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Conserved domains on  [gi|672252931|gb|KFG29242|]
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ribosomal protein RPS28 [Toxoplasma gondii p89]

Protein Classification

eS28 family ribosomal protein( domain architecture ID 10015195)

eS28 family ribosomal protein similar to Dictyostelium discoideum 40S ribosomal protein S28

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PTZ00085 PTZ00085
40S ribosomal protein S28; Provisional
 51-118 2.08e-40

40S ribosomal protein S28; Provisional


:

Pssm-ID: 240261  Cd Length: 73  Bit Score: 128.72  E-value: 2.08e-40
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 672252931  51 MEQPKLAKVEKVLGRTGSRGGVLQVRVTFMADETdLAGRSLIRNVKGPVREGDILALLETEREARRLR 118
Cdd:PTZ00085   7 TEQPKLAKVIKVLGRTGSRGGVTQVRVQLMGEEG-DAGRTLIRNVKGPVREGDILSLMETEREARRLR 73
 
Name Accession Description Interval E-value
PTZ00085 PTZ00085
40S ribosomal protein S28; Provisional
 51-118 2.08e-40

40S ribosomal protein S28; Provisional


Pssm-ID: 240261  Cd Length: 73  Bit Score: 128.72  E-value: 2.08e-40
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 672252931  51 MEQPKLAKVEKVLGRTGSRGGVLQVRVTFMADETdLAGRSLIRNVKGPVREGDILALLETEREARRLR 118
Cdd:PTZ00085   7 TEQPKLAKVIKVLGRTGSRGGVTQVRVQLMGEEG-DAGRTLIRNVKGPVREGDILSLMETEREARRLR 73
Ribosomal_S28e pfam01200
Ribosomal protein S28e;
52-117 1.79e-33

Ribosomal protein S28e;


Pssm-ID: 460109  Cd Length: 64  Bit Score: 110.80  E-value: 1.79e-33
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 672252931   52 EQPKLAKVEKVLGRTGSRGGVLQVRVTFMADETdlAGRSLIRNVKGPVREGDILALLETEREARRL 117
Cdd:pfam01200   1 EKAQPAEVIKVLGRTGSRGEVTQVRVEILEGRD--KGRIITRNVKGPVRVGDILMLLETEREARRL 64
S1_S28E cd04457
S1_S28E: S28E, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide ...
 55-118 6.53e-33

S1_S28E: S28E, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. S28E protein is a component of the 30S ribosomal subunit. S28E is highly conserved among archaea and eukaryotes. S28E may control precursor RNA splicing and turnover in mRNA maturation process but its function in the ribosome is largely unknown. The structure contains an OB-fold found in many oligosaccharide and nucleic acid binding proteins. This implies that S28E might be involved in protein synthesis.


Pssm-ID: 239904  Cd Length: 60  Bit Score: 109.26  E-value: 6.53e-33
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 672252931  55 KLAKVEKVLGRTGSRGGVLQVRVTFMADetdlAGRSLIRNVKGPVREGDILALLETEREARRLR 118
Cdd:cd04457    1 KLAEVIKVLGRTGSRGEVTQVRVEFMDD----KGRSIIRNVKGPVREGDILMLLETEREARRLR 60
RPS28A COG2053
Ribosomal protein S28E/S33 [Translation, ribosomal structure and biogenesis]; Ribosomal ...
 57-118 1.26e-21

Ribosomal protein S28E/S33 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S28E/S33 is part of the Pathway/BioSystem: Archaeal ribosomal proteins


Pssm-ID: 441656  Cd Length: 73  Bit Score: 81.17  E-value: 1.26e-21
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 672252931  57 AKVEKVLGRTGSRGGVLQVRVTFMADETdlAGRSLIRNVKGPVREGDILALLETEREARRLR 118
Cdd:COG2053   12 AEVIEIIGRTGMTGEVTQVRVRILEGRD--KGRIITRNVKGPVRVGDILMLRETEREARKLK 71
 
Name Accession Description Interval E-value
PTZ00085 PTZ00085
40S ribosomal protein S28; Provisional
 51-118 2.08e-40

40S ribosomal protein S28; Provisional


Pssm-ID: 240261  Cd Length: 73  Bit Score: 128.72  E-value: 2.08e-40
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 672252931  51 MEQPKLAKVEKVLGRTGSRGGVLQVRVTFMADETdLAGRSLIRNVKGPVREGDILALLETEREARRLR 118
Cdd:PTZ00085   7 TEQPKLAKVIKVLGRTGSRGGVTQVRVQLMGEEG-DAGRTLIRNVKGPVREGDILSLMETEREARRLR 73
Ribosomal_S28e pfam01200
Ribosomal protein S28e;
52-117 1.79e-33

Ribosomal protein S28e;


Pssm-ID: 460109  Cd Length: 64  Bit Score: 110.80  E-value: 1.79e-33
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 672252931   52 EQPKLAKVEKVLGRTGSRGGVLQVRVTFMADETdlAGRSLIRNVKGPVREGDILALLETEREARRL 117
Cdd:pfam01200   1 EKAQPAEVIKVLGRTGSRGEVTQVRVEILEGRD--KGRIITRNVKGPVRVGDILMLLETEREARRL 64
S1_S28E cd04457
S1_S28E: S28E, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide ...
 55-118 6.53e-33

S1_S28E: S28E, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. S28E protein is a component of the 30S ribosomal subunit. S28E is highly conserved among archaea and eukaryotes. S28E may control precursor RNA splicing and turnover in mRNA maturation process but its function in the ribosome is largely unknown. The structure contains an OB-fold found in many oligosaccharide and nucleic acid binding proteins. This implies that S28E might be involved in protein synthesis.


Pssm-ID: 239904  Cd Length: 60  Bit Score: 109.26  E-value: 6.53e-33
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 672252931  55 KLAKVEKVLGRTGSRGGVLQVRVTFMADetdlAGRSLIRNVKGPVREGDILALLETEREARRLR 118
Cdd:cd04457    1 KLAEVIKVLGRTGSRGEVTQVRVEFMDD----KGRSIIRNVKGPVREGDILMLLETEREARRLR 60
RPS28A COG2053
Ribosomal protein S28E/S33 [Translation, ribosomal structure and biogenesis]; Ribosomal ...
 57-118 1.26e-21

Ribosomal protein S28E/S33 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S28E/S33 is part of the Pathway/BioSystem: Archaeal ribosomal proteins


Pssm-ID: 441656  Cd Length: 73  Bit Score: 81.17  E-value: 1.26e-21
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 672252931  57 AKVEKVLGRTGSRGGVLQVRVTFMADETdlAGRSLIRNVKGPVREGDILALLETEREARRLR 118
Cdd:COG2053   12 AEVIEIIGRTGMTGEVTQVRVRILEGRD--KGRIITRNVKGPVRVGDILMLRETEREARKLK 71
rps28e PRK04007
30S ribosomal protein S28e; Validated
 57-118 4.56e-20

30S ribosomal protein S28e; Validated


Pssm-ID: 235197  Cd Length: 70  Bit Score: 77.32  E-value: 4.56e-20
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 672252931  57 AKVEKVLGRTGSRGGVLQVRVTFMADETdlAGRSLIRNVKGPVREGDILALLETEREARRLR 118
Cdd:PRK04007   9 AEVIEIIGRTGMTGEVTQVKCRILEGRD--KGRIITRNVKGPVRVGDILMLRETEREARKLG 68
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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