGNEITLPGGRmAYNAMYLRAKNLLRELQLDADNVTRPVGDY----GGGQQQLVEIAKALNKQARLLILDE 167
|
170 180 190
....*....|....*....|....*....|...
gi 677296704 179 PTTGLDASTANAVLMLLKKLSRRGRTIIFSIHQ 211
Cdd:TIGR02633 168 PSSSLTEKETEILLDIIRDLKAHGVACVYISHK 200
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
46-210 |
5.65e-08 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 55.90 E-value: 5.65e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 46 LGPTGSGKSSLLDVLAarkhpaGL----SGEVLIDGipQPPNFKCIS-----GYVVQDDVVMGTMTVRENLHFSAAL-RL 115
Cdd:NF033858 298 LGSNGCGKSTTMKMLT------GLlpasEGEAWLFG--QPVDAGDIAtrrrvGYMSQAFSLYGELTVRQNLELHARLfHL 369
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 116 PSsisvKEKEDRVTQIISELGLSKVADAKVGtemirGVSGGERKRTSIGMELITEPPVLFLDEPTTGLDASTANAVLMLL 195
Cdd:NF033858 370 PA----AEIAARVAEMLERFDLADVADALPD-----SLPLGIRQRLSLAVAVIHKPELLILDEPTSGVDPVARDMFWRLL 440
|
170
....*....|....*.
gi 677296704 196 KKLSRRGRTIIF-SIH 210
Cdd:NF033858 441 IELSREDGVTIFiSTH 456
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
45-206 |
6.09e-08 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 55.56 E-value: 6.09e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 45 ILGPTGSGKSSLLDVLAARKHPAG--LSGEVLIDGIPQppnfkcisgYVVQDdvvmGTMTVRENLHFSAALRLPSSIsVK 122
Cdd:COG1245 371 IVGPNGIGKTTFAKILAGVLKPDEgeVDEDLKISYKPQ---------YISPD----YDGTVEEFLRSANTDDFGSSY-YK 436
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 123 ekedrvTQIISELGLSKVADAKVgtemiRGVSGGERKRTSIGMELITEPPVLFLDEPTTGLDASTANAVLMLLKKLSR-R 201
Cdd:COG1245 437 ------TEIIKPLGLEKLLDKNV-----KDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRFAEnR 505
|
....*
gi 677296704 202 GRTII 206
Cdd:COG1245 506 GKTAM 510
|
|
| cbiO |
PRK13648 |
cobalt transporter ATP-binding subunit; Provisional |
31-209 |
7.22e-08 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184207 [Multi-domain] Cd Length: 269 Bit Score: 53.99 E-value: 7.22e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 31 LHNV-YGIMKPGLNAILGPTGSGKSSLLDVLAARKHPAglSGEVLIDGIP-QPPNFKCIS---GYVVQ--DDVVMGTmTV 103
Cdd:PRK13648 25 LKDVsFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVK--SGEIFYNNQAiTDDNFEKLRkhiGIVFQnpDNQFVGS-IV 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 104 RenlhFSAALRLPS-SISVKEKEDRVTQIISELGLSKVADAKVgtemiRGVSGGERKRTSIGMELITEPPVLFLDEPTTG 182
Cdd:PRK13648 102 K----YDVAFGLENhAVPYDEMHRRVSEALKQVDMLERADYEP-----NALSGGQKQRVAIAGVLALNPSVIILDEATSM 172
|
170 180
....*....|....*....|....*..
gi 677296704 183 LDASTANAVLMLLKKLSRRGRTIIFSI 209
Cdd:PRK13648 173 LDPDARQNLLDLVRKVKSEHNITIISI 199
|
|
| cbiO |
PRK13632 |
cobalt transporter ATP-binding subunit; Provisional |
44-269 |
8.58e-08 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237452 [Multi-domain] Cd Length: 271 Bit Score: 53.84 E-value: 8.58e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 44 AILGPTGSGKSSLLDVLAARKHPAglSGEVLIDGIP-QPPNFKCIS---GYVVQ--DDVVMGTmTVRENLHFSAALRlps 117
Cdd:PRK13632 39 AILGHNGSGKSTISKILTGLLKPQ--SGEIKIDGITiSKENLKEIRkkiGIIFQnpDNQFIGA-TVEDDIAFGLENK--- 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 118 sisvKEKEDRVTQIISELGlskvadAKVGTEMI-----RGVSGGERKRTSIGMELITEPPVLFLDEPTTGLDASTANAVL 192
Cdd:PRK13632 113 ----KVPPKKMKDIIDDLA------KKVGMEDYldkepQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIK 182
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 677296704 193 MLLKKLSRRGRTIIFSI-HQPRYSIfkLFDSLTLLALGKVLYHGPAKqaleyfssigyecEPFNNPAdfFLDIINGDS 269
Cdd:PRK13632 183 KIMVDLRKTRKKTLISItHDMDEAI--LADKVIVFSEGKLIAQGKPK-------------EILNNKE--ILEKAKIDS 243
|
|
| MK0520 |
COG2401 |
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction ... |
22-212 |
9.34e-08 |
|
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only];
Pssm-ID: 441957 [Multi-domain] Cd Length: 222 Bit Score: 53.04 E-value: 9.34e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 22 KRKTVEKKILHNVYGIMKPG-LNAILGPTGSGKSSLLDVLAARKHPAGLSGEVLIDGIPQPPNfkcisgyvvqddvvmgt 100
Cdd:COG2401 37 ELRVVERYVLRDLNLEIEPGeIVLIVGASGSGKSTLLRLLAGALKGTPVAGCVDVPDNQFGRE----------------- 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 101 MTVRENLhfsaalrlPSSISVKEkedrVTQIISELGLSKVAD--AKVgtemiRGVSGGERKRTSIGMELITEPPVLFLDE 178
Cdd:COG2401 100 ASLIDAI--------GRKGDFKD----AVELLNAVGLSDAVLwlRRF-----KELSTGQKFRFRLALLLAERPKLLVIDE 162
|
170 180 190
....*....|....*....|....*....|....*
gi 677296704 179 PTTGLDASTANAVLMLLKKLSRR-GRTIIFSIHQP 212
Cdd:COG2401 163 FCSHLDRQTAKRVARNLQKLARRaGITLVVATHHY 197
|
|
| PRK13543 |
PRK13543 |
heme ABC exporter ATP-binding protein CcmA; |
47-184 |
9.58e-08 |
|
heme ABC exporter ATP-binding protein CcmA;
Pssm-ID: 184129 [Multi-domain] Cd Length: 214 Bit Score: 52.93 E-value: 9.58e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 47 GPTGSGKSSLLDVLAARKHPAglSGEVLIDGIPQPPNFKC-ISGYVVQDDVVMGTMTVRENLHFSAAL------RLPSSI 119
Cdd:PRK13543 44 GDNGAGKTTLLRVLAGLLHVE--SGQIQIDGKTATRGDRSrFMAYLGHLPGLKADLSTLENLHFLCGLhgrrakQMPGSA 121
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 677296704 120 svkekedrvtqiISELGLSKVADAkvgteMIRGVSGGERKRTSIGMELITEPPVLFLDEPTTGLD 184
Cdd:PRK13543 122 ------------LAIVGLAGYEDT-----LVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLD 169
|
|
| ABCC_MRP_domain2 |
cd03244 |
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C ... |
4-210 |
9.73e-08 |
|
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213211 [Multi-domain] Cd Length: 221 Bit Score: 52.88 E-value: 9.73e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 4 VSFHNiqYSVKQSSGflckrktvEKKILHNVYGIMKPGLN-AILGPTGSGKSSLLDVLAARKHPAglSGEVLIDGIPqpp 82
Cdd:cd03244 3 IEFKN--VSLRYRPN--------LPPVLKNISFSIKPGEKvGIVGRTGSGKSSLLLALFRLVELS--SGSILIDGVD--- 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 83 nfkcISGYVVQD----------DVVMGTMTVRENL----HFSaalrlpssisvkekEDRVTQIISELGLSKVADAKVG-- 146
Cdd:cd03244 68 ----ISKIGLHDlrsrisiipqDPVLFSGTIRSNLdpfgEYS--------------DEELWQALERVGLKEFVESLPGgl 129
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 677296704 147 -TEMIRG---VSGGERKRTSIGMELITEPPVLFLDEPTTGLDASTANAVLMLLKKlSRRGRTIIFSIH 210
Cdd:cd03244 130 dTVVEEGgenLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIRE-AFKDCTVLTIAH 196
|
|
| PRK14239 |
PRK14239 |
phosphate transporter ATP-binding protein; Provisional |
27-197 |
1.22e-07 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184585 [Multi-domain] Cd Length: 252 Bit Score: 53.24 E-value: 1.22e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 27 EKKILHNV-YGIMKPGLNAILGPTGSGKSSLLDVLaarKHPAGLSGEVLIDGipqPPNFKCISGYVVQDDVV-----MGT 100
Cdd:PRK14239 17 KKKALNSVsLDFYPNEITALIGPSGSGKSTLLRSI---NRMNDLNPEVTITG---SIVYNGHNIYSPRTDTVdlrkeIGM 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 101 ---------MTVRENLHFsaALRLPSsisVKEKedrvtQIISELGLSKVADAKVGTEM-------IRGVSGGERKRTSIG 164
Cdd:PRK14239 91 vfqqpnpfpMSIYENVVY--GLRLKG---IKDK-----QVLDEAVEKSLKGASIWDEVkdrlhdsALGLSGGQQQRVCIA 160
|
170 180 190
....*....|....*....|....*....|....*.
gi 677296704 165 MELITEPPVLFLDEPTTGLDASTANAV---LMLLKK 197
Cdd:PRK14239 161 RVLATSPKIILLDEPTSALDPISAGKIeetLLGLKD 196
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
154-207 |
1.23e-07 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 54.69 E-value: 1.23e-07
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*
gi 677296704 154 SGGERKRTSIGMELITEPPVLFLDEPTTGLDASTANAVLMLLKKLSRR-GRTIIF 207
Cdd:COG4172 158 SGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKDLQRElGMALLL 212
|
|
| ABC_RNaseL_inhibitor_domain2 |
cd03237 |
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
45-184 |
1.82e-07 |
|
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213204 [Multi-domain] Cd Length: 246 Bit Score: 52.80 E-value: 1.82e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 45 ILGPTGSGKSSLLDVLAARKHPAGLSGEVLIDGIPQPPNfkcisgYVVQDDvvmgTMTVRENLHfsaalrlpssisvkEK 124
Cdd:cd03237 30 ILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQ------YIKADY----EGTVRDLLS--------------SI 85
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 677296704 125 EDRV-------TQIISELGLSKVADAKVGTemirgVSGGERKRTSIGMELITEPPVLFLDEPTTGLD 184
Cdd:cd03237 86 TKDFythpyfkTEIAKPLQIEQILDREVPE-----LSGGELQRVAIAACLSKDADIYLLDEPSAYLD 147
|
|
| ABC_Class2 |
cd03227 |
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems ... |
33-212 |
2.92e-07 |
|
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Pssm-ID: 213194 [Multi-domain] Cd Length: 162 Bit Score: 50.44 E-value: 2.92e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 33 NVYGIMKPGLNAILGPTGSGKSSLLD---VLAARKHPAGLSGEVLIDGipqppnfkCISGYVvqddvvmgtmtvrenlhf 109
Cdd:cd03227 14 NDVTFGEGSLTIITGPNGSGKSTILDaigLALGGAQSATRRRSGVKAG--------CIVAAV------------------ 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 110 SAALRLpssisvkekedrvtqiiselglskvadakvgteMIRGVSGGERKRTSIGMEL----ITEPPVLFLDEPTTGLDA 185
Cdd:cd03227 68 SAELIF---------------------------------TRLQLSGGEKELSALALILalasLKPRPLYILDEIDRGLDP 114
|
170 180
....*....|....*....|....*..
gi 677296704 186 STANAVLMLLKKLSRRGRTIIFSIHQP 212
Cdd:cd03227 115 RDGQALAEAILEHLVKGAQVIVITHLP 141
|
|
| PRK13633 |
PRK13633 |
energy-coupling factor transporter ATPase; |
44-210 |
3.24e-07 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237453 [Multi-domain] Cd Length: 280 Bit Score: 52.40 E-value: 3.24e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 44 AILGPTGSGKSSLldvlaaRKHPAGL----SGEVLIDGIPQPP-----NFKCISGYVVQ--DDVVMGTMtVRENLHFSaa 112
Cdd:PRK13633 40 VILGRNGSGKSTI------AKHMNALlipsEGKVYVDGLDTSDeenlwDIRNKAGMVFQnpDNQIVATI-VEEDVAFG-- 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 113 lrlPSSISVKEKEDRvtqiiselglSKVADA--KVGTEMIRG-----VSGGERKRTSIGMELITEPPVLFLDEPTTGLDA 185
Cdd:PRK13633 111 ---PENLGIPPEEIR----------ERVDESlkKVGMYEYRRhaphlLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDP 177
|
170 180
....*....|....*....|....*.
gi 677296704 186 STANAVLMLLKKLSRR-GRTIIFSIH 210
Cdd:PRK13633 178 SGRREVVNTIKELNKKyGITIILITH 203
|
|
| PRK11174 |
PRK11174 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
44-211 |
3.39e-07 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236870 [Multi-domain] Cd Length: 588 Bit Score: 53.31 E-value: 3.39e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 44 AILGPTGSGKSSLLDVLAarkhpaGL---SGEVLIDGIP----QPPNF-KCISgYVVQDDVVM-GTmtVRENLHFSAALR 114
Cdd:PRK11174 380 ALVGPSGAGKTSLLNALL------GFlpyQGSLKINGIElrelDPESWrKHLS-WVGQNPQLPhGT--LRDNVLLGNPDA 450
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 115 LPSSISVKEKEDRVTQIISEL--GLskvaDAKVGTEMIrGVSGGERKRTSIGMELITEPPVLFLDEPTTGLDASTANAVL 192
Cdd:PRK11174 451 SDEQLQQALENAWVSEFLPLLpqGL----DTPIGDQAA-GLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVM 525
|
170
....*....|....*....
gi 677296704 193 MLLKKLSrRGRTIIFSIHQ 211
Cdd:PRK11174 526 QALNAAS-RRQTTLMVTHQ 543
|
|
| cbiO |
PRK13645 |
energy-coupling factor transporter ATPase; |
8-247 |
3.43e-07 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184204 [Multi-domain] Cd Length: 289 Bit Score: 52.32 E-value: 3.43e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 8 NIQYSVKQSSGFlckrktvEKKILHNV-YGIMKPGLNAILGPTGSGKSSLLDVlaarkhPAGL----SGEVLIDGIPQPP 82
Cdd:PRK13645 11 NVSYTYAKKTPF-------EFKALNNTsLTFKKNKVTCVIGTTGSGKSTMIQL------TNGLiiseTGQTIVGDYAIPA 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 83 NFKCIS---------GYVVQ-DDVVMGTMTVRENLHFSaalrlPSSISVKEKE--DRVTQIISELGLSKVADAKVGTEMi 150
Cdd:PRK13645 78 NLKKIKevkrlrkeiGLVFQfPEYQLFQETIEKDIAFG-----PVNLGENKQEayKKVPELLKLVQLPEDYVKRSPFEL- 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 151 rgvSGGERKRTSIGMELITEPPVLFLDEPTTGLDASTANAVLMLLKKLSR-RGRTIIFSIHQPRySIFKLFDSLTLLALG 229
Cdd:PRK13645 152 ---SGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKeYKKRIIMVTHNMD-QVLRIADEVIVMHEG 227
|
250
....*....|....*...
gi 677296704 230 KVLYHGpakQALEYFSSI 247
Cdd:PRK13645 228 KVISIG---SPFEIFSNQ 242
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
29-210 |
4.46e-07 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 52.62 E-value: 4.46e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 29 KILHNVYGIMKPG-LNAILGPTGSGKSSLLDVLAArKHPAG-LSGEVLIDGipQPPNFKCIS-----GYVV--QDDVVMG 99
Cdd:PRK13549 19 KALDNVSLKVRAGeIVSLCGENGAGKSTLMKVLSG-VYPHGtYEGEIIFEG--EELQASNIRdteraGIAIihQELALVK 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 100 TMTVRENLHFSAALRLPSSISVKEKEDRVTQIISELGLSKVADAKVGTemirgVSGGERKRTSIGMELITEPPVLFLDEP 179
Cdd:PRK13549 96 ELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGN-----LGLGQQQLVEIAKALNKQARLLILDEP 170
|
170 180 190
....*....|....*....|....*....|.
gi 677296704 180 TTGLDASTANAVLMLLKKLSRRGRTIIFSIH 210
Cdd:PRK13549 171 TASLTESETAVLLDIIRDLKAHGIACIYISH 201
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
45-242 |
4.71e-07 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 52.88 E-value: 4.71e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 45 ILGPTGSGKSSLLDVLAARKHPAglSGEV-------LID----GIPQPPNFKCISGYVVQDDVVMGTMTVRENLHFSAAL 113
Cdd:TIGR03269 315 IVGTSGAGKTTLSKIIAGVLEPT--SGEVnvrvgdeWVDmtkpGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGL 392
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 114 RLPSSISVKekedRVTQIISELGLSKVADAKVGTEMIRGVSGGERKRTSIGMELITEPPVLFLDEPTTGLDASTANAVL- 192
Cdd:TIGR03269 393 ELPDELARM----KAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTh 468
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 677296704 193 MLLKKLSRRGRTIIFSIHQPRYsIFKLFDSLTLLALGKVLYHGPAKQALE 242
Cdd:TIGR03269 469 SILKAREEMEQTFIIVSHDMDF-VLDVCDRAALMRDGKIVKIGDPEEIVE 517
|
|
| ABCC_SUR1_N |
cd03290 |
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The ... |
42-214 |
6.65e-07 |
|
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Pssm-ID: 213257 [Multi-domain] Cd Length: 218 Bit Score: 50.41 E-value: 6.65e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 42 LNAILGPTGSGKSSLLdvLAARKHPAGLSGEVLIDG-IPQPPNFKCIS-------GYVVQDDVVMGTmTVRENLHFSAAL 113
Cdd:cd03290 29 LTMIVGQVGCGKSSLL--LAILGEMQTLEGKVHWSNkNESEPSFEATRsrnrysvAYAAQKPWLLNA-TVEENITFGSPF 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 114 RlpssisvKEKEDRVTQIIS---ELGLSKVAD-AKVGTEMIrGVSGGERKRTSIGMELITEPPVLFLDEPTTGLDASTAN 189
Cdd:cd03290 106 N-------KQRYKAVTDACSlqpDIDLLPFGDqTEIGERGI-NLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSD 177
|
170 180
....*....|....*....|....*..
gi 677296704 190 AVLM--LLKKLSRRGRTIIFSIHQPRY 214
Cdd:cd03290 178 HLMQegILKFLQDDKRTLVLVTHKLQY 204
|
|
| sufC |
PRK09580 |
cysteine desulfurase ATPase component; Reviewed |
27-235 |
6.83e-07 |
|
cysteine desulfurase ATPase component; Reviewed
Pssm-ID: 181965 [Multi-domain] Cd Length: 248 Bit Score: 50.95 E-value: 6.83e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 27 EKKILHNVYGIMKPG-LNAILGPTGSGKSSLLDVLAARKHPAGLSGEVLIDG---IPQPPNFKCISGYVVQDDVVMGTMT 102
Cdd:PRK09580 13 DKAILRGLNLEVRPGeVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGkdlLELSPEDRAGEGIFMAFQYPVEIPG 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 103 VRENLHFSAALRLPSSISVKEKEDR--VTQIISE-LGLSKVADAKVGTEMIRGVSGGERKRTSIGMELITEPPVLFLDEP 179
Cdd:PRK09580 93 VSNQFFLQTALNAVRSYRGQEPLDRfdFQDLMEEkIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDES 172
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 677296704 180 TTGLDASTANAVLMLLKKLSRRGRTIIFSIHQPRYSIFKLFDSLTLLALGKVLYHG 235
Cdd:PRK09580 173 DSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSG 228
|
|
| PRK14258 |
PRK14258 |
phosphate ABC transporter ATP-binding protein; Provisional |
28-259 |
7.05e-07 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184593 [Multi-domain] Cd Length: 261 Bit Score: 51.19 E-value: 7.05e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 28 KKILHNV-YGIMKPGLNAILGPTGSGKSSLLDVLAARKHpagLSGEVLIDG-------------------------IPQP 81
Cdd:PRK14258 20 QKILEGVsMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNE---LESEVRVEGrveffnqniyerrvnlnrlrrqvsmVHPK 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 82 PNFKCISGYvvqDDVVMGTMTV--RENLHFSAALRlpSSISVKEKEDRVTQIISELGLSkvadakvgtemirgVSGGERK 159
Cdd:PRK14258 97 PNLFPMSVY---DNVAYGVKIVgwRPKLEIDDIVE--SALKDADLWDEIKHKIHKSALD--------------LSGGQQQ 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 160 RTSIGMELITEPPVLFLDEPTTGLDASTANAVLMLLKKLSRRGRTIIFSIHQPRYSIFKLFDSltllalgKVLYHGPAK- 238
Cdd:PRK14258 158 RLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDF-------TAFFKGNENr 230
|
250 260
....*....|....*....|...
gi 677296704 239 --QALEYfssiGYECEPFNNPAD 259
Cdd:PRK14258 231 igQLVEF----GLTKKIFNSPHD 249
|
|
| ABCD_peroxisomal_ALDP |
cd03223 |
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding ... |
45-221 |
8.02e-07 |
|
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic).
Pssm-ID: 213190 [Multi-domain] Cd Length: 166 Bit Score: 49.46 E-value: 8.02e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 45 ILGPTGSGKSSLLDVLAarkhpaGL----SGEVLIDG------IPQPPnfkcisgYvvqddvvMGTMTVREnlhfsaALR 114
Cdd:cd03223 32 ITGPSGTGKSSLFRALA------GLwpwgSGRIGMPEgedllfLPQRP-------Y-------LPLGTLRE------QLI 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 115 LPSsisvkekeDRVtqiiselglskvadakvgtemirgVSGGERKRTSIGMELITEPPVLFLDEPTTGLDASTANAVLML 194
Cdd:cd03223 86 YPW--------DDV------------------------LSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQL 133
|
170 180
....*....|....*....|....*...
gi 677296704 195 LKKLSrrgrTIIFSI-HQPrySIFKLFD 221
Cdd:cd03223 134 LKELG----ITVISVgHRP--SLWKFHD 155
|
|
| cbiO |
PRK13635 |
energy-coupling factor ABC transporter ATP-binding protein; |
44-209 |
8.98e-07 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184195 [Multi-domain] Cd Length: 279 Bit Score: 50.78 E-value: 8.98e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 44 AILGPTGSGKSSLLDVLAARKHPAglSGEVLIDGIP-----------------QPPNFKCIsGYVVQDDVVMGTmtvrEN 106
Cdd:PRK13635 37 AIVGHNGSGKSTLAKLLNGLLLPE--AGTITVGGMVlseetvwdvrrqvgmvfQNPDNQFV-GATVQDDVAFGL----EN 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 107 lhfsaalrlpSSISVKEKEDRVTQIISELGLSKVADakvgTEMIRgVSGGERKRTSIGMELITEPPVLFLDEPTTGLDAS 186
Cdd:PRK13635 110 ----------IGVPREEMVERVDQALRQVGMEDFLN----REPHR-LSGGQKQRVAIAGVLALQPDIIILDEATSMLDPR 174
|
170 180
....*....|....*....|...
gi 677296704 187 TANAVLMLLKKLSRRGRTIIFSI 209
Cdd:PRK13635 175 GRREVLETVRQLKEQKGITVLSI 197
|
|
| PRK10790 |
PRK10790 |
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein; |
27-242 |
1.00e-06 |
|
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein;
Pssm-ID: 182733 [Multi-domain] Cd Length: 592 Bit Score: 51.64 E-value: 1.00e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 27 EKKILHNV-YGIMKPGLNAILGPTGSGKSSLLDVLAARKHPAglSGEVLIDGIPqppnFKCIS--------GYVVQDDVV 97
Cdd:PRK10790 353 DNLVLQNInLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLT--EGEIRLDGRP----LSSLShsvlrqgvAMVQQDPVV 426
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 98 MGTMtvrenlhFSAALRLPSSISvkekEDRVTQIISELGLSKVADA-------KVGtEMIRGVSGGERKRTSIGMELITE 170
Cdd:PRK10790 427 LADT-------FLANVTLGRDIS----EEQVWQALETVQLAELARSlpdglytPLG-EQGNNLSVGQKQLLALARVLVQT 494
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 677296704 171 PPVLFLDEPTTGLDASTANAVLMLLKKLsRRGRTIIFSIHqpRYSIFKLFDSLTLLALGKVLYHGPAKQALE 242
Cdd:PRK10790 495 PQILILDEATANIDSGTEQAIQQALAAV-REHTTLVVIAH--RLSTIVEADTILVLHRGQAVEQGTHQQLLA 563
|
|
| oppD |
PRK09473 |
oligopeptide transporter ATP-binding component; Provisional |
154-209 |
1.07e-06 |
|
oligopeptide transporter ATP-binding component; Provisional
Pssm-ID: 181888 [Multi-domain] Cd Length: 330 Bit Score: 50.88 E-value: 1.07e-06
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*.
gi 677296704 154 SGGERKRTSIGMELITEPPVLFLDEPTTGLDASTANAVLMLLKKLSRRGRTIIFSI 209
Cdd:PRK09473 163 SGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMI 218
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
31-242 |
1.16e-06 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 51.87 E-value: 1.16e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 31 LHNV-YGIMKPGLNAILGPTGSGKSSLLDVLAARKHPagLSGEVLIDG----IPQPPnfkcisgyVVQDDvvmgtmTVRE 105
Cdd:TIGR00957 654 LNGItFSIPEGALVAVVGQVGCGKSSLLSALLAEMDK--VEGHVHMKGsvayVPQQA--------WIQND------SLRE 717
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 106 NLHFSAALRLPSSISVKEkedrVTQIISELGLSKVAD-AKVGTEMIrGVSGGERKRTSIGMELITEPPVLFLDEPTTGLD 184
Cdd:TIGR00957 718 NILFGKALNEKYYQQVLE----ACALLPDLEILPSGDrTEIGEKGV-NLSGGQKQRVSLARAVYSNADIYLFDDPLSAVD 792
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 185 ASTANAVL--MLLKKLSRRGRTIIFSIHQPRYsiFKLFDSLTLLALGKVLYHGPAKQALE 242
Cdd:TIGR00957 793 AHVGKHIFehVIGPEGVLKNKTRILVTHGISY--LPQVDVIIVMSGGKISEMGSYQELLQ 850
|
|
| znuC |
PRK09544 |
high-affinity zinc transporter ATPase; Reviewed |
27-200 |
1.95e-06 |
|
high-affinity zinc transporter ATPase; Reviewed
Pssm-ID: 181939 [Multi-domain] Cd Length: 251 Bit Score: 49.73 E-value: 1.95e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 27 EKKILHNVYGIMKPG-LNAILGPTGSGKSSLLDVLAARKHPAglSGEvlidgIPQPPNFKCisGYVVQddvvmgtmtvre 105
Cdd:PRK09544 16 QRRVLSDVSLELKPGkILTLLGPNGAGKSTLVRVVLGLVAPD--EGV-----IKRNGKLRI--GYVPQ------------ 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 106 NLHFSAALRLPSSISVKEKED-RVTQIISelGLSKVADAKVGTEMIRGVSGGERKRTSIGMELITEPPVLFLDEPTTGLD 184
Cdd:PRK09544 75 KLYLDTTLPLTVNRFLRLRPGtKKEDILP--ALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVD 152
|
170
....*....|....*.
gi 677296704 185 ASTANAVLMLLKKLSR 200
Cdd:PRK09544 153 VNGQVALYDLIDQLRR 168
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
34-207 |
3.62e-06 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 49.91 E-value: 3.62e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 34 VYGIMKPGLNA----------ILG---PTGSGKSSLLDVL--AARKHpaglSGEVLIDGIPQPPN--FKCISGYVV---- 92
Cdd:PRK11288 260 LDGLKGPGLREpisfsvrageIVGlfgLVGAGRSELMKLLygATRRT----AGQVYLDGKPIDIRspRDAIRAGIMlcpe 335
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 93 ---QDDVVmGTMTVRENLHFSA---ALRLPSSISVKEKEDRVTQIISELGLsKVADAKvgtEMIRGVSGGERKRTSIGME 166
Cdd:PRK11288 336 drkAEGII-PVHSVADNINISArrhHLRAGCLINNRWEAENADRFIRSLNI-KTPSRE---QLIMNLSGGNQQKAILGRW 410
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 677296704 167 LITEPPVLFLDEPTTGLDASTANAVLMLLKKLSRRGRTIIF 207
Cdd:PRK11288 411 LSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLF 451
|
|
| dppF |
PRK11308 |
dipeptide transporter ATP-binding subunit; Provisional |
11-200 |
3.70e-06 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 236898 [Multi-domain] Cd Length: 327 Bit Score: 49.19 E-value: 3.70e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 11 YSVKQssGFLCKRKTVekKILHNVYGIMKPGLN-AILGPTGSGKSSLLDVLAARKHPAglSGEVLIDGipqppnfkcisg 89
Cdd:PRK11308 15 YPVKR--GLFKPERLV--KALDGVSFTLERGKTlAVVGESGCGKSTLARLLTMIETPT--GGELYYQG------------ 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 90 yvvQDDVVMGTMTVR----------ENLHFS------------AALRLPSSISVKEKEDRVTQIISELGLsKVADAKVGT 147
Cdd:PRK11308 77 ---QDLLKADPEAQKllrqkiqivfQNPYGSlnprkkvgqileEPLLINTSLSAAERREKALAMMAKVGL-RPEHYDRYP 152
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 677296704 148 EMIrgvSGGERKRTSIGMELITEPPVLFLDEPTTGLDASTANAVLMLLKKLSR 200
Cdd:PRK11308 153 HMF---SGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQ 202
|
|
| ssuB |
PRK11247 |
aliphatic sulfonates transport ATP-binding subunit; Provisional |
44-187 |
3.89e-06 |
|
aliphatic sulfonates transport ATP-binding subunit; Provisional
Pssm-ID: 183055 [Multi-domain] Cd Length: 257 Bit Score: 48.52 E-value: 3.89e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 44 AILGPTGSGKSSLLDVLAARKHPAGlsGEVLIDGIPQPPnfkcisgyvVQDDVvmgtmtvreNLHFSAALRLP------- 116
Cdd:PRK11247 42 AVVGRSGCGKSTLLRLLAGLETPSA--GELLAGTAPLAE---------AREDT---------RLMFQDARLLPwkkvidn 101
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 677296704 117 SSISVKEK-EDRVTQIISELGLSKVAdakvgTEMIRGVSGGERKRTSIGMELITEPPVLFLDEPTTGLDAST 187
Cdd:PRK11247 102 VGLGLKGQwRDAALQALAAVGLADRA-----NEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALT 168
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
42-235 |
4.10e-06 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 50.36 E-value: 4.10e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 42 LNAILGPTGSGKSSLLDVLAARKHPAGLSGEVLIDGIPQPPNFKCISgyvvqddvvmgTMTVRENLHFSAalrlpssisv 121
Cdd:PLN03232 645 LVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQVSWIF-----------NATVRENILFGS---------- 703
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 122 KEKEDRVTQIISELGLSKVADAKVGTEMI----RGV--SGGERKRTSIGMELITEPPVLFLDEPTTGLDASTANAVLMLL 195
Cdd:PLN03232 704 DFESERYWRAIDVTALQHDLDLLPGRDLTeigeRGVniSGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSC 783
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 677296704 196 KKLSRRGRTIIFSIHQPRYsiFKLFDSLTLLALGKVLYHG 235
Cdd:PLN03232 784 MKDELKGKTRVLVTNQLHF--LPLMDRIILVSEGMIKEEG 821
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
45-210 |
4.69e-06 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 49.56 E-value: 4.69e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 45 ILGPTGSGKSSLLDVLAarkhpaglsGEVLIDG-------------IPQ-PPnfKCISGYVVqDDVVMGTMTVRENLH-F 109
Cdd:PRK11147 34 LVGRNGAGKSTLMKILN---------GEVLLDDgriiyeqdlivarLQQdPP--RNVEGTVY-DFVAEGIEEQAEYLKrY 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 110 SAALRL----PSSISVKEK---------------EDRVTQIISELGLSkvADAKVgTEMirgvSGGERKRTSIGMELITE 170
Cdd:PRK11147 102 HDISHLvetdPSEKNLNELaklqeqldhhnlwqlENRINEVLAQLGLD--PDAAL-SSL----SGGWLRKAALGRALVSN 174
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 677296704 171 PPVLFLDEPTTGLDASTANAVLMLLKklSRRGrTIIFSIH 210
Cdd:PRK11147 175 PDVLLLDEPTNHLDIETIEWLEGFLK--TFQG-SIIFISH 211
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
45-206 |
5.06e-06 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 49.23 E-value: 5.06e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 45 ILGPTG---SGKSSLLDVL--AARKHpaglSGEVLIDG---IPQPPNFKCISGYVV------QDDVVMGtMTVRENLHFS 110
Cdd:PRK10762 280 ILGVSGlmgAGRTELMKVLygALPRT----SGYVTLDGhevVTRSPQDGLANGIVYisedrkRDGLVLG-MSVKENMSLT 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 111 AaLRLPSSISVKEKEDRVTQIISE-LGLSKV----ADAKVGTemirgVSGGERKRTSIGMELITEPPVLFLDEPTTGLDA 185
Cdd:PRK10762 355 A-LRYFSRAGGSLKHADEQQAVSDfIRLFNIktpsMEQAIGL-----LSGGNQQKVAIARGLMTRPKVLILDEPTRGVDV 428
|
170 180
....*....|....*....|.
gi 677296704 186 STANAVLMLLKKLSRRGRTII 206
Cdd:PRK10762 429 GAKKEIYQLINQFKAEGLSII 449
|
|
| CFTR_protein |
TIGR01271 |
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis ... |
30-256 |
6.09e-06 |
|
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. [Transport and binding proteins, Anions]
Pssm-ID: 273530 [Multi-domain] Cd Length: 1490 Bit Score: 49.52 E-value: 6.09e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 30 ILHNV-YGIMKPGLNAILGPTGSGKSSLLDVLAARKHPAglSGEVLIDG-IPQPPNFKCISGYVVQDDVVMGtMTVRENL 107
Cdd:TIGR01271 441 VLKNIsFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPS--EGKIKHSGrISFSPQTSWIMPGTIKDNIIFG-LSYDEYR 517
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 108 HFSA--ALRLPSSISVKEKEDRVtqIISELGLSkvadakvgtemirgVSGGERKRTSIGMELITEPPVLFLDEPTTGLDA 185
Cdd:TIGR01271 518 YTSVikACQLEEDIALFPEKDKT--VLGEGGIT--------------LSGGQRARISLARAVYKDADLYLLDSPFTHLDV 581
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 677296704 186 STANAVL--MLLKKLSRRGRTIIFSihqpRYSIFKLFDSLTLLALGKVLYHGPAK--QALEY-FSSIGYECEPFNN 256
Cdd:TIGR01271 582 VTEKEIFesCLCKLMSNKTRILVTS----KLEHLKKADKILLLHEGVCYFYGTFSelQAKRPdFSSLLLGLEAFDN 653
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
45-184 |
6.83e-06 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 49.04 E-value: 6.83e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 45 ILGPTGSGKSSLLDVLAARKHPAglSGEVLIDGI----PQppnfkcisgYVVQDDvvmgTMTVRENLhFSAALRLPSSIs 120
Cdd:PRK13409 370 IVGPNGIGKTTFAKLLAGVLKPD--EGEVDPELKisykPQ---------YIKPDY----DGTVEDLL-RSITDDLGSSY- 432
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 677296704 121 VKekedrvTQIISELGLSKVADAKVGTemirgVSGGERKRTSIGMELITEPPVLFLDEPTTGLD 184
Cdd:PRK13409 433 YK------SEIIKPLQLERLLDKNVKD-----LSGGELQRVAIAACLSRDADLYLLDEPSAHLD 485
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
45-206 |
9.38e-06 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 48.67 E-value: 9.38e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 45 ILGPTGSGKSSLLDVLAArKHPAGLSGEVLIDGIP---QPPNFKCISGYVV-----QDDVVMGTMTVRENLHFSAaLRLP 116
Cdd:TIGR02633 291 VAGLVGAGRTELVQALFG-AYPGKFEGNVFINGKPvdiRNPAQAIRAGIAMvpedrKRHGIVPILGVGKNITLSV-LKSF 368
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 117 SSISVKEKEDRVTQIISELGLSKVADAKVGTEmIRGVSGGERKRTSIGMELITEPPVLFLDEPTTGLDASTANAVLMLLK 196
Cdd:TIGR02633 369 CFKMRIDAAAELQIIGSAIQRLKVKTASPFLP-IGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLIN 447
|
170
....*....|
gi 677296704 197 KLSRRGRTII 206
Cdd:TIGR02633 448 QLAQEGVAII 457
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
44-201 |
9.64e-06 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 48.97 E-value: 9.64e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 44 AILGPTGSGKSSLLDVLA-ARKHPAGlSGEVL----------------IDGIPQ-------Ppnfkcisgyvvqddvvmg 99
Cdd:NF033858 31 GLIGPDGVGKSSLLSLIAgARKIQQG-RVEVLggdmadarhrravcprIAYMPQglgknlyP------------------ 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 100 TMTVRENLHFSAALRlpsSISVKEKEDRvtqiISEL----GLSKVADAKVGTemirgVSGGERKRTSIGMELITEPPVLF 175
Cdd:NF033858 92 TLSVFENLDFFGRLF---GQDAAERRRR----IDELlratGLAPFADRPAGK-----LSGGMKQKLGLCCALIHDPDLLI 159
|
170 180
....*....|....*....|....*.
gi 677296704 176 LDEPTTGLDAstanavlmllkkLSRR 201
Cdd:NF033858 160 LDEPTTGVDP------------LSRR 173
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
29-230 |
1.03e-05 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 48.57 E-value: 1.03e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 29 KILHNVYGIMKPG-LNAILGPTGSGKSSLLDVLAARKHPAglSGEVLIDGipQPPNFKCiSGYVVQDDVVM--------G 99
Cdd:PRK10982 12 KALDNVNLKVRPHsIHALMGENGAGKSTLLKCLFGIYQKD--SGSILFQG--KEIDFKS-SKEALENGISMvhqelnlvL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 100 TMTVRENLHFSaalRLPSS---ISVKEKEDRVTQIISELGLSKVADAKVGTemirgVSGGERKRTSIGMELITEPPVLFL 176
Cdd:PRK10982 87 QRSVMDNMWLG---RYPTKgmfVDQDKMYRDTKAIFDELDIDIDPRAKVAT-----LSVSQMQMIEIAKAFSYNAKIVIM 158
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 677296704 177 DEPTTGLDASTANAVLMLLKKLSRRGRTIIFSIHQPRySIFKLFDSLTLLALGK 230
Cdd:PRK10982 159 DEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKME-EIFQLCDEITILRDGQ 211
|
|
| ABCF_EF-3 |
cd03221 |
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is ... |
27-210 |
1.21e-05 |
|
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Pssm-ID: 213188 [Multi-domain] Cd Length: 144 Bit Score: 45.52 E-value: 1.21e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 27 EKKILHNVYGIMKPGLN-AILGPTGSGKSSLLDVLAARKHPAglSGEVLIDGipqppnfKCISGYVVQddvvmgtmtvre 105
Cdd:cd03221 12 GKLLLKDISLTINPGDRiGLVGRNGAGKSTLLKLIAGELEPD--EGIVTWGS-------TVKIGYFEQ------------ 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 106 nlhfsaalrlpssisvkekedrvtqiiselglskvadakvgtemirgVSGGERKRTSIGMELITEPPVLFLDEPTTGLDA 185
Cdd:cd03221 71 -----------------------------------------------LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDL 103
|
170 180
....*....|....*....|....*
gi 677296704 186 STANAVLMLLKKLSrrgRTIIFSIH 210
Cdd:cd03221 104 ESIEALEEALKEYP---GTVILVSH 125
|
|
| cbiO |
PRK13650 |
energy-coupling factor transporter ATPase; |
44-184 |
1.74e-05 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184209 [Multi-domain] Cd Length: 279 Bit Score: 47.03 E-value: 1.74e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 44 AILGPTGSGKSS---LLD-VLAARkhpaglSGEVLIDG-----------------IPQPPNFKCIsGYVVQDDVVMGTmt 102
Cdd:PRK13650 37 SIIGHNGSGKSTtvrLIDgLLEAE------SGQIIIDGdllteenvwdirhkigmVFQNPDNQFV-GATVEDDVAFGL-- 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 103 vrENlhfsaalrlpSSISVKEKEDRVTQIISELGLSKVADakvgTEMIRgVSGGERKRTSIGMELITEPPVLFLDEPTTG 182
Cdd:PRK13650 108 --EN----------KGIPHEEMKERVNEALELVGMQDFKE----REPAR-LSGGQKQRVAIAGAVAMRPKIIILDEATSM 170
|
..
gi 677296704 183 LD 184
Cdd:PRK13650 171 LD 172
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
149-206 |
1.77e-05 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 47.80 E-value: 1.77e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*...
gi 677296704 149 MIRGVSGGERKRTSIGMELITEPPVLFLDEPTTGLDASTANAVLMLLKKLSRRGRTII 206
Cdd:PRK10982 388 QIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGII 445
|
|
| PLN03130 |
PLN03130 |
ABC transporter C family member; Provisional |
25-211 |
1.79e-05 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 48.20 E-value: 1.79e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 25 TVEKKILHNVYGIMKPG-LNAILGPTGSGKSSLLDVLAArKHPAGLSGEVLIDGIpqppnfkciSGYVVQDDVVMGTmTV 103
Cdd:PLN03130 627 KAERPTLSNINLDVPVGsLVAIVGSTGEGKTSLISAMLG-ELPPRSDASVVIRGT---------VAYVPQVSWIFNA-TV 695
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 104 RENLHFSAalrlPSSISVKEKEDRVTQIISELGLSKVADAkvgTEM-IRGV--SGGERKRTSIGMELITEPPVLFLDEPT 180
Cdd:PLN03130 696 RDNILFGS----PFDPERYERAIDVTALQHDLDLLPGGDL---TEIgERGVniSGGQKQRVSMARAVYSNSDVYIFDDPL 768
|
170 180 190
....*....|....*....|....*....|.
gi 677296704 181 TGLDASTANAVLMLLKKLSRRGRTIIFSIHQ 211
Cdd:PLN03130 769 SALDAHVGRQVFDKCIKDELRGKTRVLVTNQ 799
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
153-210 |
2.02e-05 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 47.54 E-value: 2.02e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 677296704 153 VSGGERKRTSIGMELITEPPVLFLDEPTTGLDASTANAVLMLLKKLSRR-GRTIIFSIH 210
Cdd:PRK10261 169 LSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEmSMGVIFITH 227
|
|
| PRK15079 |
PRK15079 |
oligopeptide ABC transporter ATP-binding protein OppF; Provisional |
154-210 |
2.19e-05 |
|
oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Pssm-ID: 185037 [Multi-domain] Cd Length: 331 Bit Score: 47.01 E-value: 2.19e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*...
gi 677296704 154 SGGERKRTSIGMELITEPPVLFLDEPTTGLDASTANAVLMLLKKLSRR-GRTIIFSIH 210
Cdd:PRK15079 163 SGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREmGLSLIFIAH 220
|
|
| ABC_UvrA |
cd03238 |
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in ... |
103-213 |
2.72e-05 |
|
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213205 [Multi-domain] Cd Length: 176 Bit Score: 45.01 E-value: 2.72e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 103 VRENLHFSAALRLPSSISVKEKEDRVT----QIISELGLSKVA-DAKVGTemirgVSGGERKRTSIGMELITEP-PVLF- 175
Cdd:cd03238 38 VNEGLYASGKARLISFLPKFSRNKLIFidqlQFLIDVGLGYLTlGQKLST-----LSGGELQRVKLASELFSEPpGTLFi 112
|
90 100 110
....*....|....*....|....*....|....*...
gi 677296704 176 LDEPTTGLDASTANAVLMLLKKLSRRGRTIIFSIHQPR 213
Cdd:cd03238 113 LDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLD 150
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
70-211 |
2.78e-05 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 47.33 E-value: 2.78e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 70 SGEVLIDGIPQPP-NFKCISGY--VVQDDVVMGTMTVRENLHFSaalrlpSSISVKEKEDRVTQI--ISEL--GLSKVAD 142
Cdd:PTZ00265 1276 SGKILLDGVDICDyNLKDLRNLfsIVSQEPMLFNMSIYENIKFG------KEDATREDVKRACKFaaIDEFieSLPNKYD 1349
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 143 AKVGTEMiRGVSGGERKRTSIGMELITEPPVLFLDEPTTGLDASTANAVLMLLKKLSRRG-RTIIFSIHQ 211
Cdd:PTZ00265 1350 TNVGPYG-KSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKAdKTIITIAHR 1418
|
|
| ABC_Rad50 |
cd03240 |
ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ... |
40-213 |
2.98e-05 |
|
ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Pssm-ID: 213207 [Multi-domain] Cd Length: 204 Bit Score: 45.29 E-value: 2.98e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 40 PGLNAILGPTGSGKSSLLDVLAArkhpaGLSGEvlidgipQPPNFKciSGYVVQDDVVMGTMTVRENLHFSAAlrlpssi 119
Cdd:cd03240 22 SPLTLIVGQNGAGKTTIIEALKY-----ALTGE-------LPPNSK--GGAHDPKLIREGEVRAQVKLAFENA------- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 120 svkekEDRVTQIISELG-LSKVADAKVG------TEMIRGVSGGERK------RTSIGMELITEPPVLFLDEPTTGLDA- 185
Cdd:cd03240 81 -----NGKKYTITRSLAiLENVIFCHQGesnwplLDMRGRCSGGEKVlasliiRLALAETFGSNCGILALDEPTTNLDEe 155
|
170 180
....*....|....*....|....*....
gi 677296704 186 STANAVLMLLKKLSR-RGRTIIFSIHQPR 213
Cdd:cd03240 156 NIEESLAEIIEERKSqKNFQLIVITHDEE 184
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
50-207 |
3.29e-05 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 46.94 E-value: 3.29e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 50 GSGKSSLLDVLAARKHPAglSGEVLIDGIPqppnfkcIS------------GYVVQD---DVVMGTMTVRENL----HFS 110
Cdd:COG3845 294 GNGQSELAEALAGLRPPA--SGSIRLDGED-------ITglsprerrrlgvAYIPEDrlgRGLVPDMSVAENLilgrYRR 364
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 111 AALRLPSSISVKEKEDRVTQIISELGLsKVADAKVgteMIRGVSGGERKRTSIGMELITEPPVLFLDEPTTGLDASTANA 190
Cdd:COG3845 365 PPFSRGGFLDRKAIRAFAEELIEEFDV-RTPGPDT---PARSLSGGNQQKVILARELSRDPKLLIAAQPTRGLDVGAIEF 440
|
170
....*....|....*..
gi 677296704 191 VLMLLKKLSRRGRTIIF 207
Cdd:COG3845 441 IHQRLLELRDAGAAVLL 457
|
|
| AppF |
COG4608 |
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]; ... |
44-207 |
4.08e-05 |
|
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443658 [Multi-domain] Cd Length: 329 Bit Score: 45.88 E-value: 4.08e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 44 AILGPTGSGKSSLLDVLAARKHPAglSGEVLIDGIPqppnfkcISG--------------YVVQDDvvMGT----MTVRE 105
Cdd:COG4608 48 GLVGESGCGKSTLGRLLLRLEEPT--SGEILFDGQD-------ITGlsgrelrplrrrmqMVFQDP--YASlnprMTVGD 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 106 NLhfSAALRLPSSISVKEKEDRVTQIISELGLSkvadakvgTEMIR----GVSGGERKRTSIGMELITEPPVLFLDEPTT 181
Cdd:COG4608 117 II--AEPLRIHGLASKAERRERVAELLELVGLR--------PEHADryphEFSGGQRQRIGIARALALNPKLIVCDEPVS 186
|
170 180
....*....|....*....|....*..
gi 677296704 182 GLDASTANAVLMLLKKLSRR-GRTIIF 207
Cdd:COG4608 187 ALDVSIQAQVLNLLEDLQDElGLTYLF 213
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
47-206 |
4.63e-05 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 46.32 E-value: 4.63e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 47 GPTGSGKSSLLDVLAARKHPAglSGEVLIDGIPQPPNFKCIS-----GYVVQ---DDVVMGTMTVRENLHFSAALRLPS- 117
Cdd:PRK09700 296 GLVGSGRTELMNCLFGVDKRA--GGEIRLNGKDISPRSPLDAvkkgmAYITEsrrDNGFFPNFSIAQNMAISRSLKDGGy 373
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 118 ----SISVKEKEDRVTQIISELGLSKVADAKvgtEMIRGVSGGERKRTSIGMELITEPPVLFLDEPTTGLDASTANAVLM 193
Cdd:PRK09700 374 kgamGLFHEVDEQRTAENQRELLALKCHSVN---QNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYK 450
|
170
....*....|...
gi 677296704 194 LLKKLSRRGRTII 206
Cdd:PRK09700 451 VMRQLADDGKVIL 463
|
|
| ABC2_membrane_3 |
pfam12698 |
ABC-2 family transporter protein; This family is related to the ABC-2 membrane transporter ... |
425-612 |
6.06e-05 |
|
ABC-2 family transporter protein; This family is related to the ABC-2 membrane transporter family pfam01061.
Pssm-ID: 463674 [Multi-domain] Cd Length: 345 Bit Score: 45.46 E-value: 6.06e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 425 QYTSGYyRVSAYFLALMIGDLLPmrtapAIIFSCISYWMIGYQAVT-GRFFFFMLTLVMVSYTATAMSLAISAGMDVVAV 503
Cdd:pfam12698 195 LLVSGV-SPLQYWLGKILGDFLV-----GLLQLLIILLLLFGIGIPfGNLGLLLLLFLLYGLAYIALGYLLGSLFKNSED 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 504 ANLLITICFVLMLIFSGLLVNLPSIMGWLNWLQYFsIPrygltvsscppdisgeilapysNTNICLMFFCRCSGEAYlcs 583
Cdd:pfam12698 269 AQSIIGIVILLLSGFFGGLFPLEDPPSFLQWIFSI-IP----------------------FFSPIDGLLRLIYGDSL--- 322
|
170 180
....*....|....*....|....*....
gi 677296704 584 qgitpttWAMWENIVALFCMTVIFLIIAY 612
Cdd:pfam12698 323 -------WEIAPSLIILLLFAVVLLLLAL 344
|
|
| PRK10636 |
PRK10636 |
putative ABC transporter ATP-binding protein; Provisional |
27-184 |
9.90e-05 |
|
putative ABC transporter ATP-binding protein; Provisional
Pssm-ID: 236729 [Multi-domain] Cd Length: 638 Bit Score: 45.55 E-value: 9.90e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 27 EKKILHNVYGIMKPGLN-AILGPTGSGKSSLLDVLAARKHPagLSGEV-LIDGIPQppnfkcisGYVVQddvvmgtmtvr 104
Cdd:PRK10636 324 DRIILDSIKLNLVPGSRiGLLGRNGAGKSTLIKLLAGELAP--VSGEIgLAKGIKL--------GYFAQ----------- 382
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 105 ENLHFSAALRLP----SSISVKEKEDRVTQIISELGLS--KVadakvgTEMIRGVSGGERKRTSIGMELITEPPVLFLDE 178
Cdd:PRK10636 383 HQLEFLRADESPlqhlARLAPQELEQKLRDYLGGFGFQgdKV------TEETRRFSGGEKARLVLALIVWQRPNLLLLDE 456
|
....*.
gi 677296704 179 PTTGLD 184
Cdd:PRK10636 457 PTNHLD 462
|
|
| ABC_RNaseL_inhibitor_domain1 |
cd03236 |
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
45-210 |
1.12e-04 |
|
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213203 [Multi-domain] Cd Length: 255 Bit Score: 44.28 E-value: 1.12e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 45 ILGPTGSGKSSLLDVLAARKHPA-GLSGEvlidgipqPPNFKCI----SGYVVQD---DVVMGTMTVRENLHFSAalRLP 116
Cdd:cd03236 31 LVGPNGIGKSTALKILAGKLKPNlGKFDD--------PPDWDEIldefRGSELQNyftKLLEGDVKVIVKPQYVD--LIP 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 117 SSIS------VKEKEDRVTQ--IISELGLSKVADAKvgtemIRGVSGGERKRTSIGMELITEPPVLFLDEPTTGLDASTA 188
Cdd:cd03236 101 KAVKgkvgelLKKKDERGKLdeLVDQLELRHVLDRN-----IDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQR 175
|
170 180
....*....|....*....|..
gi 677296704 189 NAVLMLLKKLSRRGRTIIFSIH 210
Cdd:cd03236 176 LNAARLIRELAEDDNYVLVVEH 197
|
|
| ABCC_SUR2 |
cd03288 |
ATP-binding cassette domain 2 of the sulfonylurea receptor SUR; The SUR domain 2. The ... |
20-189 |
2.39e-04 |
|
ATP-binding cassette domain 2 of the sulfonylurea receptor SUR; The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Pssm-ID: 213255 [Multi-domain] Cd Length: 257 Bit Score: 43.36 E-value: 2.39e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 20 LCKR-KTVEKKILHNVYGIMKPGLN-AILGPTGSGKSSLldVLAARKHPAGLSGEVLIDGIPqppnfkcISGYVVQDDVV 97
Cdd:cd03288 25 LCVRyENNLKPVLKHVKAYIKPGQKvGICGRTGSGKSSL--SLAFFRMVDIFDGKIVIDGID-------ISKLPLHTLRS 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 98 MGTMTVRENLHFSAALRLPSSISVKEKEDRVTQIISELGLSKVADAKVG------TEMIRGVSGGERKRTSIGMELITEP 171
Cdd:cd03288 96 RLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGgldavvTEGGENFSVGQRQLFCLARAFVRKS 175
|
170
....*....|....*...
gi 677296704 172 PVLFLDEPTTGLDASTAN 189
Cdd:cd03288 176 SILIMDEATASIDMATEN 193
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
28-207 |
2.58e-04 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 43.76 E-value: 2.58e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 28 KKILHNVYGIMKPG-LNAILGPTGSGKSSLLDVLAArKHPAGLSGEVLIDGIP---QPPNFKCISG--YVVQD---DVVM 98
Cdd:PRK13549 275 IKRVDDVSFSLRRGeILGIAGLVGAGRTELVQCLFG-AYPGRWEGEIFIDGKPvkiRNPQQAIAQGiaMVPEDrkrDGIV 353
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 99 GTMTVRENLHFsAALRLPSSISVKEKEDRVTQIISELGLSKVadaKVGTEM--IRGVSGGERKRTSIGMELITEPPVLFL 176
Cdd:PRK13549 354 PVMGVGKNITL-AALDRFTGGSRIDDAAELKTILESIQRLKV---KTASPElaIARLSGGNQQKAVLAKCLLLNPKILIL 429
|
170 180 190
....*....|....*....|....*....|.
gi 677296704 177 DEPTTGLDASTANAVLMLLKKLSRRGRTIIF 207
Cdd:PRK13549 430 DEPTRGIDVGAKYEIYKLINQLVQQGVAIIV 460
|
|
| PLN03073 |
PLN03073 |
ABC transporter F family; Provisional |
45-210 |
3.48e-04 |
|
ABC transporter F family; Provisional
Pssm-ID: 215558 [Multi-domain] Cd Length: 718 Bit Score: 43.70 E-value: 3.48e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 45 ILGPTGSGKSSLLDVLAARKhpaglsgevlIDGIPQPPNFKCISGYVVQDDV----------VMGTMTVRENLHFSAALR 114
Cdd:PLN03073 208 LVGRNGTGKTTFLRYMAMHA----------IDGIPKNCQILHVEQEVVGDDTtalqcvlntdIERTQLLEEEAQLVAQQR 277
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 115 LPSSISVKEK----------EDRVTQIISEL---------------------GLSKVADAKvgTEMIRGVSGGERKRTSI 163
Cdd:PLN03073 278 ELEFETETGKgkgankdgvdKDAVSQRLEEIykrlelidaytaearaasilaGLSFTPEMQ--VKATKTFSGGWRMRIAL 355
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 677296704 164 GMELITEPPVLFLDEPTTGLDastANAVLMLLKKLSRRGRTIIFSIH 210
Cdd:PLN03073 356 ARALFIEPDLLLLDEPTNHLD---LHAVLWLETYLLKWPKTFIVVSH 399
|
|
| PRK00635 |
PRK00635 |
excinuclease ABC subunit A; Provisional |
101-247 |
3.67e-04 |
|
excinuclease ABC subunit A; Provisional
Pssm-ID: 234806 [Multi-domain] Cd Length: 1809 Bit Score: 43.66 E-value: 3.67e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 101 MTVRENLHFSAALRlPSSISVKEK----EDRVTQIIsELGLSKVADAKVgtemIRGVSGGERKRTSI----GMEL--ITe 170
Cdd:PRK00635 427 MSLQELFIFLSQLP-SKSLSIEEVlqglKSRLSILI-DLGLPYLTPERA----LATLSGGEQERTALakhlGAELigIT- 499
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 171 ppvLFLDEPTTGLDASTANAVLMLLKKLSRRGRTIIFSIHQ--------------PRYSIFKlfdsltllalGKVLYHGP 236
Cdd:PRK00635 500 ---YILDEPSIGLHPQDTHKLINVIKKLRDQGNTVLLVEHDeqmisladriidigPGAGIFG----------GEVLFNGS 566
|
170
....*....|.
gi 677296704 237 AKQALEYFSSI 247
Cdd:PRK00635 567 PREFLAKSDSL 577
|
|
| YadH |
COG0842 |
ABC-type multidrug transport system, permease component [Defense mechanisms]; |
432-616 |
4.06e-04 |
|
ABC-type multidrug transport system, permease component [Defense mechanisms];
Pssm-ID: 440604 [Multi-domain] Cd Length: 200 Bit Score: 42.11 E-value: 4.06e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 432 RVSAYFLALMIGDLLPMrTAPAIIFSCISYWMIGYQAVTGRFFFFMLTLVMVSYTATAMSLAISAGMDVVAVANLLITIC 511
Cdd:COG0842 44 SRLEILLGKVLAYLLRG-LLQALLVLLVALLFFGVPLRGLSLLLLLLVLLLFALAFSGLGLLISTLARSQEQASAISNLV 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 512 FVLMLIFSGLLVNLPSIMGWLNWLQYFSIPRYGLtvsscppDISGEILAPysntniclmffcrcsgeaylcsqgiTPTTW 591
Cdd:COG0842 123 ILPLTFLSGAFFPIESLPGWLQAIAYLNPLTYFV-------EALRALFLG-------------------------GAGLA 170
|
170 180
....*....|....*....|....*
gi 677296704 592 AMWENIVALFCMTVIFLIIAYAKLR 616
Cdd:COG0842 171 DVWPSLLVLLAFAVVLLALALRLFR 195
|
|
| ABCC_CFTR2 |
cd03289 |
ATP-binding cassette domain 2 of CFTR,subfamily C; The cystic fibrosis transmembrane regulator ... |
30-211 |
4.91e-04 |
|
ATP-binding cassette domain 2 of CFTR,subfamily C; The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Pssm-ID: 213256 [Multi-domain] Cd Length: 275 Bit Score: 42.53 E-value: 4.91e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 30 ILHNVYGIMKPGLN-AILGPTGSGKSSLLDVLAARKHpagLSGEVLIDGIpqppNFKCISGY-------VVQDDVVMGTM 101
Cdd:cd03289 19 VLENISFSISPGQRvGLLGRTGSGKSTLLSAFLRLLN---TEGDIQIDGV----SWNSVPLQkwrkafgVIPQKVFIFSG 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 102 TVRENLHfsaalrlPSSisvKEKEDRVTQIISELGLSKVAD---AKVGTEMIRG---VSGGERKRTSIGMELITEPPVLF 175
Cdd:cd03289 92 TFRKNLD-------PYG---KWSDEEIWKVAEEVGLKSVIEqfpGQLDFVLVDGgcvLSHGHKQLMCLARSVLSKAKILL 161
|
170 180 190
....*....|....*....|....*....|....*.
gi 677296704 176 LDEPTTGLDASTANAVLMLLKKlSRRGRTIIFSIHQ 211
Cdd:cd03289 162 LDEPSAHLDPITYQVIRKTLKQ-AFADCTVILSEHR 196
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
150-207 |
5.22e-04 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 43.12 E-value: 5.22e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*...
gi 677296704 150 IRGVSGGERKRTSIGMELITEPPVLFLDEPTTGLDASTANAVLMLLKKLSRRGRTIIF 207
Cdd:PRK15439 401 ARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLF 458
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
27-206 |
5.86e-04 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 42.85 E-value: 5.86e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 27 EKKILHNvYG----------IMKPG-LNAILGPTGSGKSSLLDVLaarkhpaglSGEvLIdgipqpPNF----------- 84
Cdd:COG1245 76 EEDPVHR-YGengfrlyglpVPKKGkVTGILGPNGIGKSTALKIL---------SGE-LK------PNLgdydeepswde 138
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 85 --KCISGYVVQD---DVVMGTMTVrenlhfsaAL------RLPSSIS--VKE---KED---RVTQIISELGLSKVADAKV 145
Cdd:COG1245 139 vlKRFRGTELQDyfkKLANGEIKV--------AHkpqyvdLIPKVFKgtVRElleKVDergKLDELAEKLGLENILDRDI 210
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 677296704 146 GTemirgVSGGERKRTSIGMELITEPPVLFLDEPTTGLDASTANAVLMLLKKLSRRGRTII 206
Cdd:COG1245 211 SE-----LSGGELQRVAIAAALLRDADFYFFDEPSSYLDIYQRLNVARLIRELAEEGKYVL 266
|
|
| CFTR_protein |
TIGR01271 |
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis ... |
28-211 |
6.66e-04 |
|
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. [Transport and binding proteins, Anions]
Pssm-ID: 273530 [Multi-domain] Cd Length: 1490 Bit Score: 42.98 E-value: 6.66e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 28 KKILHNVYGIMKPGLN-AILGPTGSGKSSLLDVLAarkHPAGLSGEVLIDGIPQppNFKCISGY-----VVQDDVVMGTM 101
Cdd:TIGR01271 1232 RAVLQDLSFSVEGGQRvGLLGRTGSGKSTLLSALL---RLLSTEGEIQIDGVSW--NSVTLQTWrkafgVIPQKVFIFSG 1306
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 102 TVRENLHfsaalrlPSSISVKEKEDRVTQiisELGLSKVADA---KVGTEMIRG---VSGGERKRTSIGMELITEPPVLF 175
Cdd:TIGR01271 1307 TFRKNLD-------PYEQWSDEEIWKVAE---EVGLKSVIEQfpdKLDFVLVDGgyvLSNGHKQLMCLARSILSKAKILL 1376
|
170 180 190
....*....|....*....|....*....|....*.
gi 677296704 176 LDEPTTGLDASTANAVLMLLKKlSRRGRTIIFSIHQ 211
Cdd:TIGR01271 1377 LDEPSAHLDPVTLQIIRKTLKQ-SFSNCTVILSEHR 1411
|
|
| PRK11176 |
PRK11176 |
lipid A ABC transporter ATP-binding protein/permease MsbA; |
44-210 |
7.75e-04 |
|
lipid A ABC transporter ATP-binding protein/permease MsbA;
Pssm-ID: 183016 [Multi-domain] Cd Length: 582 Bit Score: 42.31 E-value: 7.75e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 44 AILGPTGSGKSSLLDVLAaRKHPAGlSGEVLIDGIPqppnfkcISGY----------VVQDDVVMGTMTVRENLHFSA-- 111
Cdd:PRK11176 373 ALVGRSGSGKSTIANLLT-RFYDID-EGEILLDGHD-------LRDYtlaslrnqvaLVSQNVHLFNDTIANNIAYARte 443
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 112 ---------ALRLPSSISVKEK-EDRVTQIISELGLSkvadakvgtemirgVSGGERKRTSIGMELITEPPVLFLDEPTT 181
Cdd:PRK11176 444 qysreqieeAARMAYAMDFINKmDNGLDTVIGENGVL--------------LSGGQRQRIAIARALLRDSPILILDEATS 509
|
170 180
....*....|....*....|....*....
gi 677296704 182 GLDASTANAVLMLLKKLsRRGRTIIFSIH 210
Cdd:PRK11176 510 ALDTESERAIQAALDEL-QKNRTSLVIAH 537
|
|
| PRK10938 |
PRK10938 |
putative molybdenum transport ATP-binding protein ModF; Provisional |
44-206 |
9.78e-04 |
|
putative molybdenum transport ATP-binding protein ModF; Provisional
Pssm-ID: 182852 [Multi-domain] Cd Length: 490 Bit Score: 41.92 E-value: 9.78e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 44 AILGPTGSGKSSLLDVLAAR------------KHPAGLSGEVL---IDGIPQPPNFKCISgyVVQDDVVMGTMTVRENLH 108
Cdd:PRK10938 33 AFVGANGSGKSALARALAGElpllsgerqsqfSHITRLSFEQLqklVSDEWQRNNTDMLS--PGEDDTGRTTAEIIQDEV 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 109 fsaalrlpssisvkEKEDRVTQIISELGLSKVADAKvgtemIRGVSGGERKRTSIGMELITEPPVLFLDEPTTGLDASTA 188
Cdd:PRK10938 111 --------------KDPARCEQLAQQFGITALLDRR-----FKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASR 171
|
170
....*....|....*...
gi 677296704 189 NAVLMLLKKLSRRGRTII 206
Cdd:PRK10938 172 QQLAELLASLHQSGITLV 189
|
|
| ABC_RecN |
cd03241 |
ATP-binding cassette domain of RecN; RecN ATPase involved in DNA repair; similar to ABC ... |
39-212 |
1.76e-03 |
|
ATP-binding cassette domain of RecN; RecN ATPase involved in DNA repair; similar to ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213208 [Multi-domain] Cd Length: 276 Bit Score: 40.65 E-value: 1.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 39 KPGLNAILGPTGSGKSSLLD----VLAARkhpagLSGEVLIDGIPQPpnfkCISG-YVVQDDVVMGTMTVRENLHFSAAL 113
Cdd:cd03241 20 EEGLTVLTGETGAGKSILLDalslLLGGR-----ASADLIRSGAEKA----VVEGvFDISDEEEAKALLLELGIEDDDDL 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 114 RLPSSISVKEKeDRVT---QIISELGLSKVADAKV-----------------------GTEMI----------------R 151
Cdd:cd03241 91 IIRREISRKGR-SRYFingQSVTLKLLRELGSLLVdihgqhdhqnllnperqldlldgGLDDVeflfstnpgeplkplaK 169
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 677296704 152 GVSGGERKRTSIGMELIT----EPPVLFLDEPTTGLDASTANAVLMLLKKLSRRGRtiIFSI-HQP 212
Cdd:cd03241 170 IASGGELSRLMLALKAILarkdAVPTLIFDEIDTGISGEVAQAVGKKLKELSRSHQ--VLCItHLP 233
|
|
| AAA_23 |
pfam13476 |
AAA domain; |
40-58 |
2.13e-03 |
|
AAA domain;
Pssm-ID: 463890 [Multi-domain] Cd Length: 190 Bit Score: 39.79 E-value: 2.13e-03
|
| AAA_21 |
pfam13304 |
AAA domain, putative AbiEii toxin, Type IV TA system; Several members are annotated as being ... |
165-212 |
2.16e-03 |
|
AAA domain, putative AbiEii toxin, Type IV TA system; Several members are annotated as being of the abortive phage resistance system, in which case the family would be acting as the toxin for a type IV toxin-antitoxin resistance system.
Pssm-ID: 433102 [Multi-domain] Cd Length: 303 Bit Score: 40.45 E-value: 2.16e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*...
gi 677296704 165 MELITEPPVLFLDEPTTGLDASTANAVLMLLKKLSRRGRTIIFSIHQP 212
Cdd:pfam13304 252 LSALPKGGLLLIDEPESGLHPKLLRRLLELLKELSRNGAQLILTTHSP 299
|
|
| PRK00635 |
PRK00635 |
excinuclease ABC subunit A; Provisional |
153-210 |
2.21e-03 |
|
excinuclease ABC subunit A; Provisional
Pssm-ID: 234806 [Multi-domain] Cd Length: 1809 Bit Score: 41.35 E-value: 2.21e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 677296704 153 VSGGERKRTSIGMELIT---EPPVLFLDEPTTGLDASTANAVLMLLKKLSRRGRTIIFSIH 210
Cdd:PRK00635 810 LSGGEIQRLKLAYELLApskKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEH 870
|
|
| dppD |
PRK11022 |
dipeptide transporter ATP-binding subunit; Provisional |
153-201 |
2.36e-03 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 182906 [Multi-domain] Cd Length: 326 Bit Score: 40.50 E-value: 2.36e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 677296704 153 VSGGERKRTSIGMELITEPPVLFLDEPTTGLDASTANAVLMLLKKLSRR 201
Cdd:PRK11022 154 LSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQK 202
|
|
| ABC_UvrA_I |
cd03270 |
ATP-binding cassette domain I of the excision repair protein UvrA; Nucleotide excision repair ... |
37-212 |
2.39e-03 |
|
ATP-binding cassette domain I of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213237 [Multi-domain] Cd Length: 226 Bit Score: 39.93 E-value: 2.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 37 IMKPGLNAILGPTGSGKSSL-LDVLAA---RKHPAGLS--GEVLIDGIPQPpNFKCISGyvvqddvvmgtmtvrenlhfs 110
Cdd:cd03270 18 IPRNKLVVITGVSGSGKSSLaFDTIYAegqRRYVESLSayARQFLGQMDKP-DVDSIEG--------------------- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 111 aalrLPSSISVKEKEDR---------VTQIISELGL--SKVA---------DAKVG----TEMIRGVSGGERKR----TS 162
Cdd:cd03270 76 ----LSPAIAIDQKTTSrnprstvgtVTEIYDYLRLlfARVGirerlgflvDVGLGyltlSRSAPTLSGGEAQRirlaTQ 151
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 677296704 163 IGMELITeppVLF-LDEPTTGLDASTANAVLMLLKKLSRRGRTIIFSIHQP 212
Cdd:cd03270 152 IGSGLTG---VLYvLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDE 199
|
|
| ABCC_CFTR1 |
cd03291 |
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The ... |
30-256 |
2.83e-03 |
|
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Pssm-ID: 213258 [Multi-domain] Cd Length: 282 Bit Score: 40.23 E-value: 2.83e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 30 ILHNV-YGIMKPGLNAILGPTGSGKSSLLDVLAARKHPAglSGEVLIDG-IPQPPNFKCISGYVVQDDVVMGtMTVRENL 107
Cdd:cd03291 52 VLKNInLKIEKGEMLAITGSTGSGKTSLLMLILGELEPS--EGKIKHSGrISFSSQFSWIMPGTIKENIIFG-VSYDEYR 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 108 HFSA--ALRLPSSISVKEKEDRVtqIISELGLSkvadakvgtemirgVSGGERKRTSIGMELITEPPVLFLDEPTTGLDA 185
Cdd:cd03291 129 YKSVvkACQLEEDITKFPEKDNT--VLGEGGIT--------------LSGGQRARISLARAVYKDADLYLLDSPFGYLDV 192
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 677296704 186 STANAVL--MLLKKLSRRGRTIIFSihqpRYSIFKLFDSLTLLALGKVLYHG--PAKQALE-YFSSIGYECEPFNN 256
Cdd:cd03291 193 FTEKEIFesCVCKLMANKTRILVTS----KMEHLKKADKILILHEGSSYFYGtfSELQSLRpDFSSKLMGYDTFDQ 264
|
|
| PRK14243 |
PRK14243 |
phosphate transporter ATP-binding protein; Provisional |
153-246 |
3.23e-03 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184588 [Multi-domain] Cd Length: 264 Bit Score: 39.77 E-value: 3.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 153 VSGGERKRTSIGMELITEPPVLFLDEPTTGLDASTANAVLMLLKKLSRRgRTIIFSIHQ----PRYSIFKLFDSLTLLAL 228
Cdd:PRK14243 152 LSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQ-YTIIIVTHNmqqaARVSDMTAFFNVELTEG 230
|
90 100 110
....*....|....*....|....*....|
gi 677296704 229 GK------------VLYHGPAKQALEYFSS 246
Cdd:PRK14243 231 GGrygylvefdrteKIFNSPQQQATRDYVS 260
|
|
| SbcC |
COG0419 |
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]; |
40-58 |
3.32e-03 |
|
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];
Pssm-ID: 440188 [Multi-domain] Cd Length: 204 Bit Score: 39.22 E-value: 3.32e-03
|
| ABC_UvrA_II |
cd03271 |
ATP-binding cassette domain II of the excision repair protein UvrA; Nucleotide excision repair ... |
42-211 |
3.36e-03 |
|
ATP-binding cassette domain II of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213238 [Multi-domain] Cd Length: 261 Bit Score: 39.52 E-value: 3.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 42 LNAILGPTGSGKSSLL-DVLaarkHPAgLSGEVLIDGIpQPPNFKCISGY--------VVQD------------------ 94
Cdd:cd03271 23 LTCVTGVSGSGKSSLInDTL----YPA-LARRLHLKKE-QPGNHDRIEGLehidkvivIDQSpigrtprsnpatytgvfd 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 95 -------DVVMGT---------------------MTVRENLHFSAAlrlPSSISvkekedRVTQIISELGLSKVADAKVG 146
Cdd:cd03271 97 eirelfcEVCKGKrynretlevrykgksiadvldMTVEEALEFFEN---IPKIA------RKLQTLCDVGLGYIKLGQPA 167
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 677296704 147 TEMirgvSGGERKRTSIGMELI---TEPPVLFLDEPTTGLDASTANAVLMLLKKLSRRGRTIIFSIHQ 211
Cdd:cd03271 168 TTL----SGGEAQRIKLAKELSkrsTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHN 231
|
|
| PRK15093 |
PRK15093 |
peptide ABC transporter ATP-binding protein SapD; |
156-241 |
4.99e-03 |
|
peptide ABC transporter ATP-binding protein SapD;
Pssm-ID: 185049 [Multi-domain] Cd Length: 330 Bit Score: 39.40 E-value: 4.99e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 156 GERKRTSIGMELITEPPVLFLDEPTTGLDASTANAVLMLLKKLSRRGRTIIFSIHQPRYSIFKLFDSLTLLALGK----- 230
Cdd:PRK15093 162 GECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQtveta 241
|
90
....*....|....*..
gi 677296704 231 ------VLYHGPAKQAL 241
Cdd:PRK15093 242 pskelvTTPHHPYTQAL 258
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
45-190 |
5.03e-03 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 39.92 E-value: 5.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677296704 45 ILGPTGSGKSSLLDVLAARKHPAglSGEVLIDGIPQppnfkciSGYVVQD-DVVMGTMTVRENLhfSAALRLpssISVKE 123
Cdd:TIGR03719 353 VIGPNGAGKSTLFRMITGQEQPD--SGTIEIGETVK-------LAYVDQSrDALDPNKTVWEEI--SGGLDI---IKLGK 418
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 677296704 124 KEDRVTQIISELGLsKVAD--AKVGTemirgVSGGERKRTSIGMELITEPPVLFLDEPTTGLDASTANA 190
Cdd:TIGR03719 419 REIPSRAYVGRFNF-KGSDqqKKVGQ-----LSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRA 481
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
130-184 |
6.91e-03 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 39.41 E-value: 6.91e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*
gi 677296704 130 QIISELGLSKVADAKvgtemIRGVSGGERKRTSIGMELITEPPVLFLDEPTTGLD 184
Cdd:PRK13409 195 EVVERLGLENILDRD-----ISELSGGELQRVAIAAALLRDADFYFFDEPTSYLD 244
|
|
| |
