NCBI Conserved Domain Search

Conserved domains on [gi|67090530|gb|AAY67643|]

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ATP synthase F0 subunit 6, partial (mitochondrion) [Pachyornis mappini]

Protein Classification

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List of domain hits

Name

Accession

Description

Interval

E-value

ATP-synt_Fo_a_6 super family

cl00413

ATP synthase Fo complex, subunit 6 (eukaryotes) and subunit a (prokaryotes); Bacterial forms ...

1-18

2.14e-06

ATP synthase Fo complex, subunit 6 (eukaryotes) and subunit a (prokaryotes); Bacterial forms are designated as ATP synthase, Fo complex, subunit a; eukaryotic (chloroplast and mitochondrial) forms are designated as ATP synthase, Fo complex, subunit 6. The F-ATP synthases (also called FoF1-ATPases) consist of two structural domains: F1 (factor one) complex containing the soluble catalytic core, and Fo (oligomycin sensitive factor) complex containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. F-ATP synthases are primarily found in the inner membranes of eukaryotic mitochondria, in the thylakoid membranes of chloroplasts or in the plasma membranes of bacteria. F-ATP synthase has also been found in the archaea Methanosarcina acetivorans. F-ATP synthases are the primary producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). Alternatively, under conditions of low driving force, ATP synthases function as ATPases, thus generating a transmembrane proton or Na(+) gradient at the expense of energy derived from ATP hydrolysis.

The actual alignment was detected with superfamily member MTH00120:

Pssm-ID: 469762 Cd Length: 227 Bit Score: 39.81 E-value: 2.14e-06

                         10
                 ....*....|....*...
gi 67090530    1 IQAYVFVLLLSLYLQENI 18
Cdd:MTH00120 210 IQAYVFVLLLSLYLQENT 227

Name

Accession

Description

Interval

E-value

ATP6

MTH00120

ATP synthase F0 subunit 6; Provisional

1-18

2.14e-06

ATP synthase F0 subunit 6; Provisional

Pssm-ID: 177181 Cd Length: 227 Bit Score: 39.81 E-value: 2.14e-06

                         10
                 ....*....|....*...
gi 67090530    1 IQAYVFVLLLSLYLQENI 18
Cdd:MTH00120 210 IQAYVFVLLLSLYLQENT 227

Name

Accession

Description

Interval

E-value

ATP6

MTH00120

ATP synthase F0 subunit 6; Provisional

1-18

2.14e-06

ATP synthase F0 subunit 6; Provisional

Pssm-ID: 177181 Cd Length: 227 Bit Score: 39.81 E-value: 2.14e-06

                         10
                 ....*....|....*...
gi 67090530    1 IQAYVFVLLLSLYLQENI 18
Cdd:MTH00120 210 IQAYVFVLLLSLYLQENT 227

ATP6

MTH00132

ATP synthase F0 subunit 6; Provisional

1-18

6.21e-06

ATP synthase F0 subunit 6; Provisional

Pssm-ID: 177190 Cd Length: 227 Bit Score: 38.70 E-value: 6.21e-06

                         10
                 ....*....|....*...
gi 67090530    1 IQAYVFVLLLSLYLQENI 18
Cdd:MTH00132 210 IQAYVFVLLLSLYLQENV 227

ATP6

MTH00073

ATP synthase F0 subunit 6; Provisional

1-18

2.37e-05

ATP synthase F0 subunit 6; Provisional

Pssm-ID: 177144 Cd Length: 227 Bit Score: 36.87 E-value: 2.37e-05

                         10
                 ....*....|....*...
gi 67090530    1 IQAYVFVLLLSLYLQENI 18
Cdd:MTH00073 210 IQAYVFVLLLSLYLQENV 227

ATP6

MTH00101

ATP synthase F0 subunit 6; Validated

1-17

2.45e-03

ATP synthase F0 subunit 6; Validated

Pssm-ID: 177163 Cd Length: 226 Bit Score: 31.46 E-value: 2.45e-03

                         10
                 ....*....|....*..
gi 67090530    1 IQAYVFVLLLSLYLQEN 17
Cdd:MTH00101 209 IQAYVFTLLVSLYLHDN 225

ATP6

MTH00179

ATP synthase F0 subunit 6; Provisional

1-17

4.52e-03

ATP synthase F0 subunit 6; Provisional

Pssm-ID: 177230 Cd Length: 227 Bit Score: 30.69 E-value: 4.52e-03

                         10
                 ....*....|....*..
gi 67090530    1 IQAYVFVLLLSLYLQEN 17
Cdd:MTH00179 210 IQAYVFVLLLSLYLQEN 226

Blast search parameters

Data Source:	Precalculated data, version = cdd.v.3.21
Preset Options:	Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01