|
Name |
Accession |
Description |
Interval |
E-value |
| COX3 |
MTH00099 |
cytochrome c oxidase subunit III; Validated |
1-262 |
4.87e-176 |
|
cytochrome c oxidase subunit III; Validated
Pssm-ID: 177161 Cd Length: 261 Bit Score: 485.00 E-value: 4.87e-176
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 671759930 1 MTHQTHAYHMVNPSPWPLTGALSALLMTSGLAMWFHFNNTTLLSMGMLTNLLTMYQWWRDIVREGTFQGHHTSIVQKGLR 80
Cdd:MTH00099 1 MTHQTHAYHMVNPSPWPLTGALSALLMTSGLIMWFHFNSTTLLTLGLLTNMLTMYQWWRDIIRESTFQGHHTPIVQKGLR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 671759930 81 YGMVLFIISEIFFFAGFFWAFYHSSLAPTPELGGCWPPTGIHPLNPLEVPLLNTAVLLASGVSITWAHHSLMEGDRTHML 160
Cdd:MTH00099 81 YGMILFIISEVFFFAGFFWAFYHSSLAPTPELGGCWPPTGITPLNPLEVPLLNTSVLLASGVSITWAHHSLMEGNRKHML 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 671759930 161 QALLITITLGIYFTLLQASEYFETSFTISDGVYGSTFFMATGFHGLHVIIGSTFLTVCFFRQLKFHFTSNHHFGF*KAAA 240
Cdd:MTH00099 161 QALFITILLGLYFTLLQASEYYEAPFTISDGIYGSTFFMATGFHGLHVIIGSTFLIVCFLRQLKFHFTSNHHFGF-EAAA 239
|
250 260
....*....|....*....|..
gi 671759930 241 WYWHFVDVVWLFLYVSIYWWGS 262
Cdd:MTH00099 240 WYWHFVDVVWLFLYVSIYWWGS 261
|
|
| COX3 |
pfam00510 |
Cytochrome c oxidase subunit III; |
6-262 |
3.10e-134 |
|
Cytochrome c oxidase subunit III;
Pssm-ID: 395410 Cd Length: 258 Bit Score: 379.06 E-value: 3.10e-134
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 671759930 6 HAYHMVNPSPWPLTGALSALLMTSGLAMWFHF--NNTTLLSMGMLTNLLTMYQWWRDIVREGTFQGHHTSIVQKGLRYGM 83
Cdd:pfam00510 1 HPFHMVSPSPWPLFGSFALLLLTSGLVLWFHGysGNMTLFIIALFSLLLTMYLWFRDIIREGTFLGDHTFAVQKGLNLGM 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 671759930 84 VLFIISEIFFFAGFFWAFYHSSLAPTPELGGCWPPTGIHPLNPLEVPLLNTAVLLASGVSITWAHHSLMEGDRTHMLQAL 163
Cdd:pfam00510 81 ILFIISEVFFFLGIFWAFFHSALSPTVELGAQWPPVGIHPVNPFEVPLLNTIILLSSGVTVTYAHHSLIEGNRKQALQGL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 671759930 164 LITITLGIYFTLLQASEYFETSFTISDGVYGSTFFMATGFHGLHVIIGSTFLTVCFFRQLKFHFTSNHHFGF*KAAAWYW 243
Cdd:pfam00510 161 ILTILLAVYFTGLQAMEYTEASFTISDGVYGSTFYFATGFHGLHVIIGTAFLAVCFLRLLKYHLTDNHHFGF-EAAILYW 239
|
250
....*....|....*....
gi 671759930 244 HFVDVVWLFLYVSIYWWGS 262
Cdd:pfam00510 240 HFVDVVWLFLYVSVYWWGS 258
|
|
| Cyt_c_Oxidase_III |
cd01665 |
Cytochrome c oxidase subunit III. Cytochrome c oxidase (CcO), the terminal oxidase in the ... |
18-260 |
1.30e-123 |
|
Cytochrome c oxidase subunit III. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. CcO catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Only subunits I and II are essential for function, but subunit III, which is also conserved, is believed to play a role in assembly of the multimer complex. Rhodobacter CcO subunit III stabilizes the integrity of the binuclear center in subunit I. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Subunit III contains bound phospholipids in several crystal structures and is proposed to contain a "lipid pool." These phospholipids are believed to intrinsic constituents similar to cofactors of the enzyme.
Pssm-ID: 238834 Cd Length: 243 Bit Score: 351.43 E-value: 1.30e-123
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 671759930 18 LTGALSALLMTSGLAMWFH-FNNTTLLSMGMLTNLLTMYQWWRDIVREGTFQGHHTSIVQKGLRYGMVLFIISEIFFFAG 96
Cdd:cd01665 1 ILGSFGLLLLALGLVLWMHgYGGPLLLFLGLILLILTMFLWWRDVIRESTFGGHHTKKVQKGLRLGMILFILSEVMFFFS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 671759930 97 FFWAFYHSSLAPTPELGGCWPPTGIHPLNPLEVPLLNTAVLLASGVSITWAHHSLMEGDRTHMLQALLITITLGIYFTLL 176
Cdd:cd01665 81 FFWAFFHSSLSPSVELGGTWPPVGIEPLNPFGIPLLNTIILLSSGATVTWAHHALLLGNRKKAILGLILTILLGVYFTGL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 671759930 177 QASEYFETSFTISDGVYGSTFFMATGFHGLHVIIGSTFLTVCFFRQLKFHFTSNHHFGF*KAAAWYWHFVDVVWLFLYVS 256
Cdd:cd01665 161 QAYEYYEASFTISDSVYGSTFFMLTGFHGLHVIIGTIFLTVCLIRLLKGHFSSNHHLGF-EAAIWYWHFVDVVWLFLFVF 239
|
....
gi 671759930 257 IYWW 260
Cdd:cd01665 240 VYWW 243
|
|
| CyoC |
COG1845 |
Heme/copper-type cytochrome/quinol oxidase, subunit 3 [Energy production and conversion]; |
70-260 |
1.84e-44 |
|
Heme/copper-type cytochrome/quinol oxidase, subunit 3 [Energy production and conversion];
Pssm-ID: 441450 Cd Length: 192 Bit Score: 148.46 E-value: 1.84e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 671759930 70 HHTSIVQKGLRYGMVLFIISEIFF-FAGFFWAFYHSSLAPtpelggcWPPTGIHPLNPLeVPLLNTAVLLASGVSITWAH 148
Cdd:COG1845 7 PHAPERRSPGKLGMWLFLASEVMLfAALFAAYFVLRASAP-------DWPAGAELLDLP-LPLINTLLLLLSSFTVALAV 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 671759930 149 HSLMEGDRTHMLQALLITITLGIYFTLLQASEY---FETSFTISDGVYGSTFFMATGFHGLHVIIGSTFLTVCFFRQLKF 225
Cdd:COG1845 79 RAARRGDRKGLRLWLLLTLLLGLAFLGLQAYEYshlIAEGLTPTSNAFGSFFFLLTGFHGLHVIIGLIWLLVVLVRALRG 158
|
170 180 190
....*....|....*....|....*....|....*
gi 671759930 226 HFTSNHHFGF*KAAAWYWHFVDVVWLFLYVSIYWW 260
Cdd:COG1845 159 GFTPENHTGV-EAAALYWHFVDVVWIFLFALVYLL 192
|
|
| QoxC |
TIGR02897 |
cytochrome aa3 quinol oxidase, subunit III; This family (QoxC) encodes subunit III of the ... |
127-261 |
4.23e-10 |
|
cytochrome aa3 quinol oxidase, subunit III; This family (QoxC) encodes subunit III of the aa3-type quinone oxidase, one of several bacterial terminal oxidases. This complex couples oxidation of reduced quinones with the reduction of molecular oxygen to water and the pumping of protons to form a proton gradient utilized for ATP production. aa3-type oxidases contain two heme a cofactors as well as copper atoms in the active site. [Energy metabolism, Electron transport]
Pssm-ID: 131943 Cd Length: 190 Bit Score: 57.56 E-value: 4.23e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 671759930 127 LEVPLLNTAVLLASGVSITWAHHSLMEGDRTHMLQALLITITLG---IYFTLLQASEYFETSFTISDGVYGSTFFMATGF 203
Cdd:TIGR02897 52 LPLVLIMTFLLLFSSFTCGIAIYEMRKENQKLMMFWMIITLLLGagfVGFEIYEFAHYASEGVTPQIGSYWSSFFVLLGT 131
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 671759930 204 HGLHVIIGsTFLTVCFFRQLKFHFTSNHHFGF*KAAAWYWHFVDVVWLFLYVSIYWWG 261
Cdd:TIGR02897 132 HGCHVTLG-IVWAICLLIQIQRRGLTPYTAPKVFIVSLYWHFLDVVWVFIFTAVYLIG 188
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| COX3 |
MTH00099 |
cytochrome c oxidase subunit III; Validated |
1-262 |
4.87e-176 |
|
cytochrome c oxidase subunit III; Validated
Pssm-ID: 177161 Cd Length: 261 Bit Score: 485.00 E-value: 4.87e-176
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 671759930 1 MTHQTHAYHMVNPSPWPLTGALSALLMTSGLAMWFHFNNTTLLSMGMLTNLLTMYQWWRDIVREGTFQGHHTSIVQKGLR 80
Cdd:MTH00099 1 MTHQTHAYHMVNPSPWPLTGALSALLMTSGLIMWFHFNSTTLLTLGLLTNMLTMYQWWRDIIRESTFQGHHTPIVQKGLR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 671759930 81 YGMVLFIISEIFFFAGFFWAFYHSSLAPTPELGGCWPPTGIHPLNPLEVPLLNTAVLLASGVSITWAHHSLMEGDRTHML 160
Cdd:MTH00099 81 YGMILFIISEVFFFAGFFWAFYHSSLAPTPELGGCWPPTGITPLNPLEVPLLNTSVLLASGVSITWAHHSLMEGNRKHML 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 671759930 161 QALLITITLGIYFTLLQASEYFETSFTISDGVYGSTFFMATGFHGLHVIIGSTFLTVCFFRQLKFHFTSNHHFGF*KAAA 240
Cdd:MTH00099 161 QALFITILLGLYFTLLQASEYYEAPFTISDGIYGSTFFMATGFHGLHVIIGSTFLIVCFLRQLKFHFTSNHHFGF-EAAA 239
|
250 260
....*....|....*....|..
gi 671759930 241 WYWHFVDVVWLFLYVSIYWWGS 262
Cdd:MTH00099 240 WYWHFVDVVWLFLYVSIYWWGS 261
|
|
| COX3 |
MTH00118 |
cytochrome c oxidase subunit III; Provisional |
1-262 |
3.09e-169 |
|
cytochrome c oxidase subunit III; Provisional
Pssm-ID: 177179 Cd Length: 261 Bit Score: 467.51 E-value: 3.09e-169
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 671759930 1 MTHQTHAYHMVNPSPWPLTGALSALLMTSGLAMWFHFNNTTLLSMGMLTNLLTMYQWWRDIVREGTFQGHHTSIVQKGLR 80
Cdd:MTH00118 1 MTHQAHPYHMVDPSPWPLTGAMAALLLTSGLAMWFHYNSTTLLKLGLLSMLLTMLQWWRDIVRESTFQGHHTPTVQKGLR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 671759930 81 YGMVLFIISEIFFFAGFFWAFYHSSLAPTPELGGCWPPTGIHPLNPLEVPLLNTAVLLASGVSITWAHHSLMEGDRTHML 160
Cdd:MTH00118 81 YGMILFITSEVFFFLGFFWAFYHSSLAPTPELGGQWPPTGIKPLNPFEVPLLNTAVLLASGVTVTWAHHSIMEGNRKQAI 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 671759930 161 QALLITITLGIYFTLLQASEYFETSFTISDGVYGSTFFMATGFHGLHVIIGSTFLTVCFFRQLKFHFTSNHHFGF*KAAA 240
Cdd:MTH00118 161 QALTLTILLGLYFTALQAMEYYEAPFTISDSVYGSTFFVATGFHGLHVIIGSTFLIVCLLRLIKFHFTTNHHFGF-EAAA 239
|
250 260
....*....|....*....|..
gi 671759930 241 WYWHFVDVVWLFLYVSIYWWGS 262
Cdd:MTH00118 240 WYWHFVDVVWLFLYISIYWWGS 261
|
|
| COX3 |
MTH00130 |
cytochrome c oxidase subunit III; Provisional |
1-262 |
4.75e-155 |
|
cytochrome c oxidase subunit III; Provisional
Pssm-ID: 177188 Cd Length: 261 Bit Score: 431.88 E-value: 4.75e-155
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 671759930 1 MTHQTHAYHMVNPSPWPLTGALSALLMTSGLAMWFHFNNTTLLSMGMLTNLLTMYQWWRDIVREGTFQGHHTSIVQKGLR 80
Cdd:MTH00130 1 MAHQAHAYHMVDPSPWPLTGAVAALLMTSGLAIWFHFHSTTLMTLGLILLLLTMYQWWRDIVREGTFQGHHTPPVQKGLR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 671759930 81 YGMVLFIISEIFFFAGFFWAFYHSSLAPTPELGGCWPPTGIHPLNPLEVPLLNTAVLLASGVSITWAHHSLMEGDRTHML 160
Cdd:MTH00130 81 YGMILFITSEVFFFLGFFWAFYHSSLAPTPELGGCWPPTGITTLDPFEVPLLNTAVLLASGVTVTWAHHSIMEGERKQAI 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 671759930 161 QALLITITLGIYFTLLQASEYFETSFTISDGVYGSTFFMATGFHGLHVIIGSTFLTVCFFRQLKFHFTSNHHFGF*KAAA 240
Cdd:MTH00130 161 QSLTLTILLGFYFTFLQAMEYYEAPFTIADGVYGSTFFVATGFHGLHVIIGSTFLAVCLLRQIQYHFTSEHHFGF-EAAA 239
|
250 260
....*....|....*....|..
gi 671759930 241 WYWHFVDVVWLFLYVSIYWWGS 262
Cdd:MTH00130 240 WYWHFVDVVWLFLYISIYWWGS 261
|
|
| COX3 |
MTH00075 |
cytochrome c oxidase subunit III; Provisional |
1-262 |
2.22e-151 |
|
cytochrome c oxidase subunit III; Provisional
Pssm-ID: 177146 Cd Length: 261 Bit Score: 422.62 E-value: 2.22e-151
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 671759930 1 MTHQTHAYHMVNPSPWPLTGALSALLMTSGLAMWFHFNNTTLLSMGMLTNLLTMYQWWRDIVREGTFQGHHTSIVQKGLR 80
Cdd:MTH00075 1 MAHQAHAFHMVDPSPWPLTGAIAALLLTSGLAMWFHFGSMIIMLLGLIIMLLTMFQWWRDIVREGTFQGHHTPPVQKGLR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 671759930 81 YGMVLFIISEIFFFAGFFWAFYHSSLAPTPELGGCWPPTGIHPLNPLEVPLLNTAVLLASGVSITWAHHSLMEGDRTHML 160
Cdd:MTH00075 81 YGMILFITSEVFFFLGFFWAFYNSSLAPTPELGECWPPTGITPLDPFEVPLLNTAVLLASGVTVTWAHHSIMQGNRKEAI 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 671759930 161 QALLITITLGIYFTLLQASEYFETSFTISDGVYGSTFFMATGFHGLHVIIGSTFLTVCFFRQLKFHFTSNHHFGF*KAAA 240
Cdd:MTH00075 161 QSLALTIILGLYFTLLQAMEYYEAPFTIADGVYGSTFFVATGFHGLHVIIGSLFLLVCLLRQINFHFTSQHHFGF-EAAA 239
|
250 260
....*....|....*....|..
gi 671759930 241 WYWHFVDVVWLFLYVSIYWWGS 262
Cdd:MTH00075 240 WYWHFVDVVWLFLYVSIYWWGS 261
|
|
| COX3 |
MTH00189 |
cytochrome c oxidase subunit III; Provisional |
2-262 |
3.43e-151 |
|
cytochrome c oxidase subunit III; Provisional
Pssm-ID: 177238 Cd Length: 260 Bit Score: 422.07 E-value: 3.43e-151
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 671759930 2 THQTHAYHMVNPSPWPLTGALSALLMTSGLAMWFHFNNTTLLSMGMLTNLLTMYQWWRDIVREGTFQGHHTSIVQKGLRY 81
Cdd:MTH00189 1 MHQAHPFHLVDPSPWPLTGAIAALLLTSGLAMWFHYNSFILLFLGLILLLLTMIQWWRDVVRESTFQGFHTPPVQKGLRY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 671759930 82 GMVLFIISEIFFFAGFFWAFYHSSLAPTPELGGCWPPTGIHPLNPLEVPLLNTAVLLASGVSITWAHHSLMEGDRTHMLQ 161
Cdd:MTH00189 81 GMILFITSEVFFFLGFFWAFFHSSLAPTVELGMCWPPTGIEPLNPFEVPLLNTAVLLSSGVTVTWAHHSLMEGNRKEAIQ 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 671759930 162 ALLITITLGIYFTLLQASEYFETSFTISDGVYGSTFFMATGFHGLHVIIGSTFLTVCFFRQLKFHFTSNHHFGF*KAAAW 241
Cdd:MTH00189 161 ALTLTVILGVYFTLLQAMEYYEAPFTIADSVYGSTFFVATGFHGLHVIIGSTFLLVCLLRQIQGHFTSSHHFGF-EAAAW 239
|
250 260
....*....|....*....|.
gi 671759930 242 YWHFVDVVWLFLYVSIYWWGS 262
Cdd:MTH00189 240 YWHFVDVVWLFLYVSIYWWGS 260
|
|
| COX3 |
MTH00155 |
cytochrome c oxidase subunit III; Provisional |
3-258 |
4.22e-141 |
|
cytochrome c oxidase subunit III; Provisional
Pssm-ID: 214439 Cd Length: 255 Bit Score: 396.09 E-value: 4.22e-141
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 671759930 3 HQTHAYHMVNPSPWPLTGALSALLMTSGLAMWFHFNNTTLLSMGMLTNLLTMYQWWRDIVREGTFQGHHTSIVQKGLRYG 82
Cdd:MTH00155 1 KKNHPFHLVDYSPWPLTGSIGAMTLTSGLIKWFHQFNMNLLILGLIITLLTMFQWWRDVIREGTFQGLHTKKVTKGLRWG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 671759930 83 MVLFIISEIFFFAGFFWAFYHSSLAPTPELGGCWPPTGIHPLNPLEVPLLNTAVLLASGVSITWAHHSLMEGDRTHMLQA 162
Cdd:MTH00155 81 MILFIVSEVFFFISFFWAFFHSSLSPNIELGMIWPPKGIIPFNPFQIPLLNTIILLSSGVTVTWAHHSLMENNYKQATQS 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 671759930 163 LLITITLGIYFTLLQASEYFETSFTISDGVYGSTFFMATGFHGLHVIIGSTFLTVCFFRQLKFHFTSNHHFGF*KAAAWY 242
Cdd:MTH00155 161 LFFTIILGIYFTMLQAYEYYEAPFTIADSVYGSTFFMATGFHGLHVIIGTTFLLVCLIRHLNNHFSSNHHFGF-EAAAWY 239
|
250
....*....|....*.
gi 671759930 243 WHFVDVVWLFLYVSIY 258
Cdd:MTH00155 240 WHFVDVVWLFLYISIY 255
|
|
| COX3 |
MTH00141 |
cytochrome c oxidase subunit III; Provisional |
6-262 |
8.33e-137 |
|
cytochrome c oxidase subunit III; Provisional
Pssm-ID: 177199 Cd Length: 259 Bit Score: 385.40 E-value: 8.33e-137
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 671759930 6 HAYHMVNPSPWPLTGALSALLMTSGLAMWFHFNNTTLLSMGMLTNLLTMYQWWRDIVREGTFQGHHTSIVQKGLRYGMVL 85
Cdd:MTH00141 4 NPFHLVEFSPWPLTGSIGALFLTVGLVSWFHGGSFLLLVLGLVLIVLTMFQWWRDIVRESTFQGFHTSKVQRGLRWGFIL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 671759930 86 FIISEIFFFAGFFWAFYHSSLAPTPELGGCWPPTGIHPLNPLEVPLLNTAVLLASGVSITWAHHSLMEGDRTHMLQALLI 165
Cdd:MTH00141 84 FIVSEVCFFFAFFWAYFHSSLAPSVEIGCCWPPVGIEPLNPFQVPLLNTAVLLASGVTVTWAHHSLMEGDYKSALQGLGL 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 671759930 166 TITLGIYFTLLQASEYFETSFTISDGVYGSTFFMATGFHGLHVIIGSTFLTVCFFRQLKFHFTSNHHFGF*kAAAWYWHF 245
Cdd:MTH00141 164 TIILGVYFTFLQAGEYYEASFSIADGVYGSTFFVLTGFHGLHVIIGTTFLLVCLVRLLLGHFSTNHHFGFE-AAAWYWHF 242
|
250
....*....|....*..
gi 671759930 246 VDVVWLFLYVSIYWWGS 262
Cdd:MTH00141 243 VDVVWLFLYLSIYWWGS 259
|
|
| COX3 |
pfam00510 |
Cytochrome c oxidase subunit III; |
6-262 |
3.10e-134 |
|
Cytochrome c oxidase subunit III;
Pssm-ID: 395410 Cd Length: 258 Bit Score: 379.06 E-value: 3.10e-134
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 671759930 6 HAYHMVNPSPWPLTGALSALLMTSGLAMWFHF--NNTTLLSMGMLTNLLTMYQWWRDIVREGTFQGHHTSIVQKGLRYGM 83
Cdd:pfam00510 1 HPFHMVSPSPWPLFGSFALLLLTSGLVLWFHGysGNMTLFIIALFSLLLTMYLWFRDIIREGTFLGDHTFAVQKGLNLGM 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 671759930 84 VLFIISEIFFFAGFFWAFYHSSLAPTPELGGCWPPTGIHPLNPLEVPLLNTAVLLASGVSITWAHHSLMEGDRTHMLQAL 163
Cdd:pfam00510 81 ILFIISEVFFFLGIFWAFFHSALSPTVELGAQWPPVGIHPVNPFEVPLLNTIILLSSGVTVTYAHHSLIEGNRKQALQGL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 671759930 164 LITITLGIYFTLLQASEYFETSFTISDGVYGSTFFMATGFHGLHVIIGSTFLTVCFFRQLKFHFTSNHHFGF*KAAAWYW 243
Cdd:pfam00510 161 ILTILLAVYFTGLQAMEYTEASFTISDGVYGSTFYFATGFHGLHVIIGTAFLAVCFLRLLKYHLTDNHHFGF-EAAILYW 239
|
250
....*....|....*....
gi 671759930 244 HFVDVVWLFLYVSIYWWGS 262
Cdd:pfam00510 240 HFVDVVWLFLYVSVYWWGS 258
|
|
| COX3 |
MTH00039 |
cytochrome c oxidase subunit III; Validated |
1-262 |
8.28e-134 |
|
cytochrome c oxidase subunit III; Validated
Pssm-ID: 177114 Cd Length: 260 Bit Score: 377.92 E-value: 8.28e-134
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 671759930 1 MTHQtHAYHMVNPSPWPLTGALSALLMTSGLAMWFHFNNTTLLSMGMLTNLLTMYQWWRDIVREGTFQGHHTSIVQKGLR 80
Cdd:MTH00039 1 MTHQ-HPYHLVDQSPWPLTAAIGALIMTSGLVLWFHGDSILLLLLGLLLLILTSINWWRDVIREATFQGMHTLIVINGLR 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 671759930 81 YGMVLFIISEIFFFAGFFWAFYHSSLAPTPELGGCWPPTGIHPLNPLEVPLLNTAVLLASGVSITWAHHSLMEGDRTHML 160
Cdd:MTH00039 80 YGMILFITSEVCFFFAFFWAFFHSSLAPTVEIGVSWPPTGINPINPFLVPLLNTAVLLSSGVTITWSHHSILEGNRTEAI 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 671759930 161 QALLITITLGIYFTLLQASEYFETSFTISDGVYGSTFFMATGFHGLHVIIGSTFLTVCFFRQLKFHFTSNHHFGF*KAAA 240
Cdd:MTH00039 160 QALFLTVLLGLYFTALQAWEYYDAPFTIADSVYGSTFFVATGFHGLHVIIGTTFLAVCLFRLINHHFSNNHHFGF-EAAA 238
|
250 260
....*....|....*....|..
gi 671759930 241 WYWHFVDVVWLFLYVSIYWWGS 262
Cdd:MTH00039 239 WYWHFVDVVWLFLYVCIYWWGS 260
|
|
| COX3 |
MTH00219 |
cytochrome c oxidase subunit III; Provisional |
1-262 |
1.74e-129 |
|
cytochrome c oxidase subunit III; Provisional
Pssm-ID: 214464 Cd Length: 262 Bit Score: 367.19 E-value: 1.74e-129
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 671759930 1 MTHQTHAYHMVNPSPWPLTGALSALLMTSGLAMWFHFNNTTLLSMGMLTNLLTMYQWWRDIVREGTFQGHHTSIVQKGLR 80
Cdd:MTH00219 2 MFFQTNPYHLVDYSPWPLTGSLGALMLTSGLVAWFHHYNLDLLILGLLIIVLTMIQWWRDVIRESTFMGLHTSKVSTGLR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 671759930 81 YGMVLFIISEIFFFAGFFWAFYHSSLAPTPELGGCWPPTGIHPLNPLEVPLLNTAVLLASGVSITWAHHSLMEGDRTHML 160
Cdd:MTH00219 82 IGMILFIVSEILFFFAFFWAFFHSSLAPTIELGSCWPPTGINPLNPFQVPLLNTAVLLASGVTVTWAHHSLMESNHKEAQ 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 671759930 161 QALLITITLGIYFTLLQASEYFETSFTISDGVYGSTFFMATGFHGLHVIIGSTFLTVCFFRQLKFHFTSNHHFGF*KAAA 240
Cdd:MTH00219 162 QGLLFTILLGLYFTMLQGMEYLEASFSISDSVYGTTFFVATGFHGLHVIIGTIFLFVCFMRGLMLHFSKNHHFGF-EAAA 240
|
250 260
....*....|....*....|..
gi 671759930 241 WYWHFVDVVWLFLYVSIYWWGS 262
Cdd:MTH00219 241 WYWHFVDVVWLFLYVSIYWWGS 262
|
|
| Cyt_c_Oxidase_III |
cd01665 |
Cytochrome c oxidase subunit III. Cytochrome c oxidase (CcO), the terminal oxidase in the ... |
18-260 |
1.30e-123 |
|
Cytochrome c oxidase subunit III. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. CcO catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Only subunits I and II are essential for function, but subunit III, which is also conserved, is believed to play a role in assembly of the multimer complex. Rhodobacter CcO subunit III stabilizes the integrity of the binuclear center in subunit I. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Subunit III contains bound phospholipids in several crystal structures and is proposed to contain a "lipid pool." These phospholipids are believed to intrinsic constituents similar to cofactors of the enzyme.
Pssm-ID: 238834 Cd Length: 243 Bit Score: 351.43 E-value: 1.30e-123
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 671759930 18 LTGALSALLMTSGLAMWFH-FNNTTLLSMGMLTNLLTMYQWWRDIVREGTFQGHHTSIVQKGLRYGMVLFIISEIFFFAG 96
Cdd:cd01665 1 ILGSFGLLLLALGLVLWMHgYGGPLLLFLGLILLILTMFLWWRDVIRESTFGGHHTKKVQKGLRLGMILFILSEVMFFFS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 671759930 97 FFWAFYHSSLAPTPELGGCWPPTGIHPLNPLEVPLLNTAVLLASGVSITWAHHSLMEGDRTHMLQALLITITLGIYFTLL 176
Cdd:cd01665 81 FFWAFFHSSLSPSVELGGTWPPVGIEPLNPFGIPLLNTIILLSSGATVTWAHHALLLGNRKKAILGLILTILLGVYFTGL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 671759930 177 QASEYFETSFTISDGVYGSTFFMATGFHGLHVIIGSTFLTVCFFRQLKFHFTSNHHFGF*KAAAWYWHFVDVVWLFLYVS 256
Cdd:cd01665 161 QAYEYYEASFTISDSVYGSTFFMLTGFHGLHVIIGTIFLTVCLIRLLKGHFSSNHHLGF-EAAIWYWHFVDVVWLFLFVF 239
|
....
gi 671759930 257 IYWW 260
Cdd:cd01665 240 VYWW 243
|
|
| COX3 |
MTH00009 |
cytochrome c oxidase subunit III; Validated |
6-262 |
1.91e-117 |
|
cytochrome c oxidase subunit III; Validated
Pssm-ID: 177101 Cd Length: 259 Bit Score: 336.81 E-value: 1.91e-117
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 671759930 6 HAYHMVNPSPWPLTGALSALLMTSGLAMWFHFNNTTLLSMGMLTNLLTMYQWWRDIVREGTFQGHHTSIVQKGLRYGMVL 85
Cdd:MTH00009 4 QPFHLVEYSPWPLTGSIGAFTLTVGLASWFHGYGTLCLILGLIIIILTMIQWWRDVIREGTYMGHHTSYVTKGLRWGMIL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 671759930 86 FIISEIFFFAGFFWAFYHSSLAPTPELGGCWPPTGIHPLNPLEVPLLNTAVLLASGVSITWAHHSLMEGDRTHMLQALLI 165
Cdd:MTH00009 84 FIASEVMFFFAFFWAFFHSSLAPTPELGCSWPPTGIEPLNPFSVPLLNTAVLLASGVTVTWAHHSLIEGDRPEATQALIL 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 671759930 166 TITLGIYFTLLQASEYFETSFTISDGVYGSTFFMATGFHGLHVIIGSTFLTVCFFRQLKFHFTSNHHFGF*KAAAWYWHF 245
Cdd:MTH00009 164 TVLLGAYFTFLQAGEYIEAPFTIADSVYGSTFFVATGFHGLHVLIGSSFLFVCLLRTWSHHFSTGHHFGF-EAAAWYWHF 242
|
250
....*....|....*..
gi 671759930 246 VDVVWLFLYVSIYWWGS 262
Cdd:MTH00009 243 VDVVWIFLYLCIYWWGS 259
|
|
| COX3 |
MTH00024 |
cytochrome c oxidase subunit III; Validated |
1-262 |
5.57e-117 |
|
cytochrome c oxidase subunit III; Validated
Pssm-ID: 214403 Cd Length: 261 Bit Score: 335.57 E-value: 5.57e-117
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 671759930 1 MTHQTHAYHMVNPSPWPLTGALSALLMTSGLAMWFHFNNTTLLSMGMLTNLLTMYQWWRDIVREGTFQGHHTSIVQKGLR 80
Cdd:MTH00024 1 MSKLYHPYHLVEPSPWPFLGAGGAFFITVGSVVYFHYGFSFILYLGLLVIVGVMFVWWQDVIRESTFQGHHSLIVKQGLK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 671759930 81 YGMVLFIISEIFFFAGFFWAFYHSSLAPTPELGGCWPPTGIHPLNPLEVPLLNTAVLLASGVSITWAHHSLMEGDRTHML 160
Cdd:MTH00024 81 YGMLLFILSEVLFFFSFFWAFFHSSLAPAVELGVVWPPQGINPLNPFSVPLLNTAVLLSSGATVTWAHHAIISGKRKEAI 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 671759930 161 QALLITITLGIYFTLLQASEYFETSFTISDGVYGSTFFMATGFHGLHVIIGSTFLTVCFFRQLKFHFTSNHHFGF*KAAA 240
Cdd:MTH00024 161 LGLFLTVFLGVLFTGLQAIEYYEAPFAISDSVYGSTFFVATGFHGLHVIIGTTFLFVCLLRLLSNQFTRRQHVGF-EAAS 239
|
250 260
....*....|....*....|..
gi 671759930 241 WYWHFVDVVWLFLYVSIYWWGS 262
Cdd:MTH00024 240 WYWHFVDVVWLFLYLCIYWWGS 261
|
|
| COX3 |
MTH00052 |
cytochrome c oxidase subunit III; Provisional |
1-262 |
3.72e-116 |
|
cytochrome c oxidase subunit III; Provisional
Pssm-ID: 164623 Cd Length: 262 Bit Score: 333.30 E-value: 3.72e-116
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 671759930 1 MTHQTHAYHMVNPSPWPLTGALSALLMTSGLAMWFHFNNTTLLSMGMLTNLLTMYQWWRDIVREGTFQGHHTSIVQKGLR 80
Cdd:MTH00052 2 MQQYYHPYHLVDPSPWPYIGGCGALFTTVGGVMYFHYSQSWVLILGLITIIFTMVVWWRDVIRESTYQGHHTLIVKQGLK 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 671759930 81 YGMVLFIISEIFFFAGFFWAFYHSSLAPTPELGGCWPPTGIHPLNPLEVPLLNTAVLLASGVSITWAHHSLMEGDRTHML 160
Cdd:MTH00052 82 YGMILFIVSEVCLFFSFFWAFFHSSLAPTIEIGAVWPPRGVDPLNPFSVPLLNTAVLLSSGATVTWAHHGIISGKRKEAI 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 671759930 161 QALLITITLGIYFTLLQASEYFETSFTISDGVYGSTFFMATGFHGLHVIIGSTFLTVCFFRQLKFHFTSNHHFGF*KAAA 240
Cdd:MTH00052 162 IGLALTVALGLLFTGLQAMEYYEAPFTISDSVYGSTFFVTTGAHGGHVLIGSSFLLVCLFRLINHQFTRHHHFGF-EAAA 240
|
250 260
....*....|....*....|..
gi 671759930 241 WYWHFVDVVWLFLYVSIYWWGS 262
Cdd:MTH00052 241 WYWHFVDVVWLFLFIFMYWWGS 262
|
|
| COX3 |
MTH00028 |
cytochrome c oxidase subunit III; Provisional |
1-262 |
6.05e-99 |
|
cytochrome c oxidase subunit III; Provisional
Pssm-ID: 214406 Cd Length: 297 Bit Score: 291.20 E-value: 6.05e-99
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 671759930 1 MTHQTHAYHMVNPSPWPLTGALSALLMTSGLAMWFHFNNTTLLSMGMLTNLLTMYQWWRDIVREGTFQGHHTSIVQKGLR 80
Cdd:MTH00028 1 MSLVYHPYHLVDPSPWPFVGASGAFLFTSGAVILFHYSDYRLALTGLFLIIITASAWWRDVIREGTHQGHHTQIVVRGLK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 671759930 81 YGMVLFIISEIFFFAGFFWAFYHSSLAPTPELGGCWPPTGIHPLNPLEVPLLNTAVLLASGVSITWAHHSLMEGD----- 155
Cdd:MTH00028 81 LGMLLFILSEVCLFFAFFWAFFHSSLAPSVELGSVWPPKGIEALDPFAVPLLNTTILLSSGATVTWAHHAIIGTGnpasl 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 671759930 156 -------------------------------RTHMLQALLITITLGIYFTLLQASEYFETSFTISDGVYGSTFFMATGFH 204
Cdd:MTH00028 161 ekgtqgiegpnpsngappdpqkgptfllsdfRTNAVIGLLMTILLGIIFTGLQAFEYKEASFAISDSVYGSTFFMLTGTH 240
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 671759930 205 GLHVIIGSTFLTVCFFRQLKFHFTSNHHFGF*KAAAWYWHFVDVVWLFLYVSIYWWGS 262
Cdd:MTH00028 241 GLHVLVGTTFLIVCFIRLLSNQFTNSHHLGL-EAAIWYWHFVDVVWLFLYVFVYWWGS 297
|
|
| PLN02194 |
PLN02194 |
cytochrome-c oxidase |
4-261 |
7.44e-88 |
|
cytochrome-c oxidase
Pssm-ID: 177845 Cd Length: 265 Bit Score: 261.91 E-value: 7.44e-88
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 671759930 4 QTHAYHMVNPSPWPLTGALSALLMTSGLAMWFH--FNNTTLLSMGMLTNLLTMYQWWRDIVREGTFQGHHTSIVQKGLRY 81
Cdd:PLN02194 5 QRHSYHLVDPSPWPISGSLGALATTVGGVMYMHpfQGGARLLSLGLIFILYTMFVWWRDVLRESTLEGHHTKVVQLGPRY 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 671759930 82 GMVLFIISEIFFFAGFFWAFYHSSLAPTPELGGCWPPTGIHPLNPLEVPLLNTAVLLASGVSITWAHHSLMEGDRTHMLQ 161
Cdd:PLN02194 85 GSILFIVSEVMFFFAFFWASSHSSLAPAVEIGGIWPPKGIEVLDPWEIPFLNTPILPSSGAAVTWAHHAILAGKEKRAVY 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 671759930 162 ALLITITLGIYFTLLQASEYFETSFTISDGVYGSTFFMATGFHGLHVIIGSTFLTVCFFRQLKFHFTSNHHFGF*KAAAW 241
Cdd:PLN02194 165 ALVATVLLALVFTGFQGMEYYQAPFTISDSIYGSTFFLATGFHGFHVIIGTLFLIICGIRQYLGHLTKEHHVGF-EAAAW 243
|
250 260
....*....|....*....|
gi 671759930 242 YWHFVDVVWLFLYVSIYWWG 261
Cdd:PLN02194 244 YWHFVDVVWLFLFVSIYWWG 263
|
|
| COX3 |
MTH00083 |
cytochrome c oxidase subunit III; Provisional |
6-262 |
1.04e-72 |
|
cytochrome c oxidase subunit III; Provisional
Pssm-ID: 177150 Cd Length: 256 Bit Score: 222.91 E-value: 1.04e-72
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 671759930 6 HAYHMVNPSPWPLTGALSALLMTSGLAMWFHFNNTTLLSMGMLTNLLTMYQWWRDIVREGtFQGHHTSIVQKGLRYGMVL 85
Cdd:MTH00083 3 HNFHILSLSSYPYMMFFSSLGLTSSLVVFFKYGLFYSFFFSLLYLLFISFLWGKDISMEG-LSGYHNFFVMDGFKFGMIL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 671759930 86 FIISEIFFFAGFFWAFYHSSLAPTPELGGCWPPTGIHPLNPLEVPLLNTAVLLASGVSITWAHHSLMEGDRThMLQALLI 165
Cdd:MTH00083 82 FIFSEFMFFFSIFWTFFDAALVPVHELGGVWSPIGIHLVNYLGVPLLNTIILLSSGVSVTWSHHSLCLSNKS-CTNSLLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 671759930 166 TITLGIYFTLLQASEYFETSFTISDGVYGSTFFMATGFHGLHVIIGSTFLTVCFFRQLKFHFTSNHHFGF*KAAAWYWHF 245
Cdd:MTH00083 161 TCFLGLYFTSFQLMEYKEASFSISDSIYGSIFYLGTGFHGIHVLCGGLFLLFNLLRLLKSHFNYNHHLGL-EFAILYWHF 239
|
250
....*....|....*..
gi 671759930 246 VDVVWLFLYVSIYWWGS 262
Cdd:MTH00083 240 VDVVWLFLFVFVYWWSY 256
|
|
| Heme_Cu_Oxidase_III_like |
cd00386 |
Heme-copper oxidase subunit III. Heme-copper oxidases are transmembrane protein complexes in ... |
71-260 |
5.36e-62 |
|
Heme-copper oxidase subunit III. Heme-copper oxidases are transmembrane protein complexes in the respiratory chains of prokaryotes and mitochondria which couple the reduction of molecular oxygen to water to, proton pumping across the membrane. The heme-copper oxidase superfamily is diverse in terms of electron donors, subunit composition, and heme types. This superfamily includes cytochrome c and ubiquinol oxidases. Bacterial oxidases typically contain 3 or 4 subunits in contrast to the 13 subunit bovine cytochrome c oxidase (CcO). Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Subunits I, II and III of ubiquinol oxidase are homologous to the corresponding subunits in CcO. This group additionally contains proteins which are fusions between subunits I and III, such as Sulfolobus acidocaldarius SoxM, a subunit of the SoxM terminal oxidase complex. It also includes NorE which has been speculated to be a subunit of nitric oxide reductase. Some archaebacterial cytochrome oxidases lack subunit III. Although not required for catalytic activity, subunit III is believed to play a role in assembly of the multimer complex. Rhodobacter CcO subunit III stabilizes the integrity of the binuclear center in subunit I. It has been proposed that archaea acquired heme-copper oxidases through gene transfer from gram-positive bacteria.
Pssm-ID: 238227 Cd Length: 183 Bit Score: 192.80 E-value: 5.36e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 671759930 71 HTSIVQKGLRYGMVLFIISEIFFFAGFFWAFYHSSLAPTPELGgcwpptgiHPLNPLEVPLLNTAVLLASGVSITWAHHS 150
Cdd:cd00386 1 HTASVRSGGRLGMWLFILSEVMLFGSFFWAYFHSRLSPPVEFG--------AGLDPLDLPLLNTNTLLLSGSSVTWAHAS 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 671759930 151 LM--EGDRTHMLQALLITITLGIYFTLLQASEYFETSFTISDGVYGSTFFMATGFHGLHVIIGSTFLTVCFFRQLKFHFT 228
Cdd:cd00386 73 LAarRGNRKKARLWLLLTILLGLAFLGLQAYEYSHLIFTISDSVFGSTFFLLTGFHGLHVIIGLIFLLVVLIRLRRGHFT 152
|
170 180 190
....*....|....*....|....*....|..
gi 671759930 229 SNHHFGF*kAAAWYWHFVDVVWLFLYVSIYWW 260
Cdd:cd00386 153 PRHHLGLE-AAALYWHFVDVVWLFLFPLVYLW 183
|
|
| CyoC |
COG1845 |
Heme/copper-type cytochrome/quinol oxidase, subunit 3 [Energy production and conversion]; |
70-260 |
1.84e-44 |
|
Heme/copper-type cytochrome/quinol oxidase, subunit 3 [Energy production and conversion];
Pssm-ID: 441450 Cd Length: 192 Bit Score: 148.46 E-value: 1.84e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 671759930 70 HHTSIVQKGLRYGMVLFIISEIFF-FAGFFWAFYHSSLAPtpelggcWPPTGIHPLNPLeVPLLNTAVLLASGVSITWAH 148
Cdd:COG1845 7 PHAPERRSPGKLGMWLFLASEVMLfAALFAAYFVLRASAP-------DWPAGAELLDLP-LPLINTLLLLLSSFTVALAV 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 671759930 149 HSLMEGDRTHMLQALLITITLGIYFTLLQASEY---FETSFTISDGVYGSTFFMATGFHGLHVIIGSTFLTVCFFRQLKF 225
Cdd:COG1845 79 RAARRGDRKGLRLWLLLTLLLGLAFLGLQAYEYshlIAEGLTPTSNAFGSFFFLLTGFHGLHVIIGLIWLLVVLVRALRG 158
|
170 180 190
....*....|....*....|....*....|....*
gi 671759930 226 HFTSNHHFGF*KAAAWYWHFVDVVWLFLYVSIYWW 260
Cdd:COG1845 159 GFTPENHTGV-EAAALYWHFVDVVWIFLFALVYLL 192
|
|
| NorE_like |
cd02862 |
NorE_like subfamily of heme-copper oxidase subunit III. Heme-copper oxidases include ... |
131-258 |
4.37e-18 |
|
NorE_like subfamily of heme-copper oxidase subunit III. Heme-copper oxidases include cytochrome c and ubiquinol oxidases. Alcaligenes faecalis norE is found in a gene cluster containing norCB. norCB encodes the cytochrome c and cytochrome b subunits of nitric oxide reductase (NOR). Based on this and on its similarity to subunit III of cytochrome c oxidase (CcO) and ubiquinol oxidase, NorE has been speculated to be a subunit of NOR.
Pssm-ID: 239213 Cd Length: 186 Bit Score: 79.59 E-value: 4.37e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 671759930 131 LLNTAVLLASGVSITWAHHSLMEGDRTHMLQALLITITLGIYFTLLQASEY---FETSFTISDGVYGSTFFMATGFHGLH 207
Cdd:cd02862 55 ALNTLVLLTSSFTVALAVRAARAGRRRRARRWLAAAVLLGLVFLVIKYFEYahkIAAGIDPDAGLFFTLYFLLTGFHLLH 134
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 671759930 208 VIIGSTFLTVCFFRQLKFHFTSNHHfGF*KAAAWYWHFVDVVWLFLYVSIY 258
Cdd:cd02862 135 VLIGLGILLWVAWRARRGRYSARDY-EGVEAAALYWHMVDLVWIVLFPLLY 184
|
|
| Heme_Cu_Oxidase_III_1 |
cd02864 |
Heme-copper oxidase subunit III subfamily. Heme-copper oxidases are transmembrane protein ... |
80-260 |
2.40e-17 |
|
Heme-copper oxidase subunit III subfamily. Heme-copper oxidases are transmembrane protein complexes in the respiratory chains of prokaryotes and mitochondria which couple the reduction of molecular oxygen to water to, proton pumping across the membrane. The heme-copper oxidase superfamily is diverse in terms of electron donors, subunit composition, and heme types. This superfamily includes cytochrome c and ubiquinol oxidases. Bacterial oxidases typically contain 3 or 4 subunits in contrast to the 13 subunit bovine cytochrome c oxidase (CcO). Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Subunits I, II and III of ubiquinol oxidase are homologous to the corresponding subunits in CcO. Although not required for catalytic activity, subunit III is believed to play a role in assembly of the multimer complex. Rhodobacter CcO subunit III stabilizes the integrity of the binuclear center in subunit I. It has been proposed that Archaea acquired heme-copper oxidases through gene transfer from Gram-positive bacteria.
Pssm-ID: 239215 Cd Length: 202 Bit Score: 77.93 E-value: 2.40e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 671759930 80 RYGMVLFIISEIFFFAGFFWAfYHSSLAPTPELGGCWPPTGIHPLNPLEVPL----LNTAVLLASGVSITWAHHSLMEGD 155
Cdd:cd02864 10 KAMMWFFLLSDAFIFSSFLIA-YMTARISTTEPWPLPSDVFALRIGHFNIPLvliaIMTFILITSSGTMAMAVNFGYRGN 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 671759930 156 RTHMLQALLITITLGIYFTLLQASEYfeTSFTISDGV-----------YGSTFFMATGFHGLHVIIGSTFLTVCFFRQLK 224
Cdd:cd02864 89 RKAAARLMLATALLGATFVGMQAFEW--TKLIVEEGVrpwgnpwgaaqFGASFFMITGFHGTHVTIGVIYLIIIARKVWR 166
|
170 180 190
....*....|....*....|....*....|....*.
gi 671759930 225 FHFTSNHHFGF*KAAAWYWHFVDVVWLFLYVSIYWW 260
Cdd:cd02864 167 GKYQRIGRYEIVEIAGLYWHFVDLVWVFIFAFFYLW 202
|
|
| COX3 |
MTH00049 |
cytochrome c oxidase subunit III; Validated |
126-258 |
3.34e-16 |
|
cytochrome c oxidase subunit III; Validated
Pssm-ID: 177124 Cd Length: 215 Bit Score: 74.95 E-value: 3.34e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 671759930 126 PLEVPLLNTAVLLASGVSITwAHHSLMEGDRTHMLqaLLITITLGIYFTLLQASEYFETSFTISDGVYGSTFFMATGFHG 205
Cdd:MTH00049 89 SLEIPFVGCFLLLGSSITVT-AYHHLLGWKYCDLF--LYLTILLGLLFVVLQVFEFEESGVNSLDSSYYASCFCTVGLHF 165
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 671759930 206 LHVIIGSTFLTVCFFRQLKFHFTSNHHFgf*kaAAWYWHFVDVVWLFLYVSIY 258
Cdd:MTH00049 166 SHVVLGVVGLSTLLLVGSSSFGVYRSTV-----LTWYWHFVDYIWLLVYLIVY 213
|
|
| Heme_Cu_Oxidase_III_2 |
cd02865 |
Heme-copper oxidase subunit III subfamily. Heme-copper oxidases are transmembrane protein ... |
116-260 |
1.96e-15 |
|
Heme-copper oxidase subunit III subfamily. Heme-copper oxidases are transmembrane protein complexes in the respiratory chains of prokaryotes and mitochondria which couple the reduction of molecular oxygen to water to, proton pumping across the membrane. The heme-copper oxidase superfamily is diverse in terms of electron donors, subunit composition, and heme types. This superfamily includes cytochrome c and ubiquinol oxidases. Bacterial oxidases typically contain 3 or 4 subunits in contrast to the 13 subunit bovine cytochrome c oxidase (CcO). Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Subunits I, II and III of ubiquinol oxidase are homologous to the corresponding subunits in CcO. Although not required for catalytic activity, subunit III is believed to play a role in assembly of the multimer complex. Rhodobacter CcO subunit III stabilizes the integrity of the binuclear center in subunit I. It has been proposed that Archaea acquired heme-copper oxidases through gene transfer from Gram-positive bacteria.
Pssm-ID: 239216 Cd Length: 184 Bit Score: 72.40 E-value: 1.96e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 671759930 116 WPPTGIHPLNPLevPLLNTAVLLASGVSITWAHHSLMEGDRTHMLQALLITITLGIYFTLLQASEYFETSF---TISDGV 192
Cdd:cd02865 40 WQPGAPLPLPNL--LSLNTAVLAASSVAMQWARRAARRNRRVLARLGLALAGALALAFLAGQLLAWHALNDagyGPTSNP 117
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 671759930 193 YGSTFFMATGFHGLHVIIGSTFLTVCFFRQLKFHFTSNHHFGF*KAAAwYWHFVDVVWLFLYVSIYWW 260
Cdd:cd02865 118 AGSFFYLLTGLHGLHVIGGLVALAIVLAGLIRGHYGPRRRLPVELCAL-YWHFLLLVWLVLLALLYGT 184
|
|
| Ubiquinol_oxidase_III |
cd02863 |
Ubiquinol oxidase subunit III subfamily. Ubiquinol oxidase, the terminal oxidase in the ... |
120-258 |
4.23e-14 |
|
Ubiquinol oxidase subunit III subfamily. Ubiquinol oxidase, the terminal oxidase in the respiratory chains of aerobic bacteria, is a multi-chain transmembrane protein located in the cell membrane. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Ubiquinol oxidases feature four subunits in contrast to the 13 subunit bovine cytochrome c oxidase (CcO). Subunits I, II, and III of bovine CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Subunits I, II and III of ubiquinol oxidase are homologous to the corresponding subunits in bovine CcO. Although not required for catalytic activity, subunit III appears to be involved in assembly of the multimer complex.
Pssm-ID: 239214 Cd Length: 186 Bit Score: 68.81 E-value: 4.23e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 671759930 120 GIHPLNPLEVPLLNTAVLLASGVSITWAHHSLMEGDRTHMLQALLITITLGIYFTLLQASEYFE---TSFTISDGVYGST 196
Cdd:cd02863 43 PGHELFELPLVFIETFLLLLSSFTCGLAMIAMNKNNKKKVILWLIITFLLGLGFVGMEIYEFHHliaEGAGPDRSAFLSA 122
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 671759930 197 FFMATGFHGLHVIIGSTFLTVCFFrQLKFHFTSNHHFGF*KAAAWYWHFVDVVWLFLYVSIY 258
Cdd:cd02863 123 FFTLVGTHGLHVTFGLIWILVMII-QLKKRGLTPDTARRLFCLSLFWHFLDIVWIFVFTVVY 183
|
|
| QoxC |
TIGR02897 |
cytochrome aa3 quinol oxidase, subunit III; This family (QoxC) encodes subunit III of the ... |
127-261 |
4.23e-10 |
|
cytochrome aa3 quinol oxidase, subunit III; This family (QoxC) encodes subunit III of the aa3-type quinone oxidase, one of several bacterial terminal oxidases. This complex couples oxidation of reduced quinones with the reduction of molecular oxygen to water and the pumping of protons to form a proton gradient utilized for ATP production. aa3-type oxidases contain two heme a cofactors as well as copper atoms in the active site. [Energy metabolism, Electron transport]
Pssm-ID: 131943 Cd Length: 190 Bit Score: 57.56 E-value: 4.23e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 671759930 127 LEVPLLNTAVLLASGVSITWAHHSLMEGDRTHMLQALLITITLG---IYFTLLQASEYFETSFTISDGVYGSTFFMATGF 203
Cdd:TIGR02897 52 LPLVLIMTFLLLFSSFTCGIAIYEMRKENQKLMMFWMIITLLLGagfVGFEIYEFAHYASEGVTPQIGSYWSSFFVLLGT 131
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 671759930 204 HGLHVIIGsTFLTVCFFRQLKFHFTSNHHFGF*KAAAWYWHFVDVVWLFLYVSIYWWG 261
Cdd:TIGR02897 132 HGCHVTLG-IVWAICLLIQIQRRGLTPYTAPKVFIVSLYWHFLDVVWVFIFTAVYLIG 188
|
|
| PRK10663 |
PRK10663 |
cytochrome o ubiquinol oxidase subunit III; Provisional |
131-262 |
4.42e-04 |
|
cytochrome o ubiquinol oxidase subunit III; Provisional
Pssm-ID: 182628 Cd Length: 204 Bit Score: 40.15 E-value: 4.42e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 671759930 131 LLNTAVLLASGVSITWAHHSLMEGDRTHMLQALLITITLGIYFTllqASEYFETSFTISDGvYG-------STFFMATGF 203
Cdd:PRK10663 70 LVETFLLLFSSITYGMAAIAMYKNNKSQVISWLALTFLFGAGFI---GMEIYEFHHLIVEG-MGpdrsgflSAFFALVGT 145
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 671759930 204 HGLHVIIGSTFLTVCFFRQLKFHFTSNHHFGF*kAAAWYWHFVDVVWLFLYVSIYWWGS 262
Cdd:PRK10663 146 HGLHVTSGLIWMAVLMVQVARRGLTSTNRTRIM-CLSLFWHFLDVVWICVFTVVYLMGA 203
|
|
| |
