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Conserved domains on  [gi|674101049|gb|AIK97531|]
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NADH dehydroxygenase subunit 5, partial (mitochondrion) [Trimerotropis saxatilis]

Protein Classification

NADH dehydrogenase subunit 5( domain architecture ID 11475935)

NADH dehydrogenase subunit 5 (ND5/NADH5) is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain; the immediate electron acceptor for the enzyme is believed to be ubiquinone

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
 1-318 2.26e-124

NADH dehydrogenase subunit 5; Provisional


:

Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 367.54  E-value: 2.26e-124
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101049   1 LLLIGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYYGLAFFHLLTHALFKALLFMCAGSMIHNLKDSQDI 80
Cdd:MTH00165 246 LLLISLLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSLGFPKLAFFHLLTHALFKALLFLCAGSIIHNMSNSQDI 325

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101049  81 RFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVCLSWVNFLIFFLYFISTGLTASYSFRLFYYSMMGDNN 160
Cdd:MTH00165 326 RFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMVSMSNLNFFIFFLFFFSTGLTVSYSFRLIYYSMSGDFN 405

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101049 161 FYPSYFFDDKSYFISFGMIGLLFVAVFGGSFLSWLIFPVPYVIVLPWYLSVLTLFVVIVGSYLGYLISDFDYFYGLFSLS 240
Cdd:MTH00165 406 LKSLNNLSDESKFMLKSMILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLTLFVILLGGWLGYELSLMSLSYNLKSLK 485

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 674101049 241 FLSFVSFVGSMWFMPFLSTNYISYLPLKFGYNSSKSLDYGWGELLGGQGLYSFFLYLIDYIQSLYDSNFKVYLLTFIF 318
Cdd:MTH00165 486 NYKLSSFLGSMWFMPFLSTYGISYYPLNLGSLSLKSFDQGWSEYFGGQGLYNFLKKLSKLIQWLQNNNLKIYLLSFLL 563
 
Name Accession Description Interval E-value
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
 1-318 2.26e-124

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 367.54  E-value: 2.26e-124
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101049   1 LLLIGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYYGLAFFHLLTHALFKALLFMCAGSMIHNLKDSQDI 80
Cdd:MTH00165 246 LLLISLLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSLGFPKLAFFHLLTHALFKALLFLCAGSIIHNMSNSQDI 325

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101049  81 RFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVCLSWVNFLIFFLYFISTGLTASYSFRLFYYSMMGDNN 160
Cdd:MTH00165 326 RFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMVSMSNLNFFIFFLFFFSTGLTVSYSFRLIYYSMSGDFN 405

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101049 161 FYPSYFFDDKSYFISFGMIGLLFVAVFGGSFLSWLIFPVPYVIVLPWYLSVLTLFVVIVGSYLGYLISDFDYFYGLFSLS 240
Cdd:MTH00165 406 LKSLNNLSDESKFMLKSMILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLTLFVILLGGWLGYELSLMSLSYNLKSLK 485

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 674101049 241 FLSFVSFVGSMWFMPFLSTNYISYLPLKFGYNSSKSLDYGWGELLGGQGLYSFFLYLIDYIQSLYDSNFKVYLLTFIF 318
Cdd:MTH00165 486 NYKLSSFLGSMWFMPFLSTYGISYYPLNLGSLSLKSFDQGWSEYFGGQGLYNFLKKLSKLIQWLQNNNLKIYLLSFLL 563
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 1-227 1.31e-43

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 157.62  E-value: 1.31e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101049   1 LLLIGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYYGLAFFHLLTHALFKALLFMCAGSMIHNLkDSQDI 80
Cdd:COG1009  278 VAIIGAITALFAALIALAQTDIKRVLAYSTVSQLGYMFLALGVGAYVAALFHLLTHAFFKALLFLGAGSVIHAT-GTRDI 356

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101049  81 RFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE-VVCLSWVNFLIFFLYFISTGLTASYSFRLFYYSMMGDN 159
Cdd:COG1009  357 RKMGGLRKKMPITAITFLIGALSLAGIPPFAGFFSKEAILEaALEAGGLGPLLLAVALLGAFLTAFYSFRLFFLVFFGKP 436

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 674101049 160 NFYPSYFFDDKSYFISFGMIGLLFVAVFGGSFLSWL---------IFPVPYVIVLPWYLSVLTLFVVIVGSYLGYLI 227
Cdd:COG1009  437 RPKTPKHPHESPWLMTLPLVVLAVLSLVLGLLLPGLlegllapaaVLGGELHLAHGLLLNALPLLLSLLGIALGYLL 513
NADH5_C pfam06455
NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of ...
 146-318 1.30e-40

NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of several NADH dehydrogenase subunit 5 proteins and is found in conjunction with pfam00361 and pfam00662.


Pssm-ID: 368917 [Multi-domain]  Cd Length: 181  Bit Score: 139.99  E-value: 1.30e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101049  146 YSFRLFYYSMMGDNNFYPSYFFDDKSYFISFGMIGLLFVAVFGGSFLSWLIFPVPYVIVLPWYLSVLTLFVVIVGSYLGY 225
Cdd:pfam06455   1 YSFRLIYYVMTGSPRFSSLSPINENNPIMINPIKRLAIGSIIGGSLLSWLIFPKPPMMTMPLYLKLLALLVTILGLLLGL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101049  226 LISDFDYFYGLFSLSFlSFVSFVGSMWFMPFLSTNYISYLPLKFGYNSSKSLDYGWGELLGGQGLYSFFLYLIDYIQSLY 305
Cdd:pfam06455  81 ELSNLSNKQLKKSLNF-NLHSFSGSMWFFPNLSHRLIPKLSLKLGQKLAKQIDQGWSEKFGPQGIAKTLMTLSKIIQNSQ 159

                         170
                  ....*....|...
gi 674101049  306 DSNFKVYLLTFIF 318
Cdd:pfam06455 160 KGLIKIYLLSFLL 172
NDH_I_L TIGR01974
proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th ...
 3-227 9.00e-40

proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th (based on E. coli) structural gene, L, of bacterial NADH dehydrogenase I, as well as chain 5 of the corresponding mitochondrial complex I and subunit 5 (or F) of the chloroplast NAD(P)H-plastoquinone dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273905 [Multi-domain]  Cd Length: 609  Bit Score: 147.04  E-value: 9.00e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101049    3 LIGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYYGLAFFHLLTHALFKALLFMCAGSMIHNLKDSQDIRF 82
Cdd:TIGR01974 282 IIGAITALFAATVALVQNDIKRILAYSTMSQLGYMFLALGVGAYAAAIFHLMTHAFFKALLFLGAGSVIHAMHHEQDIRK 361

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101049   83 MGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVCLSWVNFLIFFLYFISTGLTASYSFRLFYYSMMGDNNFY 162
Cdd:TIGR01974 362 MGGLRKKMPVTYITFLIGSLALIGFPGFAGFFSKDLILEAAFASGTHSFLFVAGLIGAFLTAFYSFRLIFMVFHGKERHE 441

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 674101049  163 PSYFFDDKSYFISFGMIGLLFVAVFGGSFLSWLIFPVPYVIV-----------LPWYLSVLTLFVVIVGSYLGYLI 227
Cdd:TIGR01974 442 ADAHPHESPLVMLLPLIVLAVGSVFAGFFIVPLFEFLKGVLPtsaepalehhhVPALEIWSPTAVAILGILLAYLL 517
 
Name Accession Description Interval E-value
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
 1-318 2.26e-124

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 367.54  E-value: 2.26e-124
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101049   1 LLLIGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYYGLAFFHLLTHALFKALLFMCAGSMIHNLKDSQDI 80
Cdd:MTH00165 246 LLLISLLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSLGFPKLAFFHLLTHALFKALLFLCAGSIIHNMSNSQDI 325

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101049  81 RFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVCLSWVNFLIFFLYFISTGLTASYSFRLFYYSMMGDNN 160
Cdd:MTH00165 326 RFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMVSMSNLNFFIFFLFFFSTGLTVSYSFRLIYYSMSGDFN 405

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101049 161 FYPSYFFDDKSYFISFGMIGLLFVAVFGGSFLSWLIFPVPYVIVLPWYLSVLTLFVVIVGSYLGYLISDFDYFYGLFSLS 240
Cdd:MTH00165 406 LKSLNNLSDESKFMLKSMILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLTLFVILLGGWLGYELSLMSLSYNLKSLK 485

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 674101049 241 FLSFVSFVGSMWFMPFLSTNYISYLPLKFGYNSSKSLDYGWGELLGGQGLYSFFLYLIDYIQSLYDSNFKVYLLTFIF 318
Cdd:MTH00165 486 NYKLSSFLGSMWFMPFLSTYGISYYPLNLGSLSLKSFDQGWSEYFGGQGLYNFLKKLSKLIQWLQNNNLKIYLLSFLL 563
ND5 MTH00209
NADH dehydrogenase subunit 5; Provisional
 1-318 1.32e-80

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177252 [Multi-domain]  Cd Length: 564  Bit Score: 254.96  E-value: 1.32e-80
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101049   1 LLLIGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYYGLAFFHLLTHALFKALLFMCAGSMIHNLKDSQDI 80
Cdd:MTH00209 242 LLLLGSLTTLMASMSANVESDLKKIIALSTLSQLGLMMCSLGLNQPELAFFHLITHALFKALLFICAGNIIHSHGHSQDI 321

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101049  81 RFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVCLSWVNFLIFFLYFISTGLTASYSFRLFYYSMMGDNN 160
Cdd:MTH00209 322 RMVGNLWYQMPITSICLNIANLSLCGIPFLAGFYSKDLILESMLESNMPIMTLILMFLSTSLTAAYSMRLSYFSLWGPNS 401

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101049 161 FYPSYFFDDKSYFISFGMIGLLFVAVFGGSFLSWLIFPVPYVIVLPWYLSVLTLFVVIVGSYLGYLISDfdyfYGLFSLS 240
Cdd:MTH00209 402 SKSLNSSFDQNKLNLKPMLVLTLGSITGGSVMSWVMVPSVNSVVLPWFLKLLPIMLILFGVLLMYMVLK----KNFFLIK 477

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 674101049 241 FLSFVSFVGSMWFMPFLSTNYISYLPLKFGYNSSKSLDYGWGELLGGQGLYSFFLYLIDYIQSLYDSNFKVYLLTFIF 318
Cdd:MTH00209 478 GYKVNYFLSQMWFLPDLSSQPVNKFTMKLSKTMLKLLDQGWVEKMSGQGSFKVLKKSSKLSQIIQNNSLKLFVTFMML 555
ND5 MTH00151
NADH dehydrogenase subunit 5; Provisional
 1-318 3.33e-79

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214436 [Multi-domain]  Cd Length: 565  Bit Score: 251.30  E-value: 3.33e-79
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101049   1 LLLIGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYYGLAFFHLLTHALFKALLFMCAGSMIHNLKDSQDI 80
Cdd:MTH00151 243 LLFISLLTLLMAGISACYENDLKKIIALSTLSQLGVMMFSLGLGMPSLALFHLYTHALFKALLFLCAGSIIHSSSGTQDI 322

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101049  81 RFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVCLSWVNFLIFFLYFISTGLTASYSFRLFYYSMMGDNN 160
Cdd:MTH00151 323 RLLGSLFLSLPLTSGCLNISSLSLCGAPFLSGFYSKDLILESSLMSPTSLLMVLLMFVGVGLTALYSARLSFCLVWGSMK 402

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101049 161 FYPSYFFDDKSYFISFGMIGLLFVAVFGGSFLSWLIFPVPYVIVLPWYLSVLTLFVVIVGSYLGYLISDFDYFYGLFSLS 240
Cdd:MTH00151 403 SSSLSSKSDEDFYVSLPMLLLSLGALIGGKLLQSLFEGFSEEFFLPSYLKLLIGFVILLGLFLSFGFWDSGFSSSKMVKL 482

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 674101049 241 flsfVSFVGSMWFMPFLSTNYISYLPLKFGYNSSKSLDYGWGELLGGQGLYSFFLYLIDYIQSLYDSNFKVYLLTFIF 318
Cdd:MTH00151 483 ----SFFFSSMWFLSPLSSQPLKSLSLKLSNSSMKSLDMGWLEILGGQGVFKANKSFSVLNESWPVKWFNFFIGLILL 556
ND5 MTH00207
NADH dehydrogenase subunit 5; Provisional
 1-294 7.04e-77

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 164753 [Multi-domain]  Cd Length: 572  Bit Score: 245.44  E-value: 7.04e-77
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101049   1 LLLIGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYYGLAFFHLLTHALFKALLFMCAGSMIHNLKDSQDI 80
Cdd:MTH00207 246 LLLTASLTMLMAGLSAMTECDMKKIIALSTLSQLGVMMASLGLGMPKLALFHLITHALFKALLFVCAGSLIHSHHHSQDL 325

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101049  81 RFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVCLSWVNFLIFFLYFISTGLTASYSFRLFYYSMMGDNN 160
Cdd:MTH00207 326 RTMGNLTNQMPLTTSCLLIANLALCGSPFLSGFYSKDLILESSLFYPHNSLMILMIFLATALTAAYSTRFTLAVLWSPNS 405

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101049 161 FYPSYFFDDKSYFISFGMIGLLFVAVFGGSFLSWLIFPVPYVIVLPWYLSVLTLFVVIVGSYLGYLISDFDYFYGLFSLS 240
Cdd:MTH00207 406 SSPYHHLEDEDKSLTTPMLLLTLGAITSGSALNWWLPTPQEEPILPLQYKLLPLLVVTLGALLAWLFTTPNITKTPLLIN 485

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....
gi 674101049 241 FLSFVSFVGSMWFMPFLSTNYISYLPLKFGYNSSKSLDYGWGELLGGQGLYSFF 294
Cdd:MTH00207 486 NPLSHFASCLMWFLVPLSSQFIMSTPMNLSHNYLKLLDQGWLEMLGAQGTFKMF 539
ND5 MTH00211
NADH dehydrogenase subunit 5; Provisional
 1-318 6.39e-61

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214459 [Multi-domain]  Cd Length: 597  Bit Score: 204.03  E-value: 6.39e-61
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101049   1 LLLIGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYYGLAFFHLLTHALFKALLFMCAGSMIHNLKDSQDI 80
Cdd:MTH00211 271 VLLLGALTMLFGALCALTQNDIKKIVAFSTTSQLGLMMVTLGLNQPQLAFLHICTHAFFKAMLFMCSGSIIHGLNNEQDI 350

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101049  81 RFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVCLSWVNFLIFFLYFISTGLTASYSFRLFYYSMMGDNN 160
Cdd:MTH00211 351 RKMGGLSKNLPFTSSCLFLGSLALMGFPFLSGFFSKDLILESMNGSYLNAWALLLTLLATSLTAAYSFRLIFLSLGGYPR 430

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101049 161 FYPSYFFDDKSYFISFGMIGLLFVAVFGGSFLSWLIFPVPYVIV-LPWYLSVLTLFVVIVGSYLGylisdFDYFYGLFSL 239
Cdd:MTH00211 431 FLSLSPINENYKLLKNPLKRLALGSILAGFIITSNLPPEKPEILsLPFLLKLMPLLVTIVGLLLG-----LELVNLTHKQ 505

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101049 240 SFLSFVSFVGSMWFMPFLSTNYISYLPLKFG-YNSSKSLDYGWGELLGGQGLYSFFLYLIDYIQSLYDSNFKVYLLTFIF 318
Cdd:MTH00211 506 LKTSTLSFSNMLGYYPPIIHRLLPKLSLKWGqTLSTHLMDLGWYEKLGPKGLGVNQKKLIKLVTSPQQGLIKSYLALLLL 585
ND5 MTH00208
NADH dehydrogenase subunit 5; Provisional
 2-318 2.89e-58

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177251 [Multi-domain]  Cd Length: 628  Bit Score: 197.50  E-value: 2.89e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101049   2 LLIGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYYGLAFFHLLTHALFKALLFMCAGSMIHNLKDSQDIR 81
Cdd:MTH00208 304 LILGSLTALFAASTAISQHDIKKIIAYSTTSQLGLMVVAIGLNQPNLALFHICTHAFFKAMLFLCSGSIIHSLNNEQDLR 383

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101049  82 FMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVCLSWVNFLIFFLYFISTGLTASYSFRLFYYSMMGDNNF 161
Cdd:MTH00208 384 KMGGLSFLLPVTSSCIILGSLALMGTPFLAGFYSKDLILEAGLASISNLLSIILALIATLLTAVYSFRIIFFCFLNNPSF 463

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101049 162 YPSYFFDDKSYFISFGMIGLLFVAVFGGSFLSWLIFPVPyVIVLPWYLSVLTLFVVIVGSYLGYLISdfdYFYGLFSLSF 241
Cdd:MTH00208 464 SPLSPISEENPNLTNPLLRLAIGTIISGWFFSNFVFNLP-PLTLPLILKSLPLIVTIIGAAFSFSFL---LSLSSNPINS 539

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 674101049 242 LSFVSFVGSMWFMPFLSTNYISYLPLKFGYNSSKSLDYGWGELLGGQGLYSFFLYLIDYIQSLYDSNFKVYLLTFIF 318
Cdd:MTH00208 540 NFFSFLSNQWFFVNISHSIIISFSFFTSLFGSTRTLDRGWSENIGPQGIGNTSSTLSKSYQLTQTGYIKQYLLSSTL 616
ND5 MTH00004
NADH dehydrogenase subunit 5; Validated
 2-163 4.36e-52

NADH dehydrogenase subunit 5; Validated


Pssm-ID: 214398 [Multi-domain]  Cd Length: 602  Bit Score: 180.74  E-value: 4.36e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101049   2 LLIGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYYGLAFFHLLTHALFKALLFMCAGSMIHNLKDSQDIR 81
Cdd:MTH00004 277 LCLGALTTLFAATCALTQNDIKKIIAFSTSSQLGLMMVTIGLNQPQLAFLHISTHAFFKAMLFLCSGSIIHNLNNEQDIR 356

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101049  82 FMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVCLSWVNFLIFFLYFISTGLTASYSFRLFYYSMMGDNNF 161
Cdd:MTH00004 357 KMGGLQKTLPITSSCLTIGNLALMGTPFLSGFYSKDTIIETLNTSYLNAWALLLTLLATSFTAAYSLRMILLVQTGFPRT 436


                 ..
gi 674101049 162 YP 163
Cdd:MTH00004 437 PP 438
ND5 MTH00066
NADH dehydrogenase subunit 5; Provisional
 2-318 4.43e-50

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214416 [Multi-domain]  Cd Length: 598  Bit Score: 175.10  E-value: 4.43e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101049   2 LLIGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYYGLAFFHLLTHALFKALLFMCAGSMIHNLKDSQDIR 81
Cdd:MTH00066 275 LCLGALTTLFTAACALTQNDIKKIVAFSTSSQLGLMMVTIGLNQPQLAFFHICTHAFFKAMLFLCSGSIIHSLNDEQDIR 354

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101049  82 FMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVCLSWVNFLIFFLYFISTGLTASYSFRLFYYSMMGDNNF 161
Cdd:MTH00066 355 KMGGLQKALPITTSCLTIGSLALTGTPFLAGFFSKDAIIEAMNTSNLNSWALILTLIATSFTAVYSFRIIYFSSMKFPRS 434

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101049 162 YPSYFFDDKSYFISFGMIGLLFVAVFGGSFLSWLIFPV-PYVIVLPWYLSVLTLFVVIVGSYLGYLISDFDYFYGLFSLS 240
Cdd:MTH00066 435 LPLSPINENNPLIINPIKRLAWGSIIAGLLIIFNILPMkPQILTMPTFMKLAALLVTLLGLLIALDLAKITSKTTPKTKM 514

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 674101049 241 FlsfvSFVGSMWFMPFLSTNYISYLPLKFGYN-SSKSLDYGWGELLGGQGLYSFFLYLIDYIQSLYDSNFKVYLLTFIF 318
Cdd:MTH00066 515 H----SFSNLLAFFPTIIHRLSPKTNLNSGQNiATHLTDMTWYEKSGPKGLTNQQLPPIKTITNIQTGLIKTYLTLFLI 589
ND5 MTH00108
NADH dehydrogenase subunit 5; Provisional
 8-220 2.19e-46

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177170 [Multi-domain]  Cd Length: 602  Bit Score: 165.03  E-value: 2.19e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101049   8 TMFMAgLGANFEFDLKSIIALSTLSQLGLMMSILSMGYYGLAFFHLLTHALFKALLFMCAGSMIHNLKDSQDIRFMGSIV 87
Cdd:MTH00108 285 TLFTA-ICALTQNDIKKIVAFSTSSQLGLMMVTIGINQPHLAFLHICTHAFFKAMLFMCSGSIIHNLNDEQDIRKMGGLF 363

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101049  88 NFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVCLSWVNFLIFFLYFISTGLTASYSFRLFYYSMMGDNNFYPSYFF 167
Cdd:MTH00108 364 KTLPFTSTALIIGSLALTGMPFLTGFYSKDLIIEAANTSYTNAWALLITLIATSLTAAYSTRIIFFALLGQPRFPPLITI 443

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 674101049 168 DDKSYFISFGMIGLLFVAVFGGSFLSWLIFP--VPyVIVLPWYLSVLTLFVVIVG 220
Cdd:MTH00108 444 NENNPLLINPIKRLLLGSIFAGFLISNNIPPttIP-QMTMPLYLKLTALAVTILG 497
ND5 MTH00137
NADH dehydrogenase subunit 5; Provisional
 21-163 2.43e-44

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214428 [Multi-domain]  Cd Length: 611  Bit Score: 159.61  E-value: 2.43e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101049  21 DLKSIIALSTLSQLGLMMSILSMGYYGLAFFHLLTHALFKALLFMCAGSMIHNLKDSQDIRFMGSIVNFMPLTSVCFNVS 100
Cdd:MTH00137 302 DIKKIVAFSTSSQLGLMMVTIGLNQPQLAFLHICTHAFFKAMLFLCSGSIIHSLNDEQDIRKMGGLHHLTPFTSSCLTIG 381

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 674101049 101 SLSLCGMPFLAGFYSKDLILEVVCLSWVNFLIFFLYFISTGLTASYSFRLFYYSMMGDNNFYP 163
Cdd:MTH00137 382 SLALTGTPFLAGFFSKDAIIEALNTSHLNAWALTLTLIATSFTAVYSLRVVFFVSMGHPRFNP 444
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 1-227 1.31e-43

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 157.62  E-value: 1.31e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101049   1 LLLIGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYYGLAFFHLLTHALFKALLFMCAGSMIHNLkDSQDI 80
Cdd:COG1009  278 VAIIGAITALFAALIALAQTDIKRVLAYSTVSQLGYMFLALGVGAYVAALFHLLTHAFFKALLFLGAGSVIHAT-GTRDI 356

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101049  81 RFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE-VVCLSWVNFLIFFLYFISTGLTASYSFRLFYYSMMGDN 159
Cdd:COG1009  357 RKMGGLRKKMPITAITFLIGALSLAGIPPFAGFFSKEAILEaALEAGGLGPLLLAVALLGAFLTAFYSFRLFFLVFFGKP 436

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 674101049 160 NFYPSYFFDDKSYFISFGMIGLLFVAVFGGSFLSWL---------IFPVPYVIVLPWYLSVLTLFVVIVGSYLGYLI 227
Cdd:COG1009  437 RPKTPKHPHESPWLMTLPLVVLAVLSLVLGLLLPGLlegllapaaVLGGELHLAHGLLLNALPLLLSLLGIALGYLL 513
ND5 MTH00210
NADH dehydrogenase subunit 5; Provisional
 3-318 3.69e-41

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177253 [Multi-domain]  Cd Length: 616  Bit Score: 150.93  E-value: 3.69e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101049   3 LIGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYYGLAFFHLLTHALFKALLFMCAGSMIHNLKDSQDIRF 82
Cdd:MTH00210 280 ILGALTAFFAATVGVVQNDLKKVIAYSTCSQLGYMVMVCGISNYSTSLFHLMNHAFFKALLFLSAGSVIHAVSDEQDMRK 359

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101049  83 MGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVCLSWVNFLIFFLYFISTGLTASYSFRLFYYSMMGDNNFY 162
Cdd:MTH00210 360 MGGLIKSIPFTYVMILIGSLSLMGFPYLTGFYSKDLILELTYDKYYIAFAYWLGSFSALLTAFYSIRLIYLTFITNTNSK 439

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101049 163 PSYFF--DDKSYFISFGMIGLLFVAVFGGSFLSWLIFPVPYVIVLPWYLSVLTLFVVIVGSYLGYLISDFDYFY------ 234
Cdd:MTH00210 440 KEVFIgvHESSWNITFPLLLLAFGSIFVGYLGKEVVLSNVIPPIVPNSIKMIPLLFSLLGALLAFVIYNSMVFLikisrr 519

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101049 235 GLFSLSFLSFVSFVGSMWFMPFLSTNYISYLPLKFGYN-SSKSLDYGWGELLGGQGLYSFFLYLIDYIQSLYDSNFKVYL 313
Cdd:MTH00210 520 GVSIRLYHVIYTFLNSAWQFNYVINHFIVKNIWKFGHLiTYRIIDRGLLEIIGPRGISKVLIKLTQKISNLQSGMVFNYA 599


                 ....*
gi 674101049 314 LTFIF 318
Cdd:MTH00210 600 LIMII 604
NADH5_C pfam06455
NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of ...
 146-318 1.30e-40

NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of several NADH dehydrogenase subunit 5 proteins and is found in conjunction with pfam00361 and pfam00662.


Pssm-ID: 368917 [Multi-domain]  Cd Length: 181  Bit Score: 139.99  E-value: 1.30e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101049  146 YSFRLFYYSMMGDNNFYPSYFFDDKSYFISFGMIGLLFVAVFGGSFLSWLIFPVPYVIVLPWYLSVLTLFVVIVGSYLGY 225
Cdd:pfam06455   1 YSFRLIYYVMTGSPRFSSLSPINENNPIMINPIKRLAIGSIIGGSLLSWLIFPKPPMMTMPLYLKLLALLVTILGLLLGL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101049  226 LISDFDYFYGLFSLSFlSFVSFVGSMWFMPFLSTNYISYLPLKFGYNSSKSLDYGWGELLGGQGLYSFFLYLIDYIQSLY 305
Cdd:pfam06455  81 ELSNLSNKQLKKSLNF-NLHSFSGSMWFFPNLSHRLIPKLSLKLGQKLAKQIDQGWSEKFGPQGIAKTLMTLSKIIQNSQ 159

                         170
                  ....*....|...
gi 674101049  306 DSNFKVYLLTFIF 318
Cdd:pfam06455 160 KGLIKIYLLSFLL 172
NDH_I_L TIGR01974
proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th ...
 3-227 9.00e-40

proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th (based on E. coli) structural gene, L, of bacterial NADH dehydrogenase I, as well as chain 5 of the corresponding mitochondrial complex I and subunit 5 (or F) of the chloroplast NAD(P)H-plastoquinone dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273905 [Multi-domain]  Cd Length: 609  Bit Score: 147.04  E-value: 9.00e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101049    3 LIGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYYGLAFFHLLTHALFKALLFMCAGSMIHNLKDSQDIRF 82
Cdd:TIGR01974 282 IIGAITALFAATVALVQNDIKRILAYSTMSQLGYMFLALGVGAYAAAIFHLMTHAFFKALLFLGAGSVIHAMHHEQDIRK 361

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101049   83 MGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVCLSWVNFLIFFLYFISTGLTASYSFRLFYYSMMGDNNFY 162
Cdd:TIGR01974 362 MGGLRKKMPVTYITFLIGSLALIGFPGFAGFFSKDLILEAAFASGTHSFLFVAGLIGAFLTAFYSFRLIFMVFHGKERHE 441

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 674101049  163 PSYFFDDKSYFISFGMIGLLFVAVFGGSFLSWLIFPVPYVIV-----------LPWYLSVLTLFVVIVGSYLGYLI 227
Cdd:TIGR01974 442 ADAHPHESPLVMLLPLIVLAVGSVFAGFFIVPLFEFLKGVLPtsaepalehhhVPALEIWSPTAVAILGILLAYLL 517
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
 3-305 1.59e-39

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 146.38  E-value: 1.59e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101049   3 LIGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYYGLAFFHLLTHALFKALLFMCAGSMIHNLKDSQDIRF 82
Cdd:MTH00020 279 IVGSLTVFFAATVGLVQNDLKKVIAYSTCSQLGYMVVACGLSHYSISLFHLMNHAFFKALLFLSAGSVIHALSDEQDMRK 358

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101049  83 MGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVCLSWVNFLIFFLYFISTGLTASYSFRLFYYSMMGDNNFY 162
Cdd:MTH00020 359 MGGLISFLPLTYIFFLIGSLSLMGFPYLTGFYSKDLILELAFGQYYLIFAYWLGCFSALLTAFYSIRLIYLTFLSNTNLK 438

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101049 163 PSYFFD--DKSYFISFGMIGLLFVAVFGGSFLSWLI-------FPVPYVIV--LPWYLSVLTLFVVIV-GSYLGYLISDF 230
Cdd:MTH00020 439 KAVFFHlhEGDWNLLLPLGILALGSIFVGYLAKEMIwsfqitlPPIVPLSIklLPVFLSLGGIGLVIIlYFYSSKTFRVP 518

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 674101049 231 DYFYGLFSLSFLsfvsfvGSMWFMPFLSTNYISYLPLKFGYN-SSKSLDYGWGELLGGQGLYSFFLYLIDYIQSLY 305
Cdd:MTH00020 519 FSFIGRNSYTFL------GSAWQFNYILNYFLIKKIWKGGHLiSYRTIDKGVLELVGPKGISNFLIILTQGLSSLQ 588
PRK06590 PRK06590
NADH:ubiquinone oxidoreductase subunit L; Reviewed
 4-227 8.59e-39

NADH:ubiquinone oxidoreductase subunit L; Reviewed


Pssm-ID: 235836 [Multi-domain]  Cd Length: 624  Bit Score: 144.53  E-value: 8.59e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101049   4 IGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYYGLAFFHLLTHALFKALLFMCAGSMIHNLKDSQDIRFM 83
Cdd:PRK06590 287 VGAVTALFAAFIGLVQTDIKRVLAYSTMSQLGYMFLALGVGAYAAAIFHLMTHAFFKALLFLGAGSVIHAMHHEQDIRKM 366

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101049  84 GSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVcLSWVNFLIFFLYFISTGLTASYSFRLFYYSMMG---DNN 160
Cdd:PRK06590 367 GGLRKKMPVTYATFLIGTLALIGIPPFAGFFSKDEILEAA-FANGHINLFVAGLVGAFLTAFYSFRLIFLVFHGkekEKI 445

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 674101049 161 FYPSyffdDKSYFISFGMIGLLFVAVFGG-----SFLSWLIFPVPYVIV-----LPWYLSVLTLFVVIVGSYLGYLI 227
Cdd:PRK06590 446 HHPH----ESPAVMTLPLIVLAVLSVFAGalivpPFLGVLPLTTELAHGeaehhLPVWVALLPLVVALAGIALAWLL 518
PRK07376 PRK07376
NADH-quinone oxidoreductase subunit L;
3-158 6.42e-32

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236005 [Multi-domain]  Cd Length: 673  Bit Score: 125.52  E-value: 6.42e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101049   3 LIGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYYGLAFFHLLTHALFKALLFMCAGSMIHNLKD------ 76
Cdd:PRK07376 296 WTGAITAFLGASIALTQNDIKKGLAYSTISQLGYMVMAMGCGAYSAGLFHLMTHAYFKAMLFLGSGSVIHGMEEvvghdp 375

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101049  77 --SQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVCLSwvNFLIFFLYFISTGLTASYSFRLFYYS 154
Cdd:PRK07376 376 vlAQDMRLMGGLRKYMPITAITFLIGCLAISGIPPFAGFWSKDEILGAAFEA--NPALWFVGFLTAGMTAFYMFRMYFLT 453


                 ....
gi 674101049 155 MMGD 158
Cdd:PRK07376 454 FEGE 457
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 3-317 4.14e-27

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 111.59  E-value: 4.14e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101049   3 LIGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSM-GYYGLAFFHLLTHALFKALLFMCAGSMIHNLK-DSQDI 80
Cdd:MTH00032 294 IFGALTAFFAATVGLVQNDLKKVIAYSTCSQLGYMVLIIGIeGSHNVGLFHLVNHAFFKALLFLSAGSVIHSTTvDEQDM 373

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101049  81 RFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVCL----------------------------------- 125
Cdd:MTH00032 374 RKMGGLIHSIPFTYTMMLIGSFSIMGLPYLTGFYSKDLILELTYSgrnmgipfgssllkiqgdigikkddrgsiggpegy 453

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101049 126 -SWVNFLIFFLYFISTGLTASYSFRLFYYSMMGDNNFYPSYFFDDKSYFISFGMIGLLFVAVFGGSFLSWLIFPV----- 199
Cdd:MTH00032 454 pSRGSAFAFWLGTVAALLTAFYSIRLVYITFIISPNSPKESLISSHINIVDKRVLTVLSLLCFGAIFVGYLIQDIligdi 533

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101049 200 ------PYVIVLPWYLSVLTLFVVIVGSYLGYLISDFDYFYGLFSLSFLSFVSFVGSMWFMPFLSTNYISYLPLKFG-YN 272
Cdd:MTH00032 534 ehpivpPLIKVMPTLMGLFGMGLCLWAQKGTREGELYWGFDPIGPSFLLSIYSFLGGAWQGDHLINKLVAIPLFSFGhWG 613

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*
gi 674101049 273 SSKSLDYGWGELLGGQGLYSFFLYLIDYIQSLYDSNFKVYLLTFI 317
Cdd:MTH00032 614 IYKTLDRGWLELFGPQGISTIALRVSQFISNLQSGVISRYALVLL 658
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 1-139 4.23e-27

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 107.40  E-value: 4.23e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101049    1 LLLIGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYYG---LAFFHLLTHALFKALLFMCAGSMIHNLKDS 77
Cdd:pfam00361 150 LLILAIISMLLGSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYgiqAAIFHLLTHGLFSAGLFLCAGSVIYRRVHT 229

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 674101049   78 QDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVCLSWVNFLIFFLYFIS 139
Cdd:pfam00361 230 RNIRDYGGLAKTMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
ndhF CHL00025
NADH dehydrogenase subunit 5
 3-176 1.58e-26

NADH dehydrogenase subunit 5


Pssm-ID: 214338 [Multi-domain]  Cd Length: 741  Bit Score: 109.60  E-value: 1.58e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101049   3 LIGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYYGLAFFHLLTHALFKALLFMCAGSMIHNL-------- 74
Cdd:CHL00025 296 LIGIITALLGATLALAQKDIKRGLAYSTMSQLGYMMLALGIGSYRAALFHLITHAYSKALLFLGSGSVIHSMepivgysp 375

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101049  75 KDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVvclSWVNFLIF-FLYFISTGLTASYSFRLFYY 153
Cdd:CHL00025 376 DKSQNMVLMGGLRKYMPITKTTFLLGTLSLCGIPPLACFWSKDEILND---SWLYSPIFaIIAWSTAGLTAFYMFRIYLL 452

                        170       180
                 ....*....|....*....|....*.
gi 674101049 154 SMMGD---NNFYPSYFFDDKSYFISF 176
Cdd:CHL00025 453 TFEGHlrvHFQNYSGKKNSSFYSISL 478
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 1-153 2.11e-22

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 96.75  E-value: 2.11e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101049   1 LLLIGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMG-YYGL--AFFHLLTHALFKALLFMCAGSMIHNLKdS 77
Cdd:COG0651  275 LLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGtPLGLagALFHLLNHALAKALLFLAAGAIERATG-T 353

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 674101049  78 QDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVcLSWVNFLIFFLYFISTGLTASYSFRLFYY 153
Cdd:COG0651  354 RDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAA-LEAGAWLLAAVLLLSSLLTLAYFVRIFGR 428
ND5 MTH00095
NADH dehydrogenase subunit 5; Provisional
 1-275 8.79e-19

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177158 [Multi-domain]  Cd Length: 527  Bit Score: 86.51  E-value: 8.79e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101049   1 LLLIGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYYGLAFFHLLTHALFKALLFMCAGSMIHNLKDSQDI 80
Cdd:MTH00095 230 MLLIGLFTMFFSSLSALVEEDMKKVVALSTLSQMGFSMLTFGSGLSFVSFIHLLSHALFKSCLFMQVGYLIHSNFGQQDG 309

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101049  81 RFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVCLSWVNFLIFFLYFISTGLTASYSFRLFYYSMMGDNN 160
Cdd:MTH00095 310 RNYSNNGNLPMFIQLQLLVTLFCLCGLMFTSGMVSKELILELFFFNNYMIFFSLMFFFSVFLTFGYSYRLWKSFFLSFSK 389

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101049 161 FYPSYFFDDKSYFISFGMIglLFVAVFGGSFLSWLIFPVPYVIVLPWYLSVLTLFVVIVGSYLGYLISDFDYFYGLFSLS 240
Cdd:MTH00095 390 VVNVYSSSVLMNFLSLMLV--FFSVFFLWWLNFNLLNLPSLFLYLDFYVPLFYLFMIMLFSFFFFKLLFKELKYKFFVDY 467

                        250       260       270
                 ....*....|....*....|....*....|....*
gi 674101049 241 FLSFVSFVGSMWFMPFLSTNYISYLPLKFGYNSSK 275
Cdd:MTH00095 468 FAKNVIYKLKNLKFFDLFLNKFGYKGFNFFSSFSF 502
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 1-157 1.43e-17

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 83.00  E-value: 1.43e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101049   1 LLLIGCMTMFMAGLGANFEFDLKSIIALSTLSQLG---LMMSILSMGYYGLAFFHLLTHALFKALLFMCAGSMIHNLKdS 77
Cdd:PRK08375 274 LAVLALLSMLVGSLAALGQDDVKRVLAYSTVSQMGyilLGLALLTPLALAAGLLHLLHHALMKGALFLAAGAIEVTYG-T 352

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101049  78 QDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSK-DLILEVVCLSWVNFLIFFLyfISTGLTASYSFRLFYYSMM 156
Cdd:PRK08375 353 RRLSELSGLGRRMPLTAAAFAVASLSLIGVPPTSGFVSKwYLVVGAVEAGQWLVLAVLL--ASSLLALLYFLRIWYRAFF 430


                 .
gi 674101049 157 G 157
Cdd:PRK08375 431 G 431
PRK12645 PRK12645
monovalent cation/H+ antiporter subunit A; Reviewed
 3-157 1.70e-16

monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237155 [Multi-domain]  Cd Length: 800  Bit Score: 79.97  E-value: 1.70e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101049   3 LIGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMG------------YYGLAF----FHLLTHALFKALLFMC 66
Cdd:PRK12645 279 LVGLITLFWGSLNAVKQTDLKGILAFSTVSQLGLIMSLLGIGaaslhyqgddskIYAAAItaaiFHLINHATFKGSLFMI 358

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101049  67 AGSMIHNlKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVC---------LSWVNFLIFFLYF 137
Cdd:PRK12645 359 VGIVDHE-TGTRDIRKLGGLMTIMPITFTIALIGALSMAGLPPFNGFLSKEMFFESMLnateanlfsLDTWGVLFPVIAW 437

                        170       180
                 ....*....|....*....|
gi 674101049 138 ISTGLTASYSFRLFYYSMMG 157
Cdd:PRK12645 438 VASVFTFVYSIIFIFKTFFG 457
PRK12650 PRK12650
DUF4040 family protein;
1-121 2.19e-16

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 79.70  E-value: 2.19e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101049   1 LLLIGC--MTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGY---YGLAFFHLLTHALFKALLFMCAGSMIHNlK 75
Cdd:PRK12650 273 WLLIIVgmITALMGAVFAVQKTDLKKLTAYSTVSQLGWIVATIGVGTpfaLTAAVVHTLAHALFKSSLFMLIGVVDHQ-A 351

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 674101049  76 DSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE 121
Cdd:PRK12650 352 GTRDIRRLGSLWRRMPFTFVSVTIAALSMAAVPPLFGFVSKEGMLT 397
PRK12648 PRK12648
putative monovalent cation/H+ antiporter subunit A; Reviewed
 3-149 1.44e-15

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237157 [Multi-domain]  Cd Length: 948  Bit Score: 77.15  E-value: 1.44e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101049   3 LIGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGY-YGL--AFFHLLTHALFKALLFMCAGSMIHNlKDSQD 79
Cdd:PRK12648 276 GAGLITLLLGAYFALFQHDLKGLLAYSTISHLGLITLLLGLGSpLAAvaAIFHIINHATFKASLFMAAGIIDHE-TGTRD 354

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 674101049  80 IRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDL----ILEVVCLSWVNFLIFFLYFISTGLTASYSFR 149
Cdd:PRK12648 355 MRRLSGLRRLMPITATLAMVAAAAMAGVPLLNGFLSKEMffaeTLDTHLLGSLDWLLPVAATLAGAFSVAYSLR 428
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 1-152 2.04e-15

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 76.89  E-value: 2.04e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101049   1 LLLIGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMG-----YYGLAFfhLLTHALFKALLFMCAGSMIHNlK 75
Cdd:PRK12644 270 VLVLGLATMLLGGWRALRQHDLKLILAYGTVSQLGFLTVLVGIGtrdaaLAGLAM--LLAHALFKAALFLVVGIIDHS-T 346

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101049  76 DSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVV----CLSWVNFLIFFLYFISTGLTASYSFRLF 151
Cdd:PRK12644 347 GTRDIRKLSGLGRRQPVLAVVAALAAASMAGLPPLLGFVAKEAALEAVlhdgALGPAGPVVLAGIVLGSILTVAYSLRFL 426


                 .
gi 674101049 152 Y 152
Cdd:PRK12644 427 W 427
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 1-152 3.22e-15

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 75.78  E-value: 3.22e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101049   1 LLLIGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGY-YGL--AFFHLLTHALFKALLFMCAGSMIHNLKdS 77
Cdd:PRK12667 298 LIILGAVSAIIGALMMVVQKDVKRLLAYSTISHMGYIFMGIGIGTqLGLaaALFHIINHAIAKSLLFLASGVFIHAAG-T 376

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 674101049  78 QDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVCLSwvNFLIFFLY-FISTGLTASYSFRLFY 152
Cdd:PRK12667 377 RDIDELAGLGRKMPIASFAFLIGALSLVGIPPLNGFFSKLLLFNALLES--GFYLPALVlLIASAISLVGYFRAWY 450
PRK12646 PRK12646
DUF4040 family protein;
4-121 6.93e-15

DUF4040 family protein;


Pssm-ID: 183646 [Multi-domain]  Cd Length: 800  Bit Score: 75.18  E-value: 6.93e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101049   4 IGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMG-------------YYGL----AFFHLLTHALFKALLFMC 66
Cdd:PRK12646 280 VGLITMLFGSITALKQWDLKGILAYSTISQLGMIMAMVGIGggyaqhqqdaiasIYVFvlfaALFHLMNHAIFKCALFMG 359

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 674101049  67 AGSMIHNlKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE 121
Cdd:PRK12646 360 VGIIDHE-AGTRDIRILSGMRQLFPKMNLVMTIAALSMAGVPFLNGFLSKEMFLD 413
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 1-123 3.54e-14

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 73.03  E-value: 3.54e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101049   1 LLLIGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYYGL---AFFHLLTHALFKALLFMCAGSMIHNlKDS 77
Cdd:PRK12647 262 LPLFGGLTMLTGALLAVRQTDLKLILAYSTVSALGTLVMLLGLGSELAikaAVLFLVAHSLYKGALFMVAGIIDHE-TGT 340

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 674101049  78 QDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVV 123
Cdd:PRK12647 341 RDITKLGGLRRAMPITAAAALLAALSMAGLPPLFGFLAKELIYEAL 386
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 4-121 5.82e-14

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 72.55  E-value: 5.82e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101049   4 IGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYY-------GLAFFHLLTHALFKALLFMCAGSMIHNLKd 76
Cdd:PRK12649 284 TGMITMVLAGFLAFRQTDIKAILAYSTISQLAYLMTMYGYTTYhepglgvAAATFHLLNHATFKACLFLVAGIVAHEAA- 362

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*
gi 674101049  77 SQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE 121
Cdd:PRK12649 363 TRDIRKLGGLRKEMPITFIVASIAALAMAGIPPLNGFLSKEMFYE 407
PRK07390 PRK07390
NAD(P)H-quinone oxidoreductase subunit F; Validated
 1-115 1.67e-13

NAD(P)H-quinone oxidoreductase subunit F; Validated


Pssm-ID: 236008 [Multi-domain]  Cd Length: 613  Bit Score: 70.71  E-value: 1.67e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101049   1 LLLIGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYYGLAFFHLLTHALFKALLFMCAGSMIHNlKDSQDI 80
Cdd:PRK07390 287 LIVIGTVTAIGASLVAIAQIDIKRALSYSTSAYLGLVFIAVGLQQPDIALLLLLTHAIAKALLFMSVGSIILT-TITQDL 365

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 674101049  81 RFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYS 115
Cdd:PRK07390 366 TELGGLWSRMPATTLAFLVGSAGLVALLPLGGFWA 400
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 1-157 4.79e-12

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 66.27  E-value: 4.79e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101049   1 LLLIGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYYGL---------------AFFHLLTHALFKALLFM 65
Cdd:PRK08376 290 IIILGCLTMFVGVAMAVVQKDVKRLLAYHSVSQIGYMLLGLGVGLAALgdpamasygeialagGIYHIVNHALYKALLFL 369

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101049  66 CAGSMIHNLkDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVCLswVNFLIFFLYFISTGLTAS 145
Cdd:PRK08376 370 TAGAVIYET-GTRNLNELGGLARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLIYESSAL--FNPILGVIAMIGSVLTLA 446

                        170
                 ....*....|..
gi 674101049 146 YSFRLFYYSMMG 157
Cdd:PRK08376 447 SFVKVFHTAFFG 458
PRK08377 PRK08377
NADH dehydrogenase subunit N; Validated
 1-150 5.64e-12

NADH dehydrogenase subunit N; Validated


Pssm-ID: 181406 [Multi-domain]  Cd Length: 494  Bit Score: 65.94  E-value: 5.64e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101049   1 LLLIGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYYG---LAFFHLLTHALFKALLFMCAGSMIHNLKDS 77
Cdd:PRK08377 276 VIIMATLTVFFAELSALRQKNVKRMIAYSSIGQVGMIALALALGTQAgvdAGVFHMINHAIVKALLFLAVGYVGITLGGT 355

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 674101049  78 QDIRFMGSIVNfMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILeVVCLSWVNFLIFFLYFISTGLTASYSFRL 150
Cdd:PRK08377 356 EIEKFEGLGKR-MPLTALALTIGALSTVGIPLFNVFWSKFRII-LAGLSAGYTWPVALVLGASVVEAVYYFRL 426
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
 1-186 6.62e-12

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 65.99  E-value: 6.62e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101049   1 LLLIGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMM---SILSMGYYGLAFFHLLTHALFKALLFMCAGSmIHNLKDS 77
Cdd:PRK06589 283 LIFIPIVSIFYSSLKALKTDNIKKILAYSTISQLSLALlsaFILTPKALGAAILHLVSHSFAKICLFYSMGS-IYSLKKE 361

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101049  78 QDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVCLS---WVNFLIFFLYFISTGLTASYSFRLFYys 154
Cdd:PRK06589 362 DQVDKLHGTSKSFPLISFIISISSLSLIGIPIFSGFISKFLILLAASEQnqpWLSIIVMLVVIASSILSALYLLKILS-- 439

                        170       180       190
                 ....*....|....*....|....*....|..
gi 674101049 155 mmgdNNFYPSYffdDKSYFISFGMIGLLFVAV 186
Cdd:PRK06589 440 ----SIYKPSL---SENSFITKSLPYLMQISV 464
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 1-121 8.90e-12

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 65.52  E-value: 8.90e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101049   1 LLLIGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSM----GYYGL----------AFFHLLTHALFKALLFMC 66
Cdd:PRK08667 273 ILLAGSISALLGVIYALKEHDLKGLLAYSSIENIGIILMGIGLyvifGVYGLdtlallalggALFHSLNHALFKSLLFLT 352

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 674101049  67 AGSMIHNLKDsQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE 121
Cdd:PRK08667 353 AGSVVHATGT-RNIEKMGGLVKLMPYTSALFLVGAVSIAALPPFNGFASELLLYE 406
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 1-152 2.26e-11

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 64.25  E-value: 2.26e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101049   1 LLLIGCMTMFMAGLGANFEFDLKSIIALSTLSQLG-LMMSILSMGYYGLA--FFHLLTHALFKALLFMCAGSMIHNLKDS 77
Cdd:PRK08668 275 LAWLGNISIIVGTLMAILQEDIKKLIAYSSVANGGyILVGLGLGTSLGFAggLFHVFNHALFKGLFFLIFAAVIYRTGTT 354

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 674101049  78 QdIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVcLSWVNFLIFFLYFISTGLTASYSFRLFY 152
Cdd:PRK08668 355 K-ISEMGGLIEKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEAL-ISKGMPITAFMAFFGSIGSFLYVFRPLA 427
PRK06521 PRK06521
hydrogenase 4 subunit B; Validated
 1-126 2.98e-11

hydrogenase 4 subunit B; Validated


Pssm-ID: 235820 [Multi-domain]  Cd Length: 667  Bit Score: 64.14  E-value: 2.98e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101049   1 LLLIGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMsiLSMGY------YGL----------AFFHLLTHALFKALLF 64
Cdd:PRK06521 279 VLALGAISAVLGVLYALAEHDLKRLLAYSTIENIGIIF--VGLGLamvfiaYGMpllaalaltaALYHLLNHALFKSLLF 356

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 674101049  65 MCAGSMIHNLKdSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVCLS 126
Cdd:PRK06521 357 LGAGAVLHATG-TRDMEKLGGLIRRMPWTAWAFLIGCLAISALPPLNGFVSEWLLLQSLLSS 417
PRK08042 PRK08042
formate hydrogenlyase subunit 3; Reviewed
 1-113 4.88e-11

formate hydrogenlyase subunit 3; Reviewed


Pssm-ID: 181206 [Multi-domain]  Cd Length: 593  Bit Score: 63.31  E-value: 4.88e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101049   1 LLLIGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYYGLA--------------FFHLLTHALFKALLFMC 66
Cdd:PRK08042 248 LLVLGMITAFVGGLYALMEHNIQRLLAYHTLENIGIILLGLGAGVTGIAleqpalialglvggLYHLLNHSLFKSVLFLG 327

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 674101049  67 AGSMIHNlKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGF 113
Cdd:PRK08042 328 AGSVWFR-TGHRDIEKLGGIGKKMPVISIAMLVGLMAMAALPPLNGF 373
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 1-157 2.61e-10

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 60.87  E-value: 2.61e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101049   1 LLLIGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLM-MSILSMGYYGL--AFFHLLTHALFKALLFMCAGSMIHNLKdS 77
Cdd:COG1008  278 LAALGVIGIIYGALVALAQTDLKRLIAYSSVSHMGFVlLGIFALNPLGLqgAVLQMVSHGLITAALFLLVGVLYDRTH-T 356

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101049  78 QDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILevVCLSWVNFLIFFLYFISTGLTASYSFRLFYYSMMG 157
Cdd:COG1008  357 RDIADLGGLAKRMPVLAALFLLAALASLGLPGTSGFVGEFLVL--LGAFQVNPWLAILAALGLILTAAYLLWMYQRVFFG 434
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 3-121 2.85e-10

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 60.74  E-value: 2.85e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101049   3 LIGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGyyglAFFHLlTHALFKALLFMCAGSmIHNLKDSQDIRF 82
Cdd:PRK07234 250 IFGVGTALLGVLFALLEKDLKRMLAFSTISQLGFILAAPLVG----GLYAL-AHGLVKSTLFLCAGA-LPSRNFTELISQ 323

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 674101049  83 MGSIVNFMPLTsvcfnVSSLSLCGMPFLAGFYSKDLILE 121
Cdd:PRK07234 324 MLGIGKWIPLT-----MASFSIAGFPLLAGFVSKVLTLK 357
PRK12668 PRK12668
Na(+)/H(+) antiporter subunit D;
10-120 4.14e-10

Na(+)/H(+) antiporter subunit D;


Pssm-ID: 237168 [Multi-domain]  Cd Length: 581  Bit Score: 60.68  E-value: 4.14e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101049  10 FMAGLGANF---EFDLKSIIALSTLSQLGLMMSILSMGY-YGL--AFFHLLTHALFKALLFMCAGSMIHNLKDSqDIRFM 83
Cdd:PRK12668 249 AMAVYGVFFallENDLRRLLSYHIVSQVGYMVAGIGIGTaLAIngAVAHAFNHILYKGLLFMSAGAVLYRTGTE-KLTEL 327

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 674101049  84 GSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLIL 120
Cdd:PRK12668 328 GGLYRSMPLTALFCLVGALSISAFPLFSGFVSKSMII 364
PRK06525 PRK06525
hydrogenase 4 subunit D; Validated
 1-120 1.07e-09

hydrogenase 4 subunit D; Validated


Pssm-ID: 180606 [Multi-domain]  Cd Length: 479  Bit Score: 59.22  E-value: 1.07e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101049   1 LLLIGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYYGL------AFFHLLTHALFKALLFMCAGSMIHNL 74
Cdd:PRK06525 275 GAVMAIVTLLYGFLMYLPQQDMKRLLAYSTITQLGYMFFGLSLAILGSrlalegSIAYIFNHAFAKSLFFLVAGALSYSC 354

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 674101049  75 kDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLIL 120
Cdd:PRK06525 355 -GTRLLPRLRGVLKKLPLVGVGFCVAALAITGVPPFNGFFSKFPIF 399
ND5 MTH00063
NADH dehydrogenase subunit 5; Provisional
 8-229 1.96e-09

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214414 [Multi-domain]  Cd Length: 522  Bit Score: 58.35  E-value: 1.96e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101049   8 TMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYYGLAFFHLLTHALFKALLFMCAGSMIHNLKDSQDIR-----F 82
Cdd:MTH00063 230 TIFITGVSSLFFSDLKKIVALSTCNNISWCVLYLIYGDVILSLFQLVSHGVSKCLLFMLVGDVMSGSGGSQSSNcvyssI 309

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101049  83 MGSIVNFMPLTSVCfnvssLSLCGMPFLAGFYSKDLILEVVCLSWVNFLIFFLYFISTGLTASYSFRLFYYSMMGDNNFY 162
Cdd:MTH00063 310 LYGSWNLFYLFLLV-----LGLSGVPFIGVFFSKHFLLSSFSSVVFNVSLLLVVILCVFLSYLYSFRLCLILFGVKSSLS 384

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 674101049 163 PSYFFDdksYFISFGMigllfvaVFGGSFLSWLIFP-VPYVIVLPWYLSVLTLFVVIVGSYLGYLISD 229
Cdd:MTH00063 385 SGVRFL---FFNSGLM-------VFLWLFINYYVFLlLDEVVYLGVFISLVLLLVQLLGLLVGVLFYD 442
PRK07691 PRK07691
putative monovalent cation/H+ antiporter subunit D; Reviewed
 1-163 2.03e-09

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 181085 [Multi-domain]  Cd Length: 496  Bit Score: 58.42  E-value: 2.03e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101049   1 LLLIGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLM-MSILSMGYYGL--AFFHLLTHALFKALLFMCAGSMIHnLKDS 77
Cdd:PRK07691 278 ILILALLTIIFGVIGAVAYFDIKKIIIYNIMIAVGVIlVGVAMMTESGMigAIYYLIHDMIVKAALFLLIGIMIK-ITGT 356

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101049  78 QDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVcLSWVNFLIFFLYFISTGLTASYSFRLFYYSMMG 157
Cdd:PRK07691 357 TDLKKMGGLIKRYPVLGWMFFIAALSLAGIPPLSGFYGKFFIVEGT-FEAGFYVSGIIVLLSSLLVLYSVIKIFLKGFWG 435


                 ....*.
gi 674101049 158 DNNFYP 163
Cdd:PRK07691 436 EPKGYD 441
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 21-158 3.21e-08

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 54.44  E-value: 3.21e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101049  21 DLKSIIALSTLSQLG-LMMSILSMGYYGL--AFFHLLTHALFKALLFMCAGSMIHNLKdSQDIRFMGSIVNFMPLTSVCF 97
Cdd:PRK05846 300 DIKKLIAYSSISHMGfVTLGIFAGNQLGIqgAIFQMISHGLSSAALFLLVGVLYDRLH-TRDIADYGGLAKVMPVLAAFF 378

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 674101049  98 NVSSLSLCGMPFLAGFYSKDLILevVCLSWVNFLIFFLYFISTGLTASYSFRLFYYSMMGD 158
Cdd:PRK05846 379 LFFAMASLGLPGTSGFVGEFLIL--LGSFQVNPVIAFIATTGLILAAVYSLWLYQRVMFGP 437
PRK08168 PRK08168
NADH-quinone oxidoreductase subunit L;
1-69 7.82e-07

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236171 [Multi-domain]  Cd Length: 516  Bit Score: 50.47  E-value: 7.82e-07
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 674101049   1 LLLIGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYYGLAFFHLLTHALFKALLFMCAGS 69
Cdd:PRK08168 266 LVLVGLATAVLAGLVMLTRISIKVRLAWSTVAQMGFMLLECGLGLYELALLHLVAHSLYKAHAFLSASE 334
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 1-123 9.20e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 47.04  E-value: 9.20e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101049   1 LLLIGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMG-YYGL--AFFHLLTHALFKALLFMCAGSMIHNLkDS 77
Cdd:PRK12662 282 FMILAALAIVFGSVLAILSKDIKRIFAYSSISHIGYIILAVSLNtYYGLaaAVAYIVNHSIVKSALFMVSGSISYHF-GT 360

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 674101049  78 QDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVV 123
Cdd:PRK12662 361 TKLEDCLNLWKSMPKITLAFVLLSLSLIGMPPTSGFVAKWYILDAF 406
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
 1-121 1.88e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 46.11  E-value: 1.88e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101049   1 LLLIGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGY---YGLAFFHLLTHALFKALLFMCAGsMIHNLKDS 77
Cdd:PRK12665 276 LMVVALLTMVVGILGAIAQSDIKRLLSFTLVSHIGYMVFGIALSTvagLSGAIYYVAHHITVQTTLFLVVG-LIERQAGS 354

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 674101049  78 QDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE 121
Cdd:PRK12665 355 SSLRRLGGLAKASPLLAVLFFVPALNLGGIPPFSGFIGKVALLE 398
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
1-160 2.04e-05

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 45.71  E-value: 2.04e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101049   1 LLLIGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYYGL---AFFHLLTHALFKALLFMCAGSMIHnLKDS 77
Cdd:PRK12663 275 LATMAAITMVIGALGALAYKDIRRIAGYQVISSIGFILLGLALGTPAGingAIFYLVHDMVVKTALFLIAGSLVR-LTGY 353

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101049  78 QDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVcLSWVNFLIFFLYFIsTGLTASYS-FRLFYYSMM 156
Cdd:PRK12663 354 RSLQYLGGLYRKEPLFGALFLILIFAIGGLPPFSGFWGKVLLVQGA-LDNGAYILLALMLI-TSLITMYSlFRIFFLAYW 431


                 ....
gi 674101049 157 GDNN 160
Cdd:PRK12663 432 GDKD 435
PRK08601 PRK08601
NADH dehydrogenase subunit 5; Validated
 21-69 3.92e-05

NADH dehydrogenase subunit 5; Validated


Pssm-ID: 236310 [Multi-domain]  Cd Length: 509  Bit Score: 45.03  E-value: 3.92e-05
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 674101049  21 DLKSIIALSTLSQLGLMMSILSMGYYGLAFFHLLTHALFKALLFMCAGS 69
Cdd:PRK08601 289 DYKRQLVGSTMAQMGFMLVQCALGAYSAAIIHLILHGLFKATLFLQSGS 337
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 21-120 1.27e-04

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 43.38  E-value: 1.27e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101049  21 DLKSIIALSTLSQLGLMMSILSMGYyGLAFF----HLLTHALFKALLFMCAGSMIHNlKDSQDIRFMGSIVNFMPLTSVC 96
Cdd:PRK06458 304 DIKRLFAYSSIEHMGLIAFALGIGG-PLGIFaallHMLNHSLTKSAIFFASGNVLQK-YGTRDINVIRGLLKVSPLTGWG 381

                         90       100
                 ....*....|....*....|....
gi 674101049  97 FNVSSLSLCGMPFLAGFYSKDLIL 120
Cdd:PRK06458 382 LMLGALAIAGMPPFGVFISEFLIL 405
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 1-116 3.30e-04

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 42.03  E-value: 3.30e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101049   1 LLLIGCMTMFMAGLGANFEFDLKSIIALSTLSQLG-LMMSILSMGYYGL--AFFHLLTHALFKALLFMCAGSMIHNLKDS 77
Cdd:COG1007  272 LAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGyLLLGLAAGTPLGVsaALFYLLAYLFMNLGAFAVILLLSRKGGEA 351

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 674101049  78 QDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSK 116
Cdd:COG1007  352 EEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGK 390
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 1-151 4.66e-04

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 41.66  E-value: 4.66e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101049   1 LLLIGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYYGLAF---FHLLTHALFKALLFMCAGsMIHNLKDS 77
Cdd:PRK08676 276 LIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPLALFwmlFHMLAHSLVKSGLFFSAG-ILHRQYRS 354

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 674101049  78 QDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLIL-EVVCLS-WVNFLIFFLYFISTGLTASYSFRLF 151
Cdd:PRK08676 355 DRFDRIFDVFRLQPVAAWGVILGSAAIIGMPPFPLFLSKFFILlQLGGISvWLVLAVLLLLLLAASSFAIFLLKAF 430
PRK12664 PRK12664
putative monovalent cation/H+ antiporter subunit D; Reviewed
 1-197 8.09e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237164 [Multi-domain]  Cd Length: 527  Bit Score: 40.87  E-value: 8.09e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101049   1 LLLIGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGY-----YGLAFFHLLTHALFKALLFMCAGSMIHNLK 75
Cdd:PRK12664 204 LLFLGIITAIYGIIFASLEQNIRRLLCYNVVGQMGLLIIAIGFSGssgvaIGILILQIVLSVVYQTLLFMVADSVINRTR 283

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101049  76 dSQDIRFMGSIVNfMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVCLSWVNFLIFFLYF--ISTGLTASYSFRLFYY 153
Cdd:PRK12664 284 -KFNLNRVGGLFK-MSLEAMCCIIAILNMGAFPGTAGFVSKSLITHSIDTAGLTLVLYKKLFliCSLLLFASVGLKFFWY 361

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*
gi 674101049 154 SMMGDNNFYPSYffdDKSYFIS-FGMIGLLFVAVFGGSFLSWLIF 197
Cdd:PRK12664 362 AFISKSKSKPEA---EKVYIGSkLSMIILVLICVVLGMFNSYLLF 403
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-197 2.04e-03

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 39.42  E-value: 2.04e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101049   1 LLLIGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYYGLAFFHLLTHALFKALLFMCAGSMIHNLKDSQDI 80
Cdd:MTH00160 146 IIIIIILSAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNS 225

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101049  81 RFMGSIVNFMpltsvcFNVSSLSLCGMPFLAGFYSKDLILEVVCLSWVNFLIFFLyFISTGLTASYSFRLFYYSMMGdNN 160
Cdd:MTH00160 226 NNKSKKIKFL------LFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFIL-IMSSLITLYFYLRISYSSLML-NY 297

                        170       180       190
                 ....*....|....*....|....*....|....*..
gi 674101049 161 FYPSYFFDDKSYFISFGMIGLLFVAVFGGSFLSWLIF 197
Cdd:MTH00160 298 NKNKWNLKKKKNKFSLILNFLSFISLFGLILSSLLFL 334
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
1-121 2.75e-03

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 39.24  E-value: 2.75e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101049   1 LLLIGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGY-YGL--AFFHLLTHALFKALLFMCAGSmIHNLKDS 77
Cdd:PRK06277 269 LIALSVLAMVFGVVMALLQTDYKRLLAYHAISQGGYVAAGLALGTpLGIvaGIFHAINHVIYKSALFLGAGI-VSYRTKT 347

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 674101049  78 QDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE 121
Cdd:PRK06277 348 SNLRKLGGLLPVMPVVAFMVLCAKLAISGVPPFNGFQSKLMLAQ 391
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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