cytochrome b, partial (mitochondrion) [Pachyornis australis]
cytochrome b family protein( domain architecture ID 581032)
cytochrome b family protein such as formate dehydrogenase subunit gamma or cytochrome b, a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
List of domain hits
Name | Accession | Description | Interval | E-value | ||
Cytochrome_b_N super family | cl23723 | Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
1-77 | 1.40e-56 | ||
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD. The actual alignment was detected with superfamily member MTH00119: Pssm-ID: 474033 [Multi-domain] Cd Length: 380 Bit Score: 177.40 E-value: 1.40e-56
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Name | Accession | Description | Interval | E-value | |||
CYTB | MTH00119 | cytochrome b; Provisional |
1-77 | 1.40e-56 | |||
cytochrome b; Provisional Pssm-ID: 214425 [Multi-domain] Cd Length: 380 Bit Score: 177.40 E-value: 1.40e-56
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Cytochrome_b_N | cd00284 | Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
1-77 | 4.26e-30 | |||
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD. Pssm-ID: 238176 Cd Length: 200 Bit Score: 104.76 E-value: 4.26e-30
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Cytochrome_B | pfam00033 | Cytochrome b/b6/petB; |
1-77 | 4.06e-26 | |||
Cytochrome b/b6/petB; Pssm-ID: 306530 Cd Length: 189 Bit Score: 94.37 E-value: 4.06e-26
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QcrB/PetB | COG1290 | Cytochrome b subunit of the bc complex [Energy production and conversion]; |
1-77 | 4.37e-26 | |||
Cytochrome b subunit of the bc complex [Energy production and conversion]; Pssm-ID: 440901 [Multi-domain] Cd Length: 393 Bit Score: 97.94 E-value: 4.37e-26
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Name | Accession | Description | Interval | E-value | |||
CYTB | MTH00119 | cytochrome b; Provisional |
1-77 | 1.40e-56 | |||
cytochrome b; Provisional Pssm-ID: 214425 [Multi-domain] Cd Length: 380 Bit Score: 177.40 E-value: 1.40e-56
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CYTB | MTH00074 | cytochrome b; Provisional |
1-77 | 1.11e-50 | |||
cytochrome b; Provisional Pssm-ID: 177145 [Multi-domain] Cd Length: 380 Bit Score: 162.54 E-value: 1.11e-50
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CYTB | MTH00131 | cytochrome b; Provisional |
1-77 | 1.36e-50 | |||
cytochrome b; Provisional Pssm-ID: 177189 [Multi-domain] Cd Length: 380 Bit Score: 162.13 E-value: 1.36e-50
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CYTB | MTH00100 | cytochrome b; Provisional |
1-77 | 1.73e-48 | |||
cytochrome b; Provisional Pssm-ID: 177162 [Multi-domain] Cd Length: 379 Bit Score: 156.72 E-value: 1.73e-48
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CYTB | MTH00156 | cytochrome b; Provisional |
1-77 | 5.82e-48 | |||
cytochrome b; Provisional Pssm-ID: 214440 [Multi-domain] Cd Length: 356 Bit Score: 154.55 E-value: 5.82e-48
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CYTB | MTH00191 | cytochrome b; Provisional |
1-77 | 5.49e-46 | |||
cytochrome b; Provisional Pssm-ID: 177239 [Multi-domain] Cd Length: 365 Bit Score: 149.68 E-value: 5.49e-46
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CYTB | MTH00034 | cytochrome b; Validated |
1-77 | 1.09e-41 | |||
cytochrome b; Validated Pssm-ID: 177109 [Multi-domain] Cd Length: 379 Bit Score: 139.07 E-value: 1.09e-41
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CYTB | MTH00145 | cytochrome b; Provisional |
1-77 | 1.21e-41 | |||
cytochrome b; Provisional Pssm-ID: 177203 [Multi-domain] Cd Length: 379 Bit Score: 138.88 E-value: 1.21e-41
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CYTB | MTH00016 | cytochrome b; Validated |
1-77 | 5.86e-41 | |||
cytochrome b; Validated Pssm-ID: 177102 [Multi-domain] Cd Length: 378 Bit Score: 137.12 E-value: 5.86e-41
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CYTB | MTH00224 | cytochrome b; Provisional |
4-77 | 2.38e-32 | |||
cytochrome b; Provisional Pssm-ID: 164767 [Multi-domain] Cd Length: 379 Bit Score: 114.63 E-value: 2.38e-32
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CYTB | MTH00022 | cytochrome b; Validated |
1-77 | 7.91e-32 | |||
cytochrome b; Validated Pssm-ID: 164595 [Multi-domain] Cd Length: 379 Bit Score: 113.26 E-value: 7.91e-32
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CYTB | MTH00053 | cytochrome b; Provisional |
1-77 | 2.60e-30 | |||
cytochrome b; Provisional Pssm-ID: 164624 [Multi-domain] Cd Length: 381 Bit Score: 109.03 E-value: 2.60e-30
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Cytochrome_b_N | cd00284 | Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
1-77 | 4.26e-30 | |||
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD. Pssm-ID: 238176 Cd Length: 200 Bit Score: 104.76 E-value: 4.26e-30
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Cytochrome_B | pfam00033 | Cytochrome b/b6/petB; |
1-77 | 4.06e-26 | |||
Cytochrome b/b6/petB; Pssm-ID: 306530 Cd Length: 189 Bit Score: 94.37 E-value: 4.06e-26
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QcrB/PetB | COG1290 | Cytochrome b subunit of the bc complex [Energy production and conversion]; |
1-77 | 4.37e-26 | |||
Cytochrome b subunit of the bc complex [Energy production and conversion]; Pssm-ID: 440901 [Multi-domain] Cd Length: 393 Bit Score: 97.94 E-value: 4.37e-26
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CYTB | MTH00033 | cytochrome b; Provisional |
1-77 | 1.78e-25 | |||
cytochrome b; Provisional Pssm-ID: 133672 [Multi-domain] Cd Length: 383 Bit Score: 96.16 E-value: 1.78e-25
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CYTB | MTH00086 | cytochrome b; Provisional |
1-77 | 2.10e-20 | |||
cytochrome b; Provisional Pssm-ID: 177151 [Multi-domain] Cd Length: 355 Bit Score: 82.29 E-value: 2.10e-20
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CYTB | MTH00046 | cytochrome b; Validated |
1-77 | 3.51e-14 | |||
cytochrome b; Validated Pssm-ID: 177121 [Multi-domain] Cd Length: 355 Bit Score: 65.00 E-value: 3.51e-14
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Cytochrom_B_N_2 | pfam13631 | Cytochrome b(N-terminal)/b6/petB; |
31-77 | 1.32e-09 | |||
Cytochrome b(N-terminal)/b6/petB; Pssm-ID: 433364 Cd Length: 169 Bit Score: 51.09 E-value: 1.32e-09
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PRK03735 | PRK03735 | cytochrome b6; Provisional |
5-77 | 1.71e-09 | |||
cytochrome b6; Provisional Pssm-ID: 179639 Cd Length: 223 Bit Score: 51.25 E-value: 1.71e-09
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petB | CHL00070 | cytochrome b6 |
5-77 | 1.14e-07 | |||
cytochrome b6 Pssm-ID: 177009 Cd Length: 215 Bit Score: 46.25 E-value: 1.14e-07
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Blast search parameters | ||||
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