NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|6679229|ref|NP_032818|]
View 

neuroendocrine convertase 2 precursor [Mus musculus]

Protein Classification

S8 family peptidase( domain architecture ID 11242990)

S8 family peptidase is a subtilisin-like serine protease containing an Asp/His/Ser catalytic triad that is not homologous to trypsin; similar to human neuroendocrine convertase 2 that is involved in the processing of hormone and other protein precursors at sites comprised of pairs of basic amino acid residues

CATH:  3.40.50.200
EC:  3.4.-.-
Gene Ontology:  GO:0006508|GO:0004252
MEROPS:  S8
PubMed:  8439290|9070434
SCOP:  3000226

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
Peptidases_S8_Protein_convertases_Kexins_Furin-lik cd04059
Peptidase S8 family domain in Protein convertases; Protein convertases, whose members include ...
121-417 3.82e-174

Peptidase S8 family domain in Protein convertases; Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation.


:

Pssm-ID: 173789 [Multi-domain]  Cd Length: 297  Bit Score: 496.70  E-value: 3.82e-174
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6679229  121 NDPLFTKQWYLFNTGQADGTPGLDLNVAEAWELGYTGKGVTIGIMDDGIDYLHPDLAYNYNADASYDFSSNDPYPYPRYt 200
Cdd:cd04059   2 NDPLFPYQWYLKNTGQAGGTPGLDLNVTPAWEQGITGKGVTVAVVDDGLEITHPDLKDNYDPEASYDFNDNDPDPTPRY- 80
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6679229  201 dDWFNSHGTRCAGEVSAAASNNICGVGVAYNSKVAGIRMLDQPfMTDIIEASSISHMPQLIDIYSASWGPTDNGKTVDGP 280
Cdd:cd04059  81 -DDDNSHGTRCAGEIAAVGNNGICGVGVAPGAKLGGIRMLDGD-VTDVVEAESLGLNPDYIDIYSNSWGPDDDGKTVDGP 158
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6679229  281 RELTLQAMADGVNKGRGGKGSIYVWASGDGGSY-DDCNCDGYASSMWTISINSAINDGRTALYDESCSSTLASTFSNGRK 359
Cdd:cd04059 159 GPLAQRALENGVTNGRNGKGSIFVWAAGNGGNLgDNCNCDGYNNSIYTISVSAVTANGVRASYSEVGSSVLASAPSGGSG 238
                       250       260       270       280       290       300
                ....*....|....*....|....*....|....*....|....*....|....*....|
gi 6679229  360 rNPEAGVATTDLYG--NCTLRHSGTSAAAPEAAGVFALALEANLDLTWRDMQHLTVLTSK 417
Cdd:cd04059 239 -NPEASIVTTDLGGncNCTSSHNGTSAAAPLAAGVIALMLEANPNLTWRDVQHILALTAR 297
P_proprotein pfam01483
Proprotein convertase P-domain; A unique feature of the eukaryotic subtilisin-like proprotein ...
503-590 2.52e-31

Proprotein convertase P-domain; A unique feature of the eukaryotic subtilisin-like proprotein convertases is the presence of an additional highly conserved sequence of approximately 150 residues (P domain) located immediately downstream of the catalytic domain.


:

Pssm-ID: 460225 [Multi-domain]  Cd Length: 86  Bit Score: 116.98  E-value: 2.52e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6679229    503 LEHVQAVITVNATRRGDLNINMTSPMGTKSILLSRRPRDDDSKvGFDKWPFMTTHTWGEDARGTWTLELGFvGSAPQKGL 582
Cdd:pfam01483   1 LEHVQVSVNITHTRRGDLRITLTSPSGTRSVLLNRRGGDTSSA-GFLDWTFMSVHHWGERAEGTWTLEVTD-TAPGDTGT 78

                  ....*...
gi 6679229    583 LKEWTLML 590
Cdd:pfam01483  79 LNSWQLTL 86
S8_pro-domain pfam16470
Peptidase S8 pro-domain; This domain is the pro-domain of several peptidases belonging to ...
32-108 4.50e-23

Peptidase S8 pro-domain; This domain is the pro-domain of several peptidases belonging to family S8.


:

Pssm-ID: 465126  Cd Length: 77  Bit Score: 93.05  E-value: 4.50e-23
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 6679229     32 HFLVELHkDGEEEARQVAAEHGF-GVRKLPFAEGLYHFYHNGLAKAKRRRSLHHKRQLERDPRIKMALQQEGFDRKKR 108
Cdd:pfam16470   1 EWAVHLE-GGPEEADRIAEKHGFiNLGQIGGLEDYYHFRHRRVSKRSKRSLRHKHSRLKKDPKVKWAEQQRGKKRVKR 77
 
Name Accession Description Interval E-value
Peptidases_S8_Protein_convertases_Kexins_Furin-lik cd04059
Peptidase S8 family domain in Protein convertases; Protein convertases, whose members include ...
121-417 3.82e-174

Peptidase S8 family domain in Protein convertases; Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation.


Pssm-ID: 173789 [Multi-domain]  Cd Length: 297  Bit Score: 496.70  E-value: 3.82e-174
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6679229  121 NDPLFTKQWYLFNTGQADGTPGLDLNVAEAWELGYTGKGVTIGIMDDGIDYLHPDLAYNYNADASYDFSSNDPYPYPRYt 200
Cdd:cd04059   2 NDPLFPYQWYLKNTGQAGGTPGLDLNVTPAWEQGITGKGVTVAVVDDGLEITHPDLKDNYDPEASYDFNDNDPDPTPRY- 80
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6679229  201 dDWFNSHGTRCAGEVSAAASNNICGVGVAYNSKVAGIRMLDQPfMTDIIEASSISHMPQLIDIYSASWGPTDNGKTVDGP 280
Cdd:cd04059  81 -DDDNSHGTRCAGEIAAVGNNGICGVGVAPGAKLGGIRMLDGD-VTDVVEAESLGLNPDYIDIYSNSWGPDDDGKTVDGP 158
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6679229  281 RELTLQAMADGVNKGRGGKGSIYVWASGDGGSY-DDCNCDGYASSMWTISINSAINDGRTALYDESCSSTLASTFSNGRK 359
Cdd:cd04059 159 GPLAQRALENGVTNGRNGKGSIFVWAAGNGGNLgDNCNCDGYNNSIYTISVSAVTANGVRASYSEVGSSVLASAPSGGSG 238
                       250       260       270       280       290       300
                ....*....|....*....|....*....|....*....|....*....|....*....|
gi 6679229  360 rNPEAGVATTDLYG--NCTLRHSGTSAAAPEAAGVFALALEANLDLTWRDMQHLTVLTSK 417
Cdd:cd04059 239 -NPEASIVTTDLGGncNCTSSHNGTSAAAPLAAGVIALMLEANPNLTWRDVQHILALTAR 297
Peptidase_S8 pfam00082
Subtilase family; Subtilases are a family of serine proteases. They appear to have ...
157-444 4.14e-62

Subtilase family; Subtilases are a family of serine proteases. They appear to have independently and convergently evolved an Asp/Ser/His catalytic triad, like that found in the trypsin serine proteases (see pfam00089). Structure is an alpha/beta fold containing a 7-stranded parallel beta sheet, order 2314567.


Pssm-ID: 395035 [Multi-domain]  Cd Length: 287  Bit Score: 207.70  E-value: 4.14e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6679229    157 GKGVTIGIMDDGIDYLHPDLAYNYNADASYD----FSSNDPYPYPRYTDDWFNSHGTRCAGEVSAAASNNICGVGVAYNS 232
Cdd:pfam00082   1 GKGVVVAVLDTGIDPNHPDLSGNLDNDPSDDpeasVDFNNEWDDPRDDIDDKNGHGTHVAGIIAAGGNNSIGVSGVAPGA 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6679229    233 KVAGIRMLDQPFMTDIIEASSISH-MPQLIDIYSASWGPTdngKTVDGPRELTLQAMADGvnkGRGGKGSIYVWASGDGG 311
Cdd:pfam00082  81 KILGVRVFGDGGGTDAITAQAISWaIPQGADVINMSWGSD---KTDGGPGSWSAAVDQLG---GAEAAGSLFVWAAGNGS 154
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6679229    312 SYDDCNCDGY--ASSMWTISINSAindgrtalydESCSSTLASTFSNG-----RKRNPE----------------AGVAT 368
Cdd:pfam00082 155 PGGNNGSSVGypAQYKNVIAVGAV----------DEASEGNLASFSSYgptldGRLKPDivapggnitggnisstLLTTT 224
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 6679229    369 TDLYGNCTLRHSGTSAAAPEAAGVFALALEANLDLTWRDMQHLTVLTSKRNQlhdevhqwrrngvGLEFNHLFGYG 444
Cdd:pfam00082 225 SDPPNQGYDSMSGTSMATPHVAGAAALLKQAYPNLTPETLKALLVNTATDLG-------------DAGLDRLFGYG 287
AprE COG1404
Serine protease, subtilisin family [Posttranslational modification, protein turnover, ...
133-418 7.84e-36

Serine protease, subtilisin family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 441014 [Multi-domain]  Cd Length: 456  Bit Score: 140.62  E-value: 7.84e-36
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6679229  133 NTGQADGTPGLDLNVAEAWELGYTGKGVTIGIMDDGIDYLHPDLAYNYnaDASYDFSSNDPYPYprytDDwfNSHGTRCA 212
Cdd:COG1404  84 AAVRAAQAALLAAAAAGSSAAGLTGAGVTVAVIDTGVDADHPDLAGRV--VGGYDFVDGDGDPS----DD--NGHGTHVA 155
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6679229  213 GEVSAAASNNICGVGVAYNSKVAGIRMLDQP---FMTDIIEAssISHMPQL-IDIYSASWGPTDNGKTvdgpreltlQAM 288
Cdd:COG1404 156 GIIAANGNNGGGVAGVAPGAKLLPVRVLDDNgsgTTSDIAAA--IDWAADNgADVINLSLGGPADGYS---------DAL 224
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6679229  289 ADGVNKGRgGKGSIYVWASGDGGSYDDCNcdGY-ASSMWTISInSAINDgrtalydescSSTLAStFSNgrkRNPE---- 363
Cdd:COG1404 225 AAAVDYAV-DKGVLVVAAAGNSGSDDATV--SYpAAYPNVIAV-GAVDA----------NGQLAS-FSN---YGPKvdva 286
                       250       260       270       280       290
                ....*....|....*....|....*....|....*....|....*....|....*...
gi 6679229  364 ---AGVATTDLYGNcTLRHSGTSAAAPEAAGVFALALEANLDLTWRDMQHLTVLTSKR 418
Cdd:COG1404 287 apgVDILSTYPGGG-YATLSGTSMAAPHVAGAAALLLSANPDLTPAQVRAILLNTATP 343
P_proprotein pfam01483
Proprotein convertase P-domain; A unique feature of the eukaryotic subtilisin-like proprotein ...
503-590 2.52e-31

Proprotein convertase P-domain; A unique feature of the eukaryotic subtilisin-like proprotein convertases is the presence of an additional highly conserved sequence of approximately 150 residues (P domain) located immediately downstream of the catalytic domain.


Pssm-ID: 460225 [Multi-domain]  Cd Length: 86  Bit Score: 116.98  E-value: 2.52e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6679229    503 LEHVQAVITVNATRRGDLNINMTSPMGTKSILLSRRPRDDDSKvGFDKWPFMTTHTWGEDARGTWTLELGFvGSAPQKGL 582
Cdd:pfam01483   1 LEHVQVSVNITHTRRGDLRITLTSPSGTRSVLLNRRGGDTSSA-GFLDWTFMSVHHWGERAEGTWTLEVTD-TAPGDTGT 78

                  ....*...
gi 6679229    583 LKEWTLML 590
Cdd:pfam01483  79 LNSWQLTL 86
S8_pro-domain pfam16470
Peptidase S8 pro-domain; This domain is the pro-domain of several peptidases belonging to ...
32-108 4.50e-23

Peptidase S8 pro-domain; This domain is the pro-domain of several peptidases belonging to family S8.


Pssm-ID: 465126  Cd Length: 77  Bit Score: 93.05  E-value: 4.50e-23
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 6679229     32 HFLVELHkDGEEEARQVAAEHGF-GVRKLPFAEGLYHFYHNGLAKAKRRRSLHHKRQLERDPRIKMALQQEGFDRKKR 108
Cdd:pfam16470   1 EWAVHLE-GGPEEADRIAEKHGFiNLGQIGGLEDYYHFRHRRVSKRSKRSLRHKHSRLKKDPKVKWAEQQRGKKRVKR 77
T7SS_mycosin TIGR03921
type VII secretion-associated serine protease mycosin; Members of this family are ...
145-452 5.22e-13

type VII secretion-associated serine protease mycosin; Members of this family are subtilisin-related serine proteases, found strictly in the Actinobacteria and associated with type VII secretion operons. The designation mycosin is used for members from Mycobacterium. [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair]


Pssm-ID: 274856 [Multi-domain]  Cd Length: 350  Bit Score: 70.82  E-value: 5.22e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6679229    145 LNVAEAWELGyTGKGVTIGIMDDGIDyLHPDLAYNynADASYDFSSNDPYpypryTDDWfNSHGTRCAGEVSAAASNNIC 224
Cdd:TIGR03921   1 LSLEQAWKFS-TGAGVTVAVIDTGVD-DHPRLPGL--VLPGGDFVGSGDG-----TDDC-DGHGTLVAGIIAGRPGEGDG 70
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6679229    225 GVGVAYNSKVAGIRMLDQPFMTDI---------IEASSISHM----PQLIDIYSASWGPTDNGktVDGPrELTlQAMADG 291
Cdd:TIGR03921  71 FSGVAPDARILPIRQTSAAFEPDEgtsgvgdlgTLAKAIRRAadlgADVINISLVACLPAGSG--ADDP-ELG-AAVRYA 146
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6679229    292 VnkgrgGKGSIYVWASGDGGsyDDCNCDGYASSMWT---ISInSAINDGRTalydescsstlASTFSNGRkrnPEAGVA- 367
Cdd:TIGR03921 147 L-----DKGVVVVAAAGNTG--GDGQKTTVVYPAWYpgvLAV-GSIDRDGT-----------PSSFSLPG---PWVDLAa 204
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6679229    368 ------TTDLYGNCTLRHSGTSAAAPEAAGVFALALEANLDLTWRDMQHLTVLTSkrnqlhdevhqwrRNGVGLEFNHLF 441
Cdd:TIGR03921 205 pgenivSLSPGGDGLATTSGTSFAAPFVSGTAALVRSRFPDLTAAQVRRRIEATA-------------DHPARGGRDDYV 271
                         330
                  ....*....|.
gi 6679229    442 GYGVLDAGAMV 452
Cdd:TIGR03921 272 GYGVVDPVAAL 282
PTZ00262 PTZ00262
subtilisin-like protease; Provisional
160-257 1.68e-06

subtilisin-like protease; Provisional


Pssm-ID: 240338 [Multi-domain]  Cd Length: 639  Bit Score: 51.12  E-value: 1.68e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6679229   160 VTIGIMDDGIDYLHPDLAYNY-------------------NADASY--DFSSNDPYPypryTDDwfNSHGTRCAGEVSAA 218
Cdd:PTZ00262 318 TNICVIDSGIDYNHPDLHDNIdvnvkelhgrkgidddnngNVDDEYgaNFVNNDGGP----MDD--NYHGTHVSGIISAI 391
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 6679229   219 ASNNICGVGVAYNSKVAGIRMLDQP---FMTDIIE-----ASSISHM 257
Cdd:PTZ00262 392 GNNNIGIVGVDKRSKLIICKALDSHklgRLGDMFKcfdycISREAHM 438
germ_prot_CspBA NF040809
bifunctional germination protease/germinant receptor pseudoprotease CspBA; CspBA, as found in ...
153-178 1.38e-04

bifunctional germination protease/germinant receptor pseudoprotease CspBA; CspBA, as found in Clostridium difficile, is translated as a fusion protein, but cleaved into separate homologous CspB and CspA proteins during spore formation. CspB is a protease, required to active SleC by cleaving it in order to trigger germination. CspA, like the bile salt germinant receptor CspC (encoded by the adjacent gene), has lost the catalytic residues necessary for subtilisin-like serine protease activity.


Pssm-ID: 468750 [Multi-domain]  Cd Length: 1099  Bit Score: 45.15  E-value: 1.38e-04
                          10        20
                  ....*....|....*....|....*.
gi 6679229    153 LGYTGKGVTIGIMDDGIDYLHPDLAY 178
Cdd:NF040809  647 INLTGRGVLIAIADTGIDYLHPDFIY 672
CspC_non_triad NF040808
bile acid germinant receptor pseudoprotease CspC; Members of this family share homology with ...
156-253 3.48e-04

bile acid germinant receptor pseudoprotease CspC; Members of this family share homology with MEROPS S8 family serine proteases, but with substitutions that replace key catalytic residues, as seen in CD2246 from Clostridium difficile. The related germination-specific protease CspC of Clostridium perfringens, outside the scope of this model, retains its serine protease catalytic triad residues. Adjacent to CD2246 is the fusion protein CD2247, CspBA, in which the CspB region retains its subtilisin-like catalytic triad while the CspA, like CspC, has lost it.


Pssm-ID: 468749 [Multi-domain]  Cd Length: 556  Bit Score: 43.65  E-value: 3.48e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6679229   156 TGKGVTIGIMDDGIDYLHPDLaynYNADAS------YDFSSNDPYPyPR-------YTDDWFNSH--------------- 207
Cdd:NF040808  94 SGRGILIAIIDSGIDYLHPDF---INEDGTskivsiWDQESNKKPP-PEgmifgseFTREEINEAiknnngdlsrdeigt 169
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 6679229   208 GTRCAGEVSAAASNNICGVGVAYNSK--VAGIRMLDQPFMTDIIEASS 253
Cdd:NF040808 170 GTIAAGILVGQGKINSNYKGIAPNAEliVVKLREYIDTFKKGRINYQS 217
 
Name Accession Description Interval E-value
Peptidases_S8_Protein_convertases_Kexins_Furin-lik cd04059
Peptidase S8 family domain in Protein convertases; Protein convertases, whose members include ...
121-417 3.82e-174

Peptidase S8 family domain in Protein convertases; Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation.


Pssm-ID: 173789 [Multi-domain]  Cd Length: 297  Bit Score: 496.70  E-value: 3.82e-174
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6679229  121 NDPLFTKQWYLFNTGQADGTPGLDLNVAEAWELGYTGKGVTIGIMDDGIDYLHPDLAYNYNADASYDFSSNDPYPYPRYt 200
Cdd:cd04059   2 NDPLFPYQWYLKNTGQAGGTPGLDLNVTPAWEQGITGKGVTVAVVDDGLEITHPDLKDNYDPEASYDFNDNDPDPTPRY- 80
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6679229  201 dDWFNSHGTRCAGEVSAAASNNICGVGVAYNSKVAGIRMLDQPfMTDIIEASSISHMPQLIDIYSASWGPTDNGKTVDGP 280
Cdd:cd04059  81 -DDDNSHGTRCAGEIAAVGNNGICGVGVAPGAKLGGIRMLDGD-VTDVVEAESLGLNPDYIDIYSNSWGPDDDGKTVDGP 158
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6679229  281 RELTLQAMADGVNKGRGGKGSIYVWASGDGGSY-DDCNCDGYASSMWTISINSAINDGRTALYDESCSSTLASTFSNGRK 359
Cdd:cd04059 159 GPLAQRALENGVTNGRNGKGSIFVWAAGNGGNLgDNCNCDGYNNSIYTISVSAVTANGVRASYSEVGSSVLASAPSGGSG 238
                       250       260       270       280       290       300
                ....*....|....*....|....*....|....*....|....*....|....*....|
gi 6679229  360 rNPEAGVATTDLYG--NCTLRHSGTSAAAPEAAGVFALALEANLDLTWRDMQHLTVLTSK 417
Cdd:cd04059 239 -NPEASIVTTDLGGncNCTSSHNGTSAAAPLAAGVIALMLEANPNLTWRDVQHILALTAR 297
Peptidase_S8 pfam00082
Subtilase family; Subtilases are a family of serine proteases. They appear to have ...
157-444 4.14e-62

Subtilase family; Subtilases are a family of serine proteases. They appear to have independently and convergently evolved an Asp/Ser/His catalytic triad, like that found in the trypsin serine proteases (see pfam00089). Structure is an alpha/beta fold containing a 7-stranded parallel beta sheet, order 2314567.


Pssm-ID: 395035 [Multi-domain]  Cd Length: 287  Bit Score: 207.70  E-value: 4.14e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6679229    157 GKGVTIGIMDDGIDYLHPDLAYNYNADASYD----FSSNDPYPYPRYTDDWFNSHGTRCAGEVSAAASNNICGVGVAYNS 232
Cdd:pfam00082   1 GKGVVVAVLDTGIDPNHPDLSGNLDNDPSDDpeasVDFNNEWDDPRDDIDDKNGHGTHVAGIIAAGGNNSIGVSGVAPGA 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6679229    233 KVAGIRMLDQPFMTDIIEASSISH-MPQLIDIYSASWGPTdngKTVDGPRELTLQAMADGvnkGRGGKGSIYVWASGDGG 311
Cdd:pfam00082  81 KILGVRVFGDGGGTDAITAQAISWaIPQGADVINMSWGSD---KTDGGPGSWSAAVDQLG---GAEAAGSLFVWAAGNGS 154
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6679229    312 SYDDCNCDGY--ASSMWTISINSAindgrtalydESCSSTLASTFSNG-----RKRNPE----------------AGVAT 368
Cdd:pfam00082 155 PGGNNGSSVGypAQYKNVIAVGAV----------DEASEGNLASFSSYgptldGRLKPDivapggnitggnisstLLTTT 224
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 6679229    369 TDLYGNCTLRHSGTSAAAPEAAGVFALALEANLDLTWRDMQHLTVLTSKRNQlhdevhqwrrngvGLEFNHLFGYG 444
Cdd:pfam00082 225 SDPPNQGYDSMSGTSMATPHVAGAAALLKQAYPNLTPETLKALLVNTATDLG-------------DAGLDRLFGYG 287
AprE COG1404
Serine protease, subtilisin family [Posttranslational modification, protein turnover, ...
133-418 7.84e-36

Serine protease, subtilisin family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 441014 [Multi-domain]  Cd Length: 456  Bit Score: 140.62  E-value: 7.84e-36
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6679229  133 NTGQADGTPGLDLNVAEAWELGYTGKGVTIGIMDDGIDYLHPDLAYNYnaDASYDFSSNDPYPYprytDDwfNSHGTRCA 212
Cdd:COG1404  84 AAVRAAQAALLAAAAAGSSAAGLTGAGVTVAVIDTGVDADHPDLAGRV--VGGYDFVDGDGDPS----DD--NGHGTHVA 155
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6679229  213 GEVSAAASNNICGVGVAYNSKVAGIRMLDQP---FMTDIIEAssISHMPQL-IDIYSASWGPTDNGKTvdgpreltlQAM 288
Cdd:COG1404 156 GIIAANGNNGGGVAGVAPGAKLLPVRVLDDNgsgTTSDIAAA--IDWAADNgADVINLSLGGPADGYS---------DAL 224
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6679229  289 ADGVNKGRgGKGSIYVWASGDGGSYDDCNcdGY-ASSMWTISInSAINDgrtalydescSSTLAStFSNgrkRNPE---- 363
Cdd:COG1404 225 AAAVDYAV-DKGVLVVAAAGNSGSDDATV--SYpAAYPNVIAV-GAVDA----------NGQLAS-FSN---YGPKvdva 286
                       250       260       270       280       290
                ....*....|....*....|....*....|....*....|....*....|....*...
gi 6679229  364 ---AGVATTDLYGNcTLRHSGTSAAAPEAAGVFALALEANLDLTWRDMQHLTVLTSKR 418
Cdd:COG1404 287 apgVDILSTYPGGG-YATLSGTSMAAPHVAGAAALLLSANPDLTPAQVRAILLNTATP 343
Peptidases_S8_15 cd07498
Peptidase S8 family domain, uncharacterized subfamily 15; This family is a member of the ...
160-407 1.65e-31

Peptidase S8 family domain, uncharacterized subfamily 15; This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.


Pssm-ID: 173822 [Multi-domain]  Cd Length: 242  Bit Score: 122.84  E-value: 1.65e-31
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6679229  160 VTIGIMDDGIDYLHPDLAYNYNADASYDFSSNDPYPYPRYtddwfnSHGTRCAGeVSAAASNNICGV-GVAYNSKVAGIR 238
Cdd:cd07498   1 VVVAIIDTGVDLNHPDLSGKPKLVPGWNFVSNNDPTSDID------GHGTACAG-VAAAVGNNGLGVaGVAPGAKLMPVR 73
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6679229  239 MLD-QPFMTDIIEASSISH-MPQLIDIYSASWGPTDngktVDGPRELTLQAMAdgvNKGRGGKGSIYVWASGDGGSYDDc 316
Cdd:cd07498  74 IADsLGYAYWSDIAQAITWaADNGADVISNSWGGSD----STESISSAIDNAA---TYGRNGKGGVVLFAAGNSGRSVS- 145
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6679229  317 ncDGYASSMWTISInSAINDgrtalydescSSTLASTFSNGRKRN---PEAGVATTDLY--------GNCTLRHSGTSAA 385
Cdd:cd07498 146 --SGYAANPSVIAV-AATDS----------NDARASYSNYGNYVDlvaPGVGIWTTGTGrgsagdypGGGYGSFSGTSFA 212
                       250       260
                ....*....|....*....|..
gi 6679229  386 APEAAGVFALALEANLDLTWRD 407
Cdd:cd07498 213 SPVAAGVAALILSANPNLTPAE 234
P_proprotein pfam01483
Proprotein convertase P-domain; A unique feature of the eukaryotic subtilisin-like proprotein ...
503-590 2.52e-31

Proprotein convertase P-domain; A unique feature of the eukaryotic subtilisin-like proprotein convertases is the presence of an additional highly conserved sequence of approximately 150 residues (P domain) located immediately downstream of the catalytic domain.


Pssm-ID: 460225 [Multi-domain]  Cd Length: 86  Bit Score: 116.98  E-value: 2.52e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6679229    503 LEHVQAVITVNATRRGDLNINMTSPMGTKSILLSRRPRDDDSKvGFDKWPFMTTHTWGEDARGTWTLELGFvGSAPQKGL 582
Cdd:pfam01483   1 LEHVQVSVNITHTRRGDLRITLTSPSGTRSVLLNRRGGDTSSA-GFLDWTFMSVHHWGERAEGTWTLEVTD-TAPGDTGT 78

                  ....*...
gi 6679229    583 LKEWTLML 590
Cdd:pfam01483  79 LNSWQLTL 86
Peptidases_S8_S53 cd00306
Peptidase domain in the S8 and S53 families; Members of the peptidases S8 (subtilisin and ...
160-415 5.13e-31

Peptidase domain in the S8 and S53 families; Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values.


Pssm-ID: 173787 [Multi-domain]  Cd Length: 241  Bit Score: 121.54  E-value: 5.13e-31
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6679229  160 VTIGIMDDGIDYLHPDL-AYNYNADASYDFSSNDPYPYPRYTDdwfNSHGTRCAGEVsAAASNNICGVGVAYNSKVAGIR 238
Cdd:cd00306   1 VTVAVIDTGVDPDHPDLdGLFGGGDGGNDDDDNENGPTDPDDG---NGHGTHVAGII-AASANNGGGVGVAPGAKLIPVK 76
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6679229  239 MLDQPF---MTDIIEASSISHMPQLIDIYSASWGptdngktvdGPRELTLQAMADGVNKGRGGKGSIYVWASGDGGSYDD 315
Cdd:cd00306  77 VLDGDGsgsSSDIAAAIDYAAADQGADVINLSLG---------GPGSPPSSALSEAIDYALAKLGVLVVAAAGNDGPDGG 147
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6679229  316 CNCDGYASSMWTISInSAINDgrtalydescSSTLASTFSNGRKR-----NPEAGVATTDLYGNCTLRHSGTSAAAPEAA 390
Cdd:cd00306 148 TNIGYPAASPNVIAV-GAVDR----------DGTPASPSSNGGAGvdiaaPGGDILSSPTTGGGGYATLSGTSMAAPIVA 216
                       250       260
                ....*....|....*....|....*
gi 6679229  391 GVFALALEANLDLTWRDMQHLTVLT 415
Cdd:cd00306 217 GVAALLLSANPDLTPAQVKAALLST 241
Peptidases_S8_Subtilisin_like cd07473
Peptidase S8 family domain in Subtilisin-like proteins; This family is a member of the ...
158-407 2.18e-24

Peptidase S8 family domain in Subtilisin-like proteins; This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.


Pssm-ID: 173799 [Multi-domain]  Cd Length: 259  Bit Score: 102.66  E-value: 2.18e-24
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6679229  158 KGVTIGIMDDGIDYLHPDLAYNY--NADAS------------------YDFSSNDPYPYprytDDwfNSHGTRCAGEVSA 217
Cdd:cd07473   2 GDVVVAVIDTGVDYNHPDLKDNMwvNPGEIpgngidddgngyvddiygWNFVNNDNDPM----DD--NGHGTHVAGIIGA 75
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6679229  218 AASNNICGVGVAYNSKVAGIRMLD---QPFMTDIIEAssISHMPQL-IDIYSASWGPTdngktvdGPRELTLQAMADGvn 293
Cdd:cd07473  76 VGNNGIGIAGVAWNVKIMPLKFLGadgSGTTSDAIKA--IDYAVDMgAKIINNSWGGG-------GPSQALRDAIARA-- 144
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6679229  294 kgrGGKGSIYVWASGDGGSYDDcNCDGYASSM---WTISI-NSAINDGRtalydescsstlaSTFSNGrkrnpeaGVATT 369
Cdd:cd07473 145 ---IDAGILFVAAAGNDGTNND-KTPTYPASYdldNIISVaATDSNDAL-------------ASFSNY-------GKKTV 200
                       250       260       270       280
                ....*....|....*....|....*....|....*....|....*....
gi 6679229  370 DLY-----------GNCTLRHSGTSAAAPEAAGVFALALEANLDLTWRD 407
Cdd:cd07473 201 DLAapgvdilstspGGGYGYMSGTSMATPHVAGAAALLLSLNPNLTAAQ 249
S8_pro-domain pfam16470
Peptidase S8 pro-domain; This domain is the pro-domain of several peptidases belonging to ...
32-108 4.50e-23

Peptidase S8 pro-domain; This domain is the pro-domain of several peptidases belonging to family S8.


Pssm-ID: 465126  Cd Length: 77  Bit Score: 93.05  E-value: 4.50e-23
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 6679229     32 HFLVELHkDGEEEARQVAAEHGF-GVRKLPFAEGLYHFYHNGLAKAKRRRSLHHKRQLERDPRIKMALQQEGFDRKKR 108
Cdd:pfam16470   1 EWAVHLE-GGPEEADRIAEKHGFiNLGQIGGLEDYYHFRHRRVSKRSKRSLRHKHSRLKKDPKVKWAEQQRGKKRVKR 77
Peptidases_S8_Thermitase_like cd07484
Peptidase S8 family domain in Thermitase-like proteins; Thermitase is a non-specific, ...
121-395 6.24e-21

Peptidase S8 family domain in Thermitase-like proteins; Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53 the it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values.


Pssm-ID: 173810 [Multi-domain]  Cd Length: 260  Bit Score: 92.71  E-value: 6.24e-21
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6679229  121 NDPLFTKQWYLFNTGqadgtpgldlnVAEAWELGyTGKGVTIGIMDDGIDYLHPDLAyNYNADASYDFSSNDPYPypryT 200
Cdd:cd07484   3 NDPYYSYQWNLDQIG-----------APKAWDIT-GGSGVTVAVVDTGVDPTHPDLL-KVKFVLGYDFVDNDSDA----M 65
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6679229  201 DDwfNSHGTRCAGeVSAAASNNICGV-GVAYNSKVAGIRMLDQP---FMTDIIEAssishmpqlidIYSAswgpTDNGKT 276
Cdd:cd07484  66 DD--NGHGTHVAG-IIAAATNNGTGVaGVAPKAKIMPVKVLDANgsgSLADIANG-----------IRYA----ADKGAK 127
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6679229  277 VdgpRELTL------QAMADGVNKGRgGKGSIYVWASGDGGSYDdcnCDGYASSMWTISINSAINDGRTAlydescsstl 350
Cdd:cd07484 128 V---INLSLggglgsTALQEAINYAW-NKGVVVVAAAGNEGVSS---VSYPAAYPGAIAVAATDQDDKRA---------- 190
                       250       260       270       280
                ....*....|....*....|....*....|....*....|....*....
gi 6679229  351 asTFSNGRK----RNPEAGVATTDLYGNCTLrHSGTSAAAPEAAGVFAL 395
Cdd:cd07484 191 --SFSNYGKwvdvSAPGGGILSTTPDGDYAY-MSGTSMATPHVAGVAAL 236
Peptidases_S8_subtilisin_Vpr-like cd07474
Peptidase S8 family domain in Vpr-like proteins; The maturation of the peptide antibiotic ...
157-424 4.41e-19

Peptidase S8 family domain in Vpr-like proteins; The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.


Pssm-ID: 173800 [Multi-domain]  Cd Length: 295  Bit Score: 88.16  E-value: 4.41e-19
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6679229  157 GKGVTIGIMDDGIDYLHPDLA----YNYNADASYDFSSNDPYPYPRYTDDWF---------NSHGTRCAGEVSAAASNNI 223
Cdd:cd07474   1 GKGVKVAVIDTGIDYTHPDLGgpgfPNDKVKGGYDFVDDDYDPMDTRPYPSPlgdasagdaTGHGTHVAGIIAGNGVNVG 80
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6679229  224 CGVGVAYNSKVAGIRMLD---QPFMTDIIEA---SSISHMpqliDIYSASWGPTDNGKtvDGPRELTLQAMADGvnkgrg 297
Cdd:cd07474  81 TIKGVAPKADLYAYKVLGpggSGTTDVIIAAieqAVDDGM----DVINLSLGSSVNGP--DDPDAIAINNAVKA------ 148
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6679229  298 gkGSIYVWASGDGGsyDDCNCDG-YASSmwtisiNSAINDGRTALYDESCSSTLASTFSNG-RKRN----PEAGVATTDL 371
Cdd:cd07474 149 --GVVVVAAAGNSG--PAPYTIGsPATA------PSAITVGASTVADVAEADTVGPSSSRGpPTSDsaikPDIVAPGVDI 218
                       250       260       270       280       290
                ....*....|....*....|....*....|....*....|....*....|....*....
gi 6679229  372 ------YGNCTLRHSGTSAAAPEAAGVFALALEANLDLTWRDMQHLTVLTSKrnQLHDE 424
Cdd:cd07474 219 mstapgSGTGYARMSGTSMAAPHVAGAAALLKQAHPDWSPAQIKAALMNTAK--PLYDS 275
Peptidases_S8_Autotransporter_serine_protease_like cd04848
Peptidase S8 family domain in Autotransporter serine proteases; Autotransporter serine ...
156-399 7.43e-19

Peptidase S8 family domain in Autotransporter serine proteases; Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface.


Pssm-ID: 173794 [Multi-domain]  Cd Length: 267  Bit Score: 86.99  E-value: 7.43e-19
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6679229  156 TGKGVTIGIMDDGIDYLHPDLAyNYNADASYDFSSNDPYPYPRYTDDwfnSHGTRCAGeVSAAASNNICGVGVAYNSKVA 235
Cdd:cd04848   1 TGAGVKVGVIDSGIDLSHPEFA-GRVSEASYYVAVNDAGYASNGDGD---SHGTHVAG-VIAAARDGGGMHGVAPDATLY 75
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6679229  236 GIRMLD---QPFMTDIIEASSISHMPQLIDIYSASWGPTDNGKTVDGPREL--------TLQAMADGVNkgrggKGSIYV 304
Cdd:cd04848  76 SARASAsagSTFSDADIAAAYDFLAASGVRIINNSWGGNPAIDTVSTTYKGsaatqgntLLAALARAAN-----AGGLFV 150
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6679229  305 WASGDGGSYDDcncDGYASSM----------WtISINSAINDGRTALYDES--C----SSTLAStfsngrkrnPEAGVAT 368
Cdd:cd04848 151 FAAGNDGQANP---SLAAAALpylepeleggW-IAVVAVDPNGTIASYSYSnrCgvaaNWCLAA---------PGENIYS 217
                       250       260       270
                ....*....|....*....|....*....|..
gi 6679229  369 TDLYGNCTL-RHSGTSAAAPEAAGVFALALEA 399
Cdd:cd04848 218 TDPDGGNGYgRVSGTSFAAPHVSGAAALLAQK 249
Peptidases_S8_Fervidolysin_like cd07485
Peptidase S8 family domain in Fervidolysin; Fervidolysin found in Fervidobacterium pennivorans ...
149-399 7.45e-19

Peptidase S8 family domain in Fervidolysin; Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values.


Pssm-ID: 173811 [Multi-domain]  Cd Length: 273  Bit Score: 87.16  E-value: 7.45e-19
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6679229  149 EAWELGYTGKGVTIGIMDDGIDYLHPDLAYNYNADAsYDFSSNDPYPYPRYTD-DWFNS----HGTRCAGEVsAAASNNI 223
Cdd:cd07485   1 AAWEFGTGGPGIIVAVVDTGVDGTHPDLQGNGDGDG-YDPAVNGYNFVPNVGDiDNDVSvgggHGTHVAGTI-AAVNNNG 78
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6679229  224 CGVG-------VAYNSKVAGIRMLDQP-FMTDIIEASSISHMPQL-IDIYSASWGPTDNGKTvdgpRELTLQAMADGVNK 294
Cdd:cd07485  79 GGVGgiagaggVAPGVKIMSIQIFAGRyYVGDDAVAAAIVYAADNgAVILQNSWGGTGGGIY----SPLLKDAFDYFIEN 154
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6679229  295 GRGG--KGSIYVWASGDggSYDDCncdGYASSMWTISINSAINDgrtalYDESCSStlastFSN-GRKRNPEA-GVAT-- 368
Cdd:cd07485 155 AGGSplDGGIVVFSAGN--SYTDE---HRFPAAYPGVIAVAALD-----TNDNKAS-----FSNyGRWVDIAApGVGTil 219
                       250       260       270
                ....*....|....*....|....*....|....*..
gi 6679229  369 -TDLYGNCTL-----RHSGTSAAAPEAAGVFALALEA 399
Cdd:cd07485 220 sTVPKLDGDGggnyeYLSGTSMAAPHVSGVAALVLSK 256
Peptidases_S8_Subtilisin_subset cd07477
Peptidase S8 family domain in Subtilisin proteins; This group is composed of many different ...
159-404 4.68e-17

Peptidase S8 family domain in Subtilisin proteins; This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thought it has a 30% difference in amino acid sequence. The substrate binding regions are also similar and 2 possible Ca2+ binding sites have been identified recently. Subtilisin Carlsberg possesses the highest commercial importance as a proteolytic additive for detergents. Serine protease Pb92, the serine protease from the alkalophilic Bacillus strain PB92, also contains two calcium ions and the overall folding of the polypeptide chain closely resembles that of the subtilisins. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.


Pssm-ID: 173803 [Multi-domain]  Cd Length: 229  Bit Score: 80.65  E-value: 4.68e-17
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6679229  159 GVTIGIMDDGIDYLHPDLAYNYNadASYDFSSNDPYPYprytdDWFNSHGTRCAGEVsAAASNNICGVGVAYNSKVAGIR 238
Cdd:cd07477   1 GVKVAVIDTGIDSSHPDLKLNIV--GGANFTGDDNNDY-----QDGNGHGTHVAGII-AALDNGVGVVGVAPEADLYAVK 72
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6679229  239 MLDQP---FMTDIIEA--SSISHMpqlIDIYSASWGPTDNGKTVdgpRELTLQAMADGVnkgrggkgsIYVWASGDGGSY 313
Cdd:cd07477  73 VLNDDgsgTYSDIIAGieWAIENG---MDIINMSLGGPSDSPAL---REAIKKAYAAGI---------LVVAAAGNSGNG 137
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6679229  314 DDCNCD--GYASsmwTISInSAIN-DGRTAlydescsstlasTFSNgrkRNPE-------AGVATTDLYGNCTlRHSGTS 383
Cdd:cd07477 138 DSSYDYpaKYPS---VIAV-GAVDsNNNRA------------SFSS---TGPEvelaapgVDILSTYPNNDYA-YLSGTS 197
                       250       260
                ....*....|....*....|.
gi 6679229  384 AAAPEAAGVFALALEANLDLT 404
Cdd:cd07477 198 MATPHVAGVAALVWSKRPELT 218
Peptidases_S8_1 cd07487
Peptidase S8 family domain, uncharacterized subfamily 1; This family is a member of the ...
157-404 5.08e-13

Peptidase S8 family domain, uncharacterized subfamily 1; This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.


Pssm-ID: 173812 [Multi-domain]  Cd Length: 264  Bit Score: 69.54  E-value: 5.08e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6679229  157 GKGVTIGIMDDGIDYLHPDL--AYNYNADAsYDFSSNDPYPYprytDDwfNSHGTRCAGEVSAA-ASNNICGVGVAYNSK 233
Cdd:cd07487   1 GKGITVAVLDTGIDAPHPDFdgRIIRFADF-VNTVNGRTTPY----DD--NGHGTHVAGIIAGSgRASNGKYKGVAPGAN 73
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6679229  234 VAGIRMLDQP---FMTDIIEAssISHMPQL-----IDIYSASWGPTDNgktVDGPRELTLQAmadgVNKgrggkgsiyVW 305
Cdd:cd07487  74 LVGVKVLDDSgsgSESDIIAG--IDWVVENnekynIRVVNLSLGAPPD---PSYGEDPLCQA----VER---------LW 135
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6679229  306 ASG---------DGGSYDDCNCDGYASSMwtISINSAINDGRTALYDESCSStLASTFSnGRKrNPE---AGV-----AT 368
Cdd:cd07487 136 DAGivvvvaagnSGPGPGTITSPGNSPKV--ITVGAVDDNGPHDDGISYFSS-RGPTGD-GRI-KPDvvaPGEnivscRS 210
                       250       260       270       280
                ....*....|....*....|....*....|....*....|.
gi 6679229  369 TDLYGNCTLRH-----SGTSAAAPEAAGVFALALEANLDLT 404
Cdd:cd07487 211 PGGNPGAGVGSgyfemSGTSMATPHVSGAIALLLQANPILT 251
T7SS_mycosin TIGR03921
type VII secretion-associated serine protease mycosin; Members of this family are ...
145-452 5.22e-13

type VII secretion-associated serine protease mycosin; Members of this family are subtilisin-related serine proteases, found strictly in the Actinobacteria and associated with type VII secretion operons. The designation mycosin is used for members from Mycobacterium. [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair]


Pssm-ID: 274856 [Multi-domain]  Cd Length: 350  Bit Score: 70.82  E-value: 5.22e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6679229    145 LNVAEAWELGyTGKGVTIGIMDDGIDyLHPDLAYNynADASYDFSSNDPYpypryTDDWfNSHGTRCAGEVSAAASNNIC 224
Cdd:TIGR03921   1 LSLEQAWKFS-TGAGVTVAVIDTGVD-DHPRLPGL--VLPGGDFVGSGDG-----TDDC-DGHGTLVAGIIAGRPGEGDG 70
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6679229    225 GVGVAYNSKVAGIRMLDQPFMTDI---------IEASSISHM----PQLIDIYSASWGPTDNGktVDGPrELTlQAMADG 291
Cdd:TIGR03921  71 FSGVAPDARILPIRQTSAAFEPDEgtsgvgdlgTLAKAIRRAadlgADVINISLVACLPAGSG--ADDP-ELG-AAVRYA 146
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6679229    292 VnkgrgGKGSIYVWASGDGGsyDDCNCDGYASSMWT---ISInSAINDGRTalydescsstlASTFSNGRkrnPEAGVA- 367
Cdd:TIGR03921 147 L-----DKGVVVVAAAGNTG--GDGQKTTVVYPAWYpgvLAV-GSIDRDGT-----------PSSFSLPG---PWVDLAa 204
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6679229    368 ------TTDLYGNCTLRHSGTSAAAPEAAGVFALALEANLDLTWRDMQHLTVLTSkrnqlhdevhqwrRNGVGLEFNHLF 441
Cdd:TIGR03921 205 pgenivSLSPGGDGLATTSGTSFAAPFVSGTAALVRSRFPDLTAAQVRRRIEATA-------------DHPARGGRDDYV 271
                         330
                  ....*....|.
gi 6679229    442 GYGVLDAGAMV 452
Cdd:TIGR03921 272 GYGVVDPVAAL 282
Peptidases_S8_13 cd07496
Peptidase S8 family domain, uncharacterized subfamily 13; This family is a member of the ...
159-404 3.09e-12

Peptidase S8 family domain, uncharacterized subfamily 13; This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.


Pssm-ID: 173820 [Multi-domain]  Cd Length: 285  Bit Score: 67.70  E-value: 3.09e-12
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6679229  159 GVTIGIMDDGIDYLHPDLA------YNY--NADASYDFSSNDPYPypRYTDDWFNS------------------HGTRCA 212
Cdd:cd07496   1 GVVVAVLDTGVLFHHPDLAgvllpgYDFisDPAIANDGDGRDSDP--TDPGDWVTGddvppggfcgsgvspsswHGTHVA 78
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6679229  213 GeVSAAASNNICGV-GVAYNSKVAGIRMLDQ--PFMTDIIEAssishmpqlidIYSASWGPTDNGKTVDGPRE---LTL- 285
Cdd:cd07496  79 G-TIAAVTNNGVGVaGVAWGARILPVRVLGKcgGTLSDIVDG-----------MRWAAGLPVPGVPVNPNPAKvinLSLg 146
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6679229  286 ------QAMADGVNKGRgGKGSIYVWASGDGGS----YDDCNCDGyassmwTISINSAINDGRTALY-------DES--- 345
Cdd:cd07496 147 gdgacsATMQNAINDVR-ARGVLVVVAAGNEGSsasvDAPANCRG------VIAVGATDLRGQRASYsnygpavDVSapg 219
                       250       260       270       280       290       300
                ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 6679229  346 --CSSTLASTfsNGRKRNPEAGVATTDLYGNctlrHSGTSAAAPEAAGVFALALEANLDLT 404
Cdd:cd07496 220 gdCASDVNGD--GYPDSNTGTTSPGGSTYGF----LQGTSMAAPHVAGVAALMKSVNPSLT 274
Peptidases_S8_5 cd07489
Peptidase S8 family domain, uncharacterized subfamily 5; gap in seq This family is a member of ...
152-399 1.31e-11

Peptidase S8 family domain, uncharacterized subfamily 5; gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.


Pssm-ID: 173814 [Multi-domain]  Cd Length: 312  Bit Score: 66.09  E-value: 1.31e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6679229  152 ELGYTGKGVTIGIMDDGIDYLHPDL----------AYNYNADASYDFSSNDPYPypryTDDWF--NSHGTRCAGEVsAAA 219
Cdd:cd07489   7 AEGITGKGVKVAVVDTGIDYTHPALggcfgpgckvAGGYDFVGDDYDGTNPPVP----DDDPMdcQGHGTHVAGII-AAN 81
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6679229  220 SNNICGVGVAYNSKVAGIRMLDQPFMTD---IIEASSISH---MpqliDIYSASWGpTDNGKTvDGPRELTLQAMAD-GV 292
Cdd:cd07489  82 PNAYGFTGVAPEATLGAYRVFGCSGSTTedtIIAAFLRAYedgA----DVITASLG-GPSGWS-EDPWAVVASRIVDaGV 155
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6679229  293 -------NKGRGGKGSIYVWASGDG----GSYDDcncdgYASSmWtisinsaindGRTalYDESCSSTLA-------STF 354
Cdd:cd07489 156 vvtiaagNDGERGPFYASSPASGRGviavASVDS-----YFSS-W----------GPT--NELYLKPDVAapggnilSTY 217
                       250       260       270       280
                ....*....|....*....|....*....|....*....|....*
gi 6679229  355 SNGrkrnpEAGVATTdlygnctlrhSGTSAAAPEAAGVFALALEA 399
Cdd:cd07489 218 PLA-----GGGYAVL----------SGTSMATPYVAGAAALLIQA 247
Peptidases_S8_Kp43_protease cd04842
Peptidase S8 family domain in Kp43 proteases; Kp43 proteases are members of the peptidase S8 ...
153-399 2.10e-11

Peptidase S8 family domain in Kp43 proteases; Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases


Pssm-ID: 173791 [Multi-domain]  Cd Length: 293  Bit Score: 65.04  E-value: 2.10e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6679229  153 LGYTGKGVTIGIMDDGIDYLHPDLaYNYNADASYDFSS--NDPYPYPRYTDDwFNSHGTRCAGEVSAAASNNICGV---G 227
Cdd:cd04842   2 LGLTGKGQIVGVADTGLDTNHCFF-YDPNFNKTNLFHRkiVRYDSLSDTKDD-VDGHGTHVAGIIAGKGNDSSSISlykG 79
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6679229  228 VAYNSKVAGIRMLDqpfmtDIIEASSISHMPQLID--------IYSASWGPTDNGKTVDGPRELTLQAmadgvnkgRGGK 299
Cdd:cd04842  80 VAPKAKLYFQDIGD-----TSGNLSSPPDLNKLFSpmydagarISSNSWGSPVNNGYTLLARAYDQFA--------YNNP 146
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6679229  300 GSIYVWASGDGGSYDDCNCDGYASSMWTISI----NSAINDGRTALYDESCSSTLASTFS-----NGRkRNPE------- 363
Cdd:cd04842 147 DILFVFSAGNDGNDGSNTIGSPATAKNVLTVgasnNPSVSNGEGGLGQSDNSDTVASFSSrgptyDGR-IKPDlvapgtg 225
                       250       260       270       280
                ....*....|....*....|....*....|....*....|..
gi 6679229  364 -----AGVATTDLYGNCTL-RHSGTSAAAPEAAGVFALALEA 399
Cdd:cd04842 226 ilsarSGGGGIGDTSDSAYtSKSGTSMATPLVAGAAALLRQY 267
Peptidases_S8_6 cd07490
Peptidase S8 family domain, uncharacterized subfamily 6; This family is a member of the ...
159-416 1.81e-10

Peptidase S8 family domain, uncharacterized subfamily 6; This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.


Pssm-ID: 173815 [Multi-domain]  Cd Length: 254  Bit Score: 61.80  E-value: 1.81e-10
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6679229  159 GVTIGIMDDGIDYLHPDLAYNYNADASYDFSSNDPYPYPrytDDwFNSHGTRCAGEVsAAASNNICGVGVAYNSKVAGIR 238
Cdd:cd07490   1 GVTVAVLDTGVDADHPDLAGRVAQWADFDENRRISATEV---FD-AGGHGTHVSGTI-GGGGAKGVYIGVAPEADLLHGK 75
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6679229  239 MLDQPFMTdiiEASSISHMPQLI----DIYSASWGPTDngkTVDGPreltlqaMADGVNKGRGGKGSIYVWASG-DGGSY 313
Cdd:cd07490  76 VLDDGGGS---LSQIIAGMEWAVekdaDVVSMSLGGTY---YSEDP-------LEEAVEALSNQTGALFVVSAGnEGHGT 142
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6679229  314 DDCNCDGYASsmwtISINSAINDGRTALYdESCSSTLASTFSNGRKRNPEA---GVAT--TDLYGNCTL--------RHS 380
Cdd:cd07490 143 SGSPGSAYAA----LSVGAVDRDDEDAWF-SSFGSSGASLVSAPDSPPDEYtkpDVAApgVDVYSARQGangdgqytRLS 217
                       250       260       270
                ....*....|....*....|....*....|....*.
gi 6679229  381 GTSAAAPEAAGVFALALEANLDLTWRdmQHLTVLTS 416
Cdd:cd07490 218 GTSMAAPHVAGVAALLAAAHPDLSPE--QIKDALTE 251
Peptidases_S53 cd04056
Peptidase domain in the S53 family; Members of the peptidases S53 (sedolisin) family include ...
150-402 1.83e-10

Peptidase domain in the S53 family; Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functions as a tripeptidyl exopeptidase as well as an endopeptidase. Less is known about PSCP from Pseudomonas which is thought to be an aspartic proteinase.


Pssm-ID: 173788 [Multi-domain]  Cd Length: 361  Bit Score: 63.10  E-value: 1.83e-10
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6679229  150 AWELGYTGKGVTIGIMDDGIDYLHP-DLA-----YNYNADASYDFSSNDPYPYPRYTDDWfnshgtrcAGEVS-----AA 218
Cdd:cd04056  13 IPPLGYTGSGQTIGIIEFGGGYYNPsDLQtffqlFGLPAPTVFIVVVIGGGNAPGTSSGW--------GGEASldveyAG 84
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6679229  219 AsnnicgvgVAYNSKV----AGIRmLDQPFMTDIIEAssISHMPQLIDIYSASWG------PTDNGKTVDgprELTLQAM 288
Cdd:cd04056  85 A--------IAPGANItlyfAPGT-VTNGPLLAFLAA--VLDNPNLPSVISISYGepeqslPPAYAQRVC---NLFAQAA 150
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6679229  289 ADGVnkgrggkgSIYVwASGDGGSYDDCNC--------DGYASSMW--------------TISINSAINDGRTALY---- 342
Cdd:cd04056 151 AQGI--------TVLA-ASGDSGAGGCGGDgsgtgfsvSFPASSPYvtavggttlytggtGSSAESTVWSSEGGWGgsgg 221
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6679229  343 ------------DESCSSTLASTFSNGRKR---------NPEAGVAttdLYGNCTLRH-SGTSAAAPEAAGVFALALEAN 400
Cdd:cd04056 222 gfsnyfprpsyqSGAVLGLPPSGLYNGSGRgvpdvaanaDPGTGYL---VVVNGQWYLvGGTSAAAPLFAGLIALINQAR 298

                ..
gi 6679229  401 LD 402
Cdd:cd04056 299 LA 300
Peptidases_S8_12 cd07480
Peptidase S8 family domain, uncharacterized subfamily 12; This family is a member of the ...
155-407 4.06e-10

Peptidase S8 family domain, uncharacterized subfamily 12; This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.


Pssm-ID: 173806 [Multi-domain]  Cd Length: 297  Bit Score: 61.24  E-value: 4.06e-10
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6679229  155 YTGKGVTIGIMDDGIDYLHPDLAynYNADASYDFSsndpypyPRYTDDWFNSHGTRCAGEVSAAASNNIcGVGVAYNSKV 234
Cdd:cd07480   5 FTGAGVRVAVLDTGIDLTHPAFA--GRDITTKSFV-------GGEDVQDGHGHGTHCAGTIFGRDVPGP-RYGVARGAEI 74
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6679229  235 AGI-RMLDQPFMTD--IIEASS--ISHMPQLIdiySASWGPTDNGKTVDGP---------------RELTLQAMADGVN- 293
Cdd:cd07480  75 ALIgKVLGDGGGGDggILAGIQwaVANGADVI---SMSLGADFPGLVDQGWppglafsraleayrqRARLFDALMTLVAa 151
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6679229  294 KGRGGKGSIYVWASG-----DGGSYDDCNCDGYASSMWTISINSainDGRTALYDESCSstlastFSNGRKRNPEAGVAT 368
Cdd:cd07480 152 QAALARGTLIVAAAGnesqrPAGIPPVGNPAACPSAMGVAAVGA---LGRTGNFSAVAN------FSNGEVDIAAPGVDI 222
                       250       260       270       280
                ....*....|....*....|....*....|....*....|
gi 6679229  369 TDLYGNCTLRH-SGTSAAAPEAAGVFALALEANLDLTWRD 407
Cdd:cd07480 223 VSAAPGGGYRSmSGTSMATPHVAGVAALWAEALPKAGGRA 262
COG4935 COG4935
Regulatory P domain of the subtilisin-like proprotein convertases and other proteases ...
133-588 4.49e-09

Regulatory P domain of the subtilisin-like proprotein convertases and other proteases [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443962 [Multi-domain]  Cd Length: 641  Bit Score: 59.45  E-value: 4.49e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6679229  133 NTGQADGTPGLDLNVAEAWELGYTGKGVTIGIMDDGIDYLHPDLAYNYNADASYDFSSNDPYPYPRYTDDWFNSHGTRCA 212
Cdd:COG4935 184 AGLVADGGNGGGGAVAGGAAGGGGGGGGGGGLGGAAGGGGAGLAAAGGGGGGAAAAAAAGVGGLGAAATAAAADGGGGGG 263
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6679229  213 GEVSAAASNNICGVGVAYNSKVAGIRMLDqpFMTDIIEASSISHMPQLIDIYSASWGPTDNGKTVDGPRELTLQAMADGV 292
Cdd:COG4935 264 AGAAGAGGSAGAAAGGAGAGVVGAAAGGG--DAALGGAVGAAGTGNAAAAAAASAGSGGGGGSAAAAGAAAAAAAAAAGA 341
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6679229  293 NKGRGGKGSIYVWASGDGGSYDD-----CNCDGYASSMWTISINSAINDGRTALYDESCSSTLASTFSNGRKRNPEAGVA 367
Cdd:COG4935 342 AAGVSGAASVVAGASGGGAGTAAaagggAAAAAAGGAAAAGAAAGAAAGAAAGAAAAGGVASAAGAVGAGTAAGASATAA 421
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6679229  368 TTDLYGNCTLRHSGTSAAAPEAAGVFALALEANLDLTWRDMQHLTVLTS-----KRNQLHDEVHQWRRNGVGLEFNHLFG 442
Cdd:COG4935 422 VSTGAASGSSTTSSTGTTATATGLGGGADAGSTSTGTGSAAGAAGGTTTatsglASSTTAAAAAAAAGLATTAAVAAGAA 501
                       330       340       350       360       370       380       390       400
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6679229  443 YGVLDAGAMVKMAKDWKTVPERFHCVGGSVQNPEKIPPTGKLVLTLKTNACEGKEnfvryLEHVQAVITVNATRRGDLNI 522
Cdd:COG4935 502 GAAAAAATAASVGGATGAAGTTNSTATFSNTTDVAIPDNGPAGVTSTITVSGGGA-----VEDVTVTVDITHTYRGDLVI 576
                       410       420       430       440       450       460
                ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 6679229  523 NMTSPMGTKSILLSRRPRDDDskvGFDkWPFMTTHTWGEDARGTWTLELGFVGSApQKGLLKEWTL 588
Cdd:COG4935 577 TLISPDGTTVVLKNRSGGSAD---NIN-ATFDVANFSGESANGTWTLRVVDTAGG-DTGTLNSWSL 637
Peptidases_S8_Lantibiotic_specific_protease cd07482
Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific ...
160-400 6.98e-09

Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases; Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53 the it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values.


Pssm-ID: 173808 [Multi-domain]  Cd Length: 294  Bit Score: 57.38  E-value: 6.98e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6679229  160 VTIGIMDDGIDYLHPDLAY-------NYNADASYDFSSNDPYPYPRYTDDWfNSHGTRCAGEVSAAASNNicgvGVAYNS 232
Cdd:cd07482   2 VTVAVIDSGIDPDHPDLKNsissyskNLVPKGGYDGKEAGETGDINDIVDK-LGHGTAVAGQIAANGNIK----GVAPGI 76
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6679229  233 KVAGIRMLDQ---PFMTDIIEA---SSISHmpqlIDIYSASWGPTDNGKTVDGPRELTLQAMADGVNKGRgGKGSIYVWA 306
Cdd:cd07482  77 GIVSYRVFGScgsAESSWIIKAiidAADDG----VDVINLSLGGYLIIGGEYEDDDVEYNAYKKAINYAK-SKGSIVVAA 151
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6679229  307 SGDGGsYDDCN--------------------CDGYASSMWTISINSAINDGRTALYDESCSS---------TLASTFSNG 357
Cdd:cd07482 152 AGNDG-LDVSNkqelldflssgddfsvngevYDVPASLPNVITVSATDNNGNLSSFSNYGNSridlaapggDFLLLDQYG 230
                       250       260       270       280
                ....*....|....*....|....*....|....*....|....*...
gi 6679229  358 RKRNPEAGVATTDLY-----GNCTLRHSGTSAAAPEAAGVFALALEAN 400
Cdd:cd07482 231 KEKWVNNGLMTKEQIlttapEGGYAYMYGTSLAAPKVSGALALIIDKN 278
Peptidases_S8_BacillopeptidaseF-like cd07481
Peptidase S8 family domain in BacillopeptidaseF-like proteins; Bacillus subtilis produces and ...
157-400 7.94e-09

Peptidase S8 family domain in BacillopeptidaseF-like proteins; Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity.


Pssm-ID: 173807 [Multi-domain]  Cd Length: 264  Bit Score: 57.00  E-value: 7.94e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6679229  157 GKGVTIGIMDDGIDYLHPDLA--YNYNADASYDFSSN--DPY-PYPRYTDDWfnSHGTRCAGevSAAASNNI-CGVGVAY 230
Cdd:cd07481   1 GTGIVVANIDTGVDWTHPALKnkYRGWGGGSADHDYNwfDPVgNTPLPYDDN--GHGTHTMG--TMVGNDGDgQQIGVAP 76
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6679229  231 NSKVAGIRMLDQPFMTD--IIEA----------SSISHMPQLI-DIYSASWG--PTDNGktvdgprelTLQAMADGVNKG 295
Cdd:cd07481  77 GARWIACRALDRNGGNDadYLRCaqwmlaptdsAGNPADPDLApDVINNSWGgpSGDNE---------WLQPAVAAWRAA 147
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6679229  296 rggkGSIYVWASGDGGSYdDCNCDG----YASSMWTISINSaiNDgrtALYDescSSTLASTFSNGRKRNPEA-GVAT-T 369
Cdd:cd07481 148 ----GIFPVFAAGNDGPR-CSTLNAppanYPESFAVGATDR--ND---VLAD---FSSRGPSTYGRIKPDISApGVNIrS 214
                       250       260       270
                ....*....|....*....|....*....|.
gi 6679229  370 DLYGNCTLRHSGTSAAAPEAAGVFALALEAN 400
Cdd:cd07481 215 AVPGGGYGSSSGTSMAAPHVAGVAALLWSAN 245
Peptidases_S8_10 cd07494
Peptidase S8 family domain, uncharacterized subfamily 10; This family is a member of the ...
145-407 6.61e-08

Peptidase S8 family domain, uncharacterized subfamily 10; This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.


Pssm-ID: 173819 [Multi-domain]  Cd Length: 298  Bit Score: 54.41  E-value: 6.61e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6679229  145 LNVAEAWELGYTGKGVTIGIMDDGIDYLHPDLAYNYNADASYDFSSNDPypyprYTDDwfNSHGTrcagevsaAASNNIc 224
Cdd:cd07494   8 LNATRVHQRGITGRGVRVAMVDTGFYAHPFFESRGYQVRVVLAPGATDP-----ACDE--NGHGT--------GESANL- 71
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6679229  225 gVGVAYNSKVAGIRMlDQPFMTDIIEA--SSISHMPqliDIYSASWG------PTDNGKTVDGPRELTLQAMADGVNkgr 296
Cdd:cd07494  72 -FAIAPGAQFIGVKL-GGPDLVNSVGAfkKAISLSP---DIISNSWGydlrspGTSWSRSLPNALKALAATLQDAVA--- 143
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6679229  297 ggKGSIYVWASGDGGSyddcncdGYASSM-WTISINSAINDGRTALYDESCSSTLASTFSNGRKRNPEAGVATTDLYG-- 373
Cdd:cd07494 144 --RGIVVVFSAGNGGW-------SFPAQHpEVIAAGGVFVDEDGARRASSYASGFRSKIYPGRQVPDVCGLVGMLPHAay 214
                       250       260       270       280       290
                ....*....|....*....|....*....|....*....|....*....|....*....
gi 6679229  374 -------------NCTLRH------------SGTSAAAPEAAGVFALALEANLDLTWRD 407
Cdd:cd07494 215 lmlpvppgsqldrSCAAFPdgtppndgwgvfSGTSAAAPQVAGVCALMLQANPGLSPER 273
Peptidases_S8_C5a_Peptidase cd07475
Peptidase S8 family domain in Streptococcal C5a peptidases; Streptococcal C5a peptidase (SCP), ...
149-435 8.61e-08

Peptidase S8 family domain in Streptococcal C5a peptidases; Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.


Pssm-ID: 173801 [Multi-domain]  Cd Length: 346  Bit Score: 54.58  E-value: 8.61e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6679229  149 EAW-ELGYTGKGVTIGIMDDGIDYLHPDLAYNYNADASYDFSSND-----------------PYPYpRYTD--------D 202
Cdd:cd07475   1 PLWdKGGYKGEGMVVAVIDSGVDPTHDAFRLDDDSKAKYSEEFEAkkkkagigygkyynekvPFAY-NYADnnddildeD 79
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6679229  203 WFNSHGTRCAGEVSAAASNNICG---VGVAYNSKVAGIRMLDQP---FMTDIIEASSISHMPQL-IDIYSASWGPTDNGK 275
Cdd:cd07475  80 DGSSHGMHVAGIVAGNGDEEDNGegiKGVAPEAQLLAMKVFSNPeggSTYDDAYAKAIEDAVKLgADVINMSLGSTAGFV 159
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6679229  276 TVDGPRELTLQAMADgvnkgrggKGSIYVWASGDggsyddcncDGYASSMWTISINSAIND----GRTALYDEscSSTLA 351
Cdd:cd07475 160 DLDDPEQQAIKRARE--------AGVVVVVAAGN---------DGNSGSGTSKPLATNNPDtgtvGSPATADD--VLTVA 220
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6679229  352 StfSNGRKRNPEAGVA--------TTDL-----------------YGNCTLRHSGTSAAAPEAAGVFALALEA----NLD 402
Cdd:cd07475 221 S--ANKKVPNPNGGQMsgfsswgpTPDLdlkpditapggniystvNDNTYGYMSGTSMASPHVAGASALVKQRlkekYPK 298
                       330       340       350       360
                ....*....|....*....|....*....|....*....|
gi 6679229  403 LTWRDMQHLT--VLTSKRNQLHDEVHQW-----RRNGVGL 435
Cdd:cd07475 299 LSGEELVDLVknLLMNTATPPLDSEDTKtyyspRRQGAGL 338
Peptidases_S8_PCSK9_ProteinaseK_like cd04077
Peptidase S8 family domain in ProteinaseK-like proteins; The peptidase S8 or Subtilase clan of ...
155-404 1.71e-07

Peptidase S8 family domain in ProteinaseK-like proteins; The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding motifs found in these differ. Proteinase T is a novel proteinase from the fungus Tritirachium album Limber. The amino acid sequence of proteinase T as deduced from the nucleotide sequence is about 56% identical to that of proteinase K.


Pssm-ID: 173790 [Multi-domain]  Cd Length: 255  Bit Score: 52.90  E-value: 1.71e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6679229  155 YTGKGVTIGIMDDGIDYLHPDlaYNYNADASYDFSSNDPypyprYTDDwfNSHGTRCAGevsAAASNNicgVGVAYNSKV 234
Cdd:cd04077  22 STGSGVDVYVLDTGIRTTHVE--FGGRAIWGADFVGGDP-----DSDC--NGHGTHVAG---TVGGKT---YGVAKKANL 86
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6679229  235 AGIRMLD---QPFMTDIIEAssishmpqlIDiYSASWGPTDNGKTV-----DGPRELTL-QAMADGVNkgrggKGSIYVW 305
Cdd:cd04077  87 VAVKVLDcngSGTLSGIIAG---------LE-WVANDATKRGKPAVanmslGGGASTALdAAVAAAVN-----AGVVVVV 151
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6679229  306 ASGDGGSyDDCNcdgY--ASSMWTISI-NSAINDGRtalydescsstlaSTFSN-GRKRN---PeaGVATTDLY---GNC 375
Cdd:cd04077 152 AAGNSNQ-DACN---YspASAPEAITVgATDSDDAR-------------ASFSNyGSCVDifaP--GVDILSAWigsDTA 212
                       250       260
                ....*....|....*....|....*....
gi 6679229  376 TLRHSGTSAAAPEAAGVFALALEANLDLT 404
Cdd:cd04077 213 TATLSGTSMAAPHVAGLAAYLLSLGPDLS 241
Peptidases_S8_11 cd04843
Peptidase S8 family domain, uncharacterized subfamily 11; This family is a member of the ...
145-397 1.74e-07

Peptidase S8 family domain, uncharacterized subfamily 11; This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.


Pssm-ID: 173792  Cd Length: 277  Bit Score: 53.09  E-value: 1.74e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6679229  145 LNVAEAW-ELGYTGKGVTIGIMDDGIDYLHPDLAYNynadasydFSSndpyPYPRYTDDWFNSHGTRCAGEVsAAASNNI 223
Cdd:cd04843   2 INARYAWtKPGGSGQGVTFVDIEQGWNLNHEDLVGN--------GIT----LISGLTDQADSDHGTAVLGII-VAKDNGI 68
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6679229  224 CGVGVAYNSKVAGIrmlDQPFMTDIIEA--SSISHMpQLIDI--YSASWGPTDNGkTVDGPRELtLQAMADGVNKGRgGK 299
Cdd:cd04843  69 GVTGIAHGAQAAVV---SSTRVSNTADAilDAADYL-SPGDVilLEMQTGGPNNG-YPPLPVEY-EQANFDAIRTAT-DL 141
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6679229  300 GSIYVWASGDGGSydDCNCDGYASSMWTISINSAINDGRTALYDESCSSTLAST--FSN-GRKRNPEA---GVATTDLYG 373
Cdd:cd04843 142 GIIVVEAAGNGGQ--DLDAPVYNRGPILNRFSPDFRDSGAIMVGAGSSTTGHTRlaFSNyGSRVDVYGwgeNVTTTGYGD 219
                       250       260       270
                ....*....|....*....|....*....|...
gi 6679229  374 NC---------TLRHSGTSAAAPEAAGvfALAL 397
Cdd:cd04843 220 LQdlggenqdyTDSFSGTSSASPIVAG--AAAS 250
Peptidases_S8_14 cd07497
Peptidase S8 family domain, uncharacterized subfamily 14; This family is a member of the ...
157-399 3.02e-07

Peptidase S8 family domain, uncharacterized subfamily 14; This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.


Pssm-ID: 173821 [Multi-domain]  Cd Length: 311  Bit Score: 52.47  E-value: 3.02e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6679229  157 GKGVTIGIMDDGIDYLHPDLAYNYNAD--ASYDFSSndpYPYPRYtDDW---------FNSHGTRCAgevSAAASN---- 221
Cdd:cd07497   1 GEGVVIAIVDTGVDYSHPDLDIYGNFSwkLKFDYKA---YLLPGM-DKWggfyvimydFFSHGTSCA---SVAAGRgkme 73
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6679229  222 -NICG-------VGVAYNSKVAGIR-------MLDQPFMTDI----IEASSISHMPQLIDIYSASWGPTDNGKTVDGPre 282
Cdd:cd07497  74 yNLYGytgkfliRGIAPDAKIAAVKalwfgdvIYAWLWTAGFdpvdRKLSWIYTGGPRVDVISNSWGISNFAYTGYAP-- 151
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6679229  283 lTLQAMADGVNKGRGGKGSIYVWASGDGG-SYDDCNCDGyASSMwTISINSAINDGRTALYdescsSTLASTFSNG---- 357
Cdd:cd07497 152 -GLDISSLVIDALVTYTGVPIVSAAGNGGpGYGTITAPG-AASL-AISVGAATNFDYRPFY-----LFGYLPGGSGdvvs 223
                       250       260       270       280       290       300
                ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 6679229  358 -RKRNP-EAGVATTDL-----YGNCTLR----------------HSGTSAAAPEAAGVFALALEA 399
Cdd:cd07497 224 wSSRGPsIAGDPKPDLaaigaFAWAPGRvldsggaldgneafdlFGGTSMATPMTAGSAALVISA 288
Peptidases_S8_CspA-like cd07478
Peptidase S8 family domain in CspA-like proteins; GSP (germination-specific protease) converts ...
155-235 3.44e-07

Peptidase S8 family domain in CspA-like proteins; GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.


Pssm-ID: 173804 [Multi-domain]  Cd Length: 455  Bit Score: 53.01  E-value: 3.44e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6679229  155 YTGKGVTIGIMDDGIDYLHPD---------LAYNYNADASYDFSSNDPYPYPRYTDDWFN------------------SH 207
Cdd:cd07478   1 LTGKGVLVGIIDTGIDYLHPEfrnedgttrILYIWDQTIPGGPPPGGYYGGGEYTEEIINaalasdnpydivpsrdenGH 80
                        90       100
                ....*....|....*....|....*...
gi 6679229  208 GTRCAGEVSAAASNNICGVGVAYNSKVA 235
Cdd:cd07478  81 GTHVAGIAAGNGDNNPDFKGVAPEAELI 108
PTZ00262 PTZ00262
subtilisin-like protease; Provisional
160-257 1.68e-06

subtilisin-like protease; Provisional


Pssm-ID: 240338 [Multi-domain]  Cd Length: 639  Bit Score: 51.12  E-value: 1.68e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6679229   160 VTIGIMDDGIDYLHPDLAYNY-------------------NADASY--DFSSNDPYPypryTDDwfNSHGTRCAGEVSAA 218
Cdd:PTZ00262 318 TNICVIDSGIDYNHPDLHDNIdvnvkelhgrkgidddnngNVDDEYgaNFVNNDGGP----MDD--NYHGTHVSGIISAI 391
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 6679229   219 ASNNICGVGVAYNSKVAGIRMLDQP---FMTDIIE-----ASSISHM 257
Cdd:PTZ00262 392 GNNNIGIVGVDKRSKLIICKALDSHklgRLGDMFKcfdycISREAHM 438
Peptidases_S8_8 cd07492
Peptidase S8 family domain, uncharacterized subfamily 8; This family is a member of the ...
159-411 5.69e-05

Peptidase S8 family domain, uncharacterized subfamily 8; This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.


Pssm-ID: 173817 [Multi-domain]  Cd Length: 222  Bit Score: 44.64  E-value: 5.69e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6679229  159 GVTIGIMDDGIDYLHPDLAYN-YNADASYDFSSNDPYPYPRYtddwFNSHGTRCAGEVSAAASNNICGvgvaynskVAGI 237
Cdd:cd07492   1 GVRVAVIDSGVDTDHPDLGNLaLDGEVTIDLEIIVVSAEGGD----KDGHGTACAGIIKKYAPEAEIG--------SIKI 68
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6679229  238 RMLDQPFMTDIIEASSISHMPQLIDIYSASWGptdngktVDGPREL-TLQAMADGVNKGRGgkgsIYVWASGDGGSYDDC 316
Cdd:cd07492  69 LGEDGRCNSFVLEKALRACVENDIRIVNLSLG-------GPGDRDFpLLKELLEYAYKAGG----IIVAAAPNNNDIGTP 137
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6679229  317 NCdgyassmwtiSINSAINDGRTALYDESCSSTLASTFSngrkrNPEAGVATTDLYGNcTLRHSGTSAAAPEAAGVFALA 396
Cdd:cd07492 138 PA----------SFPNVIGVKSDTADDPKSFWYIYVEFS-----ADGVDIIAPAPHGR-YLTVSGNSFAAPHVTGMVALL 201
                       250
                ....*....|....*
gi 6679229  397 LEANLDLTWRDMQHL 411
Cdd:cd07492 202 LSEKPDIDANDLKRL 216
Peptidases_S53_like cd05562
Peptidase domain in the S53 family; Members of the peptidase S53 (sedolisin) family include ...
368-452 9.66e-05

Peptidase domain in the S53 family; Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functions as a tripeptidyl exopeptidase as well as an endopeptidase. Less is known about PSCP from Pseudomonas which is thought to be an aspartic proteinase.


Pssm-ID: 173798 [Multi-domain]  Cd Length: 275  Bit Score: 44.59  E-value: 9.66e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6679229  368 TTDLYGNCTLRHSGTSAAAPEAAGVFALALEANLDLTWRDMqhLTVLTSKRNQLHdevhqwrrnGVGleFNHLFGYGVLD 447
Cdd:cd05562 202 TVDGDGDGPPNFFGTSAAAPHAAGVAALVLSANPGLTPADI--RDALRSTALDMG---------EPG--YDNASGSGLVD 268

                ....*
gi 6679229  448 AGAMV 452
Cdd:cd05562 269 ADRAV 273
germ_prot_CspBA NF040809
bifunctional germination protease/germinant receptor pseudoprotease CspBA; CspBA, as found in ...
153-178 1.38e-04

bifunctional germination protease/germinant receptor pseudoprotease CspBA; CspBA, as found in Clostridium difficile, is translated as a fusion protein, but cleaved into separate homologous CspB and CspA proteins during spore formation. CspB is a protease, required to active SleC by cleaving it in order to trigger germination. CspA, like the bile salt germinant receptor CspC (encoded by the adjacent gene), has lost the catalytic residues necessary for subtilisin-like serine protease activity.


Pssm-ID: 468750 [Multi-domain]  Cd Length: 1099  Bit Score: 45.15  E-value: 1.38e-04
                          10        20
                  ....*....|....*....|....*.
gi 6679229    153 LGYTGKGVTIGIMDDGIDYLHPDLAY 178
Cdd:NF040809  647 INLTGRGVLIAIADTGIDYLHPDFIY 672
Peptidases_S8_7 cd07491
Peptidase S8 family domain, uncharacterized subfamily 7; This family is a member of the ...
160-397 1.94e-04

Peptidase S8 family domain, uncharacterized subfamily 7; This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.


Pssm-ID: 173816  Cd Length: 247  Bit Score: 43.48  E-value: 1.94e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6679229  160 VTIGIMDDGIDYLHPDLAYNYNADASYDFSSNDPY-PYPrytddWFNS---HGT---RCAGEVSAAASNNICGVGVaYNS 232
Cdd:cd07491   5 IKVALIDDGVDILDSDLQGKIIGGKSFSPYEGDGNkVSP-----YYVSadgHGTamaRMICRICPSAKLYVIKLED-RPS 78
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6679229  233 KVAGIRMLDQPFMTDIIEASSISHmpqlIDIYSASWGPTDNGKTVDGPRELtlqamaDGVNKGRGGKGSIYVWASGDGGS 312
Cdd:cd07491  79 PDSNKRSITPQSAAKAIEAAVEKK----VDIISMSWTIKKPEDNDNDINEL------ENAIKEALDRGILLFCSASDQGA 148
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6679229  313 YDDCNcdgYASSMWT---ISINSAINDGRtaLYDESCSSTLASTFSNGRKRNPEAgvatTDLYGNCTLRHSGTSAAAPEA 389
Cdd:cd07491 149 FTGDT---YPPPAARdriFRIGAADEDGG--ADAPVGDEDRVDYILPGENVEARD----RPPLSNSFVTHTGSSVATALA 219

                ....*...
gi 6679229  390 AGVFALAL 397
Cdd:cd07491 220 AGLAALIL 227
CspC_non_triad NF040808
bile acid germinant receptor pseudoprotease CspC; Members of this family share homology with ...
156-253 3.48e-04

bile acid germinant receptor pseudoprotease CspC; Members of this family share homology with MEROPS S8 family serine proteases, but with substitutions that replace key catalytic residues, as seen in CD2246 from Clostridium difficile. The related germination-specific protease CspC of Clostridium perfringens, outside the scope of this model, retains its serine protease catalytic triad residues. Adjacent to CD2246 is the fusion protein CD2247, CspBA, in which the CspB region retains its subtilisin-like catalytic triad while the CspA, like CspC, has lost it.


Pssm-ID: 468749 [Multi-domain]  Cd Length: 556  Bit Score: 43.65  E-value: 3.48e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6679229   156 TGKGVTIGIMDDGIDYLHPDLaynYNADAS------YDFSSNDPYPyPR-------YTDDWFNSH--------------- 207
Cdd:NF040808  94 SGRGILIAIIDSGIDYLHPDF---INEDGTskivsiWDQESNKKPP-PEgmifgseFTREEINEAiknnngdlsrdeigt 169
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 6679229   208 GTRCAGEVSAAASNNICGVGVAYNSK--VAGIRMLDQPFMTDIIEASS 253
Cdd:NF040808 170 GTIAAGILVGQGKINSNYKGIAPNAEliVVKLREYIDTFKKGRINYQS 217
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH