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Conserved domains on  [gi|66821947|gb|AAY57296|]
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cytochrome b, partial (mitochondrion) [Limnoctites sulphuriferus]

Protein Classification

cytochrome b( domain architecture ID 11475906)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), a respiratory chain that generates an electrochemical potential coupled to ATP synthesis

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-332 0e+00

cytochrome b; Provisional


:

Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 675.46  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66821947    1 GLLMAMHYTADTTLAFTSVAHTCRNVQFGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLFKETWNTGIILLLTLMATA 80
Cdd:MTH00119  49 GLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATA 128

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66821947   81 FVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMIAGLTFIHLTFLHETGSNN 160
Cdd:MTH00119 129 FVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNN 208

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66821947  161 PLGISSNCDKIPFHPYFSIKDILGFLAMLIPLTALAMFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNK 240
Cdd:MTH00119 209 PLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNK 288

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66821947  241 LGGVLALAASVLVLFLIPFLHKSKQRTMTFRPLSQLMFWILVTNLLILTWVGSQPVEHPFIIIGQLASLTYFTTILILFP 320
Cdd:MTH00119 289 LGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTILLILFP 368

                        330
                 ....*....|..
gi 66821947  321 IIGALENKMLNL 332
Cdd:MTH00119 369 LLGALENKMLNY 380
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-332 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 675.46  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66821947    1 GLLMAMHYTADTTLAFTSVAHTCRNVQFGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLFKETWNTGIILLLTLMATA 80
Cdd:MTH00119  49 GLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATA 128

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66821947   81 FVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMIAGLTFIHLTFLHETGSNN 160
Cdd:MTH00119 129 FVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNN 208

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66821947  161 PLGISSNCDKIPFHPYFSIKDILGFLAMLIPLTALAMFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNK 240
Cdd:MTH00119 209 PLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNK 288

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66821947  241 LGGVLALAASVLVLFLIPFLHKSKQRTMTFRPLSQLMFWILVTNLLILTWVGSQPVEHPFIIIGQLASLTYFTTILILFP 320
Cdd:MTH00119 289 LGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTILLILFP 368

                        330
                 ....*....|..
gi 66821947  321 IIGALENKMLNL 332
Cdd:MTH00119 369 LLGALENKMLNY 380
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-326 1.02e-120

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 352.56  E-value: 1.02e-120
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66821947   1 GLLMAMHYTADTTLAFTSVAHTCRNVQFGWLIRNLHANGASMFFICIYLHIGRGLYYGSYlfKE----TWNTGIILLLTL 76
Cdd:COG1290  57 GIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAY--KKprelNWIIGVLLLLLT 134

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66821947  77 MATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALH-FLLPFMIAGLTFIHLTFLHE 155
Cdd:COG1290 135 MAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHR 214

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66821947 156 TGSNNPLGI----SSNCDKIPFHPYFSIKDILGFLAMLIPLTALAMFSPNllGDPENFTPANPLVTPPHIKPEWYFLFAY 231
Cdd:COG1290 215 HGHNNPPGPerkkTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPANPLATPAHIQPDWYFLPFY 292

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66821947 232 AILRSIP--NKLGGVLALAASVLVLFLIPFLHKSKQRTMTFRPLSQLMFWILVTNLLILTWVGSQPVehPFIIIGQLASL 309
Cdd:COG1290 293 GILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTILGANPP--IATLLGSINTV 370

                       330
                ....*....|....*..
gi 66821947 310 TYFTTILILFPIIGALE 326
Cdd:COG1290 371 TYFAFFLIVLPILAFIE 387
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-159 5.68e-77

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 234.18  E-value: 5.68e-77
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66821947   1 GLLMAMHYTADTTLAFTSVAHTCRNVQFGWLIRNLHANGASMFFICIYLHIGRGLYYGSY--LFKETWNTGIILLLTLMA 78
Cdd:cd00284  40 GVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMA 119

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66821947  79 TAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMIAGLTFIHLTFLHETGS 158
Cdd:cd00284 120 TAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGS 199


                .
gi 66821947 159 N 159
Cdd:cd00284 200 S 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-157 1.79e-67

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 209.55  E-value: 1.79e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66821947     1 GLLMAMHYTADTTLAFTSVAHTCRNVQFGWLIRNLHANGASMFFICIYLHIGRGLYYG--SYLFKETWNTGIILLLTLMA 78
Cdd:pfam00033  31 GVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPRELTWVIGVILLVLTMS 110

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 66821947    79 TAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMIAGLTFIHLTFLHETG 157
Cdd:pfam00033 111 TAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 182-292 2.31e-12

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 64.05  E-value: 2.31e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66821947   182 ILGFLAMLIpltALAMFSPNLLGDPenftpANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLVLFLIPFLH 261
Cdd:TIGR01156  44 ILGTIACVV---GLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIE 115

                          90       100       110
                  ....*....|....*....|....*....|..
gi 66821947   262 KSKQRTMTF-RPLSQLMFWIlvtNLLILTWVG 292
Cdd:TIGR01156 116 NVNKFQNPFrRPVATTVFLF---GTVVALWLG 144
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-332 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 675.46  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66821947    1 GLLMAMHYTADTTLAFTSVAHTCRNVQFGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLFKETWNTGIILLLTLMATA 80
Cdd:MTH00119  49 GLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATA 128

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66821947   81 FVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMIAGLTFIHLTFLHETGSNN 160
Cdd:MTH00119 129 FVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNN 208

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66821947  161 PLGISSNCDKIPFHPYFSIKDILGFLAMLIPLTALAMFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNK 240
Cdd:MTH00119 209 PLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNK 288

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66821947  241 LGGVLALAASVLVLFLIPFLHKSKQRTMTFRPLSQLMFWILVTNLLILTWVGSQPVEHPFIIIGQLASLTYFTTILILFP 320
Cdd:MTH00119 289 LGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTILLILFP 368

                        330
                 ....*....|..
gi 66821947  321 IIGALENKMLNL 332
Cdd:MTH00119 369 LLGALENKMLNY 380
CYTB MTH00131
cytochrome b; Provisional
 1-331 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 613.20  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66821947    1 GLLMAMHYTADTTLAFTSVAHTCRNVQFGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLFKETWNTGIILLLTLMATA 80
Cdd:MTH00131  48 GLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTA 127

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66821947   81 FVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMIAGLTFIHLTFLHETGSNN 160
Cdd:MTH00131 128 FVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNN 207

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66821947  161 PLGISSNCDKIPFHPYFSIKDILGFLAMLIPLTALAMFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNK 240
Cdd:MTH00131 208 PLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNK 287

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66821947  241 LGGVLALAASVLVLFLIPFLHKSKQRTMTFRPLSQLMFWILVTNLLILTWVGSQPVEHPFIIIGQLASLTYFTTILILFP 320
Cdd:MTH00131 288 LGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQFLFWTLVADVLILTWIGGMPVEHPFIIIGQVASVLYFSLFLVLMP 367

                        330
                 ....*....|.
gi 66821947  321 IIGALENKMLN 331
Cdd:MTH00131 368 LAGWLENKALE 378
CYTB MTH00100
cytochrome b; Provisional
 1-330 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 610.87  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66821947    1 GLLMAMHYTADTTLAFTSVAHTCRNVQFGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLFKETWNTGIILLLTLMATA 80
Cdd:MTH00100  48 GLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATA 127

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66821947   81 FVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMIAGLTFIHLTFLHETGSNN 160
Cdd:MTH00100 128 FMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNN 207

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66821947  161 PLGISSNCDKIPFHPYFSIKDILGFLAMLIPLTALAMFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNK 240
Cdd:MTH00100 208 PSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNK 287

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66821947  241 LGGVLALAASVLVLFLIPFLHKSKQRTMTFRPLSQLMFWILVTNLLILTWVGSQPVEHPFIIIGQLASLTYFTTILILFP 320
Cdd:MTH00100 288 LGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQCLFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFLIILILMP 367

                        330
                 ....*....|
gi 66821947  321 IIGALENKML 330
Cdd:MTH00100 368 IASLIENNLL 377
CYTB MTH00074
cytochrome b; Provisional
 1-332 0e+00

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 592.81  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66821947    1 GLLMAMHYTADTTLAFTSVAHTCRNVQFGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLFKETWNTGIILLLTLMATA 80
Cdd:MTH00074  49 GLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATA 128

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66821947   81 FVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMIAGLTFIHLTFLHETGSNN 160
Cdd:MTH00074 129 FVGYVLPWGQMSFWGATVITNLLSAIPYMGDTLVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNN 208

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66821947  161 PLGISSNCDKIPFHPYFSIKDILGFLAMLIPLTALAMFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNK 240
Cdd:MTH00074 209 PTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALALLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNK 288

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66821947  241 LGGVLALAASVLVLFLIPFLHKSKQRTMTFRPLSQLMFWILVTNLLILTWVGSQPVEHPFIIIGQLASLTYFTTILILFP 320
Cdd:MTH00074 289 LGGVLALLASILILMLIPMLHTSKQRSLMFRPLTQILFWLLVANTLILTWIGGQPVEDPFIEIGQAASILYFLLFIIIIP 368

                        330
                 ....*....|..
gi 66821947  321 IIGALENKMLNL 332
Cdd:MTH00074 369 LTGWLENKLLKW 380
CYTB MTH00191
cytochrome b; Provisional
 1-321 0e+00

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 563.38  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66821947    1 GLLMAMHYTADTTLAFTSVAHTCRNVQFGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLFKETWNTGIILLLTLMATA 80
Cdd:MTH00191  45 GLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATA 124

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66821947   81 FVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMIAGLTFIHLTFLHETGSNN 160
Cdd:MTH00191 125 FLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQWLWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNN 204

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66821947  161 PLGISSNCDKIPFHPYFSIKDILGFLAMLIPLTALAMFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNK 240
Cdd:MTH00191 205 PLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLVLFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNK 284

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66821947  241 LGGVLALAASVLVLFLIPFLHKSKQRTMTFRPLSQLMFWILVTNLLILTWVGSQPVEHPFIIIGQLASLTYFTTILILFP 320
Cdd:MTH00191 285 LGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQVVFWLWVANFILLTWLGGQPVEDPFILLGQISSFLYFFLFLLLFP 364


                 .
gi 66821947  321 I 321
Cdd:MTH00191 365 L 365
CYTB MTH00156
cytochrome b; Provisional
 1-319 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 554.01  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66821947    1 GLLMAMHYTADTTLAFTSVAHTCRNVQFGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLFKETWNTGIILLLTLMATA 80
Cdd:MTH00156  38 GLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATA 117

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66821947   81 FVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMIAGLTFIHLTFLHETGSNN 160
Cdd:MTH00156 118 FLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNN 197

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66821947  161 PLGISSNCDKIPFHPYFSIKDILGFLAMLIPLTALAMFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNK 240
Cdd:MTH00156 198 PLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNK 277

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 66821947  241 LGGVLALAASVLVLFLIPFLHKSKQRTMTFRPLSQLMFWILVTNLLILTWVGSQPVEHPFIIIGQLASLTYFTTILILF 319
Cdd:MTH00156 278 LGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVNIVILLTWIGARPVEEPYILTGQILTILYFLYFIINP 356
CYTB MTH00145
cytochrome b; Provisional
 1-330 0e+00

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 537.95  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66821947    1 GLLMAMHYTADTTLAFTSVAHTCRNVQFGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLFKETWNTGIILLLTLMATA 80
Cdd:MTH00145  49 GLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTA 128

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66821947   81 FVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMIAGLTFIHLTFLHETGSNN 160
Cdd:MTH00145 129 FLGYVLPWGQMSFWGATVITNLLSAIPYVGKMLVEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNN 208

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66821947  161 PLGISSNCDKIPFHPYFSIKDILGFLAMLIPLTALAMFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNK 240
Cdd:MTH00145 209 PLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLVFLVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNK 288

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66821947  241 LGGVLALAASVLVLFLIPFLHKSKQRTMTFRPLSQLMFWILVTNLLILTWVGSQPVEHPFIIIGQLASLTYFTTILILfP 320
Cdd:MTH00145 289 LGGVIALVMSIVILFFLPLLHVGKFRSLSFYPLNQVLFWIFVGNFFILTWIGACPVEEPYETIGQVFTVLYFLFFLIL-P 367

                        330
                 ....*....|
gi 66821947  321 IIGALENKML 330
Cdd:MTH00145 368 LVQKLWDNIL 377
CYTB MTH00034
cytochrome b; Validated
 1-331 0e+00

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 536.60  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66821947    1 GLLMAMHYTADTTLAFTSVAHTCRNVQFGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLFKETWNTGIILLLTLMATA 80
Cdd:MTH00034  48 GIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTA 127

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66821947   81 FVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMIAGLTFIHLTFLHETGSNN 160
Cdd:MTH00034 128 FVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQWIWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNN 207

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66821947  161 PLGISSNCDKIPFHPYFSIKDILGFLAMLIPLTALAMFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNK 240
Cdd:MTH00034 208 PTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLALLFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNK 287

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66821947  241 LGGVLALAASVLVLFLIPFLHKSKQRTMTFRPLSQLMFWILVTNLLILTWVGSQPVEHPFIIIGQLASLTYFTTILILFP 320
Cdd:MTH00034 288 LGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQIAFWLLIATFFILTWIGSQPVEYPFILLGQVASVLYFSLFLFFFP 367

                        330
                 ....*....|.
gi 66821947  321 IIGALENKMLN 331
Cdd:MTH00034 368 LISYLENKLIF 378
CYTB MTH00016
cytochrome b; Validated
 1-330 0e+00

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 505.75  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66821947    1 GLLMAMHYTADTTLAFTSVAHTCRNVQFGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLFKETWNTGIILLLTLMATA 80
Cdd:MTH00016  49 GLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATA 128

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66821947   81 FVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMIAGLTFIHLTFLHETGSNN 160
Cdd:MTH00016 129 FLGYVLPWGQMSFWGATVITNLLSAIPYIGKMLVQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNN 208

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66821947  161 PLGISSNCDKIPFHPYFSIKDILGFLAMLIPLTALAMFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNK 240
Cdd:MTH00016 209 PLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLLSVVLLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNK 288

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66821947  241 LGGVLALAASVLVLFLIPFLHKSKQRTMTFRPLSQLMFWILVTNLLILTWVGSQPVEHPFIIIGQLASLTYFtTILILFP 320
Cdd:MTH00016 289 LGGVVAMFASILILFFLPFIFKQKFRGLSFYPLNQILFWLLVSNFLLLTWIGGRPVEPPYEFLGQIFTVFYF-FYFMINP 367

                        330
                 ....*....|
gi 66821947  321 IIGALENKML 330
Cdd:MTH00016 368 LLMKLWDKLL 377
CYTB MTH00053
cytochrome b; Provisional
 1-332 5.65e-167

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 469.57  E-value: 5.65e-167
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66821947    1 GLLMAMHYTADTTLAFTSVAHTCRNVQFGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLFKETWNTGIILLLTLMATA 80
Cdd:MTH00053  49 GIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTA 128

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66821947   81 FVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMIAGLTFIHLTFLHETGSNN 160
Cdd:MTH00053 129 FIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNN 208

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66821947  161 PLGISSNCDKIPFHPYFSIKDILGFLAMLIPLTALAMFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNK 240
Cdd:MTH00053 209 PIGVRSDIDKIPFHYYYVLKDLYGAVILLIILSIIVFLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNK 288

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66821947  241 LGGVLALAASVLVLFLIPFLHKSKQRTMTFRPLSQLMFWILVTNLLILTWVGSQPVEHPFIIIGQLASLTYFTTILILFP 320
Cdd:MTH00053 289 LGGVVALVFSILVLFFLPYLHKSRFRGLSFRPLSKILFWFLVGDFFLLTWIGGQPVEEPYILIGQIASIFYFAYFLILMP 368

                        330
                 ....*....|..
gi 66821947  321 IIGALENKMLNL 332
Cdd:MTH00053 369 LAGYLENKLLKL 380
CYTB MTH00022
cytochrome b; Validated
 1-331 8.09e-165

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 464.17  E-value: 8.09e-165
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66821947    1 GLLMAMHYTADTTLAFTSVAHTCRNVQFGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLFKETWNTGIILLLTLMATA 80
Cdd:MTH00022  47 GCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATA 126

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66821947   81 FVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMIAGLTFIHLTFLHETGSNN 160
Cdd:MTH00022 127 FMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQWVWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNN 206

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66821947  161 PLGISSNCDKIPFHPYFSIKDILGFLAMLIPLTALAMFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNK 240
Cdd:MTH00022 207 PIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIVYFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNK 286

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66821947  241 LGGVLALAASVLVLFLIPFLHKSKQRTMTFRPLSQLMFWILVTNLLILTWVGSQPVEHPFIIIGQLASLTYFTTILILFP 320
Cdd:MTH00022 287 LGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLGRMAFWFLIVDFILLTWIGSQVVEEPFILIGQLLSFFYFFYFLVLIP 366

                        330
                 ....*....|.
gi 66821947  321 IIGALENKMLN 331
Cdd:MTH00022 367 LLGELENQLLF 377
CYTB MTH00224
cytochrome b; Provisional
 1-331 3.39e-155

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 439.74  E-value: 3.39e-155
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66821947    1 GLLMAMHYTADTTLAFTSVAHTCRNVQFGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLFKETWNTGIILLLTLMATA 80
Cdd:MTH00224  49 GLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATA 128

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66821947   81 FVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMIAGLTFIHLTFLHETGSNN 160
Cdd:MTH00224 129 FLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNN 208

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66821947  161 PLGISSNCDKIPFHPYFSIKDILGFLAMLIPLTALAMFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNK 240
Cdd:MTH00224 209 PIGINADSARIPFHPYYSIKDALGYLIAILLLSLMVLFEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNK 288

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66821947  241 LGGVLALAASVLVLFLIPFLHKSKQRTMTFRPLSQLMFWILVTNLLILTWVGSQPVEHPFIIIGQLASLTYFtTILILFP 320
Cdd:MTH00224 289 LGGVVALFAAILILFILPLTSVMNKRSLPFYPLNQLLFWLLVTSWAILTWIGGRPVEDPFEGIGQVFTILYF-SYFIISP 367

                        330
                 ....*....|.
gi 66821947  321 IIGALENKMLN 331
Cdd:MTH00224 368 AISKLWDDLLN 378
CYTB MTH00033
cytochrome b; Provisional
 1-327 5.19e-125

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 363.49  E-value: 5.19e-125
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66821947    1 GLLMAMHYTADTTLAFTSVAHTCRNVQFGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLFKETWNTGIILLLTLMATA 80
Cdd:MTH00033  45 GVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTA 124

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66821947   81 FVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMIAGLTFIHLTFLHETGSNN 160
Cdd:MTH00033 125 FIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTLNRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNE 204

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66821947  161 PLGISSNCDKIPFHPYFSIKDILGFLAMLIPLTALAMFS--PNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIP 238
Cdd:MTH00033 205 PLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVIIGIEPriETLLQDPENFIQANPLVTPVHIQPEWYFLFAYAILRSIP 284

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66821947  239 NKLGGVLALAASVLVLFLIPFLHKSKQRTMTFRPLSQLMFWILVTNLLILTWVGSQPV-EHPFIIIGQLASLTYFTTILI 317
Cdd:MTH00033 285 NKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTGKFFFWFIVGDFIILTWIGSAPAgADPYVLIGRIATIFYFGYFLV 364

                        330
                 ....*....|
gi 66821947  318 LFPIIGALEN 327
Cdd:MTH00033 365 LVPLLGYLSN 374
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-326 1.02e-120

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 352.56  E-value: 1.02e-120
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66821947   1 GLLMAMHYTADTTLAFTSVAHTCRNVQFGWLIRNLHANGASMFFICIYLHIGRGLYYGSYlfKE----TWNTGIILLLTL 76
Cdd:COG1290  57 GIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAY--KKprelNWIIGVLLLLLT 134

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66821947  77 MATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALH-FLLPFMIAGLTFIHLTFLHE 155
Cdd:COG1290 135 MAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHR 214

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66821947 156 TGSNNPLGI----SSNCDKIPFHPYFSIKDILGFLAMLIPLTALAMFSPNllGDPENFTPANPLVTPPHIKPEWYFLFAY 231
Cdd:COG1290 215 HGHNNPPGPerkkTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPANPLATPAHIQPDWYFLPFY 292

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66821947 232 AILRSIP--NKLGGVLALAASVLVLFLIPFLHKSKQRTMTFRPLSQLMFWILVTNLLILTWVGSQPVehPFIIIGQLASL 309
Cdd:COG1290 293 GILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTILGANPP--IATLLGSINTV 370

                       330
                ....*....|....*..
gi 66821947 310 TYFTTILILFPIIGALE 326
Cdd:COG1290 371 TYFAFFLIVLPILAFIE 387
CYTB MTH00086
cytochrome b; Provisional
 1-319 6.35e-107

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 316.11  E-value: 6.35e-107
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66821947    1 GLLMAMHYTADTTLAFTSVAHTCRNVQFGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLFKETWNTGIILLLTLMATA 80
Cdd:MTH00086  37 GTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEA 116

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66821947   81 FVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMIAGLTFIHLTFLHETGSNN 160
Cdd:MTH00086 117 FMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVSSATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTS 196

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66821947  161 PLGISSNCDKIPFHPYFSIKDILGFLAMLIpLTALAMFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNK 240
Cdd:MTH00086 197 SLYCHGDYDKICFGPEYWNKDAYNIIFWLV-FIIFSLFYPFNLGDPEMFIEADPMMSPVHIVPEWYFLFAYAILRAIPNK 275

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 66821947  241 LGGVLALAASVLVLFLIPFLHKSkqrTMTFRPLSQLMFWILVTNLLILTWVGSQPVEHPFIIIGQLASLTYFTTILILF 319
Cdd:MTH00086 276 VLGVIALLMSIVVFYFFIFVNNY---TSCLNKLNKFLVFSFIVVNVILSWLGQCLVEYPFLFLSQIFSFIYFFLILLML 351
CYTB MTH00046
cytochrome b; Validated
 1-309 6.67e-84

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 257.60  E-value: 6.67e-84
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66821947    1 GLLMAMHYTADTTLAFTSVAHTCRNVQFGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLFKETWNTGIILLLTLMATA 80
Cdd:MTH00046  39 GVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLFILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEA 118

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66821947   81 FVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMIAGLTFIHLTFLHETGSNN 160
Cdd:MTH00046 119 FLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFSVTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSN 198

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66821947  161 PLGISSN-CDKIPFHPYFSIKDILGFLAMLIPLTALAMFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPN 239
Cdd:MTH00046 199 PLFSSNGySDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPDLVLDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRSINS 278

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66821947  240 KLGGvLALAASVLVLFLIPFLHKSKqrtmTFRPLSQLMFWILVTNLLILTWVGSQPVEHPFIIIGQLASL 309
Cdd:MTH00046 279 KIGG-LVLVLSFLFFLWVPTFNGSS----VYSVWRQVNFWLIVSLFFSLSYLGGCHPEYPYLLISQLFSV 343
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-159 5.68e-77

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 234.18  E-value: 5.68e-77
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66821947   1 GLLMAMHYTADTTLAFTSVAHTCRNVQFGWLIRNLHANGASMFFICIYLHIGRGLYYGSY--LFKETWNTGIILLLTLMA 78
Cdd:cd00284  40 GVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMA 119

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66821947  79 TAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMIAGLTFIHLTFLHETGS 158
Cdd:cd00284 120 TAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGS 199


                .
gi 66821947 159 N 159
Cdd:cd00284 200 S 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-157 1.79e-67

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 209.55  E-value: 1.79e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66821947     1 GLLMAMHYTADTTLAFTSVAHTCRNVQFGWLIRNLHANGASMFFICIYLHIGRGLYYG--SYLFKETWNTGIILLLTLMA 78
Cdd:pfam00033  31 GVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPRELTWVIGVILLVLTMS 110

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 66821947    79 TAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMIAGLTFIHLTFLHETG 157
Cdd:pfam00033 111 TAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 160-307 5.62e-58

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 184.00  E-value: 5.62e-58
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66821947 160 NPLGISSNCDKIPFHPYFSIKDILGFLAMLIPLTALAMFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPN 239
Cdd:cd00290   1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 66821947 240 KLGGVLALAASVLVLFLIPFLHKSKQRTmTFRPLSQLMFWILVTNLLILTWVGSQPVEHPFIIIGQLA 307
Cdd:cd00290  81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQLF 147
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
211-311 5.42e-49

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 159.18  E-value: 5.42e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66821947   211 PANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLVLFLIPFLHKSKQRTMTFRPLSQLMFWILVTNLLILTW 290
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90       100
                  ....*....|....*....|.
gi 66821947   291 VGSQPVEHPFIIIGQLASLTY 311
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
41-206 1.85e-44

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 150.08  E-value: 1.85e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66821947    41 SMFFICIYLHIGRGLYYGSYLFKE--TWNTGIILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAW 118
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66821947   119 GGFSVDNPTLTRFFALHF-LLPFMIAGLTFIHLTFLHETGSNNPLGISSNCDKIPFHPYFSIKDILGFLAMLIPLTALAM 197
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 66821947   198 FSPNLLGDP 206
Cdd:pfam13631 161 INPIWLGGP 169
PRK03735 PRK03735
cytochrome b6; Provisional
 1-162 3.73e-31

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 116.73  E-value: 3.73e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66821947    1 GLLMAMHYTADTTLAFTSVAHTCRNVQFGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLFKE--TWNTGIILLLTLMA 78
Cdd:PRK03735  59 GMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRelNWVVGVLIFFVTVG 138

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66821947   79 TAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALH-FLLPFMIAGLTFIHLTFLHETG 157
Cdd:PRK03735 139 LGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWALAVLMLAHFLMIRKQG 218


                 ....*
gi 66821947  158 SNNPL 162
Cdd:PRK03735 219 ISGPL 223
petB CHL00070
cytochrome b6
 1-162 5.98e-30

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 113.66  E-value: 5.98e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66821947    1 GLLMAMHYTADTTLAFTSVAHTCRNVQFGWLIRNLHANGASMFFICIYLHIGRGLYYGSylFKE----TWNTGIILLLTL 76
Cdd:CHL00070  51 GFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYLTGG--FKKprelTWVTGVVLAVLT 128

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66821947   77 MATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALH-FLLPFMIAGLTFIHLTFLHE 155
Cdd:CHL00070 129 VSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSLHtFVLPLLTAVFMLMHFLMIRK 208


                 ....*..
gi 66821947  156 TGSNNPL 162
Cdd:CHL00070 209 QGISGPL 215
petD CHL00058
cytochrome b6/f complex subunit IV
 182-280 5.45e-14

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 68.49  E-value: 5.45e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66821947  182 ILGFLAMLIpltALAMFSPNLLGDPenftpANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLVLFLIPFLH 261
Cdd:CHL00058  44 ILGTIACNV---GLAVLEPSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLE 115

                         90       100
                 ....*....|....*....|
gi 66821947  262 K-SKQRTMTFRPLSQLMFWI 280
Cdd:CHL00058 116 NvNKFQNPFRRPVATTVFLI 135
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 182-292 1.60e-13

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 67.51  E-value: 1.60e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66821947 182 ILGFLAMLIpltALAMFSPNLLGDPenftpANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLVLFLIPFLH 261
Cdd:COG5679  45 ILGTIALCI---GLAVLDPAMMGEP-----ADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPFIE 116

                        90       100       110
                ....*....|....*....|....*....|..
gi 66821947 262 KSKQRTMTF-RPLSQLMFWIlvtNLLILTWVG 292
Cdd:COG5679 117 NVNKFQNPFrRPVATAVFLF---GTLVTLWLG 145
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 182-292 2.31e-12

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 64.05  E-value: 2.31e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66821947   182 ILGFLAMLIpltALAMFSPNLLGDPenftpANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLVLFLIPFLH 261
Cdd:TIGR01156  44 ILGTIACVV---GLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIE 115

                          90       100       110
                  ....*....|....*....|....*....|..
gi 66821947   262 KSKQRTMTF-RPLSQLMFWIlvtNLLILTWVG 292
Cdd:TIGR01156 116 NVNKFQNPFrRPVATTVFLF---GTVVALWLG 144
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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