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Conserved domains on  [gi|669217886|gb|AII18614|]
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NADH-plastoquinone oxidoreductase subunit 4L, partial (chloroplast) [Viburnum plicatum]

Protein Classification

NAD(P)H-quinone oxidoreductase subunit 4L( domain architecture ID 10000006)

NAD(P)H-quinone oxidoreductase subunit 4L (ND4L) is part of the chloroplast NDH complex that shuttles electrons from NAD(P)H:plastoquinone, via FMN and iron-sulfur (Fe-S) centers, to quinones in the photosynthetic and in the chloroplast respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ndhE CHL00015
NADH dehydrogenase subunit 4L
 1-100 2.29e-49

NADH dehydrogenase subunit 4L


:

Pssm-ID: 176958  Cd Length: 101  Bit Score: 151.69  E-value: 2.29e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 669217886   1 MMLEHVLVLSAYLFSVGLYGLITSRNMVRALMCLELILNAVNINFVTFSDFFDSRQLKGAIFSIFVIAIAAAEAAIGLAI 80
Cdd:CHL00015   1 MMLEHVLILSAYLFSIGIYGLITSRNMVRALMCLELILNAVNINFVTFSDFFDSRQLKGDIFSIFVIAIAAAEAAIGLAI 80

                         90       100
                 ....*....|....*....|
gi 669217886  81 VSSIYRNRKSTRINQSNLLN 100
Cdd:CHL00015  81 VSSIYRNRKSTRINQSNLLK 100
 
Name Accession Description Interval E-value
ndhE CHL00015
NADH dehydrogenase subunit 4L
 1-100 2.29e-49

NADH dehydrogenase subunit 4L


Pssm-ID: 176958  Cd Length: 101  Bit Score: 151.69  E-value: 2.29e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 669217886   1 MMLEHVLVLSAYLFSVGLYGLITSRNMVRALMCLELILNAVNINFVTFSDFFDSRQLKGAIFSIFVIAIAAAEAAIGLAI 80
Cdd:CHL00015   1 MMLEHVLILSAYLFSIGIYGLITSRNMVRALMCLELILNAVNINFVTFSDFFDSRQLKGDIFSIFVIAIAAAEAAIGLAI 80

                         90       100
                 ....*....|....*....|
gi 669217886  81 VSSIYRNRKSTRINQSNLLN 100
Cdd:CHL00015  81 VSSIYRNRKSTRINQSNLLK 100
NuoK COG0713
NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) [Energy production and conversion]; ...
 1-99 6.06e-21

NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440477  Cd Length: 99  Bit Score: 79.34  E-value: 6.06e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 669217886   1 MMLEHVLVLSAYLFSVGLYGLITSRNMVRALMCLELILNAVNINFVTFSDFFDsrQLKGAIFSIFVIAIAAAEAAIGLAI 80
Cdd:COG0713    1 IPLEHYLILAAILFAIGLYGVLTRRNLIVVLMSIELMLNAVNLNLVAFSRYLG--DLDGQVFALFVIAVAAAEVAVGLAI 78

                         90
                 ....*....|....*....
gi 669217886  81 VSSIYRNRKSTRINQSNLL 99
Cdd:COG0713   79 IVALYRNRGTIDVDDLNEL 97
F420_dehyd_FpoK NF040614
F420H2 dehydrogenase subunit FpoK;
3-99 4.67e-15

F420H2 dehydrogenase subunit FpoK;


Pssm-ID: 468586  Cd Length: 98  Bit Score: 64.33  E-value: 4.67e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 669217886   3 LEHVLVLSAYLFSVGLYGLITSRNMVRALMCLELILNAVNINFVTFSDFFDSrqLKGAIFSIFVIAIAAAEAAIGLAIVS 82
Cdd:NF040614   2 LELYLGLAAIIFSIGLYGFMTQKNGIRLLMCVELMLNSANINLVAFSSYNDD--LTGQVFALFSIALAAAEAAIGFAILM 79

                         90
                 ....*....|....*..
gi 669217886  83 SIYRNRKSTRINQSNLL 99
Cdd:NF040614  80 AIYRMRDTINLDNINIL 96
Oxidored_q2 pfam00420
NADH-ubiquinone/plastoquinone oxidoreductase chain 4L;
5-99 1.05e-13

NADH-ubiquinone/plastoquinone oxidoreductase chain 4L;


Pssm-ID: 425672  Cd Length: 95  Bit Score: 61.04  E-value: 1.05e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 669217886    5 HVLVLSAYLFSVGLYGLITSRNMVRALMCLELILNAVNINFVTFSDFFDSrqLKGAIFSIFVIAIAAAEAAIGLAIVSSI 84
Cdd:pfam00420   1 AYLLLSGLLFLIGLYGLLLRRNLLRVLLSLELMLNAVNLALVLFGRLTAD--PLPQALILTAIVIAAAEAAVGLALLVRI 78

                          90
                  ....*....|....*
gi 669217886   85 YRNRKSTRINQSNLL 99
Cdd:pfam00420  79 YRTHGTDDVDSLNLL 93
 
Name Accession Description Interval E-value
ndhE CHL00015
NADH dehydrogenase subunit 4L
 1-100 2.29e-49

NADH dehydrogenase subunit 4L


Pssm-ID: 176958  Cd Length: 101  Bit Score: 151.69  E-value: 2.29e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 669217886   1 MMLEHVLVLSAYLFSVGLYGLITSRNMVRALMCLELILNAVNINFVTFSDFFDSRQLKGAIFSIFVIAIAAAEAAIGLAI 80
Cdd:CHL00015   1 MMLEHVLILSAYLFSIGIYGLITSRNMVRALMCLELILNAVNINFVTFSDFFDSRQLKGDIFSIFVIAIAAAEAAIGLAI 80

                         90       100
                 ....*....|....*....|
gi 669217886  81 VSSIYRNRKSTRINQSNLLN 100
Cdd:CHL00015  81 VSSIYRNRKSTRINQSNLLK 100
PRK05715 PRK05715
NADH-quinone oxidoreductase subunit NuoK;
1-99 2.46e-21

NADH-quinone oxidoreductase subunit NuoK;


Pssm-ID: 180218  Cd Length: 100  Bit Score: 80.61  E-value: 2.46e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 669217886   1 MMLEHVLVLSAYLFSVGLYGLITSRNMVRALMCLELILNAVNINFVTFSDFFDsrQLKGAIFSIFVIAIAAAEAAIGLAI 80
Cdd:PRK05715   2 IPLQHYLILAAILFCIGLVGLLLRRNAIVVLMSIELMLNAVNLNFVAFSSYLG--DLDGQVFAFFVITVAAAEAAIGLAI 79

                         90
                 ....*....|....*....
gi 669217886  81 VSSIYRNRKSTRINQSNLL 99
Cdd:PRK05715  80 LLQLYRNRGTIDVDDLNEL 98
NuoK COG0713
NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) [Energy production and conversion]; ...
 1-99 6.06e-21

NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440477  Cd Length: 99  Bit Score: 79.34  E-value: 6.06e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 669217886   1 MMLEHVLVLSAYLFSVGLYGLITSRNMVRALMCLELILNAVNINFVTFSDFFDsrQLKGAIFSIFVIAIAAAEAAIGLAI 80
Cdd:COG0713    1 IPLEHYLILAAILFAIGLYGVLTRRNLIVVLMSIELMLNAVNLNLVAFSRYLG--DLDGQVFALFVIAVAAAEVAVGLAI 78

                         90
                 ....*....|....*....
gi 669217886  81 VSSIYRNRKSTRINQSNLL 99
Cdd:COG0713   79 IVALYRNRGTIDVDDLNEL 97
F420_dehyd_FpoK NF040614
F420H2 dehydrogenase subunit FpoK;
3-99 4.67e-15

F420H2 dehydrogenase subunit FpoK;


Pssm-ID: 468586  Cd Length: 98  Bit Score: 64.33  E-value: 4.67e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 669217886   3 LEHVLVLSAYLFSVGLYGLITSRNMVRALMCLELILNAVNINFVTFSDFFDSrqLKGAIFSIFVIAIAAAEAAIGLAIVS 82
Cdd:NF040614   2 LELYLGLAAIIFSIGLYGFMTQKNGIRLLMCVELMLNSANINLVAFSSYNDD--LTGQVFALFSIALAAAEAAIGFAILM 79

                         90
                 ....*....|....*..
gi 669217886  83 SIYRNRKSTRINQSNLL 99
Cdd:NF040614  80 AIYRMRDTINLDNINIL 96
Oxidored_q2 pfam00420
NADH-ubiquinone/plastoquinone oxidoreductase chain 4L;
5-99 1.05e-13

NADH-ubiquinone/plastoquinone oxidoreductase chain 4L;


Pssm-ID: 425672  Cd Length: 95  Bit Score: 61.04  E-value: 1.05e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 669217886    5 HVLVLSAYLFSVGLYGLITSRNMVRALMCLELILNAVNINFVTFSDFFDSrqLKGAIFSIFVIAIAAAEAAIGLAIVSSI 84
Cdd:pfam00420   1 AYLLLSGLLFLIGLYGLLLRRNLLRVLLSLELMLNAVNLALVLFGRLTAD--PLPQALILTAIVIAAAEAAVGLALLVRI 78

                          90
                  ....*....|....*
gi 669217886   85 YRNRKSTRINQSNLL 99
Cdd:pfam00420  79 YRTHGTDDVDSLNLL 93
PRK07375 PRK07375
Na+/H+ antiporter subunit C;
7-47 1.49e-03

Na+/H+ antiporter subunit C;


Pssm-ID: 236004  Cd Length: 112  Bit Score: 34.86  E-value: 1.49e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|.
gi 669217886   7 LVLSAYLFSVGLYGLITSRNMVRALMCLELILNAVNINFVT 47
Cdd:PRK07375   6 YALAIALLVIGLYGLIFKRNLLKKIIGLDVFQTGVNLFYIA 46
PRK07946 PRK07946
putative monovalent cation/H+ antiporter subunit C; Reviewed
 7-43 2.27e-03

putative monovalent cation/H+ antiporter subunit C; Reviewed


Pssm-ID: 236136  Cd Length: 163  Bit Score: 35.02  E-value: 2.27e-03
                         10        20        30
                 ....*....|....*....|....*....|....*..
gi 669217886   7 LVLSAYLFSVGLYgLITSRNMVRALMCLELILNAVNI 43
Cdd:PRK07946   8 LVAIGVLTSAGVY-LLLERSLTRMLLGLLLIGNGVNL 43
ND4L MTH00180
NADH dehydrogenase subunit 4L; Provisional
 1-99 4.81e-03

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177231  Cd Length: 99  Bit Score: 33.47  E-value: 4.81e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 669217886   1 MMLEHVLVlSAYLFSVGLYGLITSR-NMVRALMCLELILNAVNINFVTFSDFFDSrqLKGAIFSIFVIAIAAAEAAIGLA 79
Cdd:MTH00180   1 MYYEYLTV-GIILFILGVLGIVLNRsNLIIMLMSIELMLLAISLLFLINSVAIDN--LIGQIFTIMILTVAAAESAIGLA 77

                         90       100
                 ....*....|....*....|
gi 669217886  80 IVSSIYRNRKSTRINQSNLL 99
Cdd:MTH00180  78 ILVAYYRIRGTIAVKSLNLL 97
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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