NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|674101043|gb|AIK97528|]
View 

NADH dehydroxygenase subunit 5, partial (mitochondrion) [Trimerotropis pistrinaria]

Protein Classification

NADH dehydrogenase subunit 5( domain architecture ID 11475935)

NADH dehydrogenase subunit 5 (ND5/NADH5) is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain; the immediate electron acceptor for the enzyme is believed to be ubiquinone

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
 1-318 6.20e-119

NADH dehydrogenase subunit 5; Provisional


:

Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 353.68  E-value: 6.20e-119
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101043   1 LLLIGCMTMFMAGLGANFEFDLSSIIALSTLSQLGLMMSILSMGYSGLAFFHLLTHALFKALLFMCAGSMIHNLKDSQDI 80
Cdd:MTH00165 246 LLLISLLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSLGFPKLAFFHLLTHALFKALLFLCAGSIIHNMSNSQDI 325

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101043  81 RFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVCLSWINFLIFFLYFISTGLTASYSFRLFYYSMMGDNN 160
Cdd:MTH00165 326 RFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMVSMSNLNFFIFFLFFFSTGLTVSYSFRLIYYSMSGDFN 405

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101043 161 FYPSYFFDDKSYFISFGMICLLFVSVFGGGFLSWLIFPVPYVIILPWYLSFLTLFVVIVGSYLGYLISDFVYFYDLFSLN 240
Cdd:MTH00165 406 LKSLNNLSDESKFMLKSMILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLTLFVILLGGWLGYELSLMSLSYNLKSLK 485

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 674101043 241 FLSFVSFVGSMWFMPFLSTNYISYLPLKFGYNLSSSLDYGWGELLGGQGLYSFFLYVIDYVQSLCDSNFSVYLLTFIF 318
Cdd:MTH00165 486 NYKLSSFLGSMWFMPFLSTYGISYYPLNLGSLSLKSFDQGWSEYFGGQGLYNFLKKLSKLIQWLQNNNLKIYLLSFLL 563
 
Name Accession Description Interval E-value
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
 1-318 6.20e-119

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 353.68  E-value: 6.20e-119
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101043   1 LLLIGCMTMFMAGLGANFEFDLSSIIALSTLSQLGLMMSILSMGYSGLAFFHLLTHALFKALLFMCAGSMIHNLKDSQDI 80
Cdd:MTH00165 246 LLLISLLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSLGFPKLAFFHLLTHALFKALLFLCAGSIIHNMSNSQDI 325

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101043  81 RFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVCLSWINFLIFFLYFISTGLTASYSFRLFYYSMMGDNN 160
Cdd:MTH00165 326 RFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMVSMSNLNFFIFFLFFFSTGLTVSYSFRLIYYSMSGDFN 405

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101043 161 FYPSYFFDDKSYFISFGMICLLFVSVFGGGFLSWLIFPVPYVIILPWYLSFLTLFVVIVGSYLGYLISDFVYFYDLFSLN 240
Cdd:MTH00165 406 LKSLNNLSDESKFMLKSMILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLTLFVILLGGWLGYELSLMSLSYNLKSLK 485

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 674101043 241 FLSFVSFVGSMWFMPFLSTNYISYLPLKFGYNLSSSLDYGWGELLGGQGLYSFFLYVIDYVQSLCDSNFSVYLLTFIF 318
Cdd:MTH00165 486 NYKLSSFLGSMWFMPFLSTYGISYYPLNLGSLSLKSFDQGWSEYFGGQGLYNFLKKLSKLIQWLQNNNLKIYLLSFLL 563
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 1-227 1.13e-41

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 152.23  E-value: 1.13e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101043   1 LLLIGCMTMFMAGLGANFEFDLSSIIALSTLSQLGLMMSILSMGYSGLAFFHLLTHALFKALLFMCAGSMIHNLkDSQDI 80
Cdd:COG1009  278 VAIIGAITALFAALIALAQTDIKRVLAYSTVSQLGYMFLALGVGAYVAALFHLLTHAFFKALLFLGAGSVIHAT-GTRDI 356

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101043  81 RFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE-VVCLSWINFLIFFLYFISTGLTASYSFRLFYYSMMGDN 159
Cdd:COG1009  357 RKMGGLRKKMPITAITFLIGALSLAGIPPFAGFFSKEAILEaALEAGGLGPLLLAVALLGAFLTAFYSFRLFFLVFFGKP 436

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 674101043 160 NFYPSYFFDDKSYFISFGMICLLFVSVFGGGFLSWL---------IFPVPYVIILPWYLSFLTLFVVIVGSYLGYLI 227
Cdd:COG1009  437 RPKTPKHPHESPWLMTLPLVVLAVLSLVLGLLLPGLlegllapaaVLGGELHLAHGLLLNALPLLLSLLGIALGYLL 513
NDH_I_L TIGR01974
proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th ...
 3-227 7.91e-38

proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th (based on E. coli) structural gene, L, of bacterial NADH dehydrogenase I, as well as chain 5 of the corresponding mitochondrial complex I and subunit 5 (or F) of the chloroplast NAD(P)H-plastoquinone dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273905 [Multi-domain]  Cd Length: 609  Bit Score: 141.65  E-value: 7.91e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101043    3 LIGCMTMFMAGLGANFEFDLSSIIALSTLSQLGLMMSILSMGYSGLAFFHLLTHALFKALLFMCAGSMIHNLKDSQDIRF 82
Cdd:TIGR01974 282 IIGAITALFAATVALVQNDIKRILAYSTMSQLGYMFLALGVGAYAAAIFHLMTHAFFKALLFLGAGSVIHAMHHEQDIRK 361

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101043   83 MGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVCLSWINFLIFFLYFISTGLTASYSFRLFYYSMMGDNNFY 162
Cdd:TIGR01974 362 MGGLRKKMPVTYITFLIGSLALIGFPGFAGFFSKDLILEAAFASGTHSFLFVAGLIGAFLTAFYSFRLIFMVFHGKERHE 441

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 674101043  163 PSYFFDDKSYFISFGMICLLFVSVFGGGFLSWLIFPVPYVII-----------LPWYLSFLTLFVVIVGSYLGYLI 227
Cdd:TIGR01974 442 ADAHPHESPLVMLLPLIVLAVGSVFAGFFIVPLFEFLKGVLPtsaepalehhhVPALEIWSPTAVAILGILLAYLL 517
NADH5_C pfam06455
NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of ...
 146-318 1.23e-36

NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of several NADH dehydrogenase subunit 5 proteins and is found in conjunction with pfam00361 and pfam00662.


Pssm-ID: 368917 [Multi-domain]  Cd Length: 181  Bit Score: 129.59  E-value: 1.23e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101043  146 YSFRLFYYSMMGDNNFYPSYFFDDKSYFISFGMICLLFVSVFGGGFLSWLIFPVPYVIILPWYLSFLTLFVVIVGSYLGY 225
Cdd:pfam06455   1 YSFRLIYYVMTGSPRFSSLSPINENNPIMINPIKRLAIGSIIGGSLLSWLIFPKPPMMTMPLYLKLLALLVTILGLLLGL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101043  226 LISDFVYFYDLFSLNFlSFVSFVGSMWFMPFLSTNYISYLPLKFGYNLSSSLDYGWGELLGGQGLYSFFLYVIDYVQSLC 305
Cdd:pfam06455  81 ELSNLSNKQLKKSLNF-NLHSFSGSMWFFPNLSHRLIPKLSLKLGQKLAKQIDQGWSEKFGPQGIAKTLMTLSKIIQNSQ 159

                         170
                  ....*....|...
gi 674101043  306 DSNFSVYLLTFIF 318
Cdd:pfam06455 160 KGLIKIYLLSFLL 172
 
Name Accession Description Interval E-value
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
 1-318 6.20e-119

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 353.68  E-value: 6.20e-119
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101043   1 LLLIGCMTMFMAGLGANFEFDLSSIIALSTLSQLGLMMSILSMGYSGLAFFHLLTHALFKALLFMCAGSMIHNLKDSQDI 80
Cdd:MTH00165 246 LLLISLLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSLGFPKLAFFHLLTHALFKALLFLCAGSIIHNMSNSQDI 325

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101043  81 RFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVCLSWINFLIFFLYFISTGLTASYSFRLFYYSMMGDNN 160
Cdd:MTH00165 326 RFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMVSMSNLNFFIFFLFFFSTGLTVSYSFRLIYYSMSGDFN 405

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101043 161 FYPSYFFDDKSYFISFGMICLLFVSVFGGGFLSWLIFPVPYVIILPWYLSFLTLFVVIVGSYLGYLISDFVYFYDLFSLN 240
Cdd:MTH00165 406 LKSLNNLSDESKFMLKSMILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLTLFVILLGGWLGYELSLMSLSYNLKSLK 485

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 674101043 241 FLSFVSFVGSMWFMPFLSTNYISYLPLKFGYNLSSSLDYGWGELLGGQGLYSFFLYVIDYVQSLCDSNFSVYLLTFIF 318
Cdd:MTH00165 486 NYKLSSFLGSMWFMPFLSTYGISYYPLNLGSLSLKSFDQGWSEYFGGQGLYNFLKKLSKLIQWLQNNNLKIYLLSFLL 563
ND5 MTH00209
NADH dehydrogenase subunit 5; Provisional
 1-318 1.43e-77

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177252 [Multi-domain]  Cd Length: 564  Bit Score: 246.87  E-value: 1.43e-77
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101043   1 LLLIGCMTMFMAGLGANFEFDLSSIIALSTLSQLGLMMSILSMGYSGLAFFHLLTHALFKALLFMCAGSMIHNLKDSQDI 80
Cdd:MTH00209 242 LLLLGSLTTLMASMSANVESDLKKIIALSTLSQLGLMMCSLGLNQPELAFFHLITHALFKALLFICAGNIIHSHGHSQDI 321

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101043  81 RFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVCLSWINFLIFFLYFISTGLTASYSFRLFYYSMMGDNN 160
Cdd:MTH00209 322 RMVGNLWYQMPITSICLNIANLSLCGIPFLAGFYSKDLILESMLESNMPIMTLILMFLSTSLTAAYSMRLSYFSLWGPNS 401

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101043 161 FYPSYFFDDKSYFISFGMICLLFVSVFGGGFLSWLIFPVPYVIILPWYLSFLTLFVVIVGSYLGYlisdFVYFYDLFSLN 240
Cdd:MTH00209 402 SKSLNSSFDQNKLNLKPMLVLTLGSITGGSVMSWVMVPSVNSVVLPWFLKLLPIMLILFGVLLMY----MVLKKNFFLIK 477

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 674101043 241 FLSFVSFVGSMWFMPFLSTNYISYLPLKFGYNLSSSLDYGWGELLGGQGLYSFFLYVIDYVQSLCDSNFSVYLLTFIF 318
Cdd:MTH00209 478 GYKVNYFLSQMWFLPDLSSQPVNKFTMKLSKTMLKLLDQGWVEKMSGQGSFKVLKKSSKLSQIIQNNSLKLFVTFMML 555
ND5 MTH00151
NADH dehydrogenase subunit 5; Provisional
 1-318 5.94e-77

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214436 [Multi-domain]  Cd Length: 565  Bit Score: 245.52  E-value: 5.94e-77
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101043   1 LLLIGCMTMFMAGLGANFEFDLSSIIALSTLSQLGLMMSILSMGYSGLAFFHLLTHALFKALLFMCAGSMIHNLKDSQDI 80
Cdd:MTH00151 243 LLFISLLTLLMAGISACYENDLKKIIALSTLSQLGVMMFSLGLGMPSLALFHLYTHALFKALLFLCAGSIIHSSSGTQDI 322

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101043  81 RFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVCLSWINFLIFFLYFISTGLTASYSFRLFYYSMMGDNN 160
Cdd:MTH00151 323 RLLGSLFLSLPLTSGCLNISSLSLCGAPFLSGFYSKDLILESSLMSPTSLLMVLLMFVGVGLTALYSARLSFCLVWGSMK 402

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101043 161 FYPSYFFDDKSYFISFGMICLLFVSVFGGGFLSWLIFPVPYVIILPWYLSFLTLFVVIVGSYLGYLISDFVYfydlFSLN 240
Cdd:MTH00151 403 SSSLSSKSDEDFYVSLPMLLLSLGALIGGKLLQSLFEGFSEEFFLPSYLKLLIGFVILLGLFLSFGFWDSGF----SSSK 478

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 674101043 241 FLSFVSFVGSMWFMPFLSTNYISYLPLKFGYNLSSSLDYGWGELLGGQGLYSFFLYVIDYVQSLCDSNFSVYLLTFIF 318
Cdd:MTH00151 479 MVKLSFFFSSMWFLSPLSSQPLKSLSLKLSNSSMKSLDMGWLEILGGQGVFKANKSFSVLNESWPVKWFNFFIGLILL 556
ND5 MTH00207
NADH dehydrogenase subunit 5; Provisional
 1-314 6.02e-75

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 164753 [Multi-domain]  Cd Length: 572  Bit Score: 240.44  E-value: 6.02e-75
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101043   1 LLLIGCMTMFMAGLGANFEFDLSSIIALSTLSQLGLMMSILSMGYSGLAFFHLLTHALFKALLFMCAGSMIHNLKDSQDI 80
Cdd:MTH00207 246 LLLTASLTMLMAGLSAMTECDMKKIIALSTLSQLGVMMASLGLGMPKLALFHLITHALFKALLFVCAGSLIHSHHHSQDL 325

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101043  81 RFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVCLSWINFLIFFLYFISTGLTASYSFRLFYYSMMGDNN 160
Cdd:MTH00207 326 RTMGNLTNQMPLTTSCLLIANLALCGSPFLSGFYSKDLILESSLFYPHNSLMILMIFLATALTAAYSTRFTLAVLWSPNS 405

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101043 161 FYPSYFFDDKSYFISFGMICLLFVSVFGGGFLSWLIFPVPYVIILPWYLSFLTLFVVIVGSYLGYLISDFVYFYDLFSLN 240
Cdd:MTH00207 406 SSPYHHLEDEDKSLTTPMLLLTLGAITSGSALNWWLPTPQEEPILPLQYKLLPLLVVTLGALLAWLFTTPNITKTPLLIN 485

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 674101043 241 FLSFVSFVGSMWFMPFLSTNYISYLPLKFGYNLSSSLDYGWGELLGGQGLYSFFLYVIDYVQSLCDSNFSVYLL 314
Cdd:MTH00207 486 NPLSHFASCLMWFLVPLSSQFIMSTPMNLSHNYLKLLDQGWLEMLGAQGTFKMFSRSSNNVMKLQKNIPNNYLM 559
ND5 MTH00211
NADH dehydrogenase subunit 5; Provisional
 1-318 1.13e-57

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214459 [Multi-domain]  Cd Length: 597  Bit Score: 195.56  E-value: 1.13e-57
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101043   1 LLLIGCMTMFMAGLGANFEFDLSSIIALSTLSQLGLMMSILSMGYSGLAFFHLLTHALFKALLFMCAGSMIHNLKDSQDI 80
Cdd:MTH00211 271 VLLLGALTMLFGALCALTQNDIKKIVAFSTTSQLGLMMVTLGLNQPQLAFLHICTHAFFKAMLFMCSGSIIHGLNNEQDI 350

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101043  81 RFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVCLSWINFLIFFLYFISTGLTASYSFRLFYYSMMGDNN 160
Cdd:MTH00211 351 RKMGGLSKNLPFTSSCLFLGSLALMGFPFLSGFFSKDLILESMNGSYLNAWALLLTLLATSLTAAYSFRLIFLSLGGYPR 430

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101043 161 FYPSYFFDDKSYFISFGMICLLFVSVFGGGFLSWLIFPVPYVII-LPWYLSFLTLFVVIVGSYLGYLISDFvyfydLFSL 239
Cdd:MTH00211 431 FLSLSPINENYKLLKNPLKRLALGSILAGFIITSNLPPEKPEILsLPFLLKLMPLLVTIVGLLLGLELVNL-----THKQ 505

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101043 240 NFLSFVSFVGSMWFMPFLSTNYISYLPLKFGYNLSSSL-DYGWGELLGGQGLYSFFLYVIDYVQSLCDSNFSVYLLTFIF 318
Cdd:MTH00211 506 LKTSTLSFSNMLGYYPPIIHRLLPKLSLKWGQTLSTHLmDLGWYEKLGPKGLGVNQKKLIKLVTSPQQGLIKSYLALLLL 585
ND5 MTH00208
NADH dehydrogenase subunit 5; Provisional
 2-318 2.11e-52

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177251 [Multi-domain]  Cd Length: 628  Bit Score: 181.71  E-value: 2.11e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101043   2 LLIGCMTMFMAGLGANFEFDLSSIIALSTLSQLGLMMSILSMGYSGLAFFHLLTHALFKALLFMCAGSMIHNLKDSQDIR 81
Cdd:MTH00208 304 LILGSLTALFAASTAISQHDIKKIIAYSTTSQLGLMVVAIGLNQPNLALFHICTHAFFKAMLFLCSGSIIHSLNNEQDLR 383

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101043  82 FMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVCLSWINFLIFFLYFISTGLTASYSFRLFYYSMMGDNNF 161
Cdd:MTH00208 384 KMGGLSFLLPVTSSCIILGSLALMGTPFLAGFYSKDLILEAGLASISNLLSIILALIATLLTAVYSFRIIFFCFLNNPSF 463

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101043 162 YPSYFFDDKSYFISFGMICLLFVSVFGGGFLSWLIFPVPyVIILPWYLSFLTLFVVIVGSYLGYLisdFVYFYDLFSLNF 241
Cdd:MTH00208 464 SPLSPISEENPNLTNPLLRLAIGTIISGWFFSNFVFNLP-PLTLPLILKSLPLIVTIIGAAFSFS---FLLSLSSNPINS 539

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 674101043 242 LSFvSFVGSMWFMPFLSTNYISYLPLKFGYNLSS-SLDYGWGELLGGQGLYSFFLYVIDYVQSLCDSNFSVYLLTFIF 318
Cdd:MTH00208 540 NFF-SFLSNQWFFVNISHSIIISFSFFTSLFGSTrTLDRGWSENIGPQGIGNTSSTLSKSYQLTQTGYIKQYLLSSTL 616
ND5 MTH00004
NADH dehydrogenase subunit 5; Validated
 2-163 4.57e-51

NADH dehydrogenase subunit 5; Validated


Pssm-ID: 214398 [Multi-domain]  Cd Length: 602  Bit Score: 177.66  E-value: 4.57e-51
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101043   2 LLIGCMTMFMAGLGANFEFDLSSIIALSTLSQLGLMMSILSMGYSGLAFFHLLTHALFKALLFMCAGSMIHNLKDSQDIR 81
Cdd:MTH00004 277 LCLGALTTLFAATCALTQNDIKKIIAFSTSSQLGLMMVTIGLNQPQLAFLHISTHAFFKAMLFLCSGSIIHNLNNEQDIR 356

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101043  82 FMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVCLSWINFLIFFLYFISTGLTASYSFRLFYYSMMGDNNF 161
Cdd:MTH00004 357 KMGGLQKTLPITSSCLTIGNLALMGTPFLSGFYSKDTIIETLNTSYLNAWALLLTLLATSFTAAYSLRMILLVQTGFPRT 436


                 ..
gi 674101043 162 YP 163
Cdd:MTH00004 437 PP 438
ND5 MTH00066
NADH dehydrogenase subunit 5; Provisional
 2-318 2.00e-48

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214416 [Multi-domain]  Cd Length: 598  Bit Score: 170.47  E-value: 2.00e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101043   2 LLIGCMTMFMAGLGANFEFDLSSIIALSTLSQLGLMMSILSMGYSGLAFFHLLTHALFKALLFMCAGSMIHNLKDSQDIR 81
Cdd:MTH00066 275 LCLGALTTLFTAACALTQNDIKKIVAFSTSSQLGLMMVTIGLNQPQLAFFHICTHAFFKAMLFLCSGSIIHSLNDEQDIR 354

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101043  82 FMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVCLSWINFLIFFLYFISTGLTASYSFRLFYYSMMGDNNF 161
Cdd:MTH00066 355 KMGGLQKALPITTSCLTIGSLALTGTPFLAGFFSKDAIIEAMNTSNLNSWALILTLIATSFTAVYSFRIIYFSSMKFPRS 434

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101043 162 YPSYFFDDKSYFISFGMICLLFVSVFGGGFLSWLIFPV-PYVIILPWYLSFLTLFVVIVGSYLGYLISDFVYFYDLFSLN 240
Cdd:MTH00066 435 LPLSPINENNPLIINPIKRLAWGSIIAGLLIIFNILPMkPQILTMPTFMKLAALLVTLLGLLIALDLAKITSKTTPKTKM 514

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 674101043 241 FlsfvSFVGSMWFMPFLSTNYISYLPLKFGYNLSSSL-DYGWGELLGGQGLYSFFLYVIDYVQSLCDSNFSVYLLTFIF 318
Cdd:MTH00066 515 H----SFSNLLAFFPTIIHRLSPKTNLNSGQNIATHLtDMTWYEKSGPKGLTNQQLPPIKTITNIQTGLIKTYLTLFLI 589
ND5 MTH00108
NADH dehydrogenase subunit 5; Provisional
 8-220 4.80e-46

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177170 [Multi-domain]  Cd Length: 602  Bit Score: 164.26  E-value: 4.80e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101043   8 TMFMAgLGANFEFDLSSIIALSTLSQLGLMMSILSMGYSGLAFFHLLTHALFKALLFMCAGSMIHNLKDSQDIRFMGSIV 87
Cdd:MTH00108 285 TLFTA-ICALTQNDIKKIVAFSTSSQLGLMMVTIGINQPHLAFLHICTHAFFKAMLFMCSGSIIHNLNDEQDIRKMGGLF 363

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101043  88 NFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVCLSWINFLIFFLYFISTGLTASYSFRLFYYSMMGDNNFYPSYFF 167
Cdd:MTH00108 364 KTLPFTSTALIIGSLALTGMPFLTGFYSKDLIIEAANTSYTNAWALLITLIATSLTAAYSTRIIFFALLGQPRFPPLITI 443

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....
gi 674101043 168 DDKSYFISFGMICLLFVSVFGGGFLSWLIFPVPYVII-LPWYLSFLTLFVVIVG 220
Cdd:MTH00108 444 NENNPLLINPIKRLLLGSIFAGFLISNNIPPTTIPQMtMPLYLKLTALAVTILG 497
ND5 MTH00137
NADH dehydrogenase subunit 5; Provisional
 21-163 2.59e-43

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214428 [Multi-domain]  Cd Length: 611  Bit Score: 156.92  E-value: 2.59e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101043  21 DLSSIIALSTLSQLGLMMSILSMGYSGLAFFHLLTHALFKALLFMCAGSMIHNLKDSQDIRFMGSIVNFMPLTSVCFNVS 100
Cdd:MTH00137 302 DIKKIVAFSTSSQLGLMMVTIGLNQPQLAFLHICTHAFFKAMLFLCSGSIIHSLNDEQDIRKMGGLHHLTPFTSSCLTIG 381

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 674101043 101 SLSLCGMPFLAGFYSKDLILEVVCLSWINFLIFFLYFISTGLTASYSFRLFYYSMMGDNNFYP 163
Cdd:MTH00137 382 SLALTGTPFLAGFFSKDAIIEALNTSHLNAWALTLTLIATSFTAVYSLRVVFFVSMGHPRFNP 444
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 1-227 1.13e-41

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 152.23  E-value: 1.13e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101043   1 LLLIGCMTMFMAGLGANFEFDLSSIIALSTLSQLGLMMSILSMGYSGLAFFHLLTHALFKALLFMCAGSMIHNLkDSQDI 80
Cdd:COG1009  278 VAIIGAITALFAALIALAQTDIKRVLAYSTVSQLGYMFLALGVGAYVAALFHLLTHAFFKALLFLGAGSVIHAT-GTRDI 356

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101043  81 RFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE-VVCLSWINFLIFFLYFISTGLTASYSFRLFYYSMMGDN 159
Cdd:COG1009  357 RKMGGLRKKMPITAITFLIGALSLAGIPPFAGFFSKEAILEaALEAGGLGPLLLAVALLGAFLTAFYSFRLFFLVFFGKP 436

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 674101043 160 NFYPSYFFDDKSYFISFGMICLLFVSVFGGGFLSWL---------IFPVPYVIILPWYLSFLTLFVVIVGSYLGYLI 227
Cdd:COG1009  437 RPKTPKHPHESPWLMTLPLVVLAVLSLVLGLLLPGLlegllapaaVLGGELHLAHGLLLNALPLLLSLLGIALGYLL 513
ND5 MTH00210
NADH dehydrogenase subunit 5; Provisional
 3-318 6.81e-38

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177253 [Multi-domain]  Cd Length: 616  Bit Score: 142.07  E-value: 6.81e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101043   3 LIGCMTMFMAGLGANFEFDLSSIIALSTLSQLGLMMSILSMGYSGLAFFHLLTHALFKALLFMCAGSMIHNLKDSQDIRF 82
Cdd:MTH00210 280 ILGALTAFFAATVGVVQNDLKKVIAYSTCSQLGYMVMVCGISNYSTSLFHLMNHAFFKALLFLSAGSVIHAVSDEQDMRK 359

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101043  83 MGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVCLSWINFLIFFLYFISTGLTASYSFRLFYYSMMGDNNFY 162
Cdd:MTH00210 360 MGGLIKSIPFTYVMILIGSLSLMGFPYLTGFYSKDLILELTYDKYYIAFAYWLGSFSALLTAFYSIRLIYLTFITNTNSK 439

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101043 163 PSYFF--DDKSYFISFGMICLLFVSVFGGGFLSWLIFPVPYVIILPWYLSFLTLFVVIVGSYLGYLISDFVYFYD----- 235
Cdd:MTH00210 440 KEVFIgvHESSWNITFPLLLLAFGSIFVGYLGKEVVLSNVIPPIVPNSIKMIPLLFSLLGALLAFVIYNSMVFLIkisrr 519

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101043 236 -LFSLNFLSFVSFVGSMWFMPFLSTNYISYLPLKFGYNLSSS-LDYGWGELLGGQGLYSFFLYVIDYVQSLCDSNFSVYL 313
Cdd:MTH00210 520 gVSIRLYHVIYTFLNSAWQFNYVINHFIVKNIWKFGHLITYRiIDRGLLEIIGPRGISKVLIKLTQKISNLQSGMVFNYA 599


                 ....*
gi 674101043 314 LTFIF 318
Cdd:MTH00210 600 LIMII 604
NDH_I_L TIGR01974
proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th ...
 3-227 7.91e-38

proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th (based on E. coli) structural gene, L, of bacterial NADH dehydrogenase I, as well as chain 5 of the corresponding mitochondrial complex I and subunit 5 (or F) of the chloroplast NAD(P)H-plastoquinone dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273905 [Multi-domain]  Cd Length: 609  Bit Score: 141.65  E-value: 7.91e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101043    3 LIGCMTMFMAGLGANFEFDLSSIIALSTLSQLGLMMSILSMGYSGLAFFHLLTHALFKALLFMCAGSMIHNLKDSQDIRF 82
Cdd:TIGR01974 282 IIGAITALFAATVALVQNDIKRILAYSTMSQLGYMFLALGVGAYAAAIFHLMTHAFFKALLFLGAGSVIHAMHHEQDIRK 361

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101043   83 MGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVCLSWINFLIFFLYFISTGLTASYSFRLFYYSMMGDNNFY 162
Cdd:TIGR01974 362 MGGLRKKMPVTYITFLIGSLALIGFPGFAGFFSKDLILEAAFASGTHSFLFVAGLIGAFLTAFYSFRLIFMVFHGKERHE 441

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 674101043  163 PSYFFDDKSYFISFGMICLLFVSVFGGGFLSWLIFPVPYVII-----------LPWYLSFLTLFVVIVGSYLGYLI 227
Cdd:TIGR01974 442 ADAHPHESPLVMLLPLIVLAVGSVFAGFFIVPLFEFLKGVLPtsaepalehhhVPALEIWSPTAVAILGILLAYLL 517
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
 3-294 4.43e-37

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 139.83  E-value: 4.43e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101043   3 LIGCMTMFMAGLGANFEFDLSSIIALSTLSQLGLMMSILSMGYSGLAFFHLLTHALFKALLFMCAGSMIHNLKDSQDIRF 82
Cdd:MTH00020 279 IVGSLTVFFAATVGLVQNDLKKVIAYSTCSQLGYMVVACGLSHYSISLFHLMNHAFFKALLFLSAGSVIHALSDEQDMRK 358

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101043  83 MGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVCLSWINFLIFFLYFISTGLTASYSFRLFYYSMMGDNNFY 162
Cdd:MTH00020 359 MGGLISFLPLTYIFFLIGSLSLMGFPYLTGFYSKDLILELAFGQYYLIFAYWLGCFSALLTAFYSIRLIYLTFLSNTNLK 438

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101043 163 PSYFFD--DKSYFISFGMICLLFVSVFGGGFLSWLI-------FPVPYVII--LPWYLSFLTLFVVIV-GSYLGYLISDF 230
Cdd:MTH00020 439 KAVFFHlhEGDWNLLLPLGILALGSIFVGYLAKEMIwsfqitlPPIVPLSIklLPVFLSLGGIGLVIIlYFYSSKTFRVP 518

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 674101043 231 VYFYDLFSLNFLsfvsfvGSMWFMPFLSTNYISYLPLKFGYNLS-SSLDYGWGELLGGQGLYSFF 294
Cdd:MTH00020 519 FSFIGRNSYTFL------GSAWQFNYILNYFLIKKIWKGGHLISyRTIDKGVLELVGPKGISNFL 577
NADH5_C pfam06455
NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of ...
 146-318 1.23e-36

NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of several NADH dehydrogenase subunit 5 proteins and is found in conjunction with pfam00361 and pfam00662.


Pssm-ID: 368917 [Multi-domain]  Cd Length: 181  Bit Score: 129.59  E-value: 1.23e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101043  146 YSFRLFYYSMMGDNNFYPSYFFDDKSYFISFGMICLLFVSVFGGGFLSWLIFPVPYVIILPWYLSFLTLFVVIVGSYLGY 225
Cdd:pfam06455   1 YSFRLIYYVMTGSPRFSSLSPINENNPIMINPIKRLAIGSIIGGSLLSWLIFPKPPMMTMPLYLKLLALLVTILGLLLGL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101043  226 LISDFVYFYDLFSLNFlSFVSFVGSMWFMPFLSTNYISYLPLKFGYNLSSSLDYGWGELLGGQGLYSFFLYVIDYVQSLC 305
Cdd:pfam06455  81 ELSNLSNKQLKKSLNF-NLHSFSGSMWFFPNLSHRLIPKLSLKLGQKLAKQIDQGWSEKFGPQGIAKTLMTLSKIIQNSQ 159

                         170
                  ....*....|...
gi 674101043  306 DSNFSVYLLTFIF 318
Cdd:pfam06455 160 KGLIKIYLLSFLL 172
PRK06590 PRK06590
NADH:ubiquinone oxidoreductase subunit L; Reviewed
 4-227 3.19e-36

NADH:ubiquinone oxidoreductase subunit L; Reviewed


Pssm-ID: 235836 [Multi-domain]  Cd Length: 624  Bit Score: 137.21  E-value: 3.19e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101043   4 IGCMTMFMAGLGANFEFDLSSIIALSTLSQLGLMMSILSMGYSGLAFFHLLTHALFKALLFMCAGSMIHNLKDSQDIRFM 83
Cdd:PRK06590 287 VGAVTALFAAFIGLVQTDIKRVLAYSTMSQLGYMFLALGVGAYAAAIFHLMTHAFFKALLFLGAGSVIHAMHHEQDIRKM 366

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101043  84 GSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVcLSWINFLIFFLYFISTGLTASYSFRLFYYSMMG---DNN 160
Cdd:PRK06590 367 GGLRKKMPVTYATFLIGTLALIGIPPFAGFFSKDEILEAA-FANGHINLFVAGLVGAFLTAFYSFRLIFLVFHGkekEKI 445

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 674101043 161 FYPSyffdDKSYFISFGMICLLFVSVFGG-----GFLSWLIFPVPYVII-----LPWYLSFLTLFVVIVGSYLGYLI 227
Cdd:PRK06590 446 HHPH----ESPAVMTLPLIVLAVLSVFAGalivpPFLGVLPLTTELAHGeaehhLPVWVALLPLVVALAGIALAWLL 518
PRK07376 PRK07376
NADH-quinone oxidoreductase subunit L;
3-158 6.97e-30

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236005 [Multi-domain]  Cd Length: 673  Bit Score: 119.36  E-value: 6.97e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101043   3 LIGCMTMFMAGLGANFEFDLSSIIALSTLSQLGLMMSILSMGYSGLAFFHLLTHALFKALLFMCAGSMIHNLKD------ 76
Cdd:PRK07376 296 WTGAITAFLGASIALTQNDIKKGLAYSTISQLGYMVMAMGCGAYSAGLFHLMTHAYFKAMLFLGSGSVIHGMEEvvghdp 375

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101043  77 --SQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVCLSwiNFLIFFLYFISTGLTASYSFRLFYYS 154
Cdd:PRK07376 376 vlAQDMRLMGGLRKYMPITAITFLIGCLAISGIPPFAGFWSKDEILGAAFEA--NPALWFVGFLTAGMTAFYMFRMYFLT 453


                 ....
gi 674101043 155 MMGD 158
Cdd:PRK07376 454 FEGE 457
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 1-139 1.83e-25

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 103.16  E-value: 1.83e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101043    1 LLLIGCMTMFMAGLGANFEFDLSSIIALSTLSQLGLMMSILSMGYSG---LAFFHLLTHALFKALLFMCAGSMIHNLKDS 77
Cdd:pfam00361 150 LLILAIISMLLGSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYgiqAAIFHLLTHGLFSAGLFLCAGSVIYRRVHT 229

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 674101043   78 QDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVCLSWINFLIFFLYFIS 139
Cdd:pfam00361 230 RNIRDYGGLAKTMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 3-317 2.02e-25

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 106.58  E-value: 2.02e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101043   3 LIGCMTMFMAGLGANFEFDLSSIIALSTLSQLGLMMSILSM-GYSGLAFFHLLTHALFKALLFMCAGSMIHNLK-DSQDI 80
Cdd:MTH00032 294 IFGALTAFFAATVGLVQNDLKKVIAYSTCSQLGYMVLIIGIeGSHNVGLFHLVNHAFFKALLFLSAGSVIHSTTvDEQDM 373

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101043  81 RFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVV------------CLSWINFLI---------------- 132
Cdd:MTH00032 374 RKMGGLIHSIPFTYTMMLIGSFSIMGLPYLTGFYSKDLILELTysgrnmgipfgsSLLKIQGDIgikkddrgsiggpegy 453

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101043 133 --------FFLYFISTGLTASYSFRLFYYSMMGDNNFYPSYFFDDKSYFISFGMICLLFVSVFGGGFLSWLIFPV----- 199
Cdd:MTH00032 454 psrgsafaFWLGTVAALLTAFYSIRLVYITFIISPNSPKESLISSHINIVDKRVLTVLSLLCFGAIFVGYLIQDIligdi 533

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101043 200 ------PYVIILPWYLSFLTLFVVIVGSYLGYLISDFVYFYDLFSLNFLSFVSFVGSMWFMPFLSTNYISYLPLKFG-YN 272
Cdd:MTH00032 534 ehpivpPLIKVMPTLMGLFGMGLCLWAQKGTREGELYWGFDPIGPSFLLSIYSFLGGAWQGDHLINKLVAIPLFSFGhWG 613

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*
gi 674101043 273 LSSSLDYGWGELLGGQGLYSFFLYVIDYVQSLCDSNFSVYLLTFI 317
Cdd:MTH00032 614 IYKTLDRGWLELFGPQGISTIALRVSQFISNLQSGVISRYALVLL 658
ndhF CHL00025
NADH dehydrogenase subunit 5
 3-176 8.54e-24

NADH dehydrogenase subunit 5


Pssm-ID: 214338 [Multi-domain]  Cd Length: 741  Bit Score: 101.89  E-value: 8.54e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101043   3 LIGCMTMFMAGLGANFEFDLSSIIALSTLSQLGLMMSILSMGYSGLAFFHLLTHALFKALLFMCAGSMIHNL-------- 74
Cdd:CHL00025 296 LIGIITALLGATLALAQKDIKRGLAYSTMSQLGYMMLALGIGSYRAALFHLITHAYSKALLFLGSGSVIHSMepivgysp 375

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101043  75 KDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVvclSWINFLIF-FLYFISTGLTASYSFRLFYY 153
Cdd:CHL00025 376 DKSQNMVLMGGLRKYMPITKTTFLLGTLSLCGIPPLACFWSKDEILND---SWLYSPIFaIIAWSTAGLTAFYMFRIYLL 452

                        170       180
                 ....*....|....*....|....*.
gi 674101043 154 SMMGD---NNFYPSYFFDDKSYFISF 176
Cdd:CHL00025 453 TFEGHlrvHFQNYSGKKNSSFYSISL 478
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 1-153 4.62e-21

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 92.90  E-value: 4.62e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101043   1 LLLIGCMTMFMAGLGANFEFDLSSIIALSTLSQLGLMMSILSMG-YSGL--AFFHLLTHALFKALLFMCAGSMIHNLKdS 77
Cdd:COG0651  275 LLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGtPLGLagALFHLLNHALAKALLFLAAGAIERATG-T 353

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 674101043  78 QDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVcLSWINFLIFFLYFISTGLTASYSFRLFYY 153
Cdd:COG0651  354 RDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAA-LEAGAWLLAAVLLLSSLLTLAYFVRIFGR 428
ND5 MTH00095
NADH dehydrogenase subunit 5; Provisional
 1-272 5.16e-19

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177158 [Multi-domain]  Cd Length: 527  Bit Score: 87.28  E-value: 5.16e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101043   1 LLLIGCMTMFMAGLGANFEFDLSSIIALSTLSQLGLMMSILSMGYSGLAFFHLLTHALFKALLFMCAGSMIHNLKDSQDI 80
Cdd:MTH00095 230 MLLIGLFTMFFSSLSALVEEDMKKVVALSTLSQMGFSMLTFGSGLSFVSFIHLLSHALFKSCLFMQVGYLIHSNFGQQDG 309

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101043  81 RFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVCLSWINFLIFFLYFISTGLTASYSFRLFYYSMMgdnN 160
Cdd:MTH00095 310 RNYSNNGNLPMFIQLQLLVTLFCLCGLMFTSGMVSKELILELFFFNNYMIFFSLMFFFSVFLTFGYSYRLWKSFFL---S 386

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101043 161 FYPSYFFDDKSYFISFGMICLLFVSVFgggFLSWLIFpvpYVIILPWYLSFLTLFVVIVGSYLGYLISDFVYFYDLFSLN 240
Cdd:MTH00095 387 FSKVVNVYSSSVLMNFLSLMLVFFSVF---FLWWLNF---NLLNLPSLFLYLDFYVPLFYLFMIMLFSFFFFKLLFKELK 460

                        250       260       270
                 ....*....|....*....|....*....|..
gi 674101043 241 FLSFVSFVGSMWFMPFLSTNYISYLPLKFGYN 272
Cdd:MTH00095 461 YKFFVDYFAKNVIYKLKNLKFFDLFLNKFGYK 492
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 1-157 6.18e-17

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 81.08  E-value: 6.18e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101043   1 LLLIGCMTMFMAGLGANFEFDLSSIIALSTLSQLGLMMSILSMG-YSGL--AFFHLLTHALFKALLFMCAGSMIHNLKdS 77
Cdd:PRK08375 274 LAVLALLSMLVGSLAALGQDDVKRVLAYSTVSQMGYILLGLALLtPLALaaGLLHLLHHALMKGALFLAAGAIEVTYG-T 352

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101043  78 QDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSK-DLILEVVCLSWINFLIFFLyfISTGLTASYSFRLFYYSMM 156
Cdd:PRK08375 353 RRLSELSGLGRRMPLTAAAFAVASLSLIGVPPTSGFVSKwYLVVGAVEAGQWLVLAVLL--ASSLLALLYFLRIWYRAFF 430


                 .
gi 674101043 157 G 157
Cdd:PRK08375 431 G 431
PRK12650 PRK12650
DUF4040 family protein;
1-150 1.59e-15

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 77.39  E-value: 1.59e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101043   1 LLLIGC--MTMFMAGLGANFEFDLSSIIALSTLSQLGLMMSILSMGYS---GLAFFHLLTHALFKALLFMCAGSMIHNlK 75
Cdd:PRK12650 273 WLLIIVgmITALMGAVFAVQKTDLKKLTAYSTVSQLGWIVATIGVGTPfalTAAVVHTLAHALFKSSLFMLIGVVDHQ-A 351

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 674101043  76 DSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVCLSWINFLIFFLYFISTGLTA----SYSFRL 150
Cdd:PRK12650 352 GTRDIRRLGSLWRRMPFTFVSVTIAALSMAAVPPLFGFVSKEGMLTAFLEAPGGNAGVVLLLVGAALGAvftfAYSARL 430
PRK12645 PRK12645
monovalent cation/H+ antiporter subunit A; Reviewed
 3-157 2.06e-15

monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237155 [Multi-domain]  Cd Length: 800  Bit Score: 76.89  E-value: 2.06e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101043   3 LIGCMTMFMAGLGANFEFDLSSIIALSTLSQLGLMMSILSMGYSGL----------------AFFHLLTHALFKALLFMC 66
Cdd:PRK12645 279 LVGLITLFWGSLNAVKQTDLKGILAFSTVSQLGLIMSLLGIGAASLhyqgddskiyaaaitaAIFHLINHATFKGSLFMI 358

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101043  67 AGSMIHNlKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVC---------LSWINFLIFFLYF 137
Cdd:PRK12645 359 VGIVDHE-TGTRDIRKLGGLMTIMPITFTIALIGALSMAGLPPFNGFLSKEMFFESMLnateanlfsLDTWGVLFPVIAW 437

                        170       180
                 ....*....|....*....|
gi 674101043 138 ISTGLTASYSFRLFYYSMMG 157
Cdd:PRK12645 438 VASVFTFVYSIIFIFKTFFG 457
PRK12648 PRK12648
putative monovalent cation/H+ antiporter subunit A; Reviewed
 3-149 3.43e-15

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237157 [Multi-domain]  Cd Length: 948  Bit Score: 76.38  E-value: 3.43e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101043   3 LIGCMTMFMAGLGANFEFDLSSIIALSTLSQLGLMMSILSMGySGLA----FFHLLTHALFKALLFMCAGSMIHNlKDSQ 78
Cdd:PRK12648 276 GAGLITLLLGAYFALFQHDLKGLLAYSTISHLGLITLLLGLG-SPLAavaaIFHIINHATFKASLFMAAGIIDHE-TGTR 353

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 674101043  79 DIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDL----ILEVVCLSWINFLIFFLYFISTGLTASYSFR 149
Cdd:PRK12648 354 DMRRLSGLRRLMPITATLAMVAAAAMAGVPLLNGFLSKEMffaeTLDTHLLGSLDWLLPVAATLAGAFSVAYSLR 428
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 1-152 1.32e-14

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 74.58  E-value: 1.32e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101043   1 LLLIGCMTMFMAGLGANFEFDLSSIIALSTLSQLGLMMSILSMGYS-----GLAFfhLLTHALFKALLFMCAGSMIHNlK 75
Cdd:PRK12644 270 VLVLGLATMLLGGWRALRQHDLKLILAYGTVSQLGFLTVLVGIGTRdaalaGLAM--LLAHALFKAALFLVVGIIDHS-T 346

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101043  76 DSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVV----CLSWINFLIFFLYFISTGLTASYSFRLF 151
Cdd:PRK12644 347 GTRDIRKLSGLGRRQPVLAVVAALAAASMAGLPPLLGFVAKEAALEAVlhdgALGPAGPVVLAGIVLGSILTVAYSLRFL 426


                 .
gi 674101043 152 Y 152
Cdd:PRK12644 427 W 427
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 1-152 1.77e-14

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 73.85  E-value: 1.77e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101043   1 LLLIGCMTMFMAGLGANFEFDLSSIIALSTLSQLGLMMSILSMGYS---GLAFFHLLTHALFKALLFMCAGSMIHNLKdS 77
Cdd:PRK12667 298 LIILGAVSAIIGALMMVVQKDVKRLLAYSTISHMGYIFMGIGIGTQlglAAALFHIINHAIAKSLLFLASGVFIHAAG-T 376

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 674101043  78 QDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVCLSWINFLIFFLyFISTGLTASYSFRLFY 152
Cdd:PRK12667 377 RDIDELAGLGRKMPIASFAFLIGALSLVGIPPLNGFFSKLLLFNALLESGFYLPALVL-LIASAISLVGYFRAWY 450
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 1-123 1.13e-13

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 71.49  E-value: 1.13e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101043   1 LLLIGCMTMFMAGLGANFEFDLSSIIALSTLSQLGLMMSILSMGYSGL---AFFHLLTHALFKALLFMCAGSMIHNlKDS 77
Cdd:PRK12647 262 LPLFGGLTMLTGALLAVRQTDLKLILAYSTVSALGTLVMLLGLGSELAikaAVLFLVAHSLYKGALFMVAGIIDHE-TGT 340

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 674101043  78 QDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVV 123
Cdd:PRK12647 341 RDITKLGGLRRAMPITAAAALLAALSMAGLPPLFGFLAKELIYEAL 386
PRK12646 PRK12646
DUF4040 family protein;
4-121 1.59e-13

DUF4040 family protein;


Pssm-ID: 183646 [Multi-domain]  Cd Length: 800  Bit Score: 70.94  E-value: 1.59e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101043   4 IGCMTMFMAGLGANFEFDLSSIIALSTLSQLGLMMSILSMGySGLA------------------FFHLLTHALFKALLFM 65
Cdd:PRK12646 280 VGLITMLFGSITALKQWDLKGILAYSTISQLGMIMAMVGIG-GGYAqhqqdaiasiyvfvlfaaLFHLMNHAIFKCALFM 358

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 674101043  66 CAGSMIHNlKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE 121
Cdd:PRK12646 359 GVGIIDHE-AGTRDIRILSGMRQLFPKMNLVMTIAALSMAGVPFLNGFLSKEMFLD 413
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 4-121 3.19e-13

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 70.24  E-value: 3.19e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101043   4 IGCMTMFMAGLGANFEFDLSSIIALSTLSQLGLMMSIlsMGYS---------GLAFFHLLTHALFKALLFMCAGSMIHNL 74
Cdd:PRK12649 284 TGMITMVLAGFLAFRQTDIKAILAYSTISQLAYLMTM--YGYTtyhepglgvAAATFHLLNHATFKACLFLVAGIVAHEA 361

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 674101043  75 KdSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE 121
Cdd:PRK12649 362 A-TRDIRKLGGLRKEMPITFIVASIAALAMAGIPPLNGFLSKEMFYE 407
PRK07390 PRK07390
NAD(P)H-quinone oxidoreductase subunit F; Validated
 1-115 1.28e-12

NAD(P)H-quinone oxidoreductase subunit F; Validated


Pssm-ID: 236008 [Multi-domain]  Cd Length: 613  Bit Score: 68.40  E-value: 1.28e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101043   1 LLLIGCMTMFMAGLGANFEFDLSSIIALSTLSQLGLMMSILSMGYSGLAFFHLLTHALFKALLFMCAGSMIHNlKDSQDI 80
Cdd:PRK07390 287 LIVIGTVTAIGASLVAIAQIDIKRALSYSTSAYLGLVFIAVGLQQPDIALLLLLTHAIAKALLFMSVGSIILT-TITQDL 365

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 674101043  81 RFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYS 115
Cdd:PRK07390 366 TELGGLWSRMPATTLAFLVGSAGLVALLPLGGFWA 400
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 1-157 9.49e-12

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 65.50  E-value: 9.49e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101043   1 LLLIGCMTMFMAGLGANFEFDLSSIIALSTLSQLGLMMSILSMGYSGL---------------AFFHLLTHALFKALLFM 65
Cdd:PRK08376 290 IIILGCLTMFVGVAMAVVQKDVKRLLAYHSVSQIGYMLLGLGVGLAALgdpamasygeialagGIYHIVNHALYKALLFL 369

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101043  66 CAGSMIHNLkDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVCLswINFLIFFLYFISTGLTAS 145
Cdd:PRK08376 370 TAGAVIYET-GTRNLNELGGLARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLIYESSAL--FNPILGVIAMIGSVLTLA 446

                        170
                 ....*....|..
gi 674101043 146 YSFRLFYYSMMG 157
Cdd:PRK08376 447 SFVKVFHTAFFG 458
PRK08377 PRK08377
NADH dehydrogenase subunit N; Validated
 1-150 1.57e-11

NADH dehydrogenase subunit N; Validated


Pssm-ID: 181406 [Multi-domain]  Cd Length: 494  Bit Score: 64.79  E-value: 1.57e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101043   1 LLLIGCMTMFMAGLGANFEFDLSSIIALSTLSQLGLMMSILSMGYSG---LAFFHLLTHALFKALLFMCAGSMIHNLKDS 77
Cdd:PRK08377 276 VIIMATLTVFFAELSALRQKNVKRMIAYSSIGQVGMIALALALGTQAgvdAGVFHMINHAIVKALLFLAVGYVGITLGGT 355

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 674101043  78 QDIRFMGSIVNfMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILeVVCLSWINFLIFFLYFISTGLTASYSFRL 150
Cdd:PRK08377 356 EIEKFEGLGKR-MPLTALALTIGALSTVGIPLFNVFWSKFRII-LAGLSAGYTWPVALVLGASVVEAVYYFRL 426
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
 1-186 3.05e-11

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 63.68  E-value: 3.05e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101043   1 LLLIGCMTMFMAGLGANFEFDLSSIIALSTLSQLGLMM---SILSMGYSGLAFFHLLTHALFKALLFMCAGSmIHNLKDS 77
Cdd:PRK06589 283 LIFIPIVSIFYSSLKALKTDNIKKILAYSTISQLSLALlsaFILTPKALGAAILHLVSHSFAKICLFYSMGS-IYSLKKE 361

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101043  78 QDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVCLS---WINFLIFFLYFISTGLTASYSFRLFYys 154
Cdd:PRK06589 362 DQVDKLHGTSKSFPLISFIISISSLSLIGIPIFSGFISKFLILLAASEQnqpWLSIIVMLVVIASSILSALYLLKILS-- 439

                        170       180       190
                 ....*....|....*....|....*....|..
gi 674101043 155 mmgdNNFYPSYffdDKSYFISFGMICLLFVSV 186
Cdd:PRK06589 440 ----SIYKPSL---SENSFITKSLPYLMQISV 464
PRK08042 PRK08042
formate hydrogenlyase subunit 3; Reviewed
 1-113 4.07e-11

formate hydrogenlyase subunit 3; Reviewed


Pssm-ID: 181206 [Multi-domain]  Cd Length: 593  Bit Score: 63.69  E-value: 4.07e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101043   1 LLLIGCMTMFMAGLGANFEFDLSSIIALSTLSQLGLMMSILSMGYSGLA--------------FFHLLTHALFKALLFMC 66
Cdd:PRK08042 248 LLVLGMITAFVGGLYALMEHNIQRLLAYHTLENIGIILLGLGAGVTGIAleqpalialglvggLYHLLNHSLFKSVLFLG 327

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 674101043  67 AGSMIHNlKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGF 113
Cdd:PRK08042 328 AGSVWFR-TGHRDIEKLGGIGKKMPVISIAMLVGLMAMAALPPLNGF 373
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 1-121 8.29e-11

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 62.83  E-value: 8.29e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101043   1 LLLIGCMTMFMAGLGANFEFDLSSIIALSTLSQLGLMM--------------SILSMGYSGLAFFHLLTHALFKALLFMC 66
Cdd:PRK08667 273 ILLAGSISALLGVIYALKEHDLKGLLAYSSIENIGIILmgiglyvifgvyglDTLALLALGGALFHSLNHALFKSLLFLT 352

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 674101043  67 AGSMIHNLKDsQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE 121
Cdd:PRK08667 353 AGSVVHATGT-RNIEKMGGLVKLMPYTSALFLVGAVSIAALPPFNGFASELLLYE 406
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 1-152 1.35e-10

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 61.94  E-value: 1.35e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101043   1 LLLIGCMTMFMAGLGANFEFDLSSIIALSTLSQLGLMMSILSMGYS---GLAFFHLLTHALFKALLFMCAGSMIHNLKDS 77
Cdd:PRK08668 275 LAWLGNISIIVGTLMAILQEDIKKLIAYSSVANGGYILVGLGLGTSlgfAGGLFHVFNHALFKGLFFLIFAAVIYRTGTT 354

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 674101043  78 QdIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVcLSWINFLIFFLYFISTGLTASYSFRLFY 152
Cdd:PRK08668 355 K-ISEMGGLIEKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEAL-ISKGMPITAFMAFFGSIGSFLYVFRPLA 427
PRK06521 PRK06521
hydrogenase 4 subunit B; Validated
 1-126 3.25e-10

hydrogenase 4 subunit B; Validated


Pssm-ID: 235820 [Multi-domain]  Cd Length: 667  Bit Score: 61.06  E-value: 3.25e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101043   1 LLLIGCMTMFMAGLGANFEFDLSSIIALSTLSQLGLMMSILSMGYSGLA--------------FFHLLTHALFKALLFMC 66
Cdd:PRK06521 279 VLALGAISAVLGVLYALAEHDLKRLLAYSTIENIGIIFVGLGLAMVFIAygmpllaalaltaaLYHLLNHALFKSLLFLG 358

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101043  67 AGSMIHNLKdSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVCLS 126
Cdd:PRK06521 359 AGAVLHATG-TRDMEKLGGLIRRMPWTAWAFLIGCLAISALPPLNGFVSEWLLLQSLLSS 417
PRK12668 PRK12668
Na(+)/H(+) antiporter subunit D;
10-120 6.16e-10

Na(+)/H(+) antiporter subunit D;


Pssm-ID: 237168 [Multi-domain]  Cd Length: 581  Bit Score: 59.91  E-value: 6.16e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101043  10 FMAGLGANF---EFDLSSIIALSTLSQLGLMMSILSMGySGL----AFFHLLTHALFKALLFMCAGSMIHNLKDSqDIRF 82
Cdd:PRK12668 249 AMAVYGVFFallENDLRRLLSYHIVSQVGYMVAGIGIG-TALaingAVAHAFNHILYKGLLFMSAGAVLYRTGTE-KLTE 326

                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 674101043  83 MGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLIL 120
Cdd:PRK12668 327 LGGLYRSMPLTALFCLVGALSISAFPLFSGFVSKSMII 364
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 3-121 2.29e-09

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 58.04  E-value: 2.29e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101043   3 LIGCMTMFMAGLGANFEFDLSSIIALSTLSQLGLMMSILSMGysglAFFHLlTHALFKALLFMCAGSmIHNLKDSQDIRF 82
Cdd:PRK07234 250 IFGVGTALLGVLFALLEKDLKRMLAFSTISQLGFILAAPLVG----GLYAL-AHGLVKSTLFLCAGA-LPSRNFTELISQ 323

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 674101043  83 MGSIVNFMPLTsvcfnVSSLSLCGMPFLAGFYSKDLILE 121
Cdd:PRK07234 324 MLGIGKWIPLT-----MASFSIAGFPLLAGFVSKVLTLK 357
PRK07691 PRK07691
putative monovalent cation/H+ antiporter subunit D; Reviewed
 1-163 4.38e-09

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 181085 [Multi-domain]  Cd Length: 496  Bit Score: 57.27  E-value: 4.38e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101043   1 LLLIGCMTMFMAGLGANFEFDLSSIIALSTLSQLGLM-MSILSMGYSGL--AFFHLLTHALFKALLFMCAGSMIHnLKDS 77
Cdd:PRK07691 278 ILILALLTIIFGVIGAVAYFDIKKIIIYNIMIAVGVIlVGVAMMTESGMigAIYYLIHDMIVKAALFLLIGIMIK-ITGT 356

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101043  78 QDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVcLSWINFLIFFLYFISTGLTASYSFRLFYYSMMG 157
Cdd:PRK07691 357 TDLKKMGGLIKRYPVLGWMFFIAALSLAGIPPLSGFYGKFFIVEGT-FEAGFYVSGIIVLLSSLLVLYSVIKIFLKGFWG 435


                 ....*.
gi 674101043 158 DNNFYP 163
Cdd:PRK07691 436 EPKGYD 441
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 1-157 1.98e-08

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 55.09  E-value: 1.98e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101043   1 LLLIGCMTMFMAGLGANFEFDLSSIIALSTLSQLGLM-MSILSMGYSGL--AFFHLLTHALFKALLFMCAGSMIHNLKdS 77
Cdd:COG1008  278 LAALGVIGIIYGALVALAQTDLKRLIAYSSVSHMGFVlLGIFALNPLGLqgAVLQMVSHGLITAALFLLVGVLYDRTH-T 356

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101043  78 QDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVCLSwiNFLIFFLYFISTGLTASYSFRLFYYSMMG 157
Cdd:COG1008  357 RDIADLGGLAKRMPVLAALFLLAALASLGLPGTSGFVGEFLVLLGAFQV--NPWLAILAALGLILTAAYLLWMYQRVFFG 434
PRK06525 PRK06525
hydrogenase 4 subunit D; Validated
 1-120 4.07e-08

hydrogenase 4 subunit D; Validated


Pssm-ID: 180606 [Multi-domain]  Cd Length: 479  Bit Score: 54.21  E-value: 4.07e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101043   1 LLLIGCMTMFMAGLGANFEFDLSSIIALSTLSQLGLMMSILSMGYSGL------AFFHLLTHALFKALLFMCAGSMIHNL 74
Cdd:PRK06525 275 GAVMAIVTLLYGFLMYLPQQDMKRLLAYSTITQLGYMFFGLSLAILGSrlalegSIAYIFNHAFAKSLFFLVAGALSYSC 354

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 674101043  75 kDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLIL 120
Cdd:PRK06525 355 -GTRLLPRLRGVLKKLPLVGVGFCVAALAITGVPPFNGFFSKFPIF 399
ND5 MTH00063
NADH dehydrogenase subunit 5; Provisional
 8-229 4.69e-08

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214414 [Multi-domain]  Cd Length: 522  Bit Score: 54.11  E-value: 4.69e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101043   8 TMFMAGLGANFEFDLSSIIALSTLSQLGLMMSILSMGYSGLAFFHLLTHALFKALLFMCAGSMIHNLKDSQDIRFMGSIV 87
Cdd:MTH00063 230 TIFITGVSSLFFSDLKKIVALSTCNNISWCVLYLIYGDVILSLFQLVSHGVSKCLLFMLVGDVMSGSGGSQSSNCVYSSI 309

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101043  88 NFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVCLSWINFLIFFLYFISTGLTASYSFRLFYYSMMGDNNFYPSYFF 167
Cdd:MTH00063 310 LYGSWNLFYLFLLVLGLSGVPFIGVFFSKHFLLSSFSSVVFNVSLLLVVILCVFLSYLYSFRLCLILFGVKSSLSSGVRF 389

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 674101043 168 DdksYFISFGMI-CLLFVSVFGGGFLSwlifpvpYVIILPWYLSFLTLFVVIVGSYLGYLISD 229
Cdd:MTH00063 390 L---FFNSGLMVfLWLFINYYVFLLLD-------EVVYLGVFISLVLLLVQLLGLLVGVLFYD 442
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 21-158 1.13e-06

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 49.82  E-value: 1.13e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101043  21 DLSSIIALSTLSQLG-LMMSILSM---GYSGlAFFHLLTHALFKALLFMCAGSMIHNLKdSQDIRFMGSIVNFMPLTSVC 96
Cdd:PRK05846 300 DIKKLIAYSSISHMGfVTLGIFAGnqlGIQG-AIFQMISHGLSSAALFLLVGVLYDRLH-TRDIADYGGLAKVMPVLAAF 377

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 674101043  97 FNVSSLSLCGMPFLAGFYSKDLILevVCLSWINFLIFFLYFISTGLTASYSFRLFYYSMMGD 158
Cdd:PRK05846 378 FLFFAMASLGLPGTSGFVGEFLIL--LGSFQVNPVIAFIATTGLILAAVYSLWLYQRVMFGP 437
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
 1-121 3.57e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 45.34  E-value: 3.57e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101043   1 LLLIGCMTMFMAGLGANFEFDLSSIIALSTLSQLGLMMSILSM----GYSGlAFFHLLTHALFKALLFMCAGsMIHNLKD 76
Cdd:PRK12665 276 LMVVALLTMVVGILGAIAQSDIKRLLSFTLVSHIGYMVFGIALstvaGLSG-AIYYVAHHITVQTTLFLVVG-LIERQAG 353

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*
gi 674101043  77 SQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE 121
Cdd:PRK12665 354 SSSLRRLGGLAKASPLLAVLFFVPALNLGGIPPFSGFIGKVALLE 398
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 1-133 4.06e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 45.11  E-value: 4.06e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101043   1 LLLIGCMTMFMAGLGANFEFDLSSIIALSTLSQLGLMMSILSMG-YSGL--AFFHLLTHALFKALLFMCAGSMIHNLkDS 77
Cdd:PRK12662 282 FMILAALAIVFGSVLAILSKDIKRIFAYSSISHIGYIILAVSLNtYYGLaaAVAYIVNHSIVKSALFMVSGSISYHF-GT 360

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 674101043  78 QDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVCLS--WINFLIF 133
Cdd:PRK12662 361 TKLEDCLNLWKSMPKITLAFVLLSLSLIGMPPTSGFVAKWYILDAFIKSnaWIGLVVL 418
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
1-160 6.31e-05

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 44.56  E-value: 6.31e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101043   1 LLLIGCMTMFMAGLGANFEFDLSSIIALSTLSQLGLMMS-ILSMGYSGL--AFFHLLTHALFKALLFMCAGSMIHnLKDS 77
Cdd:PRK12663 275 LATMAAITMVIGALGALAYKDIRRIAGYQVISSIGFILLgLALGTPAGIngAIFYLVHDMVVKTALFLIAGSLVR-LTGY 353

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101043  78 QDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVcLSWINFLIFFLYFIsTGLTASYS-FRLFYYSMM 156
Cdd:PRK12663 354 RSLQYLGGLYRKEPLFGALFLILIFAIGGLPPFSGFWGKVLLVQGA-LDNGAYILLALMLI-TSLITMYSlFRIFFLAYW 431


                 ....
gi 674101043 157 GDNN 160
Cdd:PRK12663 432 GDKD 435
PRK08168 PRK08168
NADH-quinone oxidoreductase subunit L;
1-69 1.53e-04

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236171 [Multi-domain]  Cd Length: 516  Bit Score: 43.15  E-value: 1.53e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 674101043   1 LLLIGCMTMFMAGLGANFEFDLSSIIALSTLSQLGLMMSILSMGYSGLAFFHLLTHALFKALLFMCAGS 69
Cdd:PRK08168 266 LVLVGLATAVLAGLVMLTRISIKVRLAWSTVAQMGFMLLECGLGLYELALLHLVAHSLYKAHAFLSASE 334
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 27-120 3.24e-04

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 42.22  E-value: 3.24e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101043  27 ALSTLSQLGLMMSILSMGySGLAFF----HLLTHALFKALLFMCAGSMIHNlKDSQDIRFMGSIVNFMPLTSVCFNVSSL 102
Cdd:PRK06458 310 AYSSIEHMGLIAFALGIG-GPLGIFaallHMLNHSLTKSAIFFASGNVLQK-YGTRDINVIRGLLKVSPLTGWGLMLGAL 387

                         90
                 ....*....|....*...
gi 674101043 103 SLCGMPFLAGFYSKDLIL 120
Cdd:PRK06458 388 AIAGMPPFGVFISEFLIL 405
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 1-151 1.24e-03

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 40.12  E-value: 1.24e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101043   1 LLLIGCMTMFMAGLGANFEFDLSSIIALSTLSQLGLMMSILSMGYSGLAF---FHLLTHALFKALLFMCAGsMIHNLKDS 77
Cdd:PRK08676 276 LIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPLALFwmlFHMLAHSLVKSGLFFSAG-ILHRQYRS 354

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 674101043  78 QDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLIL-EVVCLS-WINFLIFFLYFISTGLTASYSFRLF 151
Cdd:PRK08676 355 DRFDRIFDVFRLQPVAAWGVILGSAAIIGMPPFPLFLSKFFILlQLGGISvWLVLAVLLLLLLAASSFAIFLLKAF 430
PRK08601 PRK08601
NADH dehydrogenase subunit 5; Validated
 29-69 1.36e-03

NADH dehydrogenase subunit 5; Validated


Pssm-ID: 236310 [Multi-domain]  Cd Length: 509  Bit Score: 40.02  E-value: 1.36e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|.
gi 674101043  29 STLSQLGLMMSILSMGYSGLAFFHLLTHALFKALLFMCAGS 69
Cdd:PRK08601 297 STMAQMGFMLVQCALGAYSAAIIHLILHGLFKATLFLQSGS 337
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 1-116 2.75e-03

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 39.33  E-value: 2.75e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101043   1 LLLIGCMTMFMAGLGANFEFDLSSIIALSTLSQLG-LMMSILSMGYSGL--AFFHLLTHALFKALLFMCAGSMIHNLKDS 77
Cdd:COG1007  272 LAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGyLLLGLAAGTPLGVsaALFYLLAYLFMNLGAFAVILLLSRKGGEA 351

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 674101043  78 QDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSK 116
Cdd:COG1007  352 EEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGK 390
PRK12664 PRK12664
putative monovalent cation/H+ antiporter subunit D; Reviewed
 1-197 3.95e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237164 [Multi-domain]  Cd Length: 527  Bit Score: 38.94  E-value: 3.95e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101043   1 LLLIGCMTMFMAGLGANFEFDLSSIIALSTLSQLGLMMSILSMGYS-----GLAFFHLLTHALFKALLFMCAGSMIHNLK 75
Cdd:PRK12664 204 LLFLGIITAIYGIIFASLEQNIRRLLCYNVVGQMGLLIIAIGFSGSsgvaiGILILQIVLSVVYQTLLFMVADSVINRTR 283

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101043  76 dSQDIRFMGSIVNfMPLTSVCFNVSSLSLCGMPFLAGFYSKDLIL-EVVCLSWINFLIFFLYFI-STGLTASYSFRLFYY 153
Cdd:PRK12664 284 -KFNLNRVGGLFK-MSLEAMCCIIAILNMGAFPGTAGFVSKSLIThSIDTAGLTLVLYKKLFLIcSLLLFASVGLKFFWY 361

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*
gi 674101043 154 SMMGDNNFYPSYffdDKSYFIS-FGMICLLFVSVFGGGFLSWLIF 197
Cdd:PRK12664 362 AFISKSKSKPEA---EKVYIGSkLSMIILVLICVVLGMFNSYLLF 403
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH