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Conserved domains on  [gi|67090324|gb|AAY67540|]
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cytochrome b, partial (mitochondrion) [Dinornis novaezealandiae]

Protein Classification

cytochrome b family protein( domain architecture ID 581032)

cytochrome b family protein such as formate dehydrogenase subunit gamma or cytochrome b, a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.

Gene Ontology:  GO:0046872|GO:0016491

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Cytochrome_b_N super family cl23723
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-77 1.38e-57

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


The actual alignment was detected with superfamily member MTH00119:

Pssm-ID: 474033 [Multi-domain]  Cd Length: 380  Bit Score: 180.10  E-value: 1.38e-57
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 67090324    1 DTSLAFSSVAHTCRNVQYGWLIRNLHANGASFFFICIYLHIGRGIYYGSYLYKETWNTGVILLLTLMATAFVGYVLP 77
Cdd:MTH00119  59 DISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLP 135
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-77 1.38e-57

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 180.10  E-value: 1.38e-57
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 67090324    1 DTSLAFSSVAHTCRNVQYGWLIRNLHANGASFFFICIYLHIGRGIYYGSYLYKETWNTGVILLLTLMATAFVGYVLP 77
Cdd:MTH00119  59 DISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLP 135
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-77 3.88e-31

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 107.45  E-value: 3.88e-31
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 67090324   1 DTSLAFSSVAHTCRNVQYGWLIRNLHANGASFFFICIYLHIGRGIYYGSY--LYKETWNTGVILLLTLMATAFVGYVLP 77
Cdd:cd00284  50 DVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLP 128
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-77 4.77e-27

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 96.68  E-value: 4.77e-27
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 67090324     1 DTSLAFSSVAHTCRNVQYGWLIRNLHANGASFFFICIYLHIGRGIYYG--SYLYKETWNTGVILLLTLMATAFVGYVLP 77
Cdd:pfam00033  41 DVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLP 119
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-77 2.20e-26

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 98.71  E-value: 2.20e-26
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67090324   1 DTSLAFSSVAHTCRNVQYGWLIRNLHANGASFFFICIYLHIGRGIYYGSylYKE----TWNTGVILLLTLMATAFVGYVL 76
Cdd:COG1290  67 SASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGA--YKKprelNWIIGVLLLLLTMAEAFTGYSL 144


                .
gi 67090324  77 P 77
Cdd:COG1290 145 P 145
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-77 1.38e-57

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 180.10  E-value: 1.38e-57
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 67090324    1 DTSLAFSSVAHTCRNVQYGWLIRNLHANGASFFFICIYLHIGRGIYYGSYLYKETWNTGVILLLTLMATAFVGYVLP 77
Cdd:MTH00119  59 DISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLP 135
CYTB MTH00074
cytochrome b; Provisional
 1-77 7.43e-52

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 165.62  E-value: 7.43e-52
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 67090324    1 DTSLAFSSVAHTCRNVQYGWLIRNLHANGASFFFICIYLHIGRGIYYGSYLYKETWNTGVILLLTLMATAFVGYVLP 77
Cdd:MTH00074  59 DTSSAFSSVAHICRDVNYGWLMRNIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLP 135
CYTB MTH00131
cytochrome b; Provisional
 1-77 1.73e-51

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 164.44  E-value: 1.73e-51
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 67090324    1 DTSLAFSSVAHTCRNVQYGWLIRNLHANGASFFFICIYLHIGRGIYYGSYLYKETWNTGVILLLTLMATAFVGYVLP 77
Cdd:MTH00131  58 DISTAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLP 134
CYTB MTH00100
cytochrome b; Provisional
 1-77 1.21e-49

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 159.80  E-value: 1.21e-49
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 67090324    1 DTSLAFSSVAHTCRNVQYGWLIRNLHANGASFFFICIYLHIGRGIYYGSYLYKETWNTGVILLLTLMATAFVGYVLP 77
Cdd:MTH00100  58 DTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLP 134
CYTB MTH00156
cytochrome b; Provisional
 1-77 8.94e-48

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 154.17  E-value: 8.94e-48
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 67090324    1 DTSLAFSSVAHTCRNVQYGWLIRNLHANGASFFFICIYLHIGRGIYYGSYLYKETWNTGVILLLTLMATAFVGYVLP 77
Cdd:MTH00156  48 DIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLP 124
CYTB MTH00191
cytochrome b; Provisional
 1-77 1.47e-46

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 151.22  E-value: 1.47e-46
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 67090324    1 DTSLAFSSVAHTCRNVQYGWLIRNLHANGASFFFICIYLHIGRGIYYGSYLYKETWNTGVILLLTLMATAFVGYVLP 77
Cdd:MTH00191  55 DISLAFSSVVHICRDVNYGWLLRNIHANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLP 131
CYTB MTH00034
cytochrome b; Validated
 1-77 8.21e-43

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 142.15  E-value: 8.21e-43
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 67090324    1 DTSLAFSSVAHTCRNVQYGWLIRNLHANGASFFFICIYLHIGRGIYYGSYLYKETWNTGVILLLTLMATAFVGYVLP 77
Cdd:MTH00034  58 DISLAFSSVSHICRDVNYGWLLRNIHANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLP 134
CYTB MTH00145
cytochrome b; Provisional
 1-77 1.37e-42

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 141.20  E-value: 1.37e-42
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 67090324    1 DTSLAFSSVAHTCRNVQYGWLIRNLHANGASFFFICIYLHIGRGIYYGSYLYKETWNTGVILLLTLMATAFVGYVLP 77
Cdd:MTH00145  59 HVDLAFSSVIHIMRDVNYGWLLRSLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLP 135
CYTB MTH00016
cytochrome b; Validated
 1-77 1.72e-41

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 138.66  E-value: 1.72e-41
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 67090324    1 DTSLAFSSVAHTCRNVQYGWLIRNLHANGASFFFICIYLHIGRGIYYGSYLYKETWNTGVILLLTLMATAFVGYVLP 77
Cdd:MTH00016  59 HIDLAFSSVAHISRDVNYGWLLRNLHANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLP 135
CYTB MTH00224
cytochrome b; Provisional
 4-77 2.30e-33

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 117.33  E-value: 2.30e-33
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 67090324    4 LAFSSVAHTCRNVQYGWLIRNLHANGASFFFICIYLHIGRGIYYGSYLYKETWNTGVILLLTLMATAFVGYVLP 77
Cdd:MTH00224  62 MAFSSVAHISRDVNYGWLLRSIHANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLP 135
CYTB MTH00022
cytochrome b; Validated
 1-77 1.33e-32

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 115.18  E-value: 1.33e-32
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 67090324    1 DTSLAFSSVAHTCRNVQYGWLIRNLHANGASFFFICIYLHIGRGIYYGSYLYKETWNTGVILLLTLMATAFVGYVLP 77
Cdd:MTH00022  57 DVSLAFASVGHIMRDVNYGFLLRYLHANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLP 133
CYTB MTH00053
cytochrome b; Provisional
 1-77 3.26e-31

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 111.72  E-value: 3.26e-31
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 67090324    1 DTSLAFSSVAHTCRNVQYGWLIRNLHANGASFFFICIYLHIGRGIYYGSYLYKETWNTGVILLLTLMATAFVGYVLP 77
Cdd:MTH00053  59 DVNLAFSSVAHITRDVNYGFILRYLHANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLP 135
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-77 3.88e-31

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 107.45  E-value: 3.88e-31
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 67090324   1 DTSLAFSSVAHTCRNVQYGWLIRNLHANGASFFFICIYLHIGRGIYYGSY--LYKETWNTGVILLLTLMATAFVGYVLP 77
Cdd:cd00284  50 DVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLP 128
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-77 4.77e-27

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 96.68  E-value: 4.77e-27
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 67090324     1 DTSLAFSSVAHTCRNVQYGWLIRNLHANGASFFFICIYLHIGRGIYYG--SYLYKETWNTGVILLLTLMATAFVGYVLP 77
Cdd:pfam00033  41 DVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLP 119
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-77 2.20e-26

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 98.71  E-value: 2.20e-26
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67090324   1 DTSLAFSSVAHTCRNVQYGWLIRNLHANGASFFFICIYLHIGRGIYYGSylYKE----TWNTGVILLLTLMATAFVGYVL 76
Cdd:COG1290  67 SASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGA--YKKprelNWIIGVLLLLLTMAEAFTGYSL 144


                .
gi 67090324  77 P 77
Cdd:COG1290 145 P 145
CYTB MTH00033
cytochrome b; Provisional
 1-77 1.19e-25

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 96.93  E-value: 1.19e-25
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 67090324    1 DTSLAFSSVAHTCRNVQYGWLIRNLHANGASFFFICIYLHIGRGIYYGSYLYKETWNTGVILLLTLMATAFVGYVLP 77
Cdd:MTH00033  55 DVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLP 131
CYTB MTH00086
cytochrome b; Provisional
 1-77 4.12e-20

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 81.52  E-value: 4.12e-20
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 67090324    1 DTSLAFSSVAHTCRNVQYGWLIRNLHANGASFFFICIYLHIGRGIYYGSYLYKETWNTGVILLLTLMATAFVGYVLP 77
Cdd:MTH00086  47 DSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLV 123
CYTB MTH00046
cytochrome b; Validated
 1-77 2.49e-15

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 68.09  E-value: 2.49e-15
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 67090324    1 DTSLAFSSVAHTCRNVQYGWLIRNLHANGASFFFICIYLHIGRGIYYGSYLYKETWNTGVILLLTLMATAFVGYVLP 77
Cdd:MTH00046  49 DSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLFILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILP 125
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
31-77 1.26e-10

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 53.78  E-value: 1.26e-10
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 67090324    31 SFFFICIYLHIGRGIYYGSYLYKE--TWNTGVILLLTLMATAFVGYVLP 77
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLP 49
PRK03735 PRK03735
cytochrome b6; Provisional
 5-77 9.66e-10

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 52.02  E-value: 9.66e-10
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 67090324    5 AFSSVAHTCRNVQYGWLIRNLHANGASFFFICIYLHIGRGIYYGSYLYKE--TWNTGVILLLTLMATAFVGYVLP 77
Cdd:PRK03735  73 AYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRelNWVVGVLIFFVTVGLGFTGYLLP 147
petB CHL00070
cytochrome b6
 5-77 3.47e-08

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 47.79  E-value: 3.47e-08
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 67090324    5 AFSSVAHTCRNVQYGWLIRNLHANGASFFFICIYLHIGRGIYYGSYLYKE--TWNTGVILLLTLMATAFVGYVLP 77
Cdd:CHL00070  65 AFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRelTWVTGVVLAVLTVSFGVTGYSLP 139
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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