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Conserved domains on  [gi|673056923|gb|AIK24075|]
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ribosomal protein L2, partial (chloroplast) [Colocasia menglaensis]

Protein Classification

50S ribosomal protein L2( domain architecture ID 1903562)

50S ribosomal protein L2 is required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Ribosomal_L2_C super family cl42133
Ribosomal Proteins L2, C-terminal domain;
1-65 1.09e-43

Ribosomal Proteins L2, C-terminal domain;


The actual alignment was detected with superfamily member CHL00052:

Pssm-ID: 455478  Cd Length: 273  Bit Score: 141.16  E-value: 1.09e-43
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 673056923   1 KCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKRPMTPWGYPALGRRSRKKKRYSDSFILRRRK 65
Cdd:CHL00052 209 KRWLGKRPKVRGVVMNPVDHPHGGGEGRAPIGRKKPVTPWGKPALGRKTRKRKKYSDNLILRRRK 273
 
Name Accession Description Interval E-value
rpl2 CHL00052
ribosomal protein L2
 1-65 1.09e-43

ribosomal protein L2


Pssm-ID: 176993  Cd Length: 273  Bit Score: 141.16  E-value: 1.09e-43
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 673056923   1 KCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKRPMTPWGYPALGRRSRKKKRYSDSFILRRRK 65
Cdd:CHL00052 209 KRWLGKRPKVRGVVMNPVDHPHGGGEGRAPIGRKKPVTPWGKPALGRKTRKRKKYSDNLILRRRK 273
RplB COG0090
Ribosomal protein L2 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L2 ...
 3-65 1.73e-34

Ribosomal protein L2 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L2 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 439860 [Multi-domain]  Cd Length: 276  Bit Score: 117.44  E-value: 1.73e-34
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 673056923   3 WLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRkRPMTPWGYPALGRRSRKKKRYSDSFILRRRK 65
Cdd:COG0090  213 WLGIRPTVRGVAMNPVDHPHGGGEGRTSGGR-HPVSPWGKPTKGYKTRKKNKRSDKFIVRRRK 274
rplB_bact TIGR01171
ribosomal protein L2, bacterial/organellar; This model distinguishes bacterial and organellar ...
 3-65 1.75e-32

ribosomal protein L2, bacterial/organellar; This model distinguishes bacterial and organellar ribosomal protein L2 from its counterparts in the archaea nad in the eukaryotic cytosol. Plant mitochondrial examples tend to have long, variable inserts. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 273481 [Multi-domain]  Cd Length: 273  Bit Score: 112.02  E-value: 1.75e-32
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 673056923    3 WLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKrPMTPWGYPALGRRSRKKKRYSDSFILRRRK 65
Cdd:TIGR01171 211 WLGIRPTVRGVAMNPVDHPHGGGEGRTPIGRH-PVTPWGKPTKGYKTRKKKKYSDKFIVRRRK 272
Ribosomal_L2_C pfam03947
Ribosomal Proteins L2, C-terminal domain;
3-38 2.14e-18

Ribosomal Proteins L2, C-terminal domain;


Pssm-ID: 427606  Cd Length: 123  Bit Score: 72.03  E-value: 2.14e-18
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 673056923    3 WLGKRPVVRGVVMNPVDHPHGGGEGRAPiGRKRPMT 38
Cdd:pfam03947  89 WLGRRPTVRGVAMNPVDHPHGGGEGRTV-GRKHPVS 123
 
Name Accession Description Interval E-value
rpl2 CHL00052
ribosomal protein L2
 1-65 1.09e-43

ribosomal protein L2


Pssm-ID: 176993  Cd Length: 273  Bit Score: 141.16  E-value: 1.09e-43
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 673056923   1 KCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKRPMTPWGYPALGRRSRKKKRYSDSFILRRRK 65
Cdd:CHL00052 209 KRWLGKRPKVRGVVMNPVDHPHGGGEGRAPIGRKKPVTPWGKPALGRKTRKRKKYSDNLILRRRK 273
RplB COG0090
Ribosomal protein L2 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L2 ...
 3-65 1.73e-34

Ribosomal protein L2 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L2 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 439860 [Multi-domain]  Cd Length: 276  Bit Score: 117.44  E-value: 1.73e-34
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 673056923   3 WLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRkRPMTPWGYPALGRRSRKKKRYSDSFILRRRK 65
Cdd:COG0090  213 WLGIRPTVRGVAMNPVDHPHGGGEGRTSGGR-HPVSPWGKPTKGYKTRKKNKRSDKFIVRRRK 274
rplB_bact TIGR01171
ribosomal protein L2, bacterial/organellar; This model distinguishes bacterial and organellar ...
 3-65 1.75e-32

ribosomal protein L2, bacterial/organellar; This model distinguishes bacterial and organellar ribosomal protein L2 from its counterparts in the archaea nad in the eukaryotic cytosol. Plant mitochondrial examples tend to have long, variable inserts. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 273481 [Multi-domain]  Cd Length: 273  Bit Score: 112.02  E-value: 1.75e-32
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 673056923    3 WLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKrPMTPWGYPALGRRSRKKKRYSDSFILRRRK 65
Cdd:TIGR01171 211 WLGIRPTVRGVAMNPVDHPHGGGEGRTPIGRH-PVTPWGKPTKGYKTRKKKKYSDKFIVRRRK 272
Ribosomal_L2_C pfam03947
Ribosomal Proteins L2, C-terminal domain;
3-38 2.14e-18

Ribosomal Proteins L2, C-terminal domain;


Pssm-ID: 427606  Cd Length: 123  Bit Score: 72.03  E-value: 2.14e-18
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 673056923    3 WLGKRPVVRGVVMNPVDHPHGGGEGRAPiGRKRPMT 38
Cdd:pfam03947  89 WLGRRPTVRGVAMNPVDHPHGGGEGRTV-GRKHPVS 123
PTZ00031 PTZ00031
ribosomal protein L2; Provisional
 3-65 9.02e-14

ribosomal protein L2; Provisional


Pssm-ID: 173329 [Multi-domain]  Cd Length: 317  Bit Score: 63.32  E-value: 9.02e-14
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 673056923   3 WLGKRPVVRGVVMNPVDHPHGGGEGRApiGRKRP-MTPWGYPALGRRSRKKKRYSdSFILRRRK 65
Cdd:PTZ00031 244 WLGKRPVVRGVAMNPSKHPHGGGTSKK--GTKRPkCSLWGICRDGYKTRSKKKPL-GLIIRRKI 304
rpl2p PRK09612
50S ribosomal protein L2P; Validated
 6-34 1.13e-06

50S ribosomal protein L2P; Validated


Pssm-ID: 236589 [Multi-domain]  Cd Length: 238  Bit Score: 43.30  E-value: 1.13e-06
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|
gi 673056923   6 KRPVVRGVVMNPVDHPHGGGE----GR-------APIGRK 34
Cdd:PRK09612 186 KWPRVRGVAMNAVDHPHGGGNhqhpGRpstvsrnAPPGRK 225
PTZ00180 PTZ00180
60S ribosomal protein L8; Provisional
 1-25 1.35e-06

60S ribosomal protein L8; Provisional


Pssm-ID: 173464 [Multi-domain]  Cd Length: 260  Bit Score: 43.18  E-value: 1.35e-06
                         10        20
                 ....*....|....*....|....*
gi 673056923   1 KCWlgkrPVVRGVVMNPVDHPHGGG 25
Cdd:PTZ00180 194 NCW----PKVRGVAMNPVEHPHGGG 214
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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