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Conserved domains on  [gi|674280730|gb|AIL23303|]
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NADH dehydrogenase subunit 2 (mitochondrion) [Myrmotherula urosticta]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475904)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 1.35e-159

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 450.04  E-value: 1.35e-159
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674280730   1 MNPQAKLLSVASLLLGTTITISSNHWMMAWAGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLLLFSSMTNAWN 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674280730  81 TGQWDITQLTHPMSCMLLTTAISMKLGLVPFHFWFPEVLQGTSLITGLLLATALKFPPTTLFLLTSSSLNPTLLTLMAIA 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674280730 161 STALGGWAGLNQTQTRKILAFSSISHLGWMTVILLYNPKLTLITFYLYCLMTVPIFLTLNTIKTLKLATMSTAWTKIPSL 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674280730 241 TATLLLMLLSLAGLPPLTGFLPKWLIIQELTKQEMTLTATIIALLSLLGLFFYLRLAYCATITLPPNSINHMKQWRTNKS 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|....*.
gi 674280730 321 ANMTTTTFITLSIMLLPISPMIFTIT 346
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMILTII 346
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 1.35e-159

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 450.04  E-value: 1.35e-159
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674280730   1 MNPQAKLLSVASLLLGTTITISSNHWMMAWAGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLLLFSSMTNAWN 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674280730  81 TGQWDITQLTHPMSCMLLTTAISMKLGLVPFHFWFPEVLQGTSLITGLLLATALKFPPTTLFLLTSSSLNPTLLTLMAIA 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674280730 161 STALGGWAGLNQTQTRKILAFSSISHLGWMTVILLYNPKLTLITFYLYCLMTVPIFLTLNTIKTLKLATMSTAWTKIPSL 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674280730 241 TATLLLMLLSLAGLPPLTGFLPKWLIIQELTKQEMTLTATIIALLSLLGLFFYLRLAYCATITLPPNSINHMKQWRTNKS 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|....*.
gi 674280730 321 ANMTTTTFITLSIMLLPISPMIFTIT 346
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMILTII 346
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 14-298 1.07e-25

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 107.12  E-value: 1.07e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674280730  14 LLGTTITISSNHWMMAWAGLEINTLAILPLIS-KSHHPRAIEAATKYFLVQAAASTLLLF-SSMTNAWnTGQWDITQLTH 91
Cdd:COG1007  112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYGA-TGSLNLAGIAA 190

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674280730  92 PMS------------CMLLTTAISMKLGLVPFHFWFPEVLQGTSLITGLLLATALK----FPPTTLFLLTSSSLNP---T 152
Cdd:COG1007  191 ALAagganspllllgLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKiaafAALLRLLVEAFPGLAAdwqL 270

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674280730 153 LLTLMAIASTALGGWAGLNQTQTRKILAFSSISHLGWMTVILLYNPKLTL--ITFYL--YCLMTVPIFLTLNTIK----- 223
Cdd:COG1007  271 LLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVsaALFYLlaYLFMNLGAFAVILLLSrkgge 350

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 674280730 224 TLKLATMSTAWTKIPSLTATLLLMLLSLAGLPPLTGFLPKWLIIQELTKQEMTLTATIIALLSLLGLFFYLRLAY 298
Cdd:COG1007  351 AEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVK 425
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-268 7.60e-23

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 96.61  E-value: 7.60e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674280730   23 SNHWMMAWAGLEINTLAILPLI-SKSHHPRAIEAATKYFLVQAAASTLLLFSSMTNAWNTGQWDITQL-----------T 90
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674280730   91 HPMSCMLLTTAISMKLGLVPFHFWFPEVLQGTSL-ITGLLLATALKFPP-----TTLFLLTSSSLNPTLLTLMAIASTAL 164
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTpVSALLAATLVKAGGyglirRSLLYLPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674280730  165 GGWAGLNQTQTRKILAFSSISHLGWMTVILL----YNPKLTLITFYLYCLMTVPIFL-----TLNTIKTLKLATMSTAWT 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGagtiYGIQAAIFHLLTHGLFSAGLFLcagsvIYRRVHTRNIRDYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 674280730  236 KIPSLTATLLLMLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 14-297 5.92e-21

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 93.47  E-value: 5.92e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674280730   14 LLGTTITISSNHWMMAWAGLEINTLAILPLIS-KSHHPRAIEAATKYFLVQAAASTLLLFSSMTNAWNTGQWDITQLTHP 92
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674280730   93 ------------MSCMLLTTAISMKLGLVPFHFWFPEVLQGTSLITGLLLATALK----FPPTTLFLLTSSSLNPT---L 153
Cdd:TIGR01770 192 lsngmlnislllLGIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKiaifAVFLRLFLYILFGFSEAwqiF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674280730  154 LTLMAIASTALGGWAGLNQTQTRKILAFSSISHLGWMTVILLYNPKLTL--ITFYL--YCLMTVPIFLTLNTIKTLK--- 226
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIkaVLFYIfiYALMSLGAFGVLSLLRSYKdew 351

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 674280730  227 ---LATMSTAWTKIPSLTATLLLMLLSLAGLPPLTGFLPKWLIIQELTKQEMTLTATIIALLSLLGLFFYLRLA 297
Cdd:TIGR01770 352 ieyISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 1.35e-159

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 450.04  E-value: 1.35e-159
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674280730   1 MNPQAKLLSVASLLLGTTITISSNHWMMAWAGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLLLFSSMTNAWN 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674280730  81 TGQWDITQLTHPMSCMLLTTAISMKLGLVPFHFWFPEVLQGTSLITGLLLATALKFPPTTLFLLTSSSLNPTLLTLMAIA 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674280730 161 STALGGWAGLNQTQTRKILAFSSISHLGWMTVILLYNPKLTLITFYLYCLMTVPIFLTLNTIKTLKLATMSTAWTKIPSL 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674280730 241 TATLLLMLLSLAGLPPLTGFLPKWLIIQELTKQEMTLTATIIALLSLLGLFFYLRLAYCATITLPPNSINHMKQWRTNKS 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|....*.
gi 674280730 321 ANMTTTTFITLSIMLLPISPMIFTIT 346
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMILTII 346
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-346 4.34e-131

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 377.99  E-value: 4.34e-131
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674280730   1 MNPQAKLLSVASLLLGTTITISSNHWMMAWAGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLLLFSSMTNAWN 80
Cdd:MTH00135   1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674280730  81 TGQWDITQLTHPMSCMLLTTAISMKLGLVPFHFWFPEVLQGTSLITGLLLATALKFPPTTLFLLTSSSlNPTLLTLMAIA 160
Cdd:MTH00135  81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLT 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674280730 161 STALGGWAGLNQTQTRKILAFSSISHLGWMTVILLYNPKLTLITFYLYCLMTVPIFLTLNTIKTLKLATMSTAWTKIPSL 240
Cdd:MTH00135 160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674280730 241 TATLLLMLLSLAGLPPLTGFLPKWLIIQELTKQEMTLTATIIALLSLLGLFFYLRLAYCATITLPPNSINHMKQWRT-NK 319
Cdd:MTH00135 240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLpST 319

                        330       340
                 ....*....|....*....|....*..
gi 674280730 320 SANMTTTTFITLSIMLLPISPMIFTIT 346
Cdd:MTH00135 320 QLTLPLAISTTATLMLLPLTPAILALL 346
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-345 2.70e-130

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 375.80  E-value: 2.70e-130
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674280730   1 MNPQAKLLSVASLLLGTTITISSNHWMMAWAGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLLLFSSMTNAWN 80
Cdd:MTH00070   1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674280730  81 TGQWDITQLTHPMSCMLLTTAISMKLGLVPFHFWFPEVLQGTSLITGLLLATALKFPPTTLFLLTSSSLNPTLLTLMAIA 160
Cdd:MTH00070  81 TGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674280730 161 STALGGWAGLNQTQTRKILAFSSISHLGWMTVILLYNPKLTLITFYLYCLMTVPIFLTLNTIKTLKLATMSTAWTKIPSL 240
Cdd:MTH00070 161 STLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674280730 241 TATLLLMLLSLAGLPPLTGFLPKWLIIQELTKQEMTLTATIIALLSLLGLFFYLRLAYCATITLPPNSINHMKQWRTNKS 320
Cdd:MTH00070 241 TSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNK 320

                        330       340
                 ....*....|....*....|....*
gi 674280730 321 ANMTTTTFITLSIMLLPISPMIFTI 345
Cdd:MTH00070 321 TNNLLSLTIILSLMLLPITPTILNL 345
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-346 1.83e-115

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 338.36  E-value: 1.83e-115
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674280730   1 MNPQAKLLSVASLLLGTTITISSNHWMMAWAGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLLLFSSMTNAWN 80
Cdd:MTH00105   1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674280730  81 TGQWDITQLTHPMSCMLLTTAISMKLGLVPFHFWFPEVLQGTSLITGLLLATALKFPPTTLFLLTSSSLNPTLLTLMAIA 160
Cdd:MTH00105  81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674280730 161 STALGGWAGLNQTQTRKILAFSSISHLGWMTVILLYNPKLTLITFYLYCLMTVPIFLTLNTIKTLKLATMSTAWTKIPSL 240
Cdd:MTH00105 161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674280730 241 TATLLLMLLSLAGLPPLTGFLPKWLIIQELTKQEMTLTATIIALLSLLGLFFYLRLAYCATITLPPnSINHMK-QWRTNK 319
Cdd:MTH00105 241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFP-STNNMKmKWQFEN 319

                        330       340
                 ....*....|....*....|....*...
gi 674280730 320 SANMTTT-TFITLSIMLLPISPMIFTIT 346
Cdd:MTH00105 320 TKPMTLLpTLIILSTMLLPLTPMLSILE 347
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-346 1.05e-96

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 290.33  E-value: 1.05e-96
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674280730   1 MNPQAKLLSVASLLLGTTITISSNHWMMAWAGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLLLFSSMTNAWN 80
Cdd:MTH00200   1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674280730  81 TGQWDITQLTHPMSCMLLTTAISMKLGLVPFHFWFPEVLQGTSLITGLLLATALKFPPTTLFLLTSSSLNPTLLTLMAIA 160
Cdd:MTH00200  81 SGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674280730 161 STALGGWAGLNQTQTRKILAFSSISHLGWMTVILLYNPKLTLITFYLYCLMTVPIFLTLNTIKTLKLATMSTAWTKIPSL 240
Cdd:MTH00200 161 SVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPIL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674280730 241 TATLLLMLLSLAGLPPLTGFLPKWLIIQELTKQEMTLTATIIALLSLLGLFFYLRLAYCATITLPPNSINHMKQWRTNKS 320
Cdd:MTH00200 241 SMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSN 320

                        330       340
                 ....*....|....*....|....*.
gi 674280730 321 ANMTTTTFITLSIMLLPISPMIFTIT 346
Cdd:MTH00200 321 SNLLVGLLLLLSILGLPLTPQLLFLF 346
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 1-336 3.68e-84

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 258.32  E-value: 3.68e-84
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674280730   1 MNPQAKLLSVASLLLGTTITISSNHWMMAWAGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLLLFSSMTNAWN 80
Cdd:MTH00041   1 MNRNVLIFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674280730  81 TGQWDITQLTHPMSCMLLTTAISMKLGLVPFHFWFPEVLQGTSLITGLLLATALKFPPTTLFLLTSSSLNPTLLTLMAIA 160
Cdd:MTH00041  81 SGSWSINGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674280730 161 STALGGWAGLNQTQTRKILAFSSISHLGWMTVILLYNPKLTLITFYLYCLMTVPIFLTLNTIKTLKLATMSTAWTKIPSL 240
Cdd:MTH00041 161 SVLVGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPIS 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674280730 241 TATLLLMLLSLAGLPPLTGFLPKWLIIQELTKQEMTLTATIIALLSLLGLFFYLRLAYCATITLPPNSINHMKQWRTNKS 320
Cdd:MTH00041 241 AFLFILSILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSISLFSWRNSGN 320

                        330
                 ....*....|....*.
gi 674280730 321 ANMTTTTFITLSIMLL 336
Cdd:MTH00041 321 ITVYGVILSILSSISI 336
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-345 1.97e-57

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 189.26  E-value: 1.97e-57
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674280730   1 MNPQAKLLSVASLLLGTTITISSNHWMMAWAGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLLLFSSMTNAWN 80
Cdd:MTH00160   2 MMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNMLN 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674280730  81 TGqwditqLTHPMSCMLLTTAISMKLGLVPFHFWFPEVLQGTSLITGLLLATALKFPPTTLFlltSSSLNPTLLTLMAIA 160
Cdd:MTH00160  82 LM------LFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILL---SYLINNNFIIIIIIL 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674280730 161 STALGGWAGLNQTQTRKILAFSSISHLGWMTVILLYNPKLTLITFYLYCLMTVPIFLTLNTIKTLKLATMSTAWTKIPSL 240
Cdd:MTH00160 153 SAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKI 232

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674280730 241 TATLLLMLLSLAGLPPLTGFLPKWLIIQELTKQEMTLTATIIALLSLLGLFFYLRLAYCAtITLPPNSINHMKQWRTNKS 320
Cdd:MTH00160 233 KFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSS-LMLNYNKNKWNLKKKKNKF 311

                        330       340
                 ....*....|....*....|....*
gi 674280730 321 aNMTTTTFITLSIMLLPISPMIFTI 345
Cdd:MTH00160 312 -SLILNFLSFISLFGLILSSLLFLL 335
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 5-323 7.68e-51

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 171.99  E-value: 7.68e-51
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674280730   5 AKLLSVASLLLGTTITISSNHWMMAWAGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLLLFSSMTNAWNTGQW 84
Cdd:MTH00144   5 SNLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSW 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674280730  85 DItqlthpMSCMLLttAISMKLGLVPFHFWFPEVLQGTSLITGLLLATALKFPPttLFLLTSSSLNPTLLT---LMAIAS 161
Cdd:MTH00144  85 FS------MSLLLL--GLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAP--LFLLSNFLDLYWLAYllcVISVLS 154

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674280730 162 TALGGWAGLNQTQTRKILAFSSISHLGWMTVILLYNPKLTLITFYLYCLMTVPIFLTLNTiKTLKLATMSTAWTKIPSLT 241
Cdd:MTH00144 155 ALVGSIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWS-GDSGSMKDLGSLKPSYKTG 233

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674280730 242 ATLLLMLLSLAGLPPLTGFLPKWLIIQELTKQEMTLTATIIALLSLLGLFFYLRLAYCATITLpPNSINHMKQWRTNKSA 321
Cdd:MTH00144 234 LSIISLLLSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFLSS-SKSKKSNSSKVLNSSI 312


                 ..
gi 674280730 322 NM 323
Cdd:MTH00144 313 IS 314
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 7-337 5.97e-46

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 159.17  E-value: 5.97e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674280730   7 LLSVASLLLGTTITISSNHWMMAWAGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLLLFSSmtnawnTGQWDI 86
Cdd:MTH00011   9 FLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGM------TMMWSF 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674280730  87 TQLTHPMSCMLLTTAISMKLGLVPFHFWFPEVLQGTSLITGLLLATALKFPPTTLFLLTSSSLNPTLLTLMAIASTALGG 166
Cdd:MTH00011  83 PSLLKNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAGG 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674280730 167 WAGLNQTQTRKILAFSSISHLGWMTVILLYNPKLTLITFYLYCLMTVPIFLTLNTIKTLKLATMSTAWTKIPSLTATLLL 246
Cdd:MTH00011 163 LGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFI 242

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674280730 247 MLLSLAGLPPLTGFLPKWLIIQELTKQEMTLTATIIALLSLLGLFFYLRLAYcATITLPPNSINhmKQWRTNKSANMTTT 326
Cdd:MTH00011 243 MLLSLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIF-NFMYLSPTFSS--LKSAPYEPKTKILI 319

                        330
                 ....*....|.
gi 674280730 327 TFITLSIMLLP 337
Cdd:MTH00011 320 SMCTLSLGLIP 330
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 11-298 1.20e-40

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 145.20  E-value: 1.20e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674280730  11 ASLLLGTTITISSNHWMMAWAGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLLLFSSMTNAWNTgqwditqLT 90
Cdd:MTH00197   5 FIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSFSNL-------YL 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674280730  91 HPMSCMLLTTAISMKLGLVPFHFWFPEVLQGTSLITGLLLATALKFPPttLFLLTSSSLNPTLLTLMAIASTALGGWAGL 170
Cdd:MTH00197  78 SLLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAP--LLILAFNSSSFMGLLICSVLSSLIGGIGGM 155

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674280730 171 NQTQTRKILAFSSISHLGWMTVILLYNPKLTLITFYLYCLMTVPIFLTLNTIKTLKLATMSTAWTKIPSLTATLLLMLLS 250
Cdd:MTH00197 156 NQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLSFLS 235

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*...
gi 674280730 251 LAGLPPLTGFLPKWLIIQELTKQEMTLTATIIALLSLLGLFFYLRLAY 298
Cdd:MTH00197 236 LGGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAY 283
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 14-298 1.07e-25

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 107.12  E-value: 1.07e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674280730  14 LLGTTITISSNHWMMAWAGLEINTLAILPLIS-KSHHPRAIEAATKYFLVQAAASTLLLF-SSMTNAWnTGQWDITQLTH 91
Cdd:COG1007  112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYGA-TGSLNLAGIAA 190

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674280730  92 PMS------------CMLLTTAISMKLGLVPFHFWFPEVLQGTSLITGLLLATALK----FPPTTLFLLTSSSLNP---T 152
Cdd:COG1007  191 ALAagganspllllgLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKiaafAALLRLLVEAFPGLAAdwqL 270

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674280730 153 LLTLMAIASTALGGWAGLNQTQTRKILAFSSISHLGWMTVILLYNPKLTL--ITFYL--YCLMTVPIFLTLNTIK----- 223
Cdd:COG1007  271 LLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVsaALFYLlaYLFMNLGAFAVILLLSrkgge 350

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 674280730 224 TLKLATMSTAWTKIPSLTATLLLMLLSLAGLPPLTGFLPKWLIIQELTKQEMTLTATIIALLSLLGLFFYLRLAY 298
Cdd:COG1007  351 AEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVK 425
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 13-296 3.17e-24

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 101.65  E-value: 3.17e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674280730  13 LLLGTTITISSNHWMMAWAGLEINTLAILPLI-SKSHHPRAIEAATKYFLVQAAASTLLLFS-------------SMTNA 78
Cdd:MTH00196   2 VALGILCLISSSNWLSVYLAIELQTLSLFILIaQNRGSGYSAEAGLKYFVLGALSSGLFLFGcallcgttgglhlSYINL 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674280730  79 WNTGQWDITQLTHPMSCMLLTTAISMKLGLVPFHFWFPEVLQGTSLITGLLLATALKFppTTLFLLTSSSLNPTLLTLMA 158
Cdd:MTH00196  82 VLNSGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKL--GIFSILVSIGLNVNILLIGG 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674280730 159 IASTALGGWAGLNQTQTRKILAFSSISHLGWMTVILLYNP----KLTLITFYLYCLMTVPIF---LTLNTIKTLkLATMS 231
Cdd:MTH00196 160 LFSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIGSfesiQASLVYLFIYIIMSICVFsiiLALNVYKNL-IIEFS 238

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 674280730 232 TAWTKIPSLTATLLLMLLSLAGLPPLTGFLPKWLIIQELTKQEMTLTATIIALLSLLGLFFYLRL 296
Cdd:MTH00196 239 GLSRRLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRI 303
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-268 7.60e-23

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 96.61  E-value: 7.60e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674280730   23 SNHWMMAWAGLEINTLAILPLI-SKSHHPRAIEAATKYFLVQAAASTLLLFSSMTNAWNTGQWDITQL-----------T 90
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674280730   91 HPMSCMLLTTAISMKLGLVPFHFWFPEVLQGTSL-ITGLLLATALKFPP-----TTLFLLTSSSLNPTLLTLMAIASTAL 164
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTpVSALLAATLVKAGGyglirRSLLYLPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674280730  165 GGWAGLNQTQTRKILAFSSISHLGWMTVILL----YNPKLTLITFYLYCLMTVPIFL-----TLNTIKTLKLATMSTAWT 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGagtiYGIQAAIFHLLTHGLFSAGLFLcagsvIYRRVHTRNIRDYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 674280730  236 KIPSLTATLLLMLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
14-296 1.68e-22

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 97.97  E-value: 1.68e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674280730  14 LLGTTITISSNHWMMAWAGLEINTLAILPLIS-KSHHPRAIEAATKYFLVQAAASTLLL--------------FSSMTNA 78
Cdd:PRK05777 113 LLGMMVMVSANDLLTLFLGLELLSLPLYALAAlRRDRRRSLEAAIKYFVLGALASGFLLygmsllygatgslsFAGIAKA 192

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674280730  79 WNTGQWDITQLThpMSCMLLTTAISMKLGLVPFHFWFPEVLQGTSLITGLLLATALK---FPPTT-LFLLTSSSLNPT-- 152
Cdd:PRK05777 193 LADGSGNSLLLL--FGLVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKiaaFAVLLrLLVVAFGGLSEDwq 270

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674280730 153 -LLTLMAIASTALGGWAGLNQTQTRKILAFSSISHLGWMTVILLYNPKLTL--ITFYL--YCLMTVPIF--LTLNTIKTL 225
Cdd:PRK05777 271 qVLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYsaVLFYLlaYLFMTLGAFgvISLLRRKGG 350

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 674280730 226 KLATMST----AWTKiPSLTATLLLMLLSLAGLPPLTGFLPKWLIIQELTKQEMTLTATIIALLSLLGLFFYLRL 296
Cdd:PRK05777 351 EAESISDfaglSKRS-PLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYYLRV 424
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 14-297 5.92e-21

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 93.47  E-value: 5.92e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674280730   14 LLGTTITISSNHWMMAWAGLEINTLAILPLIS-KSHHPRAIEAATKYFLVQAAASTLLLFSSMTNAWNTGQWDITQLTHP 92
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674280730   93 ------------MSCMLLTTAISMKLGLVPFHFWFPEVLQGTSLITGLLLATALK----FPPTTLFLLTSSSLNPT---L 153
Cdd:TIGR01770 192 lsngmlnislllLGIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKiaifAVFLRLFLYILFGFSEAwqiF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674280730  154 LTLMAIASTALGGWAGLNQTQTRKILAFSSISHLGWMTVILLYNPKLTL--ITFYL--YCLMTVPIFLTLNTIKTLK--- 226
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIkaVLFYIfiYALMSLGAFGVLSLLRSYKdew 351

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 674280730  227 ---LATMSTAWTKIPSLTATLLLMLLSLAGLPPLTGFLPKWLIIQELTKQEMTLTATIIALLSLLGLFFYLRLA 297
Cdd:TIGR01770 352 ieyISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 13-337 7.70e-21

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 92.77  E-value: 7.70e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674280730  13 LLLGTTITISSNHWMMAWAGLEINTLAILPLIS-KSHHPRAIEAATKYFLVQAAASTLLLFSSMTNAWNTGQWDI----T 87
Cdd:MTH00199 106 VALGSLLLVSSINWLSIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSIqginS 185

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674280730  88 QLTHPMSCMLLTTAISMKLGLVPFHFWFPEVLQGTSLITGLLLATALKFppTTLFLLTSSSLNPTLLTLMAIASTALGGW 167
Cdd:MTH00199 186 ILTGDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKI--GVFSILVQIGPVTNVVLICAVLSIIYGAI 263

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674280730 168 AGLNQTQTRKILAFSSISHLGWMTVILLYNP----KLTLITFYLYCLMTVPIF---LTLNTIKTLkLATMSTAWTKIPSL 240
Cdd:MTH00199 264 GALNQTKIKRLLAYSGIGHMGFILFGVAIGSfesiQASLIYMIIYVIMSICSFsiiLSLKLTKGL-IVEVSGLSRKNPVI 342

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674280730 241 TATLLLMLLSLAGLPPLTGFLPKWLIIQELTKQEMTLTATIIALLSLLGLFFYLRLAYcaTITLPPNSINHMKQWRTNKS 320
Cdd:MTH00199 343 ALTLALTFLSIAGIPPLAGFLSKWLILLSGVSSGYYLICIIAVLSSVIAGVYYVRVVQ--IIYFQADYSILIWQKVLKKE 420

                        330       340
                 ....*....|....*....|....*
gi 674280730 321 ANMT--------TTTFITLSIMLLP 337
Cdd:MTH00199 421 ERLDlsksiligVTFFIILFLMISP 445
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 13-296 3.27e-16

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 79.04  E-value: 3.27e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674280730  13 LLLGTTITISSNHWMMAWAGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLLLFSSMTNAWNTGQWDITQLTHP 92
Cdd:COG0651  116 LLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLAAR 195

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674280730  93 MS----------CMLLTTAISMKLGLVPFHFWFPEVL-QGTSLITGLLLATALKFPP-------TTLFLLTSSSLNPTLL 154
Cdd:COG0651  196 LAeldpglllaaFALLLVGFGIKAALFPLHFWLPDAYpAAPSPVSALLSGLLTKVGVyailrvlTLLFGADPALFLGTLL 275

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674280730 155 TLMAIASTALGGWAGLNQTQTRKILAFSSISHLGWMTV-ILLYNPKLTLITFYLY---CLMTVPIFLT----LNTIKTLK 226
Cdd:COG0651  276 LVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLgLGLGTPLGLAGALFHLlnhALAKALLFLAagaiERATGTRD 355

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674280730 227 LATMSTAWTKIPSLTATLLLMLLSLAGLPPLTGFLPKWLIIQELTKQEMTLTATIIALLSLLGLFFYLRL 296
Cdd:COG0651  356 LDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLAYFVRI 425
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 15-302 2.83e-14

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 73.74  E-value: 2.83e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674280730  15 LGTTITISSNHWMMAWAGLEINTLAILPLISKSHHPRAI---------EAATKYFLVQAAASTLLLFSSMTNAWNTGQ-- 83
Cdd:MTH00198 199 LGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGCALYFGFTGNeg 278

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674280730  84 ------------WDITQLTHPMSCMLLTTAISMKLGLVPFHFWFPEVLQGTSLITGLLLATALKFppTTLFLLTSSSLNP 151
Cdd:MTH00198 279 mlgtilsatletTNIELRQGSLGYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKF--TVYILLTSLVITS 356

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674280730 152 TLLTLMAIASTALGGWAGLNQTQTRKILAFSSISHLGWM-------TVILLYNPKLTLITFYLYCLMTVPIFLTLNTIKT 224
Cdd:MTH00198 357 KLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFIligvsagTYESLQASWTYAVTYLVSALASFTVICTLEEFGT 436

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674280730 225 L------------------KLATMSTAWTKIPSLTATLLLMLLSLAGLPPLTGFLPKWLIIQELTKQEMTLTATIIALLS 286
Cdd:MTH00198 437 RtptsrqrdgsfgnynlvrRLVDLTILSRGQPYIAFSLAIVFLSLAGIPPLLGFLGKWFILVGSIKIAFSSSLSIYYLVA 516

                        330       340
                 ....*....|....*....|...
gi 674280730 287 LLGL-------FFYLRLAycATI 302
Cdd:MTH00198 517 LFAIictcisaFYYIRIV--ATI 537
ndhB CHL00049
NADH dehydrogenase subunit 2
 51-296 8.98e-09

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 56.55  E-value: 8.98e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674280730  51 RAIEAATKYFLVQAAASTLLLFS-SMTNAWNTGQWDI---------TQLTHPMSC----MLLTTAISMKLGLVPFHFWFP 116
Cdd:CHL00049 159 RSNEATMKYLLMGGASSSILVYGfSWLYGLSGGEIELqeivnglinTQMYNSPGIsialIFITVGIGFKLSLAPFHQWTP 238

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674280730 117 EVLQG-----------TSLITGLLLATALKfppTTLFLLTSSSLNpTLLTLMAIASTALGGWAGLNQTQTRKILAFSSIS 185
Cdd:CHL00049 239 DVYEGsptpvvaflsvTSKVAASALATRIF---DIPFYFSSNEWH-LLLEILAILSMILGNLIAITQTSMKRMLAYSSIG 314

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674280730 186 HLGWMTVILL-------YNPKLTLITFYlyclmtvpIFLTLNTIKTLKLATMSTA----------WTKIPSLTATLLLML 248
Cdd:CHL00049 315 QIGYVIIGIIvgdsndgYASMITYMLFY--------IFMNLGTFACIVLFGLRTGtdnirdyaglYTKDPFLALSLALCL 386

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*...
gi 674280730 249 LSLAGLPPLTGFLPKWLIIQELTKQEMTLTATIIALLSLLGLFFYLRL 296
Cdd:CHL00049 387 LSLGGIPPLAGFFGKLYLFWCGWQAGLYFLVSIGLLTSVISIYYYLKI 434
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-307 1.01e-08

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 56.43  E-value: 1.01e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674280730  33 LEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLLLFS-----SMTNAWNTGqwDITQLTHPMSCM-----LLTTAI 102
Cdd:PRK08375 135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGvgllyGVTGTLNMA--DLAGALAENPTVvtafgFVLLAL 212

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674280730 103 SMKLGLVPFHFWFPEVLQGTS-LITGLLLATALKFPPTTLFLLT------SSSLNPTLLTLM---AIASTALGGWAGLNQ 172
Cdd:PRK08375 213 ALKAAVFPLHTWLPRAYPAAPpVVTALLSGLVTKVAVYALIRIYftvfggDFRFALGLGWLLavlALLSMLVGSLAALGQ 292

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674280730 173 TQTRKILAFSSISHLGWMT--VILLYNPKLTLITFYL--YCLMTVPIFLTLNTI----KTLKLATMSTAWTKIPSLTATL 244
Cdd:PRK08375 293 DDVKRVLAYSTVSQMGYILlgLALLTPLALAAGLLHLlhHALMKGALFLAAGAIevtyGTRRLSELSGLGRRMPLTAAAF 372

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 674280730 245 LLMLLSLAGLPPLTGFLPKWLIIQELTKQEMTLTATIIALLSLLGLFFYLRLAYCATITLPPN 307
Cdd:PRK08375 373 AVASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRIWYRAFFGPPPP 435
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 49-192 6.58e-08

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 53.93  E-value: 6.58e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674280730  49 HPRAIEAATKYFLVQAAASTLLLFSSMTNAWNTGQW--DITQLT-HPMS---------CMLLTTAIsmKLGLVPFHFWFP 116
Cdd:COG1008  156 GERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfDIAELAaAPLPltaqlllflAFFIAFAV--KVPMFPFHTWLP 233

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674280730 117 EVLQ-----GTSLITGLLLATA----LKFPpTTLFLLTSSSLNPTLLTLmAIASTALGGWAGLNQTQTRKILAFSSISHL 187
Cdd:COG1008  234 DAHVeaptaGSVLLAGVLLKMGgyglLRFA-LPLFPEASAYFAPLLAAL-GVIGIIYGALVALAQTDLKRLIAYSSVSHM 311


                 ....*
gi 674280730 188 GWMTV 192
Cdd:COG1008  312 GFVLL 316
NADH_dehy_S2_C pfam06444
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ...
 291-340 1.45e-07

NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.


Pssm-ID: 461914 [Multi-domain]  Cd Length: 51  Bit Score: 47.64  E-value: 1.45e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 674280730  291 FFYLRLAYCATITLPPNSINHMKQWRTNKSANMT-TTTFITLSIMLLPISP 340
Cdd:pfam06444   1 FFYLRLSYSTTLTLFPNTNNSKMKWRFNSTKNTLlLPTLTTLSILLLPLTP 51
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-266 6.68e-07

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 50.87  E-value: 6.68e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674280730  33 LEINTLAILPLIS-KSHHPRAIEAATKYFLVQAAASTLLLFSSMTNAWNTGQWDITQLTHPMS----------CMLLTTA 101
Cdd:PRK08376 150 LEIMSIASYALVAfRNDTWEAIEAGIKYMFVGSLASSMVLLGIALLYGQYGTLNMAYLAVKMSenptvvakiaLALFIAG 229

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674280730 102 ISMKLGLVPFHFWFPEVL-QGTSLITGLLLAT---ALKFPPTTLFLLTSSSLNPT----LLTLMAIASTALGGWAGLNQT 173
Cdd:PRK08376 230 LAMKSGAVPVHMWLPDAYpAAPSSISAMLLVIkqaGLYALARVLFSIYGPAINLAtvgwVIIILGCLTMFVGVAMAVVQK 309

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674280730 174 QTRKILAFSSISHLGWMTVIL------LYNPKLTLITF----------YLYCLMTVPIFLT----LNTIKTLKLATMSTA 233
Cdd:PRK08376 310 DVKRLLAYHSVSQIGYMLLGLgvglaaLGDPAMASYGEialaggiyhiVNHALYKALLFLTagavIYETGTRNLNELGGL 389

                        250       260       270
                 ....*....|....*....|....*....|...
gi 674280730 234 WTKIPSLTATLLLMLLSLAGLPPLTGFLPKWLI 266
Cdd:PRK08376 390 ARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLI 422
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
50-263 1.77e-06

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 49.66  E-value: 1.77e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674280730  50 PRAIEAATKYFLVQAAASTLLLF-SSMTNAWNTGQWDITQLTHPM----------SCMLLTTAISMKLGLVPFHFWFPEV 118
Cdd:PRK02504 157 PRSNEAALKYLLIGAASSAIFLYgSSLLYGLSGGSTQLSAIALALitspslglalALVFVIAGIAFKISAVPFHQWTPDV 236

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674280730 119 LQGT-----------SLITGLLLATALKfppTTLFLLTSSSLNpTLLTLMAIASTALGGWAGLNQTQTRKILAFSSISHL 187
Cdd:PRK02504 237 YEGSptpvvaflsvgSKAAGFALAIRLL---VTAFPSFDEQWK-LLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQA 312

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674280730 188 GWMTVILLYNPK--LTLITFYL--YCLMTVPIF--LTLNTIKTL--KLATMSTAWTKIPSLTATLLLMLLSLAGLPPLTG 259
Cdd:PRK02504 313 GFVMIGLVAGTEagYASMVFYLlaYLFMNLGAFacVILFSLRTGtdQISDYAGLYQKDPLLTLGLSLCLLSLGGIPPLAG 392


                 ....
gi 674280730 260 FLPK 263
Cdd:PRK02504 393 FFGK 396
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 50-192 1.06e-05

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 46.86  E-value: 1.06e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674280730   50 PRAIEAATKYFLVQAAASTLLLFSSMTNAWNTGQ-WDITQL-THPMSCMLLT-------TAISMKLGLVPFHFWFPEV-L 119
Cdd:TIGR01972 152 PNRIYAAMKFFLYTLAGSLLMLLAILGLYFLGGGtFDLLELlNLPLPFGVQTwlflaffIAFAVKVPLFPLHTWLPDAhV 231

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674280730  120 QGTSLITGLLLATALKFPP-------TTLFLLTSSSLNPTLLTLmAIASTALGGWAGLNQTQTRKILAFSSISHLGWMTV 192
Cdd:TIGR01972 232 EAPTAGSVILAGVLLKMGTygflrfnLPLFPDASLYFAPVLAAL-GVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLL 310
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 20-192 1.92e-05

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 46.08  E-value: 1.92e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674280730  20 TISSNHWMMAWAGLEINTLAILPLISKSHHPRAIEAATKYFLV------QAAASTLLLFSS----MTNAWNTGQW-DITQ 88
Cdd:PRK06458 124 ALTSNNLGLMWVAIEATTLSSALLVGIYRTRASLEAAWKYIIIcsvgvaFALFGTILVYANaatvMGDGEMAILWtELLK 203

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674280730  89 LTHPMSCMLLTTAISM-------KLGLVPFHFWFP----EVLQGTS-LITGLLLATALkFPPTTLFLLTSSSLNP----T 152
Cdd:PRK06458 204 HASLLDPTLMKLAFVFlligfgtKVGLFPMHAWLPdahsEAPSPVSaLLSGVLLNVAL-YAVLRYYILIDAAIGSdfpgR 282

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 674280730 153 LLTLMAIASTALGGWAGLNQTQTRKILAFSSISHLGWMTV 192
Cdd:PRK06458 283 LLLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAF 322
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 13-190 3.45e-05

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 45.52  E-value: 3.45e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674280730  13 LLLGTTITISSNHWMMAWAGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAA------STLLLFSSMTNAWNTGQWDI 86
Cdd:PRK08676 111 LLSVITFAFFSDNLALFWIFAELTTVFSAMLIAILSARENIDAALKYIFIASTAmifafiGLIFLFSLTRQALGTGTLNW 190

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674280730  87 TQLTHP----------MSCMLLTTAISMKLGLVPFHFWFPEV-LQGTSLITGLLLATALKFPPTTLF----LLTSSSLNP 151
Cdd:PRK08676 191 TELAAHasllspsvlgASFLFIFIGFLAKSGLVPFHTWLPAAyAKAPSVVSALLSGTVLNIGIYGILrlsaLLRQSGAAE 270

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|..
gi 674280730 152 T---LLTLMAIASTALGGWAGLNQTQTRKILAFSSISHLGWM 190
Cdd:PRK08676 271 QfsnVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLM 312
PRK08168 PRK08168
NADH-quinone oxidoreductase subunit L;
7-190 7.53e-05

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236171 [Multi-domain]  Cd Length: 516  Bit Score: 44.30  E-value: 7.53e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674280730   7 LLSVASLLLGTTITISSNHW---MMAWA--GLEINTLailpLISKSHHPRAIEAATKYFLVQAAASTLLLFSSMTNAWNT 81
Cdd:PRK08168 103 VRALAGVLAAVHLLVLSDHLlvlIAAWAaiSLALHRL----LCFYPDRPFARLAAHKKFIADRLAELLLLAAAALAYLEV 178

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674280730  82 GQWDITQL-----THPMS------CMLLTTAISMKLGLVPFHFWFPEVLQGTSLITGLLLA--------TALKFPPttlf 142
Cdd:PRK08168 179 GSLSLSALwahlaAQGASpslqaaALLLVLAVILKTAQLPVHGWLIQVMEAPTPVSALLHAgvvnlggfVLIRFAP---- 254

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*...
gi 674280730 143 LLTSSSLNPTLLTLMAIASTALGGWAGLNQTQTRKILAFSSISHLGWM 190
Cdd:PRK08168 255 LLEQAPPARWLLVLVGLATAVLAGLVMLTRISIKVRLAWSTVAQMGFM 302
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 97-194 7.79e-05

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 44.53  E-value: 7.79e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674280730  97 LLTTAISmKLGLVPFHFWFPEVLQGTSLITGLLLATAL---------KFPPTtlfLLTSSSLNPTLLTLmAIASTALGGW 167
Cdd:PRK12644 209 ILVGALS-KSAIVPFHFWLPGAMAAPTPVSAYLHAAAMvkagiylvaRLAPG---FADVPVWRPTVLVL-GLATMLLGGW 283

                         90       100
                 ....*....|....*....|....*..
gi 674280730 168 AGLNQTQTRKILAFSSISHLGWMTVIL 194
Cdd:PRK12644 284 RALRQHDLKLILAYGTVSQLGFLTVLV 310
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 50-192 8.23e-05

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 44.04  E-value: 8.23e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674280730  50 PRAIEAATKYFLVQAAASTLLLFSSMT----NAWNTGQWDITQL-THPMS---------CMLLTTAIsmKLGLVPFHFWF 115
Cdd:PRK05846 157 KNRIYAATKFFLYTLLGSLLMLVAIIYlvvvYYNATGTFDIADLlNLPLPpgvqywlflAFFIAFAV--KMPMFPLHTWL 234

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674280730 116 PEVLQ-----GTSLITGLLLATA----LKF--PpttLFLLTSSSLNPTLLTLmAIASTALGGWAGLNQTQTRKILAFSSI 184
Cdd:PRK05846 235 PDAHVqaptaGSVLLAGILLKMGayglLRFslP---LFPDASHEFAPIIITL-GVIAIIYGALVALAQTDIKKLIAYSSI 310


                 ....*...
gi 674280730 185 SHLGWMTV 192
Cdd:PRK05846 311 SHMGFVTL 318
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 23-194 2.64e-04

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 42.83  E-value: 2.64e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674280730  23 SNHWMMAWAGLEINTLAILPLISKSHH-PRAIEAATKYFLVQAAASTLLLFSSMTNAWNTGQWDITQL----THPMSCML 97
Cdd:COG1009  130 SDNLLLLFVFWELVGLCSYLLIGFWYEkPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLNFSELlaaaPTILSSPL 209

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674280730  98 LTTAISM-------KLGLVPFHFWFPEVLQGTSLITGLLLA----TA-----LKFPPttLFLLTssslnPTLLTLMAI-- 159
Cdd:COG1009  210 LTLILLLlllgafgKSAQFPLHFWLPDAMEGPTPVSALLHAatmvKAgvyllARLSP--LFALS-----PVWLTVVAIig 282

                        170       180       190
                 ....*....|....*....|....*....|....*.
gi 674280730 160 ASTAL-GGWAGLNQTQTRKILAFSSISHLGWMTVIL 194
Cdd:COG1009  283 AITALfAALIALAQTDIKRVLAYSTVSQLGYMFLAL 318
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 34-298 3.81e-04

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 42.29  E-value: 3.81e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674280730  34 EINTLAILPLISKSHHpRAIEAATKYFLVQAAASTLLLFSSMTNAWNTGQWDITQLTHPMS-----------CMLLTTAI 102
Cdd:PRK08668 128 EIMTFSSFMMVPMGKK-ESRKASLKYFVLSAIGAYAMLYAIFLIYAKTGTFDFADISQGLIndtstgfalivFLFLLAFG 206

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674280730 103 SMKLGLVPFHFWFPEVLQG-----TSLITGLLLATALKFPPTTLFLLTSSSLNPTLLTLMAIA------------STALG 165
Cdd:PRK08668 207 VAKAGIFPLHVWAPDAYSEapqsfSAVLSGQLSKLGAYGFLLVLYVLPGTKLFSEFGTYRGVPlfnyilawlgniSIIVG 286

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674280730 166 GWAGLNQTQTRKILAFSSISHLGWmtvILLYNPKLTLITF-------YLYCLMTVPIFLTLNTI----KTLKLATMSTAW 234
Cdd:PRK08668 287 TLMAILQEDIKKLIAYSSVANGGY---ILVGLGLGTSLGFagglfhvFNHALFKGLFFLIFAAViyrtGTTKISEMGGLI 363

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 674280730 235 TKIPSLTATLLLMLLSLAGLPPLTGFLPKWLIIQELTKQEMTLTATIIALLSLLGLFFYLRLAY 298
Cdd:PRK08668 364 EKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGMPITAFMAFFGSIGSFLYVFRPLA 427
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-189 4.65e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 41.86  E-value: 4.65e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674280730  33 LEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLLLFSSMTNAWNTGQWDITQLTH--PMSCMLLTTAISMKLGLVP 110
Cdd:PRK07234 123 LEVLSIATFLLVAYPRTDRAIWVGLRYLFYSNVAMLFYLIGAVLVYQANGTFAFSGLATadPEAFALIALGLLVKGGIFV 202

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674280730 111 FHFWFPEVLQGTSLITGLLLATALK----FPPTTLFLLTSSSLNPtlLTLMAIASTALGGWAGLNQTQTRKILAFSSISH 186
Cdd:PRK07234 203 SGLWLPLTHSEAEPPVSALLSGVVVkagvFPLVRCALDVPGLDLI--VRIFGVGTALLGVLFALLEKDLKRMLAFSTISQ 280


                 ...
gi 674280730 187 LGW 189
Cdd:PRK07234 281 LGF 283
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
55-190 5.28e-04

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 41.61  E-value: 5.28e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674280730  55 AATKYFLVQAAASTLLLFSSMTNAWNTG--QWDITQL---THPMSCMLLTTA-----ISMKLGLVPFHFWFPEVLQGTSL 124
Cdd:PRK06473 158 AATKFLLYTAISGILILVSFLGLVWLSGasSFDYEPLrshTLPLSTQLLLLApilvgFGIKIPLVPFHTWLPDAHVEAST 237

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 674280730 125 ITGLLLATALKFPPT--------TLFLLTSSSLNPTLLTLMAIaSTALGGWAGLNQTQTRKILAFSSISHLGWM 190
Cdd:PRK06473 238 PVSVLLAGVLLKLGTygllrfgvGLFPEAWVYLAPWLATWAVV-SVLYGASCAIAQKDMKKMVAYSSIGHMGYI 310
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-267 1.14e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 40.49  E-value: 1.14e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674280730  33 LEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLLLFS-----SMTNAWNTGqwDITQLTHPM--------SCMLLT 99
Cdd:PRK12662 139 LEISSISSYVLVAMGRDKKALVAAFEYLIIGTIGATFYLIGigflyAITGTLNMG--DMFLIIQDLptnraiqiGVLFIM 216

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674280730 100 TAISMKLGLVPFHFWFPEVL-QGTSLITGLLLATALKFPPTTL-----------FLLTSSSLNPTLLTLMAIAsTALGGW 167
Cdd:PRK12662 217 VGLFIKAALFPFHKWLIQAYsEAPSFISVFFSGTSTKVMIYLIirivydvfkanFVFTTLPFNNVFMILAALA-IVFGSV 295

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674280730 168 AGLNQTQTRKILAFSSISHLGWMTVILLYNPKLTLITFYLY----CLMTVPIFLTLNTIK----TLKLATMSTAWTKIPS 239
Cdd:PRK12662 296 LAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYivnhSIVKSALFMVSGSISyhfgTTKLEDCLNLWKSMPK 375

                        250       260
                 ....*....|....*....|....*...
gi 674280730 240 LTATLLLMLLSLAGLPPLTGFLPKWLII 267
Cdd:PRK12662 376 ITLAFVLLSLSLIGMPPTSGFVAKWYIL 403
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 55-188 1.55e-03

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 40.40  E-value: 1.55e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674280730  55 AATKYFLVQAAASTLLLFSSMTNAWNTGQ--WDITQLTH---PMSCMLLT-----TAISMKLGLVPFHFWFPEVLQGTSL 124
Cdd:PRK12561 138 AATKFILYTALASIFILVAGLALALSGDTftFDLAELGAksyPLALELLLyagflIAFGVKLPIFPLHTWLPDAHGEASA 217

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 674280730 125 ITGLLLA-TALKFPPTTLFLLTSSSLN-------PTLLTLmAIASTALGGWAGLNQTQTRKILAFSSISHLG 188
Cdd:PRK12561 218 PVSMILAgVLLKMGGYALIRFNVQMLPdahvyfaPALAIL-GVVNIIYGALNAFAQDNVKRRLAYSSVSHMG 288
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
53-298 1.62e-03

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 40.32  E-value: 1.62e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674280730  53 IEAATKYFLVQAAASTLLLFSSMTNAWNTGQWDITQL-----------THPMSCMLLTTAISMKLGLVPFhFWFPEV--- 118
Cdd:PRK12663 157 LRGAIKYVVLNLIGSWLFLLGIGLLYGTFGTLNMAHIamrlndmgdtaTLTTIALLFLLAFGMKAALFPF-MWLPAAyht 235

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674280730 119 --LQGTSLITGLLL---ATALkFPPTTLFLLTSSSLNPTLLTLMAIASTALGGWAGLNQTQTRKILAFSSISHLGWMTV- 192
Cdd:PRK12663 236 pnTEVAALFAALLTkvgIYAL-IRVFTLLFPQERELLHPLLATMAAITMVIGALGALAYKDIRRIAGYQVISSIGFILLg 314

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674280730 193 ILLYNPK-LTLITFYLYCLMTVP--IFLTLNTIKTL----KLATMSTAWTKIPSLTATLLLMLLSLAGLPPLTGFLPKWL 265
Cdd:PRK12663 315 LALGTPAgINGAIFYLVHDMVVKtaLFLIAGSLVRLtgyrSLQYLGGLYRKEPLFGALFLILIFAIGGLPPFSGFWGKVL 394

                        250       260       270
                 ....*....|....*....|....*....|....*.
gi 674280730 266 IIQ-ELTKQEMTLTATIIA--LLSLLGLFFYLRLAY 298
Cdd:PRK12663 395 LVQgALDNGAYILLALMLItsLITMYSLFRIFFLAY 430
PRK12650 PRK12650
DUF4040 family protein;
29-304 1.83e-03

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 40.41  E-value: 1.83e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674280730  29 AWaglEINTLAILPLISKSHhPRAIEAATKYFLVQAAASTLLLFSSMTNAWNTGQWDITQLTHPMS-----------CML 97
Cdd:PRK12650 138 AW---ELVSLASFFLIARSG-SGGEAGSIRTLILTFFGGLTLLAAVAIAATQTGTTSLSGILHSDVwaekpglttvvAVL 213

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674280730  98 LTTAISMKLGLVPFHFWFPEVLQGTSLITGLLLATALKFPPTTLFLLTSSSL--NPT---LLTLMAIASTALGGWAGLNQ 172
Cdd:PRK12650 214 IAVAAFTKSAQFPFHFWLPEAMAAITPVSAFLHAAAVVKAGIYLLLRFSPVFhdVAVwnwLLIIVGMITALMGAVFAVQK 293

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674280730 173 TQTRKILAFSSISHLGWM-TVILLYNP-KLT--LITFYLYCLMTVPIFLTLNTIK----TLKLATMSTAWTKIPSLTATL 244
Cdd:PRK12650 294 TDLKKLTAYSTVSQLGWIvATIGVGTPfALTaaVVHTLAHALFKSSLFMLIGVVDhqagTRDIRRLGSLWRRMPFTFVSV 373

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 674280730 245 LLMLLSLAGLPPLTGFLPKWLIIQELTKQEMTlTATIIALLSLLGLFFYLRLAYCATITL 304
Cdd:PRK12650 374 TIAALSMAAVPPLFGFVSKEGMLTAFLEAPGG-NAGVVLLLVGAALGAVFTFAYSARLVL 432
PRK07376 PRK07376
NADH-quinone oxidoreductase subunit L;
52-190 2.96e-03

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236005 [Multi-domain]  Cd Length: 673  Bit Score: 39.62  E-value: 2.96e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674280730  52 AIEAATKYFLVQAAASTLLLFSSMTNAWNTGQWDITQLTHPMSCMLLTTAISMKLGLV----------------PFHFWF 115
Cdd:PRK07376 171 AADAAQKAFVVNRVGDFGLLLGILGLFWATGSFDFDGIADRLSELVSSGAVSGWLALLlcilvflgpmaksaqfPLHVWL 250

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674280730 116 PEVLQGTSLITGLLLAT----------ALKFPPTTLFlltssslnPTLLTLMAI--ASTA-LGGWAGLNQTQTRKILAFS 182
Cdd:PRK07376 251 PDAMEGPTPISALIHAAtmvaagvflvARMYPVFEQF--------PAVMTVIAWtgAITAfLGASIALTQNDIKKGLAYS 322


                 ....*...
gi 674280730 183 SISHLGWM 190
Cdd:PRK07376 323 TISQLGYM 330
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 101-195 4.12e-03

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 38.75  E-value: 4.12e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674280730 101 AISMKLGLVPFHFWFPEV-----LQGTSLITGLLLATA------LKFPpttLFLLTSSSLNPTLLTlMAIASTALGGWAG 169
Cdd:MTH00226 239 AMAVKIPIFPFHIWLPKAhveapVAGSVLLAGILLKLGgyglvrLSWP---ILPLGAQNLAPAVIA-MGIVGIVYGSFAT 314

                         90       100
                 ....*....|....*....|....*.
gi 674280730 170 LNQTQTRKILAFSSISHLGWMTVILL 195
Cdd:MTH00226 315 CRQIDVKRLVAYSSVAHMGLVSITLV 340
ND5 MTH00207
NADH dehydrogenase subunit 5; Provisional
 80-268 5.21e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 164753 [Multi-domain]  Cd Length: 572  Bit Score: 38.59  E-value: 5.21e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674280730  80 NTGQWDITQLTHPMSCMLLTTAISM----KLGLVPFHFWFPEVLQGTSLITGLL----LATA-----LKFPPttlFLLTS 146
Cdd:MTH00207 163 NQGHWSITNMWQTDMNNYIALSIMIaamtKSAQMPFSSWLPAAMAAPTPVSALVhsstLVTAgvfllIRFYP---FLSST 239

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674280730 147 SSLNPTLLtLMAIASTALGGWAGLNQTQTRKILAFSSISHLGWMTVIL-LYNPKLTLITFYLYCLMTVPIFLTLNTI--- 222
Cdd:MTH00207 240 YWFNPALL-LTASLTMLMAGLSAMTECDMKKIIALSTLSQLGVMMASLgLGMPKLALFHLITHALFKALLFVCAGSLihs 318

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*...
gi 674280730 223 --KTLKLATMSTAWTKIPSLTATLLLMLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:MTH00207 319 hhHSQDLRTMGNLTNQMPLTTSCLLIANLALCGSPFLSGFYSKDLILE 366
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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