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Conserved domains on  [gi|6707651|gb|AAF25683|]
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over-expressed breast tumor protein [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TOM6p super family cl21049
Mitochondrial import receptor subunit TOM6 homolog; TOMM6 forms part of the pre-protein ...
 4-72 1.13e-22

Mitochondrial import receptor subunit TOM6 homolog; TOMM6 forms part of the pre-protein translocase complex of the outer mitochondrial membrane (TOM complex). This family of proteins is found in eukaryotes. Proteins in this family are typically between 43 and 74 amino acids in length.


The actual alignment was detected with superfamily member pfam15184:

Pssm-ID: 434523  Cd Length: 74  Bit Score: 82.35  E-value: 1.13e-22
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 6707651     4 STVPVSAAGSANKTPEIPDNVGDWLRGVYRFATDRNDFRRNLILNLGLFAAGVWLARNLSDIDLMAPQP 72
Cdd:pfam15184  4 STVPVSAAGSANETPEIPDNVGDWLRGVYRFATDRNDFRRNLILNLGLFAAGVWLARNLSDIDLMAPQP 72
 
Name Accession Description Interval E-value
TOM6p pfam15184
Mitochondrial import receptor subunit TOM6 homolog; TOMM6 forms part of the pre-protein ...
 4-72 1.13e-22

Mitochondrial import receptor subunit TOM6 homolog; TOMM6 forms part of the pre-protein translocase complex of the outer mitochondrial membrane (TOM complex). This family of proteins is found in eukaryotes. Proteins in this family are typically between 43 and 74 amino acids in length.


Pssm-ID: 434523  Cd Length: 74  Bit Score: 82.35  E-value: 1.13e-22
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 6707651     4 STVPVSAAGSANKTPEIPDNVGDWLRGVYRFATDRNDFRRNLILNLGLFAAGVWLARNLSDIDLMAPQP 72
Cdd:pfam15184  4 STVPVSAAGSANETPEIPDNVGDWLRGVYRFATDRNDFRRNLILNLGLFAAGVWLARNLSDIDLMAPQP 72
 
Name Accession Description Interval E-value
TOM6p pfam15184
Mitochondrial import receptor subunit TOM6 homolog; TOMM6 forms part of the pre-protein ...
 4-72 1.13e-22

Mitochondrial import receptor subunit TOM6 homolog; TOMM6 forms part of the pre-protein translocase complex of the outer mitochondrial membrane (TOM complex). This family of proteins is found in eukaryotes. Proteins in this family are typically between 43 and 74 amino acids in length.


Pssm-ID: 434523  Cd Length: 74  Bit Score: 82.35  E-value: 1.13e-22
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 6707651     4 STVPVSAAGSANKTPEIPDNVGDWLRGVYRFATDRNDFRRNLILNLGLFAAGVWLARNLSDIDLMAPQP 72
Cdd:pfam15184  4 STVPVSAAGSANETPEIPDNVGDWLRGVYRFATDRNDFRRNLILNLGLFAAGVWLARNLSDIDLMAPQP 72
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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