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Conserved domains on  [gi|667699636|ref|YP_009047273|]
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NADH dehydrogenase subunit 5 (mitochondrion) [Drosophila melanogaster]

Protein Classification

NADH dehydrogenase subunit 5( domain architecture ID 11475935)

NADH dehydrogenase subunit 5 (ND5/NADH5) is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain; the immediate electron acceptor for the enzyme is believed to be ubiquinone

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
1-562 0e+00

NADH dehydrogenase subunit 5; Provisional


:

Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 694.58  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636   1 MCSISFVNLISMSLSCFLLSLYFLLNDMIYFIEWELVSLNSMSIVMTFLFDWMSLLFMSFVLMISSLVIFYSKEYMMNDN 80
Cdd:MTH00165   3 MCLISFFFLFFLSLILFFLGLYFLLNDYSLFIEWELFSLNSSSIVMTFLFDWMSLLFMSFVLFISSMVIYYSKSYMSGDK 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636  81 HINRFIMLVLMFVLSMMLLIISPNLISILLGWDGLGLVSYCLVIYFQNIKSYNAGMLTALSNRIGDVALLLSIAWMLNYG 160
Cdd:MTH00165  83 NINRFIYLVLLFVLSMMLLIISPNLISILLGWDGLGLVSYCLVIYYQNKKSYNAGMLTALSNRIGDVAILLSIAWMMNFG 162
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 161 SWNYIFYLEIMQNEFEMLMIGSLVMLAAMTKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFNIILSTSWL 240
Cdd:MTH00165 163 SWNFIFYLDFMKNSFEMLLIGLLIMLAAMTKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFNNLLFSSFF 242
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 241 GQLMLLLSGLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGFLKLAMFHLLTHALFKALLFMCAGAIIHNMNNS 320
Cdd:MTH00165 243 SKFLLLISLLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSLGFPKLAFFHLLTHALFKALLFLCAGSIIHNMSNS 322
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 321 QDIRLMGGLSIHMPLTSACFNVSNLALCGMPFLAGFYSKDMILEIVSISNVNMFSFFLYYFSTGLTVSYSFRLVYYSMTG 400
Cdd:MTH00165 323 QDIRFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMVSMSNLNFFIFFLFFFSTGLTVSYSFRLIYYSMSG 402
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 401 DLNCGSLNMLNDESWIMLRGMMGLLIMSIIGGSMLNWLIFPFPYMICLPIYMKLLTLFVCIVGGLFGYLISLSNLFFLNK 480
Cdd:MTH00165 403 DFNLKSLNNLSDESKFMLKSMILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLTLFVILLGGWLGYELSLMSLSYNLK 482
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 481 SLFMYNLSTFLGSMWFMPYISTYGMIFYPLNYGQLVVKSFDQGWSEYFGGQHLYQKLSMYSKTLFLMHNNSLKIYLLLFV 560
Cdd:MTH00165 483 SLKNYKLSSFLGSMWFMPFLSTYGISYYPLNLGSLSLKSFDQGWSEYFGGQGLYNFLKKLSKLIQWLQNNNLKIYLLSFL 562

                 ..
gi 667699636 561 FW 562
Cdd:MTH00165 563 LW 564
 
Name Accession Description Interval E-value
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
1-562 0e+00

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 694.58  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636   1 MCSISFVNLISMSLSCFLLSLYFLLNDMIYFIEWELVSLNSMSIVMTFLFDWMSLLFMSFVLMISSLVIFYSKEYMMNDN 80
Cdd:MTH00165   3 MCLISFFFLFFLSLILFFLGLYFLLNDYSLFIEWELFSLNSSSIVMTFLFDWMSLLFMSFVLFISSMVIYYSKSYMSGDK 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636  81 HINRFIMLVLMFVLSMMLLIISPNLISILLGWDGLGLVSYCLVIYFQNIKSYNAGMLTALSNRIGDVALLLSIAWMLNYG 160
Cdd:MTH00165  83 NINRFIYLVLLFVLSMMLLIISPNLISILLGWDGLGLVSYCLVIYYQNKKSYNAGMLTALSNRIGDVAILLSIAWMMNFG 162
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 161 SWNYIFYLEIMQNEFEMLMIGSLVMLAAMTKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFNIILSTSWL 240
Cdd:MTH00165 163 SWNFIFYLDFMKNSFEMLLIGLLIMLAAMTKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFNNLLFSSFF 242
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 241 GQLMLLLSGLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGFLKLAMFHLLTHALFKALLFMCAGAIIHNMNNS 320
Cdd:MTH00165 243 SKFLLLISLLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSLGFPKLAFFHLLTHALFKALLFLCAGSIIHNMSNS 322
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 321 QDIRLMGGLSIHMPLTSACFNVSNLALCGMPFLAGFYSKDMILEIVSISNVNMFSFFLYYFSTGLTVSYSFRLVYYSMTG 400
Cdd:MTH00165 323 QDIRFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMVSMSNLNFFIFFLFFFSTGLTVSYSFRLIYYSMSG 402
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 401 DLNCGSLNMLNDESWIMLRGMMGLLIMSIIGGSMLNWLIFPFPYMICLPIYMKLLTLFVCIVGGLFGYLISLSNLFFLNK 480
Cdd:MTH00165 403 DFNLKSLNNLSDESKFMLKSMILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLTLFVILLGGWLGYELSLMSLSYNLK 482
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 481 SLFMYNLSTFLGSMWFMPYISTYGMIFYPLNYGQLVVKSFDQGWSEYFGGQHLYQKLSMYSKTLFLMHNNSLKIYLLLFV 560
Cdd:MTH00165 483 SLKNYKLSSFLGSMWFMPFLSTYGISYYPLNLGSLSLKSFDQGWSEYFGGQGLYNFLKKLSKLIQWLQNNNLKIYLLSFL 562

                 ..
gi 667699636 561 FW 562
Cdd:MTH00165 563 LW 564
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
9-470 7.65e-104

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 325.57  E-value: 7.65e-104
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636   9 LISMSLSCFLLSLYFL---LNDMIYFIEWELVSLNSMSIVMTFLFDWMSLLFMSFVLMISSLVIFYSKEYMMNDNHINRF 85
Cdd:COG1009   34 AALAPLAAFVLSLLLFpavLGGEVVVELYTWIPVGSLGLDFGFRLDGLSLLMLLLVTGVGLLVHIYSIGYMSGDPGLARF 113
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636  86 IMLVLMFVLSMMLLIISPNLISILLGWDGLGLVSYCLV-IYFQNIKSYNAGMLTALSNRIGDVALLLSIAWMLNY-GSWN 163
Cdd:COG1009  114 FAYLLLFMAAMLGLVLSDNLLLLFVFWELVGLCSYLLIgFWYEKPSARRAARKAFLVTRVGDLGLLLGILLLGAIaGTLN 193
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 164 Y--IF-YLEIMQNEFEMLMIGSLVMLAAMTKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFNIILS-TSW 239
Cdd:COG1009  194 FseLLaAAPTILSSPLLTLILLLLLLGAFGKSAQFPLHFWLPDAMEGPTPVSALLHAATMVKAGVYLLARLSPLFAlSPV 273
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 240 LGQLMLLLSGLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGFLKLAMFHLLTHALFKALLFMCAGAIIHNMnN 319
Cdd:COG1009  274 WLTVVAIIGAITALFAALIALAQTDIKRVLAYSTVSQLGYMFLALGVGAYVAALFHLLTHAFFKALLFLGAGSVIHAT-G 352
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 320 SQDIRLMGGLSIHMPLTSACFNVSNLALCGMPFLAGFYSKDMILE-IVSISNVNMFSFFLYYFSTGLTVSYSFRLVYYSM 398
Cdd:COG1009  353 TRDIRKMGGLRKKMPITAITFLIGALSLAGIPPFAGFFSKEAILEaALEAGGLGPLLLAVALLGAFLTAFYSFRLFFLVF 432
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 399 TGDLNCGSLNMLNDESWIMLRGMMGLLIMSIIGGSMLNWL---------IFPFPYMICLPIYMKLLTLFVCIVGGLFGYL 469
Cdd:COG1009  433 FGKPRPKTPKHPHESPWLMTLPLVVLAVLSLVLGLLLPGLlegllapaaVLGGELHLAHGLLLNALPLLLSLLGIALGYL 512

                 .
gi 667699636 470 I 470
Cdd:COG1009  513 L 513
NDH_I_L TIGR01974
proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th ...
9-481 2.18e-94

proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th (based on E. coli) structural gene, L, of bacterial NADH dehydrogenase I, as well as chain 5 of the corresponding mitochondrial complex I and subunit 5 (or F) of the chloroplast NAD(P)H-plastoquinone dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273905 [Multi-domain]  Cd Length: 609  Bit Score: 300.74  E-value: 2.18e-94
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636    9 LISMSLSCFLLSLYFLLNDMIYFIE--WELVSLNSMSIVMTFLFDWMSLLFMSFVLMISSLVIFYSKEYMMNDNHINRFI 86
Cdd:TIGR01974  38 GLSAALSAFVFVDFFLNGEGEAFTQslFPWISVGGFQVDFGLRLDGLSLTMLVVVTGVGSLVHIYSIGYMAHDEGYSRFF 117
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636   87 MLVLMFVLSMMLLIISPNLISILLGWDGLGLVSYCLV-IYFQNIKSYNAGMLTALSNRIGDVALLLSIAWMLNY-GSWNY 164
Cdd:TIGR01974 118 AYLNLFTFSMLMLVLADNFLQLFFGWEGVGLCSYLLIgFWYKKPSANNAAIKAFVVNRVGDFGLLLGIFLIFWYfGTLNF 197
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636  165 --IFYLEImQNEFEMLMIGSLVML-AAMTKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFN-IILSTSWL 240
Cdd:TIGR01974 198 qeVFALAP-GAFFSALTLICLLLFiGAMGKSAQLPLHTWLPDAMEGPTPVSALIHAATMVTAGVYLVARTSpLFELSPTA 276
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636  241 GQLMLLLSGLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGFLKLAMFHLLTHALFKALLFMCAGAIIHNMNNS 320
Cdd:TIGR01974 277 LYLVTIIGAITALFAATVALVQNDIKRILAYSTMSQLGYMFLALGVGAYAAAIFHLMTHAFFKALLFLGAGSVIHAMHHE 356
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636  321 QDIRLMGGLSIHMPLTSACFNVSNLALCGMPFLAGFYSKDMILEIVSISNVNMFSFFLYYFSTGLTVSYSFRLVYYSMTG 400
Cdd:TIGR01974 357 QDIRKMGGLRKKMPVTYITFLIGSLALIGFPGFAGFFSKDLILEAAFASGTHSFLFVAGLIGAFLTAFYSFRLIFMVFHG 436
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636  401 DLNCGSLNMLNDESWIMLRGMMGLLIMSIIGGSMLNWLIFPFPYMI-----------CLPIYMKLLTLFVCIVGGLFGYL 469
Cdd:TIGR01974 437 KERHEADAHPHESPLVMLLPLIVLAVGSVFAGFFIVPLFEFLKGVLptsaepalehhHVPALEIWSPTAVAILGILLAYL 516
                         490
                  ....*....|..
gi 667699636  470 ISLSNLFFLNKS 481
Cdd:TIGR01974 517 LYLGNPTLPAKI 528
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
102-378 2.33e-56

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 191.37  E-value: 2.33e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636  102 SPNLISILLGWDGLGLVSYCLVIYF-QNIKSYNAGMLTALSNRIGDVALLLSIAWMLNYGSWNYIFYL----EIMQNEFE 176
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGYWgKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskalTGGLNSSG 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636  177 MLMIGSLVMLAAMTKSAQIPFSSWLPAA-MAAPTPVSALVhSSTLVTAGVYLLIRFNIILSTS--WLGQLMLLLSGLTMF 253
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAyEGAPTPVSALL-AATLVKAGGYGLIRRSLLYLPSspFIQQILLILAIISML 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636  254 MAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGF---LKLAMFHLLTHALFKALLFMCAGAIIHNMNNSQDIRLMGGLS 330
Cdd:pfam00361 160 LGSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTiygIQAAIFHLLTHGLFSAGLFLCAGSVIYRRVHTRNIRDYGGLA 239
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*...
gi 667699636  331 IHMPLTSACFNVSNLALCGMPFLAGFYSKDMILEIVSISNVNMFSFFL 378
Cdd:pfam00361 240 KTMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAG 287
 
Name Accession Description Interval E-value
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
1-562 0e+00

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 694.58  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636   1 MCSISFVNLISMSLSCFLLSLYFLLNDMIYFIEWELVSLNSMSIVMTFLFDWMSLLFMSFVLMISSLVIFYSKEYMMNDN 80
Cdd:MTH00165   3 MCLISFFFLFFLSLILFFLGLYFLLNDYSLFIEWELFSLNSSSIVMTFLFDWMSLLFMSFVLFISSMVIYYSKSYMSGDK 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636  81 HINRFIMLVLMFVLSMMLLIISPNLISILLGWDGLGLVSYCLVIYFQNIKSYNAGMLTALSNRIGDVALLLSIAWMLNYG 160
Cdd:MTH00165  83 NINRFIYLVLLFVLSMMLLIISPNLISILLGWDGLGLVSYCLVIYYQNKKSYNAGMLTALSNRIGDVAILLSIAWMMNFG 162
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 161 SWNYIFYLEIMQNEFEMLMIGSLVMLAAMTKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFNIILSTSWL 240
Cdd:MTH00165 163 SWNFIFYLDFMKNSFEMLLIGLLIMLAAMTKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFNNLLFSSFF 242
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 241 GQLMLLLSGLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGFLKLAMFHLLTHALFKALLFMCAGAIIHNMNNS 320
Cdd:MTH00165 243 SKFLLLISLLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSLGFPKLAFFHLLTHALFKALLFLCAGSIIHNMSNS 322
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 321 QDIRLMGGLSIHMPLTSACFNVSNLALCGMPFLAGFYSKDMILEIVSISNVNMFSFFLYYFSTGLTVSYSFRLVYYSMTG 400
Cdd:MTH00165 323 QDIRFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMVSMSNLNFFIFFLFFFSTGLTVSYSFRLIYYSMSG 402
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 401 DLNCGSLNMLNDESWIMLRGMMGLLIMSIIGGSMLNWLIFPFPYMICLPIYMKLLTLFVCIVGGLFGYLISLSNLFFLNK 480
Cdd:MTH00165 403 DFNLKSLNNLSDESKFMLKSMILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLTLFVILLGGWLGYELSLMSLSYNLK 482
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 481 SLFMYNLSTFLGSMWFMPYISTYGMIFYPLNYGQLVVKSFDQGWSEYFGGQHLYQKLSMYSKTLFLMHNNSLKIYLLLFV 560
Cdd:MTH00165 483 SLKNYKLSSFLGSMWFMPFLSTYGISYYPLNLGSLSLKSFDQGWSEYFGGQGLYNFLKKLSKLIQWLQNNNLKIYLLSFL 562

                 ..
gi 667699636 561 FW 562
Cdd:MTH00165 563 LW 564
ND5 MTH00151
NADH dehydrogenase subunit 5; Provisional
1-561 1.65e-170

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214436 [Multi-domain]  Cd Length: 565  Bit Score: 495.52  E-value: 1.65e-170
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636   1 MCSISFVNLISMSLSCFLLSLYFLLNDMIYFIEWELVSLNSMSIVMTFLFDWMSLLFMSFVLMISSLVIFYSKEYMMNDN 80
Cdd:MTH00151   3 MSSLSSFLLFSYSVFLFPLLGYFGLNGISLIFEWELLSVSSCSFSFELVLDWVSLSFSGVVCLISGCVFLFSSSYMSEDP 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636  81 HINRFIMLVLMFVLSMMLLIISPNLISILLGWDGLGLVSYCLVIYFQNIKSYNAGMLTALSNRIGDVALLLSIAWMLNYG 160
Cdd:MTH00151  83 FLKRFMWLVMLFVLSMNLLIFIPSLPSLLLGWDGLGIVSFALVIYYQNKKSLSAGMLTALTNRIGDVLILLSIALLVLLG 162
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 161 SWNYIFyleiMQNEFEMLMIGSLVMLAAMTKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFNIILSTS-W 239
Cdd:MTH00151 163 HWSILS----MWDFKLSGWLGLLLVLAAMTKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVFLLIRFFPFLSSSsG 238
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 240 LGQLMLLLSGLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGFLKLAMFHLLTHALFKALLFMCAGAIIHNMNN 319
Cdd:MTH00151 239 FSSFLLFISLLTLLMAGISACYENDLKKIIALSTLSQLGVMMFSLGLGMPSLALFHLYTHALFKALLFLCAGSIIHSSSG 318
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 320 SQDIRLMGGLSIHMPLTSACFNVSNLALCGMPFLAGFYSKDMILEIVSISNVNMFSFFLYYFSTGLTVSYSFRLVYYSMT 399
Cdd:MTH00151 319 TQDIRLLGSLFLSLPLTSGCLNISSLSLCGAPFLSGFYSKDLILESSLMSPTSLLMVLLMFVGVGLTALYSARLSFCLVW 398
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 400 GDLNCGSLNMLNDESWIMLRGMMGLLIMSIIGGSMLNWLIFPFPYMICLPIYMKLLTLFVCIVGGLFgyliSLSNLFFLN 479
Cdd:MTH00151 399 GSMKSSSLSSKSDEDFYVSLPMLLLSLGALIGGKLLQSLFEGFSEEFFLPSYLKLLIGFVILLGLFL----SFGFWDSGF 474
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 480 KSLFMYNLSTFLGSMWFMPYISTYGMIFYPLNYGQLVVKSFDQGWSEYFGGQHLYQKLSMYSKTLFLMHNNSLKIYLLLF 559
Cdd:MTH00151 475 SSSKMVKLSFFFSSMWFLSPLSSQPLKSLSLKLSNSSMKSLDMGWLEILGGQGVFKANKSFSVLNESWPVKWFNFFIGLI 554

                 ..
gi 667699636 560 VF 561
Cdd:MTH00151 555 LL 556
ND5 MTH00209
NADH dehydrogenase subunit 5; Provisional
17-561 1.23e-164

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177252 [Multi-domain]  Cd Length: 564  Bit Score: 480.30  E-value: 1.23e-164
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636  17 FLLSLYFLLNDMIYFIEWELVSLNSMSIVMTFLFDWMSLLFMSFVLMISSLVIFYSKEYMMNDNHINRFIMLVLMFVLSM 96
Cdd:MTH00209  17 FLMFVIFMWFQKIVILEWELLSLNSMSISFPLIIDKMSLLFSSVVLLISGSVMWFSTSYMAGEKFKKRFILLVLLFILSM 96
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636  97 MLLIISPNLISILLGWDGLGLVSYCLVIYFQNIKSYNAGMLTALSNRIGDVALLLSIAWMLNYGSWNyIFYLEIMQNEfe 176
Cdd:MTH00209  97 NFLIFVPNLITLLLGWDGLGLVSYLLVIYYQNSKSLSAGMLTALTNRVGDALLILSIAWMLMHGNWN-IFYLNFNSNL-- 173
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 177 MLMIGSLVMLAAMTKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRF-NIILSTSWLGQLMLLLSGLTMFMA 255
Cdd:MTH00209 174 GSVISVLIVLAAMTKSAQIPFSAWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFfPSLFSSPFFSMSLLLLGSLTTLMA 253
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 256 GLGANFEFDLKKIIALSTLSQLGLMMSILSMGFLKLAMFHLLTHALFKALLFMCAGAIIHNMNNSQDIRLMGGLSIHMPL 335
Cdd:MTH00209 254 SMSANVESDLKKIIALSTLSQLGLMMCSLGLNQPELAFFHLITHALFKALLFICAGNIIHSHGHSQDIRMVGNLWYQMPI 333
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 336 TSACFNVSNLALCGMPFLAGFYSKDMILEIVSISNVNMFSFFLYYFSTGLTVSYSFRLVYYSMTGDLNCGSLNMLNDESW 415
Cdd:MTH00209 334 TSICLNIANLSLCGIPFLAGFYSKDLILESMLESNMPIMTLILMFLSTSLTAAYSMRLSYFSLWGPNSSKSLNSSFDQNK 413
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 416 IMLRGMMGLLIMSIIGGSMLNWLIFPFPYMICLPIYMKLLTLFVCIVGGLFGYLISLSNLFFLNKslfmYNLSTFLGSMW 495
Cdd:MTH00209 414 LNLKPMLVLTLGSITGGSVMSWVMVPSVNSVVLPWFLKLLPIMLILFGVLLMYMVLKKNFFLIKG----YKVNYFLSQMW 489
                        490       500       510       520       530       540
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 667699636 496 FMPYISTYGMIFYPLNYGQLVVKSFDQGWSEYFGGQHLYQKLSMYSKTLFLMHNNSLKIYLLLFVF 561
Cdd:MTH00209 490 FLPDLSSQPVNKFTMKLSKTMLKLLDQGWVEKMSGQGSFKVLKKSSKLSQIIQNNSLKLFVTFMML 555
ND5 MTH00207
NADH dehydrogenase subunit 5; Provisional
9-558 2.42e-160

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 164753 [Multi-domain]  Cd Length: 572  Bit Score: 469.63  E-value: 2.42e-160
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636   9 LISMSLSCFLLSLYFLLNDMIYFIEWELVSLNSMSIVMTFLFDWMSLLFMSFVLMISSLVIFYSKEYMMNDNHINRFIML 88
Cdd:MTH00207  14 LWFMSILMFPLSLYLMMCNKTILIEWEIFTISSSPINFTIILDPTGTLFSSTVLFISANVLLFAKTYMQEDKFLSRFISL 93
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636  89 VLMFVLSMMLLIISPNLISILLGWDGLGLVSYCLVIYFQNIKSYNAGMLTALSNRIGDVALLLSIAWMLNYGSWNYIFYL 168
Cdd:MTH00207  94 VLLFVLSMNMLIFFPHLMILLLGWDGLGLVSFILVIYYQNPKSLGAGMITALTNRIGDVMLLLSIGWTLNQGHWSITNMW 173
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 169 EIMQNEFEMLMIgslvMLAAMTKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRF-NIILSTSWLGQLMLLL 247
Cdd:MTH00207 174 QTDMNNYIALSI----MIAAMTKSAQMPFSSWLPAAMAAPTPVSALVHSSTLVTAGVFLLIRFyPFLSSTYWFNPALLLT 249
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 248 SGLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGFLKLAMFHLLTHALFKALLFMCAGAIIHNMNNSQDIRLMG 327
Cdd:MTH00207 250 ASLTMLMAGLSAMTECDMKKIIALSTLSQLGVMMASLGLGMPKLALFHLITHALFKALLFVCAGSLIHSHHHSQDLRTMG 329
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 328 GLSIHMPLTSACFNVSNLALCGMPFLAGFYSKDMILEIVSISNVNMFSFFLYYFSTGLTVSYSFRLVYYSMTGDLNCGSL 407
Cdd:MTH00207 330 NLTNQMPLTTSCLLIANLALCGSPFLSGFYSKDLILESSLFYPHNSLMILMIFLATALTAAYSTRFTLAVLWSPNSSSPY 409
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 408 NMLNDESWIMLRGMMGLLIMSIIGGSMLNWLIFPFPYMICLPIYMKLLTLFVCIVGGLFGYLISLSNLFFLNKSLFMYNL 487
Cdd:MTH00207 410 HHLEDEDKSLTTPMLLLTLGAITSGSALNWWLPTPQEEPILPLQYKLLPLLVVTLGALLAWLFTTPNITKTPLLINNPLS 489
                        490       500       510       520       530       540       550
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 667699636 488 STFLGSMWFMPYISTYGMIFYPLNYGQLVVKSFDQGWSEYFGGQHLYQKLSMYSKTLFLMHNNSLKIYLLL 558
Cdd:MTH00207 490 HFASCLMWFLVPLSSQFIMSTPMNLSHNYLKLLDQGWLEMLGAQGTFKMFSRSSNNVMKLQKNIPNNYLMM 560
ND5 MTH00211
NADH dehydrogenase subunit 5; Provisional
10-561 1.21e-115

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214459 [Multi-domain]  Cd Length: 597  Bit Score: 355.80  E-value: 1.21e-115
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636  10 ISMSLSCFLLSLYFLLNDMIYFIEWELVSLNSMSIVMTFLFDWMSLLFMSFVLMISSLVIFYSKEYMMNDNHINRFIMLV 89
Cdd:MTH00211  37 LSFFISLIPLLIFLDQGLETILTNWSWINLGLFSLNLSFKFDFYSIFFTSVALYVTWSILEFSLWYMSSEPNINRFFKYL 116
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636  90 LMFVLSMMLLIISPNLISILLGWDGLGLVSYCLVIYFQNIKSYNAGMLTAL-SNRIGDVALLLSIAWML-NYGSWNYIFY 167
Cdd:MTH00211 117 LLFLIFMLILVSANNLFQLFIGWEGVGIMSFLLISWWYGRSDANTAALQAViYNRIGDIGLLLSMVWLLlNLNSWEISQL 196
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 168 LEIMQNEFEMLMigsLVMLAAMTKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFNIILSTSWL-GQLMLL 246
Cdd:MTH00211 197 FILNLDLTLFLL---GLLLAAMGKSAQFGFHPWLPSAMEGPTPVSALLHSSTMVVAGVFLLIRLSPLFQNNQLiLGAVLL 273
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 247 LSGLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGFLKLAMFHLLTHALFKALLFMCAGAIIHNMNNSQDIRLM 326
Cdd:MTH00211 274 LGALTMLFGALCALTQNDIKKIVAFSTTSQLGLMMVTLGLNQPQLAFLHICTHAFFKAMLFMCSGSIIHGLNNEQDIRKM 353
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 327 GGLSIHMPLTSACFNVSNLALCGMPFLAGFYSKDMILEIVSISNVNMFSFFLYYFSTGLTVSYSFRLVYYSMTGDLNCGS 406
Cdd:MTH00211 354 GGLSKNLPFTSSCLFLGSLALMGFPFLSGFFSKDLILESMNGSYLNAWALLLTLLATSLTAAYSFRLIFLSLGGYPRFLS 433
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 407 LNMLNDESWIMLRGMMGLLIMSIIGGSMLNWLIFPFPYMI-CLPIYMKLLTLFVCIVGGLFGYLislsnLFFLNKSLFMY 485
Cdd:MTH00211 434 LSPINENYKLLKNPLKRLALGSILAGFIITSNLPPEKPEIlSLPFLLKLMPLLVTIVGLLLGLE-----LVNLTHKQLKT 508
                        490       500       510       520       530       540       550
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 667699636 486 NLSTFLGSMWFMPYISTYGMIFYPLNYGQ-LVVKSFDQGWSEYFGGQHLYQKLSMYSKTLFLMHNNSLKIYLLLFVF 561
Cdd:MTH00211 509 STLSFSNMLGYYPPIIHRLLPKLSLKWGQtLSTHLMDLGWYEKLGPKGLGVNQKKLIKLVTSPQQGLIKSYLALLLL 585
ND5 MTH00004
NADH dehydrogenase subunit 5; Validated
17-559 7.66e-107

NADH dehydrogenase subunit 5; Validated


Pssm-ID: 214398 [Multi-domain]  Cd Length: 602  Bit Score: 332.90  E-value: 7.66e-107
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636  17 FLLSL----YFLLNDMIYFI-EWELVSLNSMSIVMTFLFDWMSLLFMSFVLMISSLVIFYSKEYMMNDNHINRFIMLVLM 91
Cdd:MTH00004  44 FLISLipltLFLNSGTESITtNWPWIFTTTFNIPISFKLDQYSLMFLPIALFVTWSILEFSTWYMASDPHITKFFKYLLI 123
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636  92 FVLSMMLLIISPNLISILLGWDGLGLVSYCLVIYFQNIKSYNAGMLTA-LSNRIGDVALLLSIAWM-LNYGSWNyIFYLE 169
Cdd:MTH00004 124 FLIAMLILITANNMFQLFIGWEGVGIMSFLLIGWWSGRAEANTAALQAiIYNRIGDIGLILSMAWLaMTLNTWE-IQQLF 202
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 170 IMQNEFEMLMIGslVMLAAMTKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFNIILSTSwlgQLM----L 245
Cdd:MTH00004 203 SPTQTPTLPLLG--LILAATGKSAQFGLHPWLPAAMEGPTPVSALLHSSTMVVAGIFLLIRTHPLLQNN---QTAlticL 277
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 246 LLSGLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGFLKLAMFHLLTHALFKALLFMCAGAIIHNMNNSQDIRL 325
Cdd:MTH00004 278 CLGALTTLFAATCALTQNDIKKIIAFSTSSQLGLMMVTIGLNQPQLAFLHISTHAFFKAMLFLCSGSIIHNLNNEQDIRK 357
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 326 MGGLSIHMPLTSACFNVSNLALCGMPFLAGFYSKDMILEIVSISNVNMFSFFLYYFSTGLTVSYSFRLVYYSMTGDLNCG 405
Cdd:MTH00004 358 MGGLQKTLPITSSCLTIGNLALMGTPFLSGFYSKDTIIETLNTSYLNAWALLLTLLATSFTAAYSLRMILLVQTGFPRTP 437
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 406 SLNMLNDESWIMLRGMMGLLIMSIIGGSMLNWLIFPF-PYMICLPIYMKLLTLFVCIVGGLFGY-LISLSNLFFLNKSLF 483
Cdd:MTH00004 438 PTTPINENTPTIINPITRLALGSILAGLLISSTILPTkTPPMTMPTTTKLAALIVTILGILLALeLSNMTTTLTPPKQNT 517
                        490       500       510       520       530       540       550
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 667699636 484 MYNLSTFLGSMWFMPYISTYGMIfypLNYGQLVVKSF-DQGWSEYFGGQHLYQKLSMYSKTLFLMHNNSLKIYLLLF 559
Cdd:MTH00004 518 LHNFSNQLAFFNPLTHRLLPMTL---LKSSQKIATHLiDLSWLEKMGPKGLANLQLTASKTLTTLQKGLIKNYLTSF 591
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
9-470 7.65e-104

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 325.57  E-value: 7.65e-104
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636   9 LISMSLSCFLLSLYFL---LNDMIYFIEWELVSLNSMSIVMTFLFDWMSLLFMSFVLMISSLVIFYSKEYMMNDNHINRF 85
Cdd:COG1009   34 AALAPLAAFVLSLLLFpavLGGEVVVELYTWIPVGSLGLDFGFRLDGLSLLMLLLVTGVGLLVHIYSIGYMSGDPGLARF 113
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636  86 IMLVLMFVLSMMLLIISPNLISILLGWDGLGLVSYCLV-IYFQNIKSYNAGMLTALSNRIGDVALLLSIAWMLNY-GSWN 163
Cdd:COG1009  114 FAYLLLFMAAMLGLVLSDNLLLLFVFWELVGLCSYLLIgFWYEKPSARRAARKAFLVTRVGDLGLLLGILLLGAIaGTLN 193
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 164 Y--IF-YLEIMQNEFEMLMIGSLVMLAAMTKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFNIILS-TSW 239
Cdd:COG1009  194 FseLLaAAPTILSSPLLTLILLLLLLGAFGKSAQFPLHFWLPDAMEGPTPVSALLHAATMVKAGVYLLARLSPLFAlSPV 273
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 240 LGQLMLLLSGLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGFLKLAMFHLLTHALFKALLFMCAGAIIHNMnN 319
Cdd:COG1009  274 WLTVVAIIGAITALFAALIALAQTDIKRVLAYSTVSQLGYMFLALGVGAYVAALFHLLTHAFFKALLFLGAGSVIHAT-G 352
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 320 SQDIRLMGGLSIHMPLTSACFNVSNLALCGMPFLAGFYSKDMILE-IVSISNVNMFSFFLYYFSTGLTVSYSFRLVYYSM 398
Cdd:COG1009  353 TRDIRKMGGLRKKMPITAITFLIGALSLAGIPPFAGFFSKEAILEaALEAGGLGPLLLAVALLGAFLTAFYSFRLFFLVF 432
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 399 TGDLNCGSLNMLNDESWIMLRGMMGLLIMSIIGGSMLNWL---------IFPFPYMICLPIYMKLLTLFVCIVGGLFGYL 469
Cdd:COG1009  433 FGKPRPKTPKHPHESPWLMTLPLVVLAVLSLVLGLLLPGLlegllapaaVLGGELHLAHGLLLNALPLLLSLLGIALGYL 512

                 .
gi 667699636 470 I 470
Cdd:COG1009  513 L 513
ND5 MTH00208
NADH dehydrogenase subunit 5; Provisional
14-559 2.26e-100

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177251 [Multi-domain]  Cd Length: 628  Bit Score: 316.91  E-value: 2.26e-100
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636  14 LSCFLLSLYFLLN-DMIYFIEWELVSLNSMSIVMTFLFDWMSLLFMSFVLMISSLVIFYSKEYMMNDNHINRFIMLVLMF 92
Cdd:MTH00208  68 LSLINLLIWILLGcPNINISLSNWLSNTLFNFSLSFIFDFYFILFFSVALFVTWSIIEFSHYYMSNDPNKNAFFRLLIIF 147
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636  93 VLSMMLLIISPNLISILLGWDGLGLVSYCLVIYFQNIKSYNAGMLTA-LSNRIGDVALLLSIAW-MLNYGSWNY--IFYL 168
Cdd:MTH00208 148 LLNMLILTSSNNLFLLFIGWEGVGFLSFLLISWWTTRNDANSSALQAvIYNRIGDIGIILFLSLsLINFNSWNLneILSL 227
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 169 EIMQNEFEMLMIGSLVmLAAMTKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRF-NIILSTSWLGQLMLLL 247
Cdd:MTH00208 228 NNSNSFLINILLFGIL-LAAAGKSAQFGLHPWLPAAMEGPTPVSALLHSSTMVVAGVFLLIRTsPLISNSPWFLSLCLIL 306
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 248 SGLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGFLKLAMFHLLTHALFKALLFMCAGAIIHNMNNSQDIRLMG 327
Cdd:MTH00208 307 GSLTALFAASTAISQHDIKKIIAYSTTSQLGLMVVAIGLNQPNLALFHICTHAFFKAMLFLCSGSIIHSLNNEQDLRKMG 386
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 328 GLSIHMPLTSACFNVSNLALCGMPFLAGFYSKDMILEIVSISNVNMFSFFLYYFSTGLTVSYSFRLVYYSMTGDLNCGSL 407
Cdd:MTH00208 387 GLSFLLPVTSSCIILGSLALMGTPFLAGFYSKDLILEAGLASISNLLSIILALIATLLTAVYSFRIIFFCFLNNPSFSPL 466
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 408 NMLNDESWIMLRGMMGLLIMSIIGGSMLNWLIFPFPyMICLPIYMKLLTLFVCIVGGLFgyliSLSNLFFLNKSLFMYNL 487
Cdd:MTH00208 467 SPISEENPNLTNPLLRLAIGTIISGWFFSNFVFNLP-PLTLPLILKSLPLIVTIIGAAF----SFSFLLSLSSNPINSNF 541
                        490       500       510       520       530       540       550
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 667699636 488 STFLGSMWFMPYISTYGMIFYPLNYG-QLVVKSFDQGWSEYFGGQHLYQKLSMYSKTLFLMHNNSLKIYLLLF 559
Cdd:MTH00208 542 FSFLSNQWFFVNISHSIIISFSFFTSlFGSTRTLDRGWSENIGPQGIGNTSSTLSKSYQLTQTGYIKQYLLSS 614
ND5 MTH00066
NADH dehydrogenase subunit 5; Provisional
34-561 7.47e-100

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214416 [Multi-domain]  Cd Length: 598  Bit Score: 314.92  E-value: 7.47e-100
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636  34 WELVSLNSMSIVMTFLFDWMSLLFMSFVLMISSLVIFYSKEYMMNDNHINRFIMLVLMFVLSMMLLIISPNLISILLGWD 113
Cdd:MTH00066  64 FHWMNIFNFNINSSFKFDQYSIIFLPIALFVTWSILEFAIWYMHSDPKINRFFKYLLIFLIAMMILVTANNLFQLFIGWE 143
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 114 GLGLVSYCLV-IYFQNIKSYNAGMLTALSNRIGDVALLLSIAW-MLNYGSW--NYIFyleiMQNEFEMLMIGSLVmLAAM 189
Cdd:MTH00066 144 GVGIMSFLLIgWWHARADANTAALQAVLYNRVGDIGLILSMAWlAMNTNSWelQQIF----LLNDNSTLPLLGLI-LAAA 218
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 190 TKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFNIILSTSWLGQLM-LLLSGLTMFMAGLGANFEFDLKKI 268
Cdd:MTH00066 219 GKSAQFGLHPWLPAAMEGPTPVSALLHSSTMVVAGIFLLIRFHPLLENNQTALTIcLCLGALTTLFTAACALTQNDIKKI 298
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 269 IALSTLSQLGLMMSILSMGFLKLAMFHLLTHALFKALLFMCAGAIIHNMNNSQDIRLMGGLSIHMPLTSACFNVSNLALC 348
Cdd:MTH00066 299 VAFSTSSQLGLMMVTIGLNQPQLAFFHICTHAFFKAMLFLCSGSIIHSLNDEQDIRKMGGLQKALPITTSCLTIGSLALT 378
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 349 GMPFLAGFYSKDMILEIVSISNVNMFSFFLYYFSTGLTVSYSFRLVYYSMTGDLNCGSLNMLNDESWIMLRGMMGLLIMS 428
Cdd:MTH00066 379 GTPFLAGFFSKDAIIEAMNTSNLNSWALILTLIATSFTAVYSFRIIYFSSMKFPRSLPLSPINENNPLIINPIKRLAWGS 458
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 429 IIGGSMLNWLIFP-FPYMICLPIYMKLLTLFVCIVgglfGYLISLSNLFFLNKSLFMYNLSTFLGSMWFMPYISTYGMIF 507
Cdd:MTH00066 459 IIAGLLIIFNILPmKPQILTMPTFMKLAALLVTLL----GLLIALDLAKITSKTTPKTKMHSFSNLLAFFPTIIHRLSPK 534
                        490       500       510       520       530
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 667699636 508 YPLNYGQ-LVVKSFDQGWSEYFGGQHLYQKLSMYSKTLFLMHNNSLKIYLLLFVF 561
Cdd:MTH00066 535 TNLNSGQnIATHLTDMTWYEKSGPKGLTNQQLPPIKTITNIQTGLIKTYLTLFLI 589
NDH_I_L TIGR01974
proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th ...
9-481 2.18e-94

proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th (based on E. coli) structural gene, L, of bacterial NADH dehydrogenase I, as well as chain 5 of the corresponding mitochondrial complex I and subunit 5 (or F) of the chloroplast NAD(P)H-plastoquinone dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273905 [Multi-domain]  Cd Length: 609  Bit Score: 300.74  E-value: 2.18e-94
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636    9 LISMSLSCFLLSLYFLLNDMIYFIE--WELVSLNSMSIVMTFLFDWMSLLFMSFVLMISSLVIFYSKEYMMNDNHINRFI 86
Cdd:TIGR01974  38 GLSAALSAFVFVDFFLNGEGEAFTQslFPWISVGGFQVDFGLRLDGLSLTMLVVVTGVGSLVHIYSIGYMAHDEGYSRFF 117
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636   87 MLVLMFVLSMMLLIISPNLISILLGWDGLGLVSYCLV-IYFQNIKSYNAGMLTALSNRIGDVALLLSIAWMLNY-GSWNY 164
Cdd:TIGR01974 118 AYLNLFTFSMLMLVLADNFLQLFFGWEGVGLCSYLLIgFWYKKPSANNAAIKAFVVNRVGDFGLLLGIFLIFWYfGTLNF 197
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636  165 --IFYLEImQNEFEMLMIGSLVML-AAMTKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFN-IILSTSWL 240
Cdd:TIGR01974 198 qeVFALAP-GAFFSALTLICLLLFiGAMGKSAQLPLHTWLPDAMEGPTPVSALIHAATMVTAGVYLVARTSpLFELSPTA 276
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636  241 GQLMLLLSGLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGFLKLAMFHLLTHALFKALLFMCAGAIIHNMNNS 320
Cdd:TIGR01974 277 LYLVTIIGAITALFAATVALVQNDIKRILAYSTMSQLGYMFLALGVGAYAAAIFHLMTHAFFKALLFLGAGSVIHAMHHE 356
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636  321 QDIRLMGGLSIHMPLTSACFNVSNLALCGMPFLAGFYSKDMILEIVSISNVNMFSFFLYYFSTGLTVSYSFRLVYYSMTG 400
Cdd:TIGR01974 357 QDIRKMGGLRKKMPVTYITFLIGSLALIGFPGFAGFFSKDLILEAAFASGTHSFLFVAGLIGAFLTAFYSFRLIFMVFHG 436
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636  401 DLNCGSLNMLNDESWIMLRGMMGLLIMSIIGGSMLNWLIFPFPYMI-----------CLPIYMKLLTLFVCIVGGLFGYL 469
Cdd:TIGR01974 437 KERHEADAHPHESPLVMLLPLIVLAVGSVFAGFFIVPLFEFLKGVLptsaepalehhHVPALEIWSPTAVAILGILLAYL 516
                         490
                  ....*....|..
gi 667699636  470 ISLSNLFFLNKS 481
Cdd:TIGR01974 517 LYLGNPTLPAKI 528
ND5 MTH00108
NADH dehydrogenase subunit 5; Provisional
3-492 1.42e-93

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177170 [Multi-domain]  Cd Length: 602  Bit Score: 298.69  E-value: 1.42e-93
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636   3 SISFVNLISMSLSC-FLLSL-----YFLLNDMIYFIEWELVSLNSMSIVMTFLFDWMSLLFMSFVLMISSLVIFYSKEYM 76
Cdd:MTH00108  29 TNNYPLYVKTTISYaFIISLiptmmFIHSGQEMIISNWHWMTIQTLKLSLSFKLDYFSMIFIPVALFVTWSIMEFSMWYM 108
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636  77 MNDNHINRFIMLVLMFVLSMMLLIISPNLISILLGWDGLGLVSYCLVIYFQNIKSYNAGMLTA-LSNRIGDVALLLSIAW 155
Cdd:MTH00108 109 HSDPNINRFFKYLLLFLITMLILVTANNLFQLFIGWEGVGIMSFLLIGWWYGRTDANTAALQAiLYNRIGDIGFILAMAW 188
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 156 -MLNYGSWNY--IFYLEimQNEFEMLMIGSLvmLAAMTKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFN 232
Cdd:MTH00108 189 fLLNLNSWDLqqIFMLN--PNNSNLPLMGLL--LAATGKSAQFGLHPWLPSAMEGPTPVSALLHSSTMVVAGVFLLIRFH 264
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 233 IILSTSWLGQ-LMLLLSGLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGFLKLAMFHLLTHALFKALLFMCAG 311
Cdd:MTH00108 265 PLMENNKTIQtLTLCLGAITTLFTAICALTQNDIKKIVAFSTSSQLGLMMVTIGINQPHLAFLHICTHAFFKAMLFMCSG 344
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 312 AIIHNMNNSQDIRLMGGLSIHMPLTSACFNVSNLALCGMPFLAGFYSKDMILEIVSISNVNMFSFFLYYFSTGLTVSYSF 391
Cdd:MTH00108 345 SIIHNLNDEQDIRKMGGLFKTLPFTSTALIIGSLALTGMPFLTGFYSKDLIIEAANTSYTNAWALLITLIATSLTAAYST 424
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 392 RLVYYSMTGDLNCGSLNMLNDESWIMLRGMMGLLIMSIIGGSMLNWLIFPF--PYMIcLPIYMKLLTLFVCIVGGLFGY- 468
Cdd:MTH00108 425 RIIFFALLGQPRFPPLITINENNPLLINPIKRLLLGSIFAGFLISNNIPPTtiPQMT-MPLYLKLTALAVTILGFILALe 503
                        490       500
                 ....*....|....*....|....
gi 667699636 469 LISLSNLFFLNKSLFMYNLSTFLG 492
Cdd:MTH00108 504 LNLLTNNLKFKYPSNTFKFSNMLG 527
PRK06590 PRK06590
NADH:ubiquinone oxidoreductase subunit L; Reviewed
9-470 2.45e-89

NADH:ubiquinone oxidoreductase subunit L; Reviewed


Pssm-ID: 235836 [Multi-domain]  Cd Length: 624  Bit Score: 288.21  E-value: 2.45e-89
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636   9 LISMSLSCFLLSLYFLLNDMIYFIE-WELVSLNSMSIVMTFLFDWMSLLFMSFVLMISSLVIFYSKEYMMNDNHINRFIM 87
Cdd:PRK06590  40 GLSALLSLVVFFDFLLGGGRAFSQTlWTWISVGDFDVDFGLRVDGLSATMLVVVTGVSFLVHIYSIGYMAHDEGYRRFFA 119
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636  88 LVLMFVLSMMLLIISPNLISILLGWDGLGLVSYCLV-IYFQNIKSYNAGMLTALSNRIGDVALLLSIAWMLNY-GSWNY- 164
Cdd:PRK06590 120 YLNLFTFSMLMLVLSDNLLQLFFGWEGVGLCSYLLIgFWYKKPSAGAAAMKAFIVNRVGDVGLALGIFLLFAEfGSLNYd 199
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 165 -IFYLEIMQNEFEMLM---IGSLVMLAAMTKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFNIILSTSWL 240
Cdd:PRK06590 200 eVFAAAPQFFGLGWSAltlICLLLFIGAMGKSAQFPLHTWLPDAMEGPTPVSALIHAATMVTAGVYLVARMSPLFELSPE 279
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 241 GQLM-LLLSGLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGFLKLAMFHLLTHALFKALLFMCAGAIIHNMNN 319
Cdd:PRK06590 280 ALLFvAIVGAVTALFAAFIGLVQTDIKRVLAYSTMSQLGYMFLALGVGAYAAAIFHLMTHAFFKALLFLGAGSVIHAMHH 359
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 320 SQDIRLMGGLSIHMPLTSACFNVSNLALCGMPFLAGFYSKDMILEiVSISNVNMFSFFLYYFSTGLTVSYSFRLVYYSMT 399
Cdd:PRK06590 360 EQDIRKMGGLRKKMPVTYATFLIGTLALIGIPPFAGFFSKDEILE-AAFANGHINLFVAGLVGAFLTAFYSFRLIFLVFH 438
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 400 GDlNCGSLNMLNDESWIMLRGMMGLLIMSIIGG-----SMLNWLIFPFPY-----MICLPIYMKLLTLFVCIVGGLFGYL 469
Cdd:PRK06590 439 GK-EKEKIHHPHESPAVMTLPLIVLAVLSVFAGalivpPFLGVLPLTTELahgeaEHHLPVWVALLPLVVALAGIALAWL 517

                 .
gi 667699636 470 I 470
Cdd:PRK06590 518 L 518
ND5 MTH00137
NADH dehydrogenase subunit 5; Provisional
34-561 9.85e-82

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214428 [Multi-domain]  Cd Length: 611  Bit Score: 267.85  E-value: 9.85e-82
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636  34 WELVSLNSMSIVMTFLFDWMSLLFMSFVLMISSLVIFYSKEYMMNDNHINRFIMLVLMFVLSMMLLIISPNLISILLGWD 113
Cdd:MTH00137  70 WNWMNTLTFDINISFKFDHYSIIFTPIALYVTWSILEFASWYMHADPNMNRFFKYLLIFLIAMIILVTANNMFQLFIGWE 149
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 114 GLGLVSYCLVIYFQNIKSYNAGMLTA-LSNRIGDVALLLSIAWML-NYGSWNY--IFYLeimQNEFEMLMIGSLVMLAAM 189
Cdd:MTH00137 150 GVGIMSFLLIGWWYGRADANTAALQAvIYNRVGDIGLILAMAWMAtNLNSWEIqqIFAL---SKDFDLTLPLLGLILAAT 226
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 190 TKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRF-------NIILSTS-WLGQLMlllsglTMFMA--GLGA 259
Cdd:MTH00137 227 GKSAQFGLHPWLPSAMEGPTPVSALLHSSTMVVAGIFLLIRLsplmennQTALTTClCLGALT------TLFTAtcALTQ 300
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 260 NfefDLKKIIALSTLSQLGLMMSILSMGFLKLAMFHLLTHALFKALLFMCAGAIIHNMNNSQDIRLMGGLSIHMPLTSAC 339
Cdd:MTH00137 301 N---DIKKIVAFSTSSQLGLMMVTIGLNQPQLAFLHICTHAFFKAMLFLCSGSIIHSLNDEQDIRKMGGLHHLTPFTSSC 377
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 340 FNVSNLALCGMPFLAGFYSKDMILEIVSISNVNMFSFFLYYFSTGLTVSYSFRLVYYSMTGDLNCGSLNMLNDESWIMLR 419
Cdd:MTH00137 378 LTIGSLALTGTPFLAGFFSKDAIIEALNTSHLNAWALTLTLIATSFTAVYSLRVVFFVSMGHPRFNPLSPINENNPAVIN 457
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 420 GMMGLLIMSIIGGSMLNWLIFPF--PYMiCLPIYMKLLTLFVCIVGGLFGY-LISLSN-LFFLNKSLFMYNLSTFLGsmw 495
Cdd:MTH00137 458 PIKRLAWGSIIAGLLITSNILPLktPVM-TMPPLLKLAALIVTILGLLIALeLASLTNkQFKPTPTLPPHHFSNMLG--- 533
                        490       500       510       520       530       540
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 667699636 496 FMPYISTYGMIFYPLNYGQLVV-KSFDQGWSEYFGGQHLYQKLSMYSKTLFLMHNNSLKIYLLLFVF 561
Cdd:MTH00137 534 FFPAIIHRLTPKLNLTLGQTIAtQMVDQTWLEKTGPKGIASLQLPLITTTSNIQQGMIKTYLTLFLL 600
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
5-503 9.10e-81

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 265.02  E-value: 9.10e-81
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636   5 SFVNLISMSLSCFLLSLYFLLNDMIYFIEWELVSLNSMSIVMTFLFDWMSLLFMSFVLMISSLVIFYSKEYMMNDNHINR 84
Cdd:MTH00020  33 SSCLIISLSWSFLIFYEILFNSSTTYIKLWRWLDSDLLTVYFGLQFDGLVAIMLLVVTTVSTLVHIFSTAYMRGDPHIPR 112
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636  85 FIMLVLMFVLSMMLLIISPNLISILLGWDGLGLVSYCLV-IYFQNIKSYNAGMLTALSNRIGDVALLLSIAWMLN-YGSW 162
Cdd:MTH00020 113 FMSYLSLFTFLMVVLVTSDNYLQLFIGWEGVGLCSYLLInFWLTRIEANKAAIKAMLVNRVGDIGLLLAMFLLWDrFGSL 192
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 163 NY--IFYLEIMQNEFEMLMIGSLVMLAAMTKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFNIILSTSWL 240
Cdd:MTH00020 193 DFssVFNMVVSAPSSDITLICLFLFIGAVGKSAQLGLHTWLPDAMEGPTPVSALIHAATMVTAGVFLLIRSSPLFEQAPL 272
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 241 GQLMLLLSG-LTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGFLKLAMFHLLTHALFKALLFMCAGAIIHNMNN 319
Cdd:MTH00020 273 ALIIVTIVGsLTVFFAATVGLVQNDLKKVIAYSTCSQLGYMVVACGLSHYSISLFHLMNHAFFKALLFLSAGSVIHALSD 352
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 320 SQDIRLMGGLSIHMPLTSACFNVSNLALCGMPFLAGFYSKDMILEIVSISNVNMFSFFLYYFSTGLTVSYSFRLVYYSMT 399
Cdd:MTH00020 353 EQDMRKMGGLISFLPLTYIFFLIGSLSLMGFPYLTGFYSKDLILELAFGQYYLIFAYWLGCFSALLTAFYSIRLIYLTFL 432
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 400 GDLNC--GSLNMLNDESWIMLRGMMGLLIMSIIGGSMLNWLIFPFPYMI--CLPIYMKLLTLFVCIVGGLFGYLI--SLS 473
Cdd:MTH00020 433 SNTNLkkAVFFHLHEGDWNLLLPLGILALGSIFVGYLAKEMIWSFQITLppIVPLSIKLLPVFLSLGGIGLVIILyfYSS 512
                        490       500       510
                 ....*....|....*....|....*....|
gi 667699636 474 NLFFLNKSLFMYNLSTFLGSMWFMPYISTY 503
Cdd:MTH00020 513 KTFRVPFSFIGRNSYTFLGSAWQFNYILNY 542
ND5 MTH00210
NADH dehydrogenase subunit 5; Provisional
10-529 1.14e-74

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177253 [Multi-domain]  Cd Length: 616  Bit Score: 249.15  E-value: 1.14e-74
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636  10 ISMSLSCFLLSLYFLLNDMIYFIEWELVSLNSMSIVMTFLFDWMSLLFMSFVLMISSLVIFYSKEYMMNDNHINRFIMLV 89
Cdd:MTH00210  38 ISAIVSCCIFYETTLNGSATYIKLWRWFDSELLTTYFGLQFDSLTSTMLIVITSVSALVHIYSTGYMSGDPHIPRFMSYL 117
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636  90 LMFVLSMMLLIISPNLISILLGWDGLGLVSYCLV-IYFQNIKSYNAGMLTALSNRIGDVALLLSIAWMLN-YGSWNY-IF 166
Cdd:MTH00210 118 SLFTFLMIVLVTSDNYVQLFIGWEGVGLCSYLLInFWLTRIKANKAAIKAMLINRVGDIGLVLAMIMILKeFGTLEFsTI 197
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 167 Y--LEIMQNEFEMLMIGSLVMLAAMTKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFNIILSTSWLG-QL 243
Cdd:MTH00210 198 SslLVTNINKESLTIICLLLFIGAVGKSAQLGLHTWLPDAMEGPTPVSALIHAATMVTAGVFLIIRSGPLFEGSPLAlTI 277
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 244 MLLLSGLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGFLKLAMFHLLTHALFKALLFMCAGAIIHNMNNSQDI 323
Cdd:MTH00210 278 VTILGALTAFFAATVGVVQNDLKKVIAYSTCSQLGYMVMVCGISNYSTSLFHLMNHAFFKALLFLSAGSVIHAVSDEQDM 357
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 324 RLMGGLSIHMPLTSACFNVSNLALCGMPFLAGFYSKDMILEIVSISNVNMFSFFLYYFSTGLTVSYSFRLVYYSMTGDLN 403
Cdd:MTH00210 358 RKMGGLIKSIPFTYVMILIGSLSLMGFPYLTGFYSKDLILELTYDKYYIAFAYWLGSFSALLTAFYSIRLIYLTFITNTN 437
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 404 CGSLNMLN--DESWIMLRGMMGLLIMSIIGGSMLNWLIFPFPYMICLPIYMKLLTLFVCIVGGLFGYLISLSNLFFLNKS 481
Cdd:MTH00210 438 SKKEVFIGvhESSWNITFPLLLLAFGSIFVGYLGKEVVLSNVIPPIVPNSIKMIPLLFSLLGALLAFVIYNSMVFLIKIS 517
                        490       500       510       520       530
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 667699636 482 ------LFMYNLSTFLGSMWFMPYISTYGMIFYPLNYGQLVV-KSFDQGWSEYFG 529
Cdd:MTH00210 518 rrgvsiRLYHVIYTFLNSAWQFNYVINHFIVKNIWKFGHLITyRIIDRGLLEIIG 572
PRK07376 PRK07376
NADH-quinone oxidoreductase subunit L;
32-401 6.15e-65

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236005 [Multi-domain]  Cd Length: 673  Bit Score: 224.52  E-value: 6.15e-65
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636  32 IEWelVSLNSMSIVMTFLFDWMSLLFMSFVLMISSLVIFYSKEYMMNDNHINRFIMLVLMFVLSMMLLIISPNLISILLG 111
Cdd:PRK07376  73 FEW--ASAGDFHLPMGYVIDPLGAVMLVLVTTVALLVMIYSDGYMAHDPGYVRFFAYLSLFSSSMLGLVISPNLVQIYVF 150
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 112 WDGLGLVSYCLVIYFQNIKSY-NAGMLTALSNRIGDVALLLSIA---WMLNYgswnyiFYLEIMQNEFEMLM-------- 179
Cdd:PRK07376 151 WELVGMCSYLLVGFWYDRKGAaDAAQKAFVVNRVGDFGLLLGILglfWATGS------FDFDGIADRLSELVssgavsgw 224
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 180 ----IGSLVMLAAMTKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFNIILSTswLGQLMLLLSGLTMFMA 255
Cdd:PRK07376 225 lallLCILVFLGPMAKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGVFLVARMYPVFEQ--FPAVMTVIAWTGAITA 302
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 256 GLGANF---EFDLKKIIALSTLSQLGLMMSILSMGFLKLAMFHLLTHALFKALLFMCAGAIIHNMNN--------SQDIR 324
Cdd:PRK07376 303 FLGASIaltQNDIKKGLAYSTISQLGYMVMAMGCGAYSAGLFHLMTHAYFKAMLFLGSGSVIHGMEEvvghdpvlAQDMR 382
                        330       340       350       360       370       380       390
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 667699636 325 LMGGLSIHMPLTSACFNVSNLALCGMPFLAGFYSKDMILEIVSISNVNMfsFFLYYFSTGLTVSYSFRLVYYSMTGD 401
Cdd:PRK07376 383 LMGGLRKYMPITAITFLIGCLAISGIPPFAGFWSKDEILGAAFEANPAL--WFVGFLTAGMTAFYMFRMYFLTFEGE 457
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
4-531 5.89e-63

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 219.06  E-value: 5.89e-63
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636   4 ISFVNLISMSLSCFLLSLYFLLNDMIYFIE-WELVSLNSMSIVMTFLFDWMSLLFMSFVLMISSLVIFYSKEYMMNDNHI 82
Cdd:MTH00032  31 LSTICMGSSTLIALFLAYEVLINDAVVHIElYKWIESEIFITHIGLLYDTLSVTMLLVISSISTLVHIYSTSYMSDDPHV 110
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636  83 NRFIMLVLMFVLSMMLLIISPNLISILLGWDGLGLVSYCLVIYFQN-IKSYNAGMLTALSNRIGDVALLLSIAWM----- 156
Cdd:MTH00032 111 PRFLCYLSLFTFLMMVLVTSDNYLQLFIGWEGVGVCSYLLVAFWTTrIQANKAAIKAIVVNRVGDVGVILGMVLIyktig 190
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 157 -LNYGSWNYIFYLE-IMQNEFE-----------MLMIGSLVMLAAMTKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTA 223
Cdd:MTH00032 191 sLDFLTFNGGSVGSgIMDRGYYgggayesplapFAIIGILLLIGCIGKSAQLGLHTWLPDAMEGPTPVSALIHAATMVTA 270
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 224 GVYLLIRFNIILSTSWLGQLMLLLSG-LTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSM-GFLKLAMFHLLTHAL 301
Cdd:MTH00032 271 GVFLMIRSFPLFEKAPLTLLIITIFGaLTAFFAATVGLVQNDLKKVIAYSTCSQLGYMVLIIGIeGSHNVGLFHLVNHAF 350
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 302 FKALLFMCAGAIIHNMN-NSQDIRLMGGLSIHMPLTSACFNVSNLALCGMPFLAGFYSKDMILEIV-------------- 366
Cdd:MTH00032 351 FKALLFLSAGSVIHSTTvDEQDMRKMGGLIHSIPFTYTMMLIGSFSIMGLPYLTGFYSKDLILELTysgrnmgipfgssl 430
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 367 ----------------------SISNVNMFSFFLYYFSTGLTVSYSFRLVYYSMTGDLNCGSLNMLNDESWIMLRGMMGL 424
Cdd:MTH00032 431 lkiqgdigikkddrgsiggpegYPSRGSAFAFWLGTVAALLTAFYSIRLVYITFIISPNSPKESLISSHINIVDKRVLTV 510
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 425 LIMSIIGGSMLNWLIFPF-----------PYMICLPIYMKLLTLFVCIVGGLFGYLISLSNLFFLNKSLFMYNLSTFLGS 493
Cdd:MTH00032 511 LSLLCFGAIFVGYLIQDIligdiehpivpPLIKVMPTLMGLFGMGLCLWAQKGTREGELYWGFDPIGPSFLLSIYSFLGG 590
                        570       580       590
                 ....*....|....*....|....*....|....*....
gi 667699636 494 MWFMPYISTYGMIFYPLNYGQL-VVKSFDQGWSEYFGGQ 531
Cdd:MTH00032 591 AWQGDHLINKLVAIPLFSFGHWgIYKTLDRGWLELFGPQ 629
ND5 MTH00095
NADH dehydrogenase subunit 5; Provisional
4-487 2.16e-60

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177158 [Multi-domain]  Cd Length: 527  Bit Score: 209.00  E-value: 2.16e-60
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636   4 ISFVNLISMSLSCFLLSLYFL--LNDMIYFIEWELVSLnsmsivmTFLFDWMSLLFMSFVLMISSLVIFYSKEYMMNDNH 81
Cdd:MTH00095   2 NILIFLILFFFFFLLLFILFLpfMKLNLFFLEWDFLSL-------KFNFYFNSLLFSLILLLVTLSVLVFSSYYMNGELN 74
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636  82 INRFIMLVLMFVLSMMLLIISPNLISILLGWDGLGLVSYCLVIYFQNIKSYNAGMLTALSNRIGDVALLLSIAWMLNYGs 161
Cdd:MTH00095  75 FNYFYFVLLIFVGSMFMLNFSNSVFTMLLSWDLLGISSFFLVLFYNNWDSNSGAMNTALTNRIGDFFIFLFFSGFIFSS- 153
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 162 wnYIFYLEIMQNEFEMLMIgslvMLAAMTKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFNIILSTSWLG 241
Cdd:MTH00095 154 --YYFFSFSFFSSSMILML----LLTSFTKSAQFPFSSWLPKAMSAPTPVSSLVHSSTLVTAGLILLMNFSYLILNMNVM 227
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 242 QLMLLLSGLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGFLKLAMFHLLTHALFKALLFMCAGAIIHNMNNSQ 321
Cdd:MTH00095 228 KIMLLIGLFTMFFSSLSALVEEDMKKVVALSTLSQMGFSMLTFGSGLSFVSFIHLLSHALFKSCLFMQVGYLIHSNFGQQ 307
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 322 DIRLMGGLSIHMPLTSACFNVSNLALCGMPFLAGFYSKDMILEIVSISNVNMFSFFLYYFSTGLTVSYSFRLVYYSMtgd 401
Cdd:MTH00095 308 DGRNYSNNGNLPMFIQLQLLVTLFCLCGLMFTSGMVSKELILELFFFNNYMIFFSLMFFFSVFLTFGYSYRLWKSFF--- 384
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 402 LNCGSLNMLNDESWIMLRGMMGLLIMSIIGgsmLNWLIFPFPYMICLPIYMKLLTLFVCIVGGLFGYLISLSNLFFLNKS 481
Cdd:MTH00095 385 LSFSKVVNVYSSSVLMNFLSLMLVFFSVFF---LWWLNFNLLNLPSLFLYLDFYVPLFYLFMIMLFSFFFFKLLFKELKY 461

                 ....*.
gi 667699636 482 LFMYNL 487
Cdd:MTH00095 462 KFFVDY 467
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
102-378 2.33e-56

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 191.37  E-value: 2.33e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636  102 SPNLISILLGWDGLGLVSYCLVIYF-QNIKSYNAGMLTALSNRIGDVALLLSIAWMLNYGSWNYIFYL----EIMQNEFE 176
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGYWgKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskalTGGLNSSG 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636  177 MLMIGSLVMLAAMTKSAQIPFSSWLPAA-MAAPTPVSALVhSSTLVTAGVYLLIRFNIILSTS--WLGQLMLLLSGLTMF 253
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAyEGAPTPVSALL-AATLVKAGGYGLIRRSLLYLPSspFIQQILLILAIISML 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636  254 MAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGF---LKLAMFHLLTHALFKALLFMCAGAIIHNMNNSQDIRLMGGLS 330
Cdd:pfam00361 160 LGSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTiygIQAAIFHLLTHGLFSAGLFLCAGSVIYRRVHTRNIRDYGGLA 239
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*...
gi 667699636  331 IHMPLTSACFNVSNLALCGMPFLAGFYSKDMILEIVSISNVNMFSFFL 378
Cdd:pfam00361 240 KTMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAG 287
ndhF CHL00025
NADH dehydrogenase subunit 5
10-408 2.11e-53

NADH dehydrogenase subunit 5


Pssm-ID: 214338 [Multi-domain]  Cd Length: 741  Bit Score: 193.57  E-value: 2.11e-53
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636  10 ISMSLScFLLSLYFLLNDMIYFIEWELVSLNSMSIVMTFLFDWMSLLFMSFVLMISSLVIFYSKEYMMNDNHINRFIMLV 89
Cdd:CHL00025  50 IVMIFS-LNLSIQQINGSSIYQYLWSWTINNDFSLEFGYLIDPLTSIMLILITTVGILVLIYSDNYMSHDQGYLRFFAYL 128
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636  90 LMFVLSMMLLIISPNLISILLGWDGLGLVSYCLV-IYFQNIKSYNAGMLTALSNRIGDVALLLSIA---WMLnyGSWNY- 164
Cdd:CHL00025 129 SFFNTSMLGLVTSSNLIQIYIFWELVGMCSYLLIgFWFTRPIAANACQKAFVTNRVGDFGLLLGILgfyWIT--GSFEFr 206
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 165 ----IFYLEIMQNEFEML---MIGSLVMLAAMTKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIR-FNIILS 236
Cdd:CHL00025 207 dlfeIFNNLIYNNEVNLLfatLCAFLLFLGPVAKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGIFLVARlLPLFIV 286
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 237 TSWLGQLMLLLSGLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGFLKLAMFHLLTHALFKALLFMCAGAIIHN 316
Cdd:CHL00025 287 IPYIMNLISLIGIITALLGATLALAQKDIKRGLAYSTMSQLGYMMLALGIGSYRAALFHLITHAYSKALLFLGSGSVIHS 366
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 317 M--------NNSQDIRLMGGLSIHMPLTSACFNVSNLALCGMPFLAGFYSKDMILeivsiSNVNMFSFFLY---YFSTGL 385
Cdd:CHL00025 367 MepivgyspDKSQNMVLMGGLRKYMPITKTTFLLGTLSLCGIPPLACFWSKDEIL-----NDSWLYSPIFAiiaWSTAGL 441
                        410       420
                 ....*....|....*....|...
gi 667699636 386 TVSYSFRLVYYSMTGDLNCGSLN 408
Cdd:CHL00025 442 TAFYMFRIYLLTFEGHLRVHFQN 464
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
47-396 1.20e-49

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 177.26  E-value: 1.20e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636  47 TFLFDWMSLLFMSFVLMISSLVIFYSKEYMMNDNHINRFIMLVLMFVLSMMLLIISPNLISILLGWDGLGLVSYCLVIYF 126
Cdd:COG0651   71 VLVADRLSALFLLLTALVALAVLLYSIGYMRHERRGRRFYPLFLLLLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALG 150
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 127 QNIKSYNAGMLTALSNRIGDVALLLSIAWM-LNYGSWNYIFYLEIMQ--NEFEMLMIGSLVMLAAMTKSAQIPFSSWLPA 203
Cdd:COG0651  151 GTKEALRAGLKYLILNLVGSALFLLGVGLLyGATGTLNMADLAARLAelDPGLLLAAFALLLVGFGIKAALFPLHFWLPD 230
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 204 AMA-APTPVSALVhSSTLVTAGVYLLIRFNIIL----STSWLGQLMLLLSGLTMFMAGLGANFEFDLKKIIALSTLSQLG 278
Cdd:COG0651  231 AYPaAPSPVSALL-SGLLTKVGVYAILRVLTLLfgadPALFLGTLLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIG 309
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 279 LMMSILSMG---FLKLAMFHLLTHALFKALLFMCAGAIIHnMNNSQDIRLMGGLSIHMPLTSACFNVSNLALCGMPFLAG 355
Cdd:COG0651  310 YILLGLGLGtplGLAGALFHLLNHALAKALLFLAAGAIER-ATGTRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSG 388
                        330       340       350       360
                 ....*....|....*....|....*....|....*....|.
gi 667699636 356 FYSKDMILEiVSISNVNMFSFFLYYFSTGLTVSYSFRLVYY 396
Cdd:COG0651  389 FVSKWLLLQ-AALEAGAWLLAAVLLLSSLLTLAYFVRIFGR 428
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
41-364 2.54e-49

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 182.43  E-value: 2.54e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636  41 SMSIVMTFLFDWMSLLFMSFVLMISSLVIFYSKEYMMNDNHINRFIMLVLMFVLSMMLLIISPNLISILLGWDGLGLVSY 120
Cdd:PRK12647  53 SLGVNLSFLLDGLSLTFALLITGIGTLIVLYAGGYLKGHPDLGRFYSYILLFMASMLGLVLSDNLITLFVFWELTSITSF 132
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 121 cLVIYF--QNIKSYNAGMLTALSNRIGDVALLLSIAWMLNYG-----SWNYIFYLEIMQNEFeMLMIGSLVMLAAMTKSA 193
Cdd:PRK12647 133 -LLIGFnhEREAARRAALQALLVTGGGGLALLAGLILLGNVTgtyslSELLASGDVIREHPL-YLAILLLVLGGAFTKSA 210
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 194 QIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFNIILSTSWLGQLMLLLSG-LTMFMAGLGANFEFDLKKIIALS 272
Cdd:PRK12647 211 QFPFHFWLPNAMEAPTPVSAYLHSATMVKAGIYLLARLNPVLGGTPLWQTILPLFGgLTMLTGALLAVRQTDLKLILAYS 290
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 273 TLSQLGLMMSILSMGF---LKLAMFHLLTHALFKALLFMCAGAIIHNmNNSQDIRLMGGLSIHMPLTSACFNVSNLALCG 349
Cdd:PRK12647 291 TVSALGTLVMLLGLGSelaIKAAVLFLVAHSLYKGALFMVAGIIDHE-TGTRDITKLGGLRRAMPITAAAALLAALSMAG 369
                        330
                 ....*....|....*
gi 667699636 350 MPFLAGFYSKDMILE 364
Cdd:PRK12647 370 LPPLFGFLAKELIYE 384
PRK12648 PRK12648
putative monovalent cation/H+ antiporter subunit A; Reviewed
47-395 7.45e-48

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237157 [Multi-domain]  Cd Length: 948  Bit Score: 179.62  E-value: 7.45e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636  47 TFLFDWMSLLFMSFVLMISSLVIFYSKEYMMNDNHINRFIMLVLMFVLSMMLLIISPNLISILLGWDGLGLVSYCLVIYF 126
Cdd:PRK12648  71 SLRLDGLAWLFALLILGIGLLVVLYARYYLSPADPVPRFFSFLLLFMGAMLGIVLSGNLILLVVFWELTSLSSFLLIGYW 150
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 127 QNIKSYNAGMLTALS-NRIGDVALL---LSIAWMLnyGSWNYIFYL---EIMQNEFEMLMIGSLVMLAAMTKSAQIPFSS 199
Cdd:PRK12648 151 HHRADARRGARMALTvTGAGGLALLagvLLLGHIV--GSYDLDVVLaagDLIRAHPLYPPALVLILLGAFTKSAQFPFHF 228
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 200 WLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFNIILSTSWLGQLMLLLSGL-TMFMAGLGANFEFDLKKIIALSTLSQLG 278
Cdd:PRK12648 229 WLPHAMAAPTPVSAYLHSATMVKAGVFLLARLWPVLAGTEEWFWIVGGAGLiTLLLGAYFALFQHDLKGLLAYSTISHLG 308
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 279 LMMSILSMGfLKLA----MFHLLTHALFKALLFMCAGAIIHNmNNSQDIRLMGGLSIHMPLTSACFNVSNLALCGMPFLA 354
Cdd:PRK12648 309 LITLLLGLG-SPLAavaaIFHIINHATFKASLFMAAGIIDHE-TGTRDMRRLSGLRRLMPITATLAMVAAAAMAGVPLLN 386
                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*
gi 667699636 355 GFYSKDMIL-EIVSISNVNMFSFFLYYFST---GLTVSYSFRLVY 395
Cdd:PRK12648 387 GFLSKEMFFaETLDTHLLGSLDWLLPVAATlagAFSVAYSLRFIH 431
2a6301s01 TIGR00940
Tmonovalent cation:proton antiporter; This family of proteins constists of bacterial ...
6-400 8.78e-48

Tmonovalent cation:proton antiporter; This family of proteins constists of bacterial multicomponent K+:H+ and Na+:H+ antiporters. The best characterized systems are the PhaABCDEFG system of Rhizobium meliloti which functions in pH adaptation and as a K+ efflux system and the MnhABCDEFG system of Staphylococcus aureus which functions as a Na+:H+ antiporter. [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 273353 [Multi-domain]  Cd Length: 793  Bit Score: 178.50  E-value: 8.78e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636    6 FVNLISMSLSCFLLSLYFLL---NDMIYFIEWelvsLNSMSIVMTFLFDWMSLLFMSFVLMISSLVIFYSKEYMMNDNHI 82
Cdd:TIGR00940  30 FVLAIPLVCFLYTLGLYPYTasgGVLHYTIDW----VPELGLNFTLYMDGLALLFSLLITGIGVLVVLYSIYYLSKEEPL 105
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636   83 NRFIMLVLMFVLSMMLLIISPNLISILLGWDGLGLVSYCLVIY-FQNIKSYNAGMLTALSNRIGDVALLLSIAWM-LNYG 160
Cdd:TIGR00940 106 PNFYAYLLAFMGAMLGVVLSDNLILLYVFWELTSIVSFLLISYwHHRAHSRYGAQKSLTITVFGGLAMLGGLILLgKITG 185
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636  161 SWNYIFYLE---IMQNEFEMLMIGSLVMLAAMTKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFNIILST 237
Cdd:TIGR00940 186 SFSIDAVIAsadAIRNSPLFGTAMVLVLLGAFTKSAQFPFHIWLPDAMEAPTPVSAYLHSATMVKAGLYLLARFTPVFAG 265
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636  238 SWLGQLMLLLSGL-TMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGFLKL----------------AMFHLLTHA 300
Cdd:TIGR00940 266 TEAWFWIVGLAGLiTLLWGSYFAIFQQDLKGILAFSTISQLGLIMVLLGLGSPSYhyqgddskiyalaavaAVFHLINHA 345
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636  301 LFKALLFMCAGAIIHNmNNSQDIRLMGGLSIHMPLTSACFNVSNLALCGMPFLAGFYSKDMIL-EIVSISNVNMFSF--- 376
Cdd:TIGR00940 346 TFKGSLFMAAGIIDHE-TGTRDIRKLGGLFHIMPITFTLAMIASAAMAGVPPFNGFLSKEMFFaEAITAHLVNPFDTvtl 424
                         410       420
                  ....*....|....*....|....*....
gi 667699636  377 -----FLYYFSTGLTVSYSFRLVYYSMTG 400
Cdd:TIGR00940 425 gylfpYVATVASVFTFVYSLRFIHGVFFG 453
PRK12650 PRK12650
DUF4040 family protein;
51-394 2.08e-47

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 178.31  E-value: 2.08e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636  51 DWMSLLFMSFVLMISSLVIFYSKEYMMNDNHINRFIMLVLMFVLSMMLLIISPNLISILLGWDGLGLVSYCLVIyfQNIK 130
Cdd:PRK12650  78 DALSLFFALLALVIGAVVFIYSARYLPRKKGNTSFYLLMTAFMAAMLLLVLADDVVVLFVAWELVSLASFFLIA--RSGS 155
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 131 SYNAG-MLTALSNRIGDVALLLSIAWM------------LNYGSWNyifyleimQNEFEMLMIGSLVMLAAMTKSAQIPF 197
Cdd:PRK12650 156 GGEAGsIRTLILTFFGGLTLLAAVAIAatqtgttslsgiLHSDVWA--------EKPGLTTVVAVLIAVAAFTKSAQFPF 227
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 198 SSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFNIILSTSWLGQLMLLLSGL-TMFMAGLGANFEFDLKKIIALSTLSQ 276
Cdd:PRK12650 228 HFWLPEAMAAITPVSAFLHAAAVVKAGIYLLLRFSPVFHDVAVWNWLLIIVGMiTALMGAVFAVQKTDLKKLTAYSTVSQ 307
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 277 LGLMMSILSMGF---LKLAMFHLLTHALFKALLFMCAGAIIHNMnNSQDIRLMGGLSIHMPLTSACFNVSNLALCGMPFL 353
Cdd:PRK12650 308 LGWIVATIGVGTpfaLTAAVVHTLAHALFKSSLFMLIGVVDHQA-GTRDIRRLGSLWRRMPFTFVSVTIAALSMAAVPPL 386
                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*
gi 667699636 354 AGFYSKDMILEIVSISNVNMFSFFLYYFSTGL----TVSYSFRLV 394
Cdd:PRK12650 387 FGFVSKEGMLTAFLEAPGGNAGVVLLLVGAALgavfTFAYSARLV 431
NADH5_C pfam06455
NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of ...
389-562 6.50e-47

NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of several NADH dehydrogenase subunit 5 proteins and is found in conjunction with pfam00361 and pfam00662.


Pssm-ID: 368917 [Multi-domain]  Cd Length: 181  Bit Score: 162.33  E-value: 6.50e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636  389 YSFRLVYYSMTGDLNCGSLNMLNDESWIMLRGMMGLLIMSIIGGSMLNWLIFPFPYMICLPIYMKLLTLFVCIVGGLFGY 468
Cdd:pfam06455   1 YSFRLIYYVMTGSPRFSSLSPINENNPIMINPIKRLAIGSIIGGSLLSWLIFPKPPMMTMPLYLKLLALLVTILGLLLGL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636  469 LISLSNLFFLNKSLfMYNLSTFLGSMWFMPYISTYGMIFYPLNYGQLVVKSFDQGWSEYFGGQHLYQKLSMYSKTLFLMH 548
Cdd:pfam06455  81 ELSNLSNKQLKKSL-NFNLHSFSGSMWFFPNLSHRLIPKLSLKLGQKLAKQIDQGWSEKFGPQGIAKTLMTLSKIIQNSQ 159
                         170
                  ....*....|....
gi 667699636  549 NNSLKIYLLLFVFW 562
Cdd:pfam06455 160 KGLIKIYLLSFLLW 173
ND5 MTH00063
NADH dehydrogenase subunit 5; Provisional
13-476 1.05e-46

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214414 [Multi-domain]  Cd Length: 522  Bit Score: 171.60  E-value: 1.05e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636  13 SLSCFLLSLYFLLNDMIYFIEWELVSLNSMSIVMTFLFDWMSLLFMSFVLMISSLVIFYSKEYMMNDNHINRFIMLVLMF 92
Cdd:MTH00063   6 SLLLCLLIFFLFLVGVSSSVSLNFLSFGGYSWLINFDFDYVTFGVLLMLLICFYYSLLYTFHYFGGSYASFLLNKLIVLF 85
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636  93 VLSMMLLIISPNLISILLGWDGLGLVSYCLVIYFQNIKSYNAGMLTALSNRIGDVALLLSIAWMLNYGSWNYIFYLeimq 172
Cdd:MTH00063  86 VLVMGILVLTGDFLSTLIFWEYLGVVSFFLILFYDNFLSLRASVVTLVSSRFGDVCLFLLIGLSCWGGSGSFLCCL---- 161
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 173 nefemlmigsLVMLAAMTKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFNIILSTSWLGQLMLLLSGLTM 252
Cdd:MTH00063 162 ----------FFFLIVFTKSASFPFISWLLEAMRAPTPVSSLVHSSTLVAAGVWFVMRYDYLLGFSWLSIFFSVLLLLTI 231
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 253 FMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGFLKLAMFHLLTHALFKALLFMCAGAIIHNMNNSQDIRLMGGLSIH 332
Cdd:MTH00063 232 FITGVSSLFFSDLKKIVALSTCNNISWCVLYLIYGDVILSLFQLVSHGVSKCLLFMLVGDVMSGSGGSQSSNCVYSSILY 311
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 333 MPLTSACFNVSNLALCGMPFLAGFYSKDMILEIVSISNVNMFSFFLYYFSTGLTVSYSFRL--VYYSMTGDLNCGSLNML 410
Cdd:MTH00063 312 GSWNLFYLFLLVLGLSGVPFIGVFFSKHFLLSSFSSVVFNVSLLLVVILCVFLSYLYSFRLclILFGVKSSLSSGVRFLF 391
                        410       420       430       440       450       460
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 667699636 411 NDESWImlrgmmgllimsIIGGSMLNWLIFP-FPYMICLPIYMKLLTLFVCIVGGLFGYLISLSNLF 476
Cdd:MTH00063 392 FNSGLM------------VFLWLFINYYVFLlLDEVVYLGVFISLVLLLVQLLGLLVGVLFYDSNLF 446
PRK06525 PRK06525
hydrogenase 4 subunit D; Validated
11-363 8.03e-46

hydrogenase 4 subunit D; Validated


Pssm-ID: 180606 [Multi-domain]  Cd Length: 479  Bit Score: 168.23  E-value: 8.03e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636  11 SMSLSCFLLSLYFLLNDMIYFIEWELVSLNSMsIVMTFLFDWMSLLFMSFVLMISSLVIFYSKEYMMNDNH-------IN 83
Cdd:PRK06525  35 ALTTLCMLSLAYAFYQAGKVAVTLTLVNLGDV-ALFGLVIDPVSVLIGFVVVLLGLLVTLYSTGYMSPGNRehpvhegTG 113
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636  84 RFIMLVLMFVLSMMLLIISPNLISILLGWDGLGLVSYCLVIYFQNIKSYNAGMLTALSNRIGDVALLLSIAWMLNYGSWN 163
Cdd:PRK06525 114 RYYAFLLLFIGAMAGLVYSSTLLGLLLFFEITGLCSWALISYYQSPKALRSALKALLITHIGSLGLYLAAATLFLQTGTF 193
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 164 YIFYLEIMQNEFEMLMIGsLVMLAAMTKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRfnIILS----TSW 239
Cdd:PRK06525 194 ALSALSGLHGSLKYLVFL-GILFAAWGKSAQLPFYSWLPDAMEAPTPASAYLHAASMVKVGVYIFAR--AIQSmgpiPHV 270
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 240 LGQLMLLLSGLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGF------LKLAMFHLLTHALFKALLFMCAGAI 313
Cdd:PRK06525 271 IGYVGAVMAIVTLLYGFLMYLPQQDMKRLLAYSTITQLGYMFFGLSLAIlgsrlaLEGSIAYIFNHAFAKSLFFLVAGAL 350
                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|
gi 667699636 314 IHNMnNSQDIRLMGGLSIHMPLTSACFNVSNLALCGMPFLAGFYSKDMIL 363
Cdd:PRK06525 351 SYSC-GTRLLPRLRGVLKKLPLVGVGFCVAALAITGVPPFNGFFSKFPIF 399
PRK12646 PRK12646
DUF4040 family protein;
31-395 2.15e-42

DUF4040 family protein;


Pssm-ID: 183646 [Multi-domain]  Cd Length: 800  Bit Score: 162.62  E-value: 2.15e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636  31 FIEWELVSLNSMSIVMTFLFDWMSLLFMSFVLMISSLVIFYSKEYM-MNDNHINRFIMLVLMFVLSMMLLIISPNLISIL 109
Cdd:PRK12646  57 YLSTSIPWMKTLDINLDLRLDGLSLMFSLIISLIGIAVFFYATQYLsSRKDNLPRFYFYLTLFMFSMIGIVLSDNTILMY 136
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 110 LGWDGLGLVSYCLVIY-FQNIKSYNAGMLTALSNRIGDVALLLSIAWMLNYGSWNYIFYL-----EIMQNEFEMLMIgSL 183
Cdd:PRK12646 137 VFWELTSVSSFLLISYwYNNGDSQFGAIQSFMITVFGGLALLVGFIMLYIMTGTNNITEIlgqadHIKNHGLFIPMI-FM 215
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 184 VMLAAMTKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFNIILSTS-WLGQLMLLLSGLTMFMAGLGANFE 262
Cdd:PRK12646 216 FLLGAFTKSAQFPFHIWLPRAMAAPTPVSAYLHSATMVKAGIFLLFRFTPLLGLSnMYIYIVTFVGLITMLFGSITALKQ 295
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 263 FDLKKIIALSTLSQLGLMMSILSMG-----------------FLKLAMFHLLTHALFKALLFMCAGAIIHNmNNSQDIRL 325
Cdd:PRK12646 296 WDLKGILAYSTISQLGMIMAMVGIGggyaqhqqdaiasiyvfVLFAALFHLMNHAIFKCALFMGVGIIDHE-AGTRDIRI 374
                        330       340       350       360       370       380       390
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 667699636 326 MGGLSIHMPLTSACFNVSNLALCGMPFLAGFYSKDMILE-IVSISNVNMFSFFLYYFSTGLTVSYS-FRLVY 395
Cdd:PRK12646 375 LSGMRQLFPKMNLVMTIAALSMAGVPFLNGFLSKEMFLDaLTQTGQLSQFSLISMIIIVFIGVIASiFTFTY 446
PRK12645 PRK12645
monovalent cation/H+ antiporter subunit A; Reviewed
41-400 1.01e-41

monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237155 [Multi-domain]  Cd Length: 800  Bit Score: 160.86  E-value: 1.01e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636  41 SMSIVMTFLFDWMSLLFMSFVLMISSLVIFYSKEYMMNDNH-INRFIMLVLMFVLSMMLLIISPNLISILLGWDGLGLVS 119
Cdd:PRK12645  67 SLGINFTLYVDGLSLLFALLITGIGSLVVLYSIYYLSKKKEqLGNFYVYLLLFMGAMLGVVLSDNLIVLYLFWELTSISS 146
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 120 YCLVIY-FQNIKSYNAGMLTALSNRIGDVALL------------LSIAWMLNYGSwnyifylEIMQNEFEML-MIgsLVM 185
Cdd:PRK12645 147 FLLISYwYEREASRYGAQKSMLITVFGGLSMLggfillyimtgsFSIREMIANAD-------EIQNSPLFIPaMI--LIL 217
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 186 LAAMTKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFNIILSTSWLGQLMLLLSGL-TMFMAGLGANFEFD 264
Cdd:PRK12645 218 LGAFTKSAQFPFYIWLPDAMEAPTPVSAYLHSATMVKAGIYLVARFTPIFAGSQVWFWTVTLVGLiTLFWGSLNAVKQTD 297
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 265 LKKIIALSTLSQLGLMMSILSMGFLKL----------------AMFHLLTHALFKALLFMCAGAIIHNmNNSQDIRLMGG 328
Cdd:PRK12645 298 LKGILAFSTVSQLGLIMSLLGIGAASLhyqgddskiyaaaitaAIFHLINHATFKGSLFMIVGIVDHE-TGTRDIRKLGG 376
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 329 LSIHMPLTSACFNVSNLALCGMPFLAGFYSKDMILE-IVSISNVNMFSF--------FLYYFSTGLTVSYSFRLVYYSMT 399
Cdd:PRK12645 377 LMTIMPITFTIALIGALSMAGLPPFNGFLSKEMFFEsMLNATEANLFSLdtwgvlfpVIAWVASVFTFVYSIIFIFKTFF 456

                 .
gi 667699636 400 G 400
Cdd:PRK12645 457 G 457
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
41-366 5.58e-41

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 158.93  E-value: 5.58e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636  41 SMSIVMTFLFDWMSLLFMSFVLMISSLVIFYSKEYMMNDN-HINRFIMLVLMFVLSMMLLIISPNLISILLGWDGLGLVS 119
Cdd:PRK12644  63 SLGLDLAFRLDALAALMSLLVLGVGALVLLYCARYFDDDEpRLGRFAAELVAFAGAMFGLVTSDNLLLLYVFWELTTVLS 142
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 120 YCLV-IYFQNIKSYNAGMLTALSNRIGDVALLLSIAWMLN-YGSWNYIfylEIMQNEFEMLMIGS---LVMLAAMTKSAQ 194
Cdd:PRK12644 143 FLLIgHYAERAASRRAALQALLVTTAGGLAMLVGIIILGQaAGTYRLS---ELLADPPTGPAVSVavvLILVGALSKSAI 219
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 195 IPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFNIILSTSWLGQLMLL-LSGLTMFMAGLGANFEFDLKKIIALST 273
Cdd:PRK12644 220 VPFHFWLPGAMAAPTPVSAYLHAAAMVKAGIYLVARLAPGFADVPVWRPTVLvLGLATMLLGGWRALRQHDLKLILAYGT 299
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 274 LSQLGLMMSILSMG-----FLKLAMfhLLTHALFKALLFMCAGAIIHNmNNSQDIRLMGGLSIHMPLTSACFNVSNLALC 348
Cdd:PRK12644 300 VSQLGFLTVLVGIGtrdaaLAGLAM--LLAHALFKAALFLVVGIIDHS-TGTRDIRKLSGLGRRQPVLAVVAALAAASMA 376
                        330
                 ....*....|....*...
gi 667699636 349 GMPFLAGFYSKDMILEIV 366
Cdd:PRK12644 377 GLPPLLGFVAKEAALEAV 394
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
39-364 1.21e-34

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 139.58  E-value: 1.21e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636  39 LNSMSIVMTFLFDWMSLLFMSFVLMISSLVIFYSKEYMMNDNHINRFIMLVLMFVLSMMLLIISPNLISILLGWDGLGLV 118
Cdd:PRK12649  67 LPSAGVEFSIYADGLAVLIGLIASGIGVIIMSYSNGYMSHKEDLPRYYQYLLLFMGSMIGMVFSGNTIQLFIFWELTSIT 146
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 119 SYCLVIYFQNIKSYNAGMLTALSNRIGDVALLLSIAWMLNYGSWNYIF--------YLEIMQNEFEMLMIGSLVMLAAMT 190
Cdd:PRK12649 147 SFMLIGYWRHRPESVYGATKSLLITAGGGLFMFAGFLLLHVITGTYDIatilqdseLIENIKGHPLFLITLILIFIGAAA 226
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 191 KSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFNIILS--TSWLgqlmLLLSG---LTMFMAGLGANFEFDL 265
Cdd:PRK12649 227 KSAQGPFYIWLPNAMEAPTPVSAFLHSATMVKAGVYLVARIHPIFSgtEAWF----ILVSGtgmITMVLAGFLAFRQTDI 302
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 266 KKIIALSTLSQLGLMMSIL--------SMGFlKLAMFHLLTHALFKALLFMCAGAIIHNMnNSQDIRLMGGLSIHMPLTS 337
Cdd:PRK12649 303 KAILAYSTISQLAYLMTMYgyttyhepGLGV-AAATFHLLNHATFKACLFLVAGIVAHEA-ATRDIRKLGGLRKEMPITF 380
                        330       340
                 ....*....|....*....|....*..
gi 667699636 338 ACFNVSNLALCGMPFLAGFYSKDMILE 364
Cdd:PRK12649 381 IVASIAALAMAGIPPLNGFLSKEMFYE 407
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
47-439 2.96e-34

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 135.78  E-value: 2.96e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636  47 TFLFDWMSLLFMSFVLMISSLVIFYSkeYMMNDNHINRFIMLVLMFVLSMMLLIISPNLISILLGWDGLGLVSYCLVIYF 126
Cdd:PRK08375  72 ELRADSLSALFLLVTSILAIAALLYA--IGYGEHRQTRFYALFLLLLAGLLGALLTADLFNLFVFLEIMSLSSYALVAMG 149
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 127 QNIKSYNAGMLTALSNRIGDVALLLSIAwmLNY---GSWNYIFYLEIMQNEFEMLMIGSLVMLAAMTKSAQIPFSSWLPA 203
Cdd:PRK08375 150 GDRRALAAARKYLIVGLIGSTFLLIGVG--LLYgvtGTLNMADLAGALAENPTVVTAFGFVLLALALKAAVFPLHTWLPR 227
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 204 AMAAPTPVSALVHSSTLVTAGVYLLIRFNI------ILSTSWLGQLMLLLSGLTMFMAGLGANFEFDLKKIIALSTLSQL 277
Cdd:PRK08375 228 AYPAAPPVVTALLSGLVTKVAVYALIRIYFtvfggdFRFALGLGWLLAVLALLSMLVGSLAALGQDDVKRVLAYSTVSQM 307
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 278 G---LMMSILSMGFLKLAMFHLLTHALFKALLFMCAGAIIHNMnNSQDIRLMGGLSIHMPLTSACFNVSNLALCGMPFLA 354
Cdd:PRK08375 308 GyilLGLALLTPLALAAGLLHLLHHALMKGALFLAAGAIEVTY-GTRRLSELSGLGRRMPLTAAAFAVASLSLIGVPPTS 386
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 355 GFYSKDMILeIVSISNVNMFSFFLYYFSTGLTVSYSFRLVYYSMTGDLNCGSLNMLNDESWIMLRGMMGLLIMSIIGGSM 434
Cdd:PRK08375 387 GFVSKWYLV-VGAVEAGQWLVLAVLLASSLLALLYFLRIWYRAFFGPPPPGSEAPKQEAPLGMLAPSLALALLSLLLGIY 465

                 ....*
gi 667699636 435 LNWLI 439
Cdd:PRK08375 466 AGPLL 470
PRK06521 PRK06521
hydrogenase 4 subunit B; Validated
91-359 2.76e-28

hydrogenase 4 subunit B; Validated


Pssm-ID: 235820 [Multi-domain]  Cd Length: 667  Bit Score: 119.61  E-value: 2.76e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636  91 MFVLSMMLLIISPNLISILLGWDGLGLVSYCLVIYFQNIKS-YNAGMLTALSNRIGDVALLLSIaWMLNYGSWNYIFylE 169
Cdd:PRK06521 121 LFLASMVLVLLADDAFSFLVAWETMSLSSWFLVIANHREAEiRRAGFLYLLMAHAGALAILLAF-GLLARESGSYDF--A 197
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 170 IMQNEFEMLMIGSLVMLAAM----TKSAQIPFSSWLPAAM-AAPTPVSALVhSSTLVTAGVYLLIRFNIIL---STSWLG 241
Cdd:PRK06521 198 AMRAAHLSPFWASLVFLLALfgfgAKAGLVPLHVWLPRAHpAAPSHVSALM-SGVMLKVAIYGILRVVFDLlgaPGWWWG 276
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 242 QLMLLLSGLTMFMAGLGANFEFDLKKIIALSTLSQLGLM-MSI-LSMGF------------LKLAMFHLLTHALFKALLF 307
Cdd:PRK06521 277 VLVLALGAISAVLGVLYALAEHDLKRLLAYSTIENIGIIfVGLgLAMVFiaygmpllaalaLTAALYHLLNHALFKSLLF 356
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|..
gi 667699636 308 MCAGAIIHNMnNSQDIRLMGGLSIHMPLTSACFNVSNLALCGMPFLAGFYSK 359
Cdd:PRK06521 357 LGAGAVLHAT-GTRDMEKLGGLIRRMPWTAWAFLIGCLAISALPPLNGFVSE 407
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
46-364 1.02e-27

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 117.91  E-value: 1.02e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636  46 MTFLFDWMSLLFMSFVLMISSLVIFYSKEY---MMNDNHINRFIMLVLMFVLSMMLLIISPNLISILLGWDGLGLVSYCL 122
Cdd:PRK08667  71 ITFHIDRLAAFFIILIGLVSLCVAIYSLGYnehMSSNERANLLSALTALFILSMLGVVASANTFSFLFFWEIMALSSFFL 150
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 123 VIY-FQNIKSYNAGMLTALSNRIGDVALLLSIAWM-LNYGSWNYIFyLEIMQNEFEMLMIgsLVMLAAMTKSAQIPFSSW 200
Cdd:PRK08667 151 VMNdYQEEETQRAGIFYFVMTQLSTVFLMLGIIVLfIQTGSFELSP-LGASAGILSLVFL--LLFLGFGIKAGIIPFHKW 227
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 201 LPAAM-AAPTPVSALVhSSTLVTAGVYLLIRFNIILSTS--WLGQLMLLLSGLTMFMAGLGANFEFDLKKIIALSTLSQL 277
Cdd:PRK08667 228 LPYAHpASPSNVSALM-SGVMLKVAVYGLVRFLMDVLSPelWWGVLILLAGSISALLGVIYALKEHDLKGLLAYSSIENI 306
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 278 GLMM--------------SILSMGFLKLAMFHLLTHALFKALLFMCAGAIIHNMnNSQDIRLMGGLSIHMPLTSACFNVS 343
Cdd:PRK08667 307 GIILmgiglyvifgvyglDTLALLALGGALFHSLNHALFKSLLFLTAGSVVHAT-GTRNIEKMGGLVKLMPYTSALFLVG 385
                        330       340
                 ....*....|....*....|.
gi 667699636 344 NLALCGMPFLAGFYSKDMILE 364
Cdd:PRK08667 386 AVSIAALPPFNGFASELLLYE 406
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
47-364 3.29e-26

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 111.97  E-value: 3.29e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636  47 TFLFDWMSLLFMSFVLMISSLVIFYSKEYMMNDNhinrFIMLVLMFVLSMMLLIISPNLISILLGWDGLGLVSYCLVIYF 126
Cdd:PRK07234  62 TLRADALSGYFILTNALVTLAVIFYCWESAKTRF----FYAQLLILHGSVNAAFVCADLISLYVALEVLSIATFLLVAYP 137
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 127 QNIKSYNAGM-LTALSNrIGDVALLLSIAwmLNYGSWNYIFYLEIMQNEFEMLmigSLVMLAAMTKSAQIPFSSWLPAAM 205
Cdd:PRK07234 138 RTDRAIWVGLrYLFYSN-VAMLFYLIGAV--LVYQANGTFAFSGLATADPEAF---ALIALGLLVKGGIFVSGLWLPLTH 211
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 206 AAPTPVSALVHSSTLVTAGVYLLIRFNIILSTSWlgQLMLLLSGLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILS 285
Cdd:PRK07234 212 SEAEPPVSALLSGVVVKAGVFPLVRCALDVPGLD--LIVRIFGVGTALLGVLFALLEKDLKRMLAFSTISQLGFILAAPL 289
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 667699636 286 MGflklaMFHLLTHALFKALLFMCAGAiIHNMNNSQDIRLMGGLSIHMPLTSACFNVSnlalcGMPFLAGFYSKDMILE 364
Cdd:PRK07234 290 VG-----GLYALAHGLVKSTLFLCAGA-LPSRNFTELISQMLGIGKWIPLTMASFSIA-----GFPLLAGFVSKVLTLK 357
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
18-378 1.08e-24

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 107.59  E-value: 1.08e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636  18 LLSLYFLLNDMIyfiEWELVSLNSMSIvmTFLFDWMSLLFMSFVLMISSLVIFYSKEYMMNDN--HINRFIMLVLMFVLS 95
Cdd:PRK06589  54 LIDLLFLKGIRA---QFELMDFGNYSI--GLHLEPLGLIFLLLIGFLWICALLYTPKYLAINNidSSSRFLFFFNLTILI 128
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636  96 MMLLIISPNLISILLGWDGLGLVSYCLVIYFQNIKSYNAGmLTALSNRIGDVALLLSIAWMLNYGSWNYIFYLEIMQNEF 175
Cdd:PRK06589 129 GVLIALSSDLFTMFVCYELLTISTAFLIGHTRNNISLSGG-YKYLKILMISALLLFLPAVILIYTKTGNLDFVSGGLFSK 207
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 176 EMLMIGSLVMLAAMTKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIR-----FNIILSTSWLGQLMLL--LS 248
Cdd:PRK06589 208 NQSIILLLMFIYGIAKTAIFPVHSWLPAAMVAHYPVSALLHAVIVVKTGLFCIYKillyiFGLSYLQRIFAEFNWLifIP 287
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 249 GLTMFMAGLGANFEFDLKKIIALSTLSQLGLMM---SILSMGFLKLAMFHLLTHALFKALLFMCAGAIIhNMNNSQDIRL 325
Cdd:PRK06589 288 IVSIFYSSLKALKTDNIKKILAYSTISQLSLALlsaFILTPKALGAAILHLVSHSFAKICLFYSMGSIY-SLKKEDQVDK 366
                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|...
gi 667699636 326 MGGLSIHMPLTSACFNVSNLALCGMPFLAGFYSKDMILEIVSISNVNMFSFFL 378
Cdd:PRK06589 367 LHGTSKSFPLISFIISISSLSLIGIPIFSGFISKFLILLAASEQNQPWLSIIV 419
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
17-443 2.39e-24

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 107.39  E-value: 2.39e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636  17 FLLSLYFLLNDMiyfiEWELVSLNSMSIVMTFLFDWMSLLFMSFVLMISSLVIFYSKEYMMNDNHInrFIMLVLMFVLSM 96
Cdd:PRK08668  38 FLIKLYFTLKVG----TGEKLTLFFGGFKLTFTLTHLSWFFAMISLLVIFSVAFFMVSEKTKNDAY--FNMFALMSLAGV 111
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636  97 MLLIISPNLISILLGWDGLGLVSYcLVIYFQNIKSYNAGMLTALSNRIGDVALLLSIAWMLN-YGSWNYIFYLEIMQNE- 174
Cdd:PRK08668 112 LGVFLANDLLTLYIFWEIMTFSSF-MMVPMGKKESRKASLKYFVLSAIGAYAMLYAIFLIYAkTGTFDFADISQGLINDt 190
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 175 -FEMLMIGSLVMLAA-MTKSAQIPFSSWLPAAMA-APTPVSAlVHSSTLVTAGVY-------------LLIRFNIILSTS 238
Cdd:PRK08668 191 sTGFALIVFLFLLAFgVAKAGIFPLHVWAPDAYSeAPQSFSA-VLSGQLSKLGAYgfllvlyvlpgtkLFSEFGTYRGVP 269
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 239 WLGQLMLLLSGLTMFMAGLGANFEFDLKKIIALSTLSQLG-LMMSILSMGFLKLA--MFHLLTHALFKALLFMCAGAIIH 315
Cdd:PRK08668 270 LFNYILAWLGNISIIVGTLMAILQEDIKKLIAYSSVANGGyILVGLGLGTSLGFAggLFHVFNHALFKGLFFLIFAAVIY 349
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 316 NMNNSQdIRLMGGLSIHMPLTSACFNVSNLALCGMPFLAGFYSKDMILEIVsISNVNMFSFFLYYFSTGLTVSYSFRLVY 395
Cdd:PRK08668 350 RTGTTK-ISEMGGLIEKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEAL-ISKGMPITAFMAFFGSIGSFLYVFRPLA 427
                        410       420       430       440
                 ....*....|....*....|....*....|....*....|....*...
gi 667699636 396 YSMTGDLNcGSLNMLNDESWIMLRGMMGLLIMSIIGGsmlnwlIFPFP 443
Cdd:PRK08668 428 GVFLGQLP-SDHKDVKEAPLPMLIPMAILVLLNVVFG------VAPGL 468
PRK08168 PRK08168
NADH-quinone oxidoreductase subunit L;
53-311 2.78e-24

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236171 [Multi-domain]  Cd Length: 516  Bit Score: 106.71  E-value: 2.78e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636  53 MSLLFMSFVLMISSLVIFYSKEYMMNDNHINRFImLVLMFVL-SMMLLIISPNLISILLGWDGLGLVSYCLVIYFQNIKs 131
Cdd:PRK08168  70 LGLVMAALVQLLGWVIGRFSHRYLQGEPGQRRYV-RALAGVLaAVHLLVLSDHLLVLIAAWAAISLALHRLLCFYPDRP- 147
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 132 ynAGMLTA----LSNRIGDVALLLSIA-WMLNYGSWnyiFYLEIMQNEFEMLMIGS------LVMLAAMTKSAQIPFSSW 200
Cdd:PRK08168 148 --FARLAAhkkfIADRLAELLLLAAAAlAYLEVGSL---SLSALWAHLAAQGASPSlqaaalLLVLAVILKTAQLPVHGW 222
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 201 LPAAMAAPTPVSALVHSStLVTAGVYLLIRFNIILSTSWLGQLMLLL-SGLTMFMAGLGANFEFDLKKIIALSTLSQLGL 279
Cdd:PRK08168 223 LIQVMEAPTPVSALLHAG-VVNLGGFVLIRFAPLLEQAPPARWLLVLvGLATAVLAGLVMLTRISIKVRLAWSTVAQMGF 301
                        250       260       270
                 ....*....|....*....|....*....|..
gi 667699636 280 MMSILSMGFLKLAMFHLLTHALFKALLFMCAG 311
Cdd:PRK08168 302 MLLECGLGLYELALLHLVAHSLYKAHAFLSAS 333
PRK07390 PRK07390
NAD(P)H-quinone oxidoreductase subunit F; Validated
140-358 3.18e-24

NAD(P)H-quinone oxidoreductase subunit F; Validated


Pssm-ID: 236008 [Multi-domain]  Cd Length: 613  Bit Score: 106.92  E-value: 3.18e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 140 LSNRIGDVALLLSIAWMLNY-GSWNYIFYLEIMQNEFEMLMIGSLVMLA----AMTKSAQIPFSSWLPAAMAAPTPVSAL 214
Cdd:PRK07390 178 LTKRVGDLLLLMGVVALSPLaGTLNFSDLAAWAATANLDPLTATLLGLAliagPTGKCAQFPLHLWLDEAMEGPNPASIL 257
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 215 vHSSTLVTAGVYLLIRFNIILSTS-WLGQLMLLLSGLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGFLKLAM 293
Cdd:PRK07390 258 -RNSVVVATGAWVLIKLQPVLALSpVALTVLIVIGTVTAIGASLVAIAQIDIKRALSYSTSAYLGLVFIAVGLQQPDIAL 336
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 667699636 294 FHLLTHALFKALLFMCAGAIIHNmNNSQDIRLMGGLSIHMPLTSACFNVSNLALCGMPFLAGFYS 358
Cdd:PRK07390 337 LLLLTHAIAKALLFMSVGSIILT-TITQDLTELGGLWSRMPATTLAFLVGSAGLVALLPLGGFWA 400
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
51-395 3.93e-24

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 106.21  E-value: 3.93e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636  51 DWMSLLFMSFVLMISSLVIFYSKEYMMNDNHINRFIMLVLMFVLSMMLLIISPNLISILLGWDGLGLVSYCLVIYFQNIK 130
Cdd:PRK12667  81 DLLGALLGLLTALVMFLILIYSYWYLEHESGPEWYYTLLLGLEAGMLGILLTGDAFNLFVMLEVLSISAYGLVAYYRDRG 160
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 131 -SYNAGMLTALSNRIGDVALLLSIAWMLN-YGSWN--------YIFYLEIMQNEFEMLMIGSLVMLAAMT-----KSAQI 195
Cdd:PRK12667 161 dAVEAAIKYALIGAVGTTLYFLALAFLYAtFGTLNmadlsakiRGLSFPLTGGLAGNPPLALGVALALALwaftiKAAIF 240
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 196 PFSSWLPAAM-AAPTPVSALVhSSTLVTAGVYLLIRF-------NIILST--SWLGQLMLLLSGLTMFMAGLGANFEFDL 265
Cdd:PRK12667 241 PNHFWLPDAHpAAPSPVSAML-SGLVVNVGAYAIIRFlytifgiSPSLIDfrAALSPILIILGAVSAIIGALMMVVQKDV 319
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 266 KKIIALSTLSQLGLMMSILSMGF---LKLAMFHLLTHALFKALLFMCAGAIIHNMNnSQDIRLMGGLSIHMPLTSACFNV 342
Cdd:PRK12667 320 KRLLAYSTISHMGYIFMGIGIGTqlgLAAALFHIINHAIAKSLLFLASGVFIHAAG-TRDIDELAGLGRKMPIASFAFLI 398
                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|...
gi 667699636 343 SNLALCGMPFLAGFYSKDMILEIVSISNVNMFSFFLYYFSTgLTVSYSFRLVY 395
Cdd:PRK12667 399 GALSLVGIPPLNGFFSKLLLFNALLESGFYLPALVLLIASA-ISLVGYFRAWY 450
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
44-370 9.32e-24

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 104.79  E-value: 9.32e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636  44 IVMTFLFDWMSLLFMSFVLMISSLVIFYSKEYMMNDNHINRFIMLVLMFVLSMMLLIISPNLISILLGWDGLGLVSYCLV 123
Cdd:PRK08376  82 IRIIWEVDLFGAFMALIATIVSFLAVLYSISYMKHDTGLDKYYTLILLLELGMLGMAITGDLFNFFVFLEIMSIASYALV 161
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 124 IYFQNI-KSYNAGMLTALSNRIGDVALLLSIAWML-NYGSWNYIFYLEIMQNEFEMLMIGSLVMLAA--MTKSAQIPFSS 199
Cdd:PRK08376 162 AFRNDTwEAIEAGIKYMFVGSLASSMVLLGIALLYgQYGTLNMAYLAVKMSENPTVVAKIALALFIAglAMKSGAVPVHM 241
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 200 WLPAAM-AAPTPVSALVHSSTLvtAGVYLLIR-----FNIILSTSWLGQLMLLLSGLTMFMAGLGANFEFDLKKIIALST 273
Cdd:PRK08376 242 WLPDAYpAAPSSISAMLLVIKQ--AGLYALARvlfsiYGPAINLATVGWVIIILGCLTMFVGVAMAVVQKDVKRLLAYHS 319
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 274 LSQLGLMMSILSMGFLKL---------------AMFHLLTHALFKALLFMCAGAIIHNMnNSQDIRLMGGLSIHMPLTSA 338
Cdd:PRK08376 320 VSQIGYMLLGLGVGLAALgdpamasygeialagGIYHIVNHALYKALLFLTAGAVIYET-GTRNLNELGGLARTMPKTTI 398
                        330       340       350
                 ....*....|....*....|....*....|..
gi 667699636 339 CFNVSNLALCGMPFLAGFYSKDMILEIVSISN 370
Cdd:PRK08376 399 AFLIGAAAIVGLPPFNGFASKWLIYESSALFN 430
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
144-432 1.89e-21

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 97.46  E-value: 1.89e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 144 IGDVALLLSIAWMLNYGSWNYIFYLEIMQNEFEM---LMIGSLVMLAAMTKSAQIPFSSWLP-AAMAAPTPVSALvHSST 219
Cdd:COG1008  172 AGSLLMLVAILALYFLAGALTFDIAELAAAPLPLtaqLLLFLAFFIAFAVKVPMFPFHTWLPdAHVEAPTAGSVL-LAGV 250
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 220 LVTAGVYLLIRFNIIL---STSWLGQLMLLLSGLTMFMAGLGANFEFDLKKIIALSTLSQLGLM-MSILSMGFLKL--AM 293
Cdd:COG1008  251 LLKMGGYGLLRFALPLfpeASAYFAPLLAALGVIGIIYGALVALAQTDLKRLIAYSSVSHMGFVlLGIFALNPLGLqgAV 330
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 294 FHLLTHALFKALLFMCAGAIIHNMNnSQDIRLMGGLSIHMPLTSACFNVSNLALCGMPFLAGFYSKDMILeiVSISNVNM 373
Cdd:COG1008  331 LQMVSHGLITAALFLLVGVLYDRTH-TRDIADLGGLAKRMPVLAALFLLAALASLGLPGTSGFVGEFLVL--LGAFQVNP 407
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 667699636 374 FSFFLYYFSTGLTVSYSFRLVYYSMTGDLNcGSLNMLNDESWIMLRGMMGLLIMSIIGG 432
Cdd:COG1008  408 WLAILAALGLILTAAYLLWMYQRVFFGPLK-EELAELPDLNPRELAVLAPLAALILLLG 465
PRK08601 PRK08601
NADH dehydrogenase subunit 5; Validated
36-318 1.77e-20

NADH dehydrogenase subunit 5; Validated


Pssm-ID: 236310 [Multi-domain]  Cd Length: 509  Bit Score: 94.72  E-value: 1.77e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636  36 LVSLNSMSIVMTFLFDWMSLLFMSFVLMISSLVIFYSKEYMMNDNHINRFIMLVLMFVLSMMLLIISPNLISILLGWdGL 115
Cdd:PRK08601  56 LIGANGDVVVGPWHLDTLAWLMAFFVLTLGFIIQRFSVRYLLGDRSYRKYFALFTFTTGFASLAWLSGDLRLMALCW-GA 134
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 116 GLVSYCLVIYFQNI--KSYNAGMLTALSNRIGDVALLLSIAWM-LNYGSWNYIFYLE----IMQNEFEMLMIGSLVMLAA 188
Cdd:PRK08601 135 TLLGLTLLIGLNKGwkVAREAAKISGMLFLISWLALALAIVWLfIATGEWQLTSVLSnenlAQLGTWEKTGINLLLILAV 214
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 189 MTKSAQIPFSSWLPAAMAAPTPVSALVHSStLVTAGVYLLIRFNIILSTSWLGQLMLLLSGLTMFMaGLGANF-EFDLKK 267
Cdd:PRK08601 215 MIPAAQWPFQRWLIESAVAPTPVSAIMHAG-LVNAGGIMLTRFSPLFHDDIAQILLLIFASISVLI-GTGISLvQVDYKR 292
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|.
gi 667699636 268 IIALSTLSQLGLMMSILSMGFLKLAMFHLLTHALFKALLFMCAGAIIHNMN 318
Cdd:PRK08601 293 QLVGSTMAQMGFMLVQCALGAYSAAIIHLILHGLFKATLFLQSGSAVPRFN 343
PRK08377 PRK08377
NADH dehydrogenase subunit N; Validated
56-395 7.76e-20

NADH dehydrogenase subunit N; Validated


Pssm-ID: 181406 [Multi-domain]  Cd Length: 494  Bit Score: 92.91  E-value: 7.76e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636  56 LFMSFVLMISSLVIFYSKEyMMNDNHINRFIMLVLMFVLSMMLLIISPNLISILLGWDGLGLVSYCLVIYFQNIKSYNAG 135
Cdd:PRK08377  82 LFVLIIAIVSFIMSIFSLK-AVEVEPIDKYAMLFLLLMLGATGMIATGDIFNLFVFMEITAITAYALTAYNKTGEAAEAS 160
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 136 MLTALSNRIGDVALLLSIAwmLNYGSWNYIFYLEIMQNEFEM----LMIG-SLVMLAAMTKSAQIPFSSWLPAA-MAAPT 209
Cdd:PRK08377 161 MKYIVLGGIGSSFFLIGVA--LIYGATGTLNMAHIAQLAGTIdptvAQVGlALLIFGLAVEAELFPLNAWAPDAyQAAPH 238
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 210 PVSALVhSSTLVTAGVYLLIRFNIILS--TSWLG--QLMLLLSGLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILS 285
Cdd:PRK08377 239 PITVMF-SAFVVKAGLYAMARILYLMQnaNGWSSvlKLVIIMATLTVFFAELSALRQKNVKRMIAYSSIGQVGMIALALA 317
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 286 MGF---LKLAMFHLLTHALFKALLFMCAGAIIHNMNnSQDIRLMGGLSIHMPLTSACFNVSNLALCGMPFLAGFYSKDMI 362
Cdd:PRK08377 318 LGTqagVDAGVFHMINHAIVKALLFLAVGYVGITLG-GTEIEKFEGLGKRMPLTALALTIGALSTVGIPLFNVFWSKFRI 396
                        330       340       350
                 ....*....|....*....|....*....|...
gi 667699636 363 LeIVSISNVNMFSFFLYYFSTGLTVSYSFRLVY 395
Cdd:PRK08377 397 I-LAGLSAGYTWPVALVLGASVVEAVYYFRLIH 428
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
47-359 8.39e-20

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 92.49  E-value: 8.39e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636  47 TFLFDWMSLLFMSFVLMISSLVIFYSKEYMmNDNHINR--FIMLVLMFVLSMMLLIISPNLISILLGWDGLGLVSYCLV- 123
Cdd:COG1007   65 MFVVDGFALFFKLLILLAALLVLLLSRDYL-ERRGLLRgeFYALLLFATLGMMLMASANDLLTLFLGLELLSLSLYVLVa 143
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 124 IYFQNIKSYNAGM----LTALSNRIgdvaLLLSIAWMLNY-GSWNY---IFYLEIMQNEFEMLMIGSLVMLAAMT-KSAQ 194
Cdd:COG1007  144 FRRDDRRSSEAALkyflLGALSSGF----LLYGISLLYGAtGSLNLagiAAALAAGGANSPLLLLGLVLVLAGLAfKLSA 219
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 195 IPFSSWLP-AAMAAPTPVSALVhsSTLV-TAGVYLLIRFNII----LSTSWLgQLMLLLSGLTMFMAGLGANFEFDLKKI 268
Cdd:COG1007  220 VPFHMWTPdVYEGAPTPVTAFL--ATAPkIAAFAALLRLLVEafpgLAADWQ-LLLAVLAVLSMTVGNLAALAQTNVKRM 296
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 269 IALSTLSQLGLMMSILSMGF---LKLAMFHLLTHALFKALLFMCAGAIIHNMNNSQDIRLMGGLSIHMPLTSACFNVSNL 345
Cdd:COG1007  297 LAYSSIAHAGYLLLGLAAGTplgVSAALFYLLAYLFMNLGAFAVILLLSRKGGEAEEIEDLAGLARRSPLLALAMTIFLL 376
                        330
                 ....*....|....
gi 667699636 346 ALCGMPFLAGFYSK 359
Cdd:COG1007  377 SLAGIPPTAGFFGK 390
PRK12668 PRK12668
Na(+)/H(+) antiporter subunit D;
105-363 8.66e-19

Na(+)/H(+) antiporter subunit D;


Pssm-ID: 237168 [Multi-domain]  Cd Length: 581  Bit Score: 89.95  E-value: 8.66e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 105 LISILLGWDGLGLVSYCLVIYFQNIKSYNAGMLTALSNRIGDVALLLSIAWMLNY-GSWNYIFYLEIMQNEFEMLMIGSL 183
Cdd:PRK12668 115 LLTLFVFWELMAFTSTFLVWARGTKAAVRAGFRYLLVHVLGGVLLLAGILLHYAEtGSFAFGAIAGLGGTAAWLILIGFG 194
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 184 VmlaamtKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRfniilstSWLGQLMLLLSGLTMFMAGLG-ANFE 262
Cdd:PRK12668 195 V------NAAFPPLHAWLPDAYPEATVTGSVFLSAFTTKTAVYALAR-------AFPGTELLIYIGAAMAVYGVFfALLE 261
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 263 FDLKKIIALSTLSQLGLMMSILSMGF---LKLAMFHLLTHALFKALLFMCAGAIIHnMNNSQDIRLMGGLSIHMPLTSAC 339
Cdd:PRK12668 262 NDLRRLLSYHIVSQVGYMVAGIGIGTalaINGAVAHAFNHILYKGLLFMSAGAVLY-RTGTEKLTELGGLYRSMPLTALF 340
                        250       260
                 ....*....|....*....|....
gi 667699636 340 FNVSNLALCGMPFLAGFYSKDMIL 363
Cdd:PRK12668 341 CLVGALSISAFPLFSGFVSKSMII 364
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
47-359 1.16e-15

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 79.48  E-value: 1.16e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636  47 TFLFDWMSLLFMSFVLMISSLVIFYSKEYMmNDNHINRFIMLVLMFVLSMMLLIISPNLISILLGWDGLGLVSYCLVIY- 125
Cdd:PRK05777  68 MLVVDGFALFLKGLILLASLLALLLARPYL-EDRGRGEFYLLVLFALLGMMVMVSANDLLTLFLGLELLSLPLYALAALr 146
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 126 FQNIKSYNAGM----LTALSNRIgdvaLLLSIAwmLNYG-----SWNYIFYLEIMQNEFEMLMIGSLVMLAA--MTKSAQ 194
Cdd:PRK05777 147 RDRRRSLEAAIkyfvLGALASGF----LLYGMS--LLYGatgslSFAGIAKALADGSGNSLLLLFGLVFLLVglAFKLSA 220
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 195 IPFSSWLPAAM-AAPTPVSALVHSSTLVtAGVYLLIRF--NIILSTSWLGQLML-LLSGLTMFMAGLGANFEFDLKKIIA 270
Cdd:PRK05777 221 VPFHMWTPDVYeGAPTPVTAFLATAPKI-AAFAVLLRLlvVAFGGLSEDWQQVLaIIAIASMLVGNLAALSQTNIKRLLA 299
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 271 LSTLSQLGLMM---SILSMGFLKLAMFHLLTHALFKALLFMCAGAIIHNMNNSQDIRLMGGLSIHMPLTSACFNVSNLAL 347
Cdd:PRK05777 300 YSSIAHAGYLLvglAAGTAEGYSAVLFYLLAYLFMTLGAFGVISLLRRKGGEAESISDFAGLSKRSPLLAAVMTIFMLSL 379
                        330
                 ....*....|..
gi 667699636 348 CGMPFLAGFYSK 359
Cdd:PRK05777 380 AGIPPTAGFWGK 391
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
51-439 1.76e-15

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 79.21  E-value: 1.76e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636   51 DWMSLLFMSFVLMISSLVIFYSKEYMmnDNHINRFIMLVLMFVLSMMLLIISPNLISILLGWDGLGLVSYCLVIYFQNIK 130
Cdd:TIGR01972  76 DGISLLLVLLTALLTLLAILASWESI--QKRVKEFYALLLLLEAGVIGVFLALDLFLFYVFWEAMLIPMYLLIGVWGGPN 153
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636  131 SYNAGMLTALSNRIGDVALLLSIAWM--LNYGSWNYIFYLEIMQNEFEMLMIGSLVMLAAMTKSAQIPFSSWLPAAMA-A 207
Cdd:TIGR01972 154 RIYAAMKFFLYTLAGSLLMLLAILGLyfLGGGTFDLLELLNLPLPFGVQTWLFLAFFIAFAVKVPLFPLHTWLPDAHVeA 233
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636  208 PTPVSALVhSSTLVTAGVYLLIRFNIIL---STSWLGQLMLLLSGLTMFMAGLGANFEFDLKKIIALSTLSQLGL-MMSI 283
Cdd:TIGR01972 234 PTAGSVIL-AGVLLKMGTYGFLRFNLPLfpdASLYFAPVLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFvLLGI 312
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636  284 LSMGFLKL--AMFHLLTHALFKALLFMCAGAIIHNMnNSQDIRLMGGLSIHMPLTSACFNVSNLALCGMPFLAGFYSKDM 361
Cdd:TIGR01972 313 FSFNELGIsgAVFQMISHGLITAALFLLVGVLYERA-HTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGTSGFVGEFL 391
                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 667699636  362 ILeiVSISNVNMFSFFLYYFSTGLTVSYSFRLVYYSMTGDLNCGSLNMLNDESWIMLRGMMGLLIMSIIGGSMLNWLI 439
Cdd:TIGR01972 392 IL--LGSFKVNPVVAFLAALGIVLAAAYMLTLYKRVFFGELSNPEVAEFPDLNGREIAVLAPLVVLILFLGLYPNPLL 467
PRK08042 PRK08042
formate hydrogenlyase subunit 3; Reviewed
149-356 4.52e-15

formate hydrogenlyase subunit 3; Reviewed


Pssm-ID: 181206 [Multi-domain]  Cd Length: 593  Bit Score: 78.33  E-value: 4.52e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 149 LLLSIA-WML--NYGSWNyifyLEIMQNEFEMLMIGSLVMLAAMTK----SAQIPFSSWLPAAMA-APTPVSALVhSSTL 220
Cdd:PRK08042 148 LLLAIAcWLLwqRYGTLD----LRLLDMRMQQLPLGSDIWLLGVIGfgllAGIIPLHGWVPQAHAnASAPAAALF-STVV 222
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 221 VTAGVYLLIRFNIILSTS--WLGQLMLLLSGLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGFLKLA------ 292
Cdd:PRK08042 223 MKIGLLGILTLSLLGGNAplWWGVALLVLGMITAFVGGLYALMEHNIQRLLAYHTLENIGIILLGLGAGVTGIAleqpal 302
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 667699636 293 --------MFHLLTHALFKALLFMCAGAIIHNMNNsQDIRLMGGLSIHMPLTSACFNVSNLALCGMPFLAGF 356
Cdd:PRK08042 303 ialglvggLYHLLNHSLFKSVLFLGAGSVWFRTGH-RDIEKLGGIGKKMPVISIAMLVGLMAMAALPPLNGF 373
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
171-363 1.12e-14

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 76.53  E-value: 1.12e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 171 MQNEFEMLMIGSLVMLAAMTKSAQIPFSsWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFNIIL---STSWLGQLMLLL 247
Cdd:PRK12663 200 MGDTATLTTIALLFLLAFGMKAALFPFM-WLPAAYHTPNTEVAALFAALLTKVGIYALIRVFTLLfpqERELLHPLLATM 278
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 248 SGLTMFMAGLGANFEFDLKKIIALSTLSQLGLMM---SILSMGFLKLAMFHLLTHALFKALLFMCAGAIIHnMNNSQDIR 324
Cdd:PRK12663 279 AAITMVIGALGALAYKDIRRIAGYQVISSIGFILlglALGTPAGINGAIFYLVHDMVVKTALFLIAGSLVR-LTGYRSLQ 357
                        170       180       190
                 ....*....|....*....|....*....|....*....
gi 667699636 325 LMGGLSIHMPLTSACFNVSNLALCGMPFLAGFYSKDMIL 363
Cdd:PRK12663 358 YLGGLYRKEPLFGALFLILIFAIGGLPPFSGFWGKVLLV 396
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
49-432 1.40e-14

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 76.31  E-value: 1.40e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636  49 LFDWMSLLFMSFVLMISSLVIFYSKEYMMNDNHINRFIMLVLMFVLSMMLLIISPNLISILLGWDGLGLVSYCLVIYFQN 128
Cdd:PRK12662  76 ILSATMLVLVNFIAVMSVLYGIYPNRKEISVNKIPSFYSAFLLCLGGLLGILVSNDVFNIYVFLEISSISSYVLVAMGRD 155
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 129 IKSYNAGMLTALSNRIGDVALLLSIAWMLNY-GSWNYIFYLEIMQNEF--EMLMIGSL-VMLAAMTKSAQIPFSSWLPAA 204
Cdd:PRK12662 156 KKALVAAFEYLIIGTIGATFYLIGIGFLYAItGTLNMGDMFLIIQDLPtnRAIQIGVLfIMVGLFIKAALFPFHKWLIQA 235
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 205 MAAPTPVSALVHSSTLVTAGVYLLIRF-------NIILSTSWLGQLMLLLSGLTMFMAGLGANFEFDLKKIIALSTLSQL 277
Cdd:PRK12662 236 YSEAPSFISVFFSGTSTKVMIYLIIRIvydvfkaNFVFTTLPFNNVFMILAALAIVFGSVLAILSKDIKRIFAYSSISHI 315
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 278 G---LMMSILSMGFLKLAMFHLLTHALFKALLFMCAGAIIHNMNNSqDIRLMGGLSIHMPLTSACFNVSNLALCGMPFLA 354
Cdd:PRK12662 316 GyiiLAVSLNTYYGLAAAVAYIVNHSIVKSALFMVSGSISYHFGTT-KLEDCLNLWKSMPKITLAFVLLSLSLIGMPPTS 394
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 355 GFYSKDMILEIVSISNVnMFSFFLYYFSTGLTVSYSFRLV---YYSMTGDLNCgSLNMLNDESWIMLRGMMGLLIMSIIG 431
Cdd:PRK12662 395 GFVAKWYILDAFIKSNA-WIGLVVLLVGSGLSVIYVWKIVealYFESRMVESK-ANDKAFKTPNAMVLCIWIMAILSIIV 472

                 .
gi 667699636 432 G 432
Cdd:PRK12662 473 G 473
PRK07691 PRK07691
putative monovalent cation/H+ antiporter subunit D; Reviewed
180-364 2.71e-14

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 181085 [Multi-domain]  Cd Length: 496  Bit Score: 75.37  E-value: 2.71e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 180 IGSLVMLAAMTKSAQIPFSSWLPAA-MAAPTPVSALVhSSTLVTAGVYLLIR-FNIILS--TSWLGQLMLLLSGLTMFMA 255
Cdd:PRK07691 211 VAILFLFVFATKAGLFPLYFWLPGSyYAPPIAIAALF-GALLTKVGVYAIARtFTLFFShdTSFTHYLILILALLTIIFG 289
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 256 GLGANFEFDLKKIIALSTLSQLGLMMSILSMGF---LKLAMFHLLTHALFKALLFMCAGAIIHnMNNSQDIRLMGGLSIH 332
Cdd:PRK07691 290 VIGAVAYFDIKKIIIYNIMIAVGVILVGVAMMTesgMIGAIYYLIHDMIVKAALFLLIGIMIK-ITGTTDLKKMGGLIKR 368
                        170       180       190
                 ....*....|....*....|....*....|..
gi 667699636 333 MPLTSACFNVSNLALCGMPFLAGFYSKDMILE 364
Cdd:PRK07691 369 YPVLGWMFFIAALSLAGIPPLSGFYGKFFIVE 400
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
178-364 3.54e-13

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 71.92  E-value: 3.54e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 178 LMIGSLVMLAAMTKSAQIPFSSWLPAAM-AAPTPVSAlVHSSTLVTAGVYLLIRFNIILSTS-WLGQLMLLLSGLTMFMA 255
Cdd:PRK12665 209 TALFAVLLVAFGIKAAVFPLSFWLPDSYpTAPAPVTA-VFAGLLTKVGVYAIIRTHTLLFPGgGLDTLLMVVALLTMVVG 287
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 256 GLGANFEFDLKKIIALSTLSQLGLMMSILSMGF---LKLAMFHLLTHALFKALLFMCAGaIIHNMNNSQDIRLMGGLSIH 332
Cdd:PRK12665 288 ILGAIAQSDIKRLLSFTLVSHIGYMVFGIALSTvagLSGAIYYVAHHITVQTTLFLVVG-LIERQAGSSSLRRLGGLAKA 366
                        170       180       190
                 ....*....|....*....|....*....|..
gi 667699636 333 MPLTSACFNVSNLALCGMPFLAGFYSKDMILE 364
Cdd:PRK12665 367 SPLLAVLFFVPALNLGGIPPFSGFIGKVALLE 398
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
195-426 4.08e-13

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 71.77  E-value: 4.08e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 195 IPFSSWLPAAMA-APTPVSALvHSSTLVTAGVYLLIRFNIIL---STSWLGQLMLLLSGLTMFMAGLGANFEFDLKKIIA 270
Cdd:PRK05846 228 FPLHTWLPDAHVqAPTAGSVL-LAGILLKMGAYGLLRFSLPLfpdASHEFAPIIITLGVIAIIYGALVALAQTDIKKLIA 306
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 271 LSTLSQLG-LMMSILSMGFLKL--AMFHLLTHALFKALLFMCAGAIIHNMNnSQDIRLMGGLSIHMPLTSACFNVSNLAL 347
Cdd:PRK05846 307 YSSISHMGfVTLGIFAGNQLGIqgAIFQMISHGLSSAALFLLVGVLYDRLH-TRDIADYGGLAKVMPVLAAFFLFFAMAS 385
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 348 CGMPFLAGFYSKDMILeiVSISNVNMFSFFLYYFSTGLTVSYSFRLVYYSMTGDLNCGSLNM--LNDESWIMLRGMMGLL 425
Cdd:PRK05846 386 LGLPGTSGFVGEFLIL--LGSFQVNPVIAFIATTGLILAAVYSLWLYQRVMFGPVKNEVAKLkdLNGRELLILLPLVALL 463

                 .
gi 667699636 426 I 426
Cdd:PRK05846 464 L 464
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
190-363 4.49e-13

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 71.50  E-value: 4.49e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 190 TKSAQIPFSSWLPAAMA-APTPVSALVhSSTLVTAGVYLLIRFNIILS----TSWLGQLMLLLSGLTMFMAGLGANFEFD 264
Cdd:PRK06458 226 TKVGLFPMHAWLPDAHSeAPSPVSALL-SGVLLNVALYAVLRYYILIDaaigSDFPGRLLLIFGLLSVLVAAFFLLRQRD 304
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 265 LKKIIALSTLSQLGLMMSILSMG---FLKLAMFHLLTHALFKALLFmCAGAIIHNMNNSQDIRLMGGLSIHMPLTSACFN 341
Cdd:PRK06458 305 IKRLFAYSSIEHMGLIAFALGIGgplGIFAALLHMLNHSLTKSAIF-FASGNVLQKYGTRDINVIRGLLKVSPLTGWGLM 383
                        170       180
                 ....*....|....*....|..
gi 667699636 342 VSNLALCGMPFLAGFYSKDMIL 363
Cdd:PRK06458 384 LGALAIAGMPPFGVFISEFLIL 405
ndhB CHL00049
NADH dehydrogenase subunit 2
5-359 5.67e-11

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 65.03  E-value: 5.67e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636   5 SFVNLISMSLSCFLLSLYFLLndmiyfIEWELVSLNSMSivMTFLFDWMSLLFMSFVLMISSLVIFYSKEYMMNDN-HIN 83
Cdd:CHL00049  40 DIPWLYFISSTSLVMSITALL------FQWREEPMISFS--GNFQTNNFNEIFQFLILLCSTLCIPLSVEYIECTEmAIT 111
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636  84 RFIMLVLMFVLSMMLLIISPNLISILLGWDGLGLVSYCLVIYF-QNIKSYNAGMLTALSNRIGDVALLLSIAWMlnYG-S 161
Cdd:CHL00049 112 EFLLFVLTATLGGMFLCGANDLITIFVALECLSLCSYLLSGYTkKDVRSNEATMKYLLMGGASSSILVYGFSWL--YGlS 189
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 162 WNYIFYLEIMQNEFEMLMIGSLVMLAAMT--------KSAQIPFSSWLPAAM-AAPTPVSALVhSSTLVTAGVYLLIR-F 231
Cdd:CHL00049 190 GGEIELQEIVNGLINTQMYNSPGISIALIfitvgigfKLSLAPFHQWTPDVYeGSPTPVVAFL-SVTSKVAASALATRiF 268
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 232 NII---LSTSWlgQLML-LLSGLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGFLKLAMFHLLTHALFkaLLF 307
Cdd:CHL00049 269 DIPfyfSSNEW--HLLLeILAILSMILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVGDSNDGYASMITYMLF--YIF 344
                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 667699636 308 MCAGA----IIHNMNNSQD-IRLMGGLSIHMPLTSACFNVSNLALCGMPFLAGFYSK 359
Cdd:CHL00049 345 MNLGTfaciVLFGLRTGTDnIRDYAGLYTKDPFLALSLALCLLSLGGIPPLAGFFGK 401
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
182-363 1.02e-10

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 64.01  E-value: 1.02e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 182 SLVMLAAMTKSAQIPFSSWLPAAMA-APTPVSALVhSSTLVTAGVYLLIRFNIILSTSWLG-QLMLLLSGLTMFMAGLGA 259
Cdd:PRK08676 210 LFIFIGFLAKSGLVPFHTWLPAAYAkAPSVVSALL-SGTVLNIGIYGILRLSALLRQSGAAeQFSNVLIGLGIFSIAVAA 288
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 260 NFEF---DLKKIIALSTLSQLGLMMSILSMGF---LKLAMFHLLTHALFKALLFMCAGaIIHNMNNSQDIRLMGGLSIHM 333
Cdd:PRK08676 289 FSMLsqrNLKKLIAFSSIEHMGLMLLGIGIGTplaLFWMLFHMLAHSLVKSGLFFSAG-ILHRQYRSDRFDRIFDVFRLQ 367
                        170       180       190
                 ....*....|....*....|....*....|
gi 667699636 334 PLTSACFNVSNLALCGMPFLAGFYSKDMIL 363
Cdd:PRK08676 368 PVAAWGVILGSAAIIGMPPFPLFLSKFFIL 397
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
39-364 3.43e-09

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 59.27  E-value: 3.43e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636  39 LNSMSIVMTFLFDWMSLLFMSFVLMISSLVIFyskEYMMNDNHINRFIMLVLMFVLSMMLLIISPNLISILLGWDGLGLV 118
Cdd:PRK06277  59 VNGYHSGITYLFNPAKQIIIFVLSLIASLVLI---TGLGEKKSSGLYVFLMLMGLASVSAIVLADDIFNLYVFFEIAAIV 135
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 119 SYCLVIYFQNIKSYNAGMLTALSNRIGDVALLLSIAWMLNY-GSWNY--IFYLEIMQNEFEMLMIGSLVMLAAMTKSAQI 195
Cdd:PRK06277 136 QVGLVIASGTEEAYKAALKYMILGNVAGSILLLGIGFLLAStGTLNItdIHNALLVNPTSPVIYGGLLLLIFGLLYGSGL 215
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 196 PFSSWLPAAMAAPTP--VSALVHSSTLVTAGVYLLIRFNIILSTSWLGQ---LMLLLSGLTMFMAGLGANFEFDLKKIIA 270
Cdd:PRK06277 216 PPFHTIKSDIYAKAKpfGSALLQTFSKFVLVALMLVIFKLFGGLSYFPSaqgVLIALSVLAMVFGVVMALLQTDYKRLLA 295
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 271 LSTLSQLGLMMSILSMGF---LKLAMFHLLTHALFKALLFMCAGaIIHNMNNSQDIRLMGGLSIHMPLTSACFNVSNLAL 347
Cdd:PRK06277 296 YHAISQGGYVAAGLALGTplgIVAGIFHAINHVIYKSALFLGAG-IVSYRTKTSNLRKLGGLLPVMPVVAFMVLCAKLAI 374
                        330
                 ....*....|....*..
gi 667699636 348 CGMPFLAGFYSKDMILE 364
Cdd:PRK06277 375 SGVPPFNGFQSKLMLAQ 391
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
191-362 5.49e-08

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 55.42  E-value: 5.49e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 191 KSAQIPFSSWLPAAMA-APTPVSALVhSSTLVTAGVYLLIRFNI-ILSTS--WLGQLMLLLSGLTMFMAGLGANFEFDLK 266
Cdd:PRK12561 198 KLPIFPLHTWLPDAHGeASAPVSMIL-AGVLLKMGGYALIRFNVqMLPDAhvYFAPALAILGVVNIIYGALNAFAQDNVK 276
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 267 KIIALSTLSQLGLMM----SILSMGfLKLAMFHLLTHALFKALLFMCAGaIIHNMNNSQDIRLMGGLSIHMPLTSACFNV 342
Cdd:PRK12561 277 RRLAYSSVSHMGFVLlgiaAFTDLG-ISGAMLQMISHGLIAAALFFLTG-VTYERTHTLSIPNMGGLAKVMPKTFALFTA 354
                        170       180
                 ....*....|....*....|
gi 667699636 343 SNLALCGMPFLAGFYSKDMI 362
Cdd:PRK12561 355 SSMASLALPGMSGFVSELTV 374
PRK06459 PRK06459
hydrogenase 4 subunit B; Validated
57-311 8.08e-07

hydrogenase 4 subunit B; Validated


Pssm-ID: 235806 [Multi-domain]  Cd Length: 585  Bit Score: 51.71  E-value: 8.08e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636  57 FMSFVLMISSLVIFYSKEYMMNDNHINRFI-MLVLMFVLSMMLLIISPNLISILLGWDGLGLVSYcLVIYFQNIKSYNAG 135
Cdd:PRK06459  45 VLSFFSIISTIVWILASLYSIEYDHYGKWLsSLYILTILGMAIVLTSDNYLLFLAGWEIMTIPSY-VAIALTKKNKRPAF 123
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 136 MLTALSNrigdvallLSIAWMLNYGSWNYIFYLEIMQNEFEMLMIGSLVMLAAMTKSAQIPF--SSWLPAAMA-APTPVS 212
Cdd:PRK06459 124 VFMAFGE--------LSTVLILAGFAWAFIISGTTNFSYLPSPVPLILASFGFIIKMGMMPFlvSEWLPIAHGnAPSNFS 195
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 213 AlVHSSTLVTAGVYLLIRFNIILSTS---WLGQLMLLLSGLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSM--- 286
Cdd:PRK06459 196 A-ILSATMTLMGVYGILKMTILTQTIpigYFGLTILAIGAFSILFGALYAYVSENVKGLLAFSTIENNGAILVALGLymv 274
                        250       260       270
                 ....*....|....*....|....*....|....*
gi 667699636 287 ----------GFLKLAMFHLLTHALFKALLFMCAG 311
Cdd:PRK06459 275 tkqlitsiehFSLITVILYSFAHSVAKTGLFLSSG 309
PRK02546 PRK02546
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
175-362 1.87e-06

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 235050 [Multi-domain]  Cd Length: 525  Bit Score: 50.48  E-value: 1.87e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 175 FEMLMIGSLvMLAAMTKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFNIIL---STSWLGQLMLLLSGLT 251
Cdd:PRK02546 211 FQLLCYAGL-LIAYGVKLPIVPLHTWLPDAHGEATAPVHMLLAGILLKMGGYALLRMNAGMlpdAHAQFAPLLIVLGVVN 289
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 252 MFMAGLGANFEFDLKKIIALSTLSQLGLMM----SILSMGfLKLAMFHLLTHALFKALLFMCAGAIiHNMNNSQDIRLMG 327
Cdd:PRK02546 290 IIYAALTSFAQRNLKRKIAYSSISHMGFVLigigSFTDLG-TSGAMLQMISHGLIGASLFFLVGAT-YDRTHTLMLDEMG 367
                        170       180       190
                 ....*....|....*....|....*....|....*
gi 667699636 328 GLSIHMPLTSACFNVSNLALCGMPFLAGFYSKDMI 362
Cdd:PRK02546 368 GVGQKMRKMFAMWTACSLASLALPGMSGFVAELMV 402
Proton_antipo_N pfam00662
NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus; This sub-family represents an ...
37-85 2.63e-06

NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus; This sub-family represents an amino terminal extension of pfam00361. Only NADH-Ubiquinone chain 5 and eubacterial chain L are in this family. This sub-family is part of complex I which catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane.


Pssm-ID: 459895 [Multi-domain]  Cd Length: 51  Bit Score: 44.34  E-value: 2.63e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 667699636   37 VSLNSMSIVMTFLFDWMSLLFMSFVLMISSLVIFYSKEYMMNDNHINRF 85
Cdd:pfam00662   2 LSVGDLSISFGFLIDPLSALMLLVVTGVSLLVHIYSIGYMHHDPGYARF 50
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
46-391 2.69e-06

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 50.31  E-value: 2.69e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636  46 MTFLFDWMSLLFM---SFVLMISSLVIFYSKEYMMNDNHInrfIMLVLMFVLSMMLLIISPNLISILlgWDGLGLVSYCL 122
Cdd:MTH00226  96 LVFAVDGISIYFIiltGFIVPCSILISWHSVKYLTKSFLI---CMLILEFLLYAVFSVLDIFMFYIL--FEGVLIPMYLI 170
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 123 V-IYFQNIKSYNAGMLTALSNRIGDVALLLSIAWMLN-YGSWNYIFYLE----IMQNEFEMLMIGslVMLAAMTKSAQIP 196
Cdd:MTH00226 171 LgIWGSREEKMQAAYYFFFYTLIGSVLMLLCLFSLYNiHGTTDYLTLAScshvVSEQTQKWIFLG--IFLAMAVKIPIFP 248
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 197 FSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFN---IILSTSWLGQLMLLLSGLTMFMAGLGANFEFDLKKIIALST 273
Cdd:MTH00226 249 FHIWLPKAHVEAPVAGSVLLAGILLKLGGYGLVRLSwpiLPLGAQNLAPAVIAMGIVGIVYGSFATCRQIDVKRLVAYSS 328
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 274 LSQLGLM-MSILSMGFLKL--AMFHLLTHALFKALLFMCAgAIIHNMNNSQDIRLMGGLSIHMPLTSACFNVSNLALCGM 350
Cdd:MTH00226 329 VAHMGLVsITLVTHDIIGLtgSIFIMLAHGIVSSLLFILV-TILYDRHHTRLIKYYRGLSITMPIWGTIMIVTSLANVAV 407
                        330       340       350       360
                 ....*....|....*....|....*....|....*....|.
gi 667699636 351 PFLAGFYSKdmILEIVSISNVNMFSFFLYYFSTGLTVSYSF 391
Cdd:MTH00226 408 PPSGNFIGE--YLSILSSFNWNPIIGVFVCSGVILSAVYSF 446
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
40-359 1.05e-05

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 48.12  E-value: 1.05e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636  40 NSMSIVMTFLFDWMSLLFMSFVLMISSLVIFYSKEYM-MNDNHINRFIMLVLMFVLSMMLLIISPNLISILLGWDGLGLV 118
Cdd:PRK02504  66 NPISFLGSFNADNLSIAFRAIIALSTLVTLLMSWRYVeQSGTPLGEFAAILLTATLGGMFLSGATELVMIFISLETLSIA 145
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 119 SYCLVIYFQNIKSYNAGMLTALSNRIGDVALLL---SIAWMLNYGSWNYIFYLEIMQNEFEMLMIGSLVMLAAMT--KSA 193
Cdd:PRK02504 146 SYLLTGYMKRDPRSNEAALKYLLIGAASSAIFLygsSLLYGLSGGSTQLSAIALALITSPSLGLALALVFVIAGIafKIS 225
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 194 QIPFSSWLPAAM-AAPTPVSALVhSSTLVTAGVYLLIRFNIILSTSWLGQLMLL---LSGLTMFMAGLGANFEFDLKKII 269
Cdd:PRK02504 226 AVPFHQWTPDVYeGSPTPVVAFL-SVGSKAAGFALAIRLLVTAFPSFDEQWKLLftaLAILSMVLGNVVALAQTSMKRML 304
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 270 ALSTLSQLGLMMSILSMGF---LKLAMFHLLTHalfkalLFMCAGA----IIHNMNNSQD-IRLMGGLSIHMPLTSACFN 341
Cdd:PRK02504 305 AYSSIGQAGFVMIGLVAGTeagYASMVFYLLAY------LFMNLGAfacvILFSLRTGTDqISDYAGLYQKDPLLTLGLS 378
                        330
                 ....*....|....*...
gi 667699636 342 VSNLALCGMPFLAGFYSK 359
Cdd:PRK02504 379 LCLLSLGGIPPLAGFFGK 396
ND4 MTH00217
NADH dehydrogenase subunit 4; Provisional
144-356 6.80e-05

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214462 [Multi-domain]  Cd Length: 482  Bit Score: 45.43  E-value: 6.80e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 144 IGDVALLLSIAWMLNY-GSWNY--IFYLEIMQNEFEMLMIGSLVMLAamTKSAQIPFSSWLPAAMAAPTPVSALVHSSTL 220
Cdd:MTH00217 171 IGSVFMLLGIFTLYSYaGTTDYqaLCCLKIEKELQYFIFLGFFLSLA--IKIPKIPFHIWLPQAHVEAPVAGSVILAGVL 248
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 221 VTAGVYLLIRFNIIL---STSWLGQLMLLLSGLTMFMAGLGANFEFDLKKIIALSTLSQLGLM-MSILSMGFLKL--AMF 294
Cdd:MTH00217 249 LKLGGYGFIRFSWPLlpeASEYFSPLIQTLSLLAIIYGSLTTCRQVDLKRIIAYSSVAHMGLVtLGIFSHTIQGLvaAIF 328
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 667699636 295 HLLTHALFKALLFMcAGAIIHNMNNSQDIRLMGGLSIHMPLTSACFNVSNLALCGMPFLAGF 356
Cdd:MTH00217 329 LMLAHGLVSSALFI-AVTFLYERHHTRLIKYYRGMVITMPLFGILMLLLVLANASIPLSCNF 389
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
177-362 7.78e-05

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 45.46  E-value: 7.78e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 177 MLMIGSLVMLAamTKSAQIPFSSWLP-AAMAAPTPVSALVhSSTLVTAGVYLLIRFNI-ILSTSW--LGQLMLLLSGLTM 252
Cdd:PRK06473 206 LLLAPILVGFG--IKIPLVPFHTWLPdAHVEASTPVSVLL-AGVLLKLGTYGLLRFGVgLFPEAWvyLAPWLATWAVVSV 282
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 253 FMAGLGANFEFDLKKIIALSTLSQLGLMM---------SILSmgflklAMFHLLTHALFKALLFMCAGaIIHNMNNSQDI 323
Cdd:PRK06473 283 LYGASCAIAQKDMKKMVAYSSIGHMGYILlaaaaatplSILA------AVFQMISHGLISALLFLLVG-VVYKKTGSRDV 355
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|..
gi 667699636 324 RLMGGL---SIHMPLTSACFNVSNLALCGMPFLAGFYSKDMI 362
Cdd:PRK06473 356 DVLRGLlnpERGLPITGSLMILGVMASAGIPGMVGFIAEFLV 397
ND4 MTH00206
NADH dehydrogenase subunit 4; Provisional
4-411 7.91e-05

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214458 [Multi-domain]  Cd Length: 450  Bit Score: 45.32  E-value: 7.91e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636   4 ISFVNLISMSLSCFLLSLYFLLNDMIYFIEWELVSLNSMSIVMTFL-FDWMSLLFMSFVLMISSLVIFYSKEYMMNDNHI 82
Cdd:MTH00206  10 LLMTILSKKKWLWRSTTFFSFLIALLFLLWFKWSSEVGWSFSNLYLsYDPLSSPLVILSCWLLPLMFLASQNHMKNEPIN 89
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636  83 NR--FIMLVLMFVLSMMLLIISPNLISILLGWDGLGLVSYCLVIYFQNIKS-YNAGMLTALSNRIGDVALLLSIAWMLNY 159
Cdd:MTH00206  90 RQriYITLLIVLQLFLILFFSSSNLLLFYILFEASLIPTLLLITRWGNQKErLNAGYYFLFYTLIGSLPLLIALLFLQNS 169
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 160 GSWNYIFYLEIMQNEFEMLMIGSLVMLAA-MTKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFNIIL--S 236
Cdd:MTH00206 170 LGSLSLYILYFSKLTTWNNNLWWLACILAfLVKLPLYGVHLWLPKAHVEAPVAGSMVLAGVLLKLGGYGMMRIILILgpS 249
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 237 TSWLGQLMLLLSGLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGF---LKLAMFHLLTHALFKALLFmCAGAI 313
Cdd:MTH00206 250 TKLSSYFFIILGLWGSIMTSSICLRQTDLKSLIAYSSVSHMSLVTAGILSGSpwgFKGALLLMIAHGLVSSALF-CLANL 328
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 314 IHNMNNSQDIRLMGGLSIHMPLTSACFNVSNLALCGMPFLAGFYSKDMIleIVSISNVNMFSFFLYYFSTGLTVSYSFRL 393
Cdd:MTH00206 329 LYERSHTRTILGNRGLQMILPLLSFWWLLFFLANLGLPPFPNLFGELLI--ITSLFSWSNFTLPLLGLGFLFTAIYSLYM 406
                        410
                 ....*....|....*...
gi 667699636 394 VYYSMTGDLNCGSLNMLN 411
Cdd:MTH00206 407 FVMTQHGKTPNHLLSLSP 424
ndhD CHL00011
NADH dehydrogenase subunit 4
145-362 1.90e-04

NADH dehydrogenase subunit 4


Pssm-ID: 176954 [Multi-domain]  Cd Length: 498  Bit Score: 44.17  E-value: 1.90e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 145 GDVALLLSIAWMLNYGSWNYIFYLEIMQNE-----FEMLM-IGSLVMLAAmtKSAQIPFSSWLPAAMAAPTPVSALVHSS 218
Cdd:CHL00011 174 GSIFLLIGVLGMGLYGSNEPTLNFETLANQsypvaLEILFyIGFLIAYAV--KLPIIPLHTWLPDTHGEAHYSTCMLLAG 251
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 219 TLVTAGVYLLIRFNIILST---SWLGQLMLLLSGLTMFMAGLGANFEFDLKKIIALSTLSQLGLMM----SILSMGfLKL 291
Cdd:CHL00011 252 ILLKMGAYGLIRINMELLPhahSIFSPWLVIVGAIQIIYAASTSLGQRNLKKRIAYSSVSHMGFIIigigSITDTG-LNG 330
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 667699636 292 AMFHLLTHALFKALLFMCAGAiihnmnnSQD-IRL-----MGGLSIHMPLTSACFNVSNLALCGMPFLAGFYSKDMI 362
Cdd:CHL00011 331 AILQIISHGFIGAALFFLAGT-------SYDrIRLvyldeMGGIAIPMPKIFTMFSSFSMASLALPGMSGFVAELIV 400
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
195-364 2.34e-04

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 43.93  E-value: 2.34e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 195 IPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFNIIL---STSWLGQLMLLLSGLTMFMAGLGANFEFDLKKIIAL 271
Cdd:PRK07363 222 VPLHTWLPDAYTEASPAVAILLGGVLAKLGTYGLLRFGLQLfpqTWSLVAPGLAIIGTISVIYGALSAIAQKDIKRMVAY 301
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 272 STLSQLGLMMSILSMGF---LKLAMFHLLTHALFKALLFMCAGaIIHNMNNSQDIRLMGGLSI---HMPLTSACFNVSNL 345
Cdd:PRK07363 302 SSIGHMGYILVAAAAGTqlsLLGAVAQMISHGLILALLFHLVG-IVERKVGTRDLDVLNGLMNpirGLPLTSALLVLAGM 380
                        170
                 ....*....|....*....
gi 667699636 346 ALCGMPFLAGFYSKDMILE 364
Cdd:PRK07363 381 ASAGIPGLVGFVAEFIVFQ 399
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
183-364 4.04e-04

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 42.89  E-value: 4.04e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 183 LVMLAAMTKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFNIILSTSwlgqLMLLLSGLTMFMAGLGANFE 262
Cdd:MTH00112  97 LLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPT----LLLTLAILSTLIGGWGGLNQ 172
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 263 FDLKKIIALSTLSQLGLMMSILSMGfLKLAMFHLLTHALFKALLFMcagaiIHNMNNSQDIRLMGGLSIHMPLTSACFNV 342
Cdd:MTH00112 173 TQLRKIMAFSSIAHLGWMIAIITYS-PKLTLLTFYIYILMTTPMFL-----TLNTTSTKTLKDMMTSWTKSPTLNTTLML 246
                        170       180
                 ....*....|....*....|..
gi 667699636 343 SNLALCGMPFLAGFYSKDMILE 364
Cdd:MTH00112 247 TLLSLAGLPPLTGFMPKWLILQ 268
ND4 MTH00204
NADH dehydrogenase subunit 4; Provisional
144-358 4.10e-04

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 164750 [Multi-domain]  Cd Length: 485  Bit Score: 43.13  E-value: 4.10e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 144 IGDVALLLSIAWML-NYGSWNYIFYLEIMQNEFEMLMIGSLVMLAAMTKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVT 222
Cdd:MTH00204 174 AGSVFMLLGIFQLYsITGTTDYQILLNIKLPLSIQKWLLVGFFLSLAVKIPQIPFHIWLPQAHVEAPVAGSVILAGILLK 253
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 223 AGVYLLIRFNIIL---STSWLGQLMLLLSGLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSIL---SMGFLKLAMFHL 296
Cdd:MTH00204 254 LGGYGFLRFSWPLfpaASEYFAPLIVMLSVIAVIYGSLTTCRQVDFKRLIAYSSVAHMGLVPLGLfthTIEGLVAAVFLM 333
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 667699636 297 LTHALFKALLFMcAGAIIHNMNNSQDIRLMGGLSIHMPLTSACFNVSNLALCGMP----FLAGFYS 358
Cdd:MTH00204 334 LAHGFVSSALFI-AVTFLYERHHTRLIKYYRGLTLTMPLFVIIMLVLSLANMGFPlscnFVGEFFS 398
ND4 MTH00127
NADH dehydrogenase subunit 4; Provisional
185-390 5.21e-04

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177186 [Multi-domain]  Cd Length: 459  Bit Score: 42.64  E-value: 5.21e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 185 MLAAMTKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFNIILS--TSWLGQLMLLLSGLTMFMAGLGANFE 262
Cdd:MTH00127 201 LLAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRMMVMLDplTKELSYPFIILALWGIIMTGSICLRQ 280
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 263 FDLKKIIALSTLSQLGLMMS---ILSMGFLKLAMFHLLTHALFKALLFmCAGAIIHNMNNSQDIRLMGGLSIHMPLTSAC 339
Cdd:MTH00127 281 TDLKSLIAYSSVSHMGLVAGgilIQTPWGFTGALILMIAHGLTSSALF-CLANTNYERTHSRTMLLARGLQMILPLMATW 359
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|.
gi 667699636 340 FNVSNLALCGMPFLAGFYSKDMIleIVSISNVNMFSFFLYYFSTGLTVSYS 390
Cdd:MTH00127 360 WFIASLANLALPPLPNLMGELMI--ITSLFNWSPWTLALTGLGTLITAGYS 408
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
91-419 9.91e-04

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 41.55  E-value: 9.91e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636  91 MFVLSMMLLIISPNLISILLGWDGLGLVSYCLVIYFQN-IKSYNAGM----LTALSNR--IGDVALLLSIAWMLNYGSWN 163
Cdd:MTH00196   1 MVALGILCLISSSNWLSVYLAIELQTLSLFILIAQNRGsGYSAEAGLkyfvLGALSSGlfLFGCALLCGTTGGLHLSYIN 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 164 YIFYLEIMQNEFEMLMIGSLVMLAAMTKSAQIPFSSWLPAAM-AAPTPVSALVhsSTLVTAGVyllirFNIILSTSWLGQ 242
Cdd:MTH00196  81 LVLNSGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYeGAPTKTTALL--AIVPKLGI-----FSILVSIGLNVN 153
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 243 LMLLLSGLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGFLKLAMFHLLTHALFkALLFMCAGAIIHNMNNSQD 322
Cdd:MTH00196 154 ILLIGGLFSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIGSFESIQASLVYLFIY-IIMSICVFSIILALNVYKN 232
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 323 -IRLMGGLSIHMPLTSACFNVSNLALCGMPFLAGFYSKDMILeIVSISNVNMFSFFLYYFSTGLTVSYSFRLV--YYSMT 399
Cdd:MTH00196 233 lIIEFSGLSRRLPILAITLALTFLSIAGIPPLVGFLGKWLIL-LSGVVYQYYLIFLLAVFCSVIAGVYYVRIVkiLFFQA 311
                        330       340
                 ....*....|....*....|
gi 667699636 400 GDLNCGSLNMLNDESWIMLR 419
Cdd:MTH00196 312 NSFLLISTKILKKENKINLR 331
PRK12664 PRK12664
putative monovalent cation/H+ antiporter subunit D; Reviewed
12-397 1.94e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237164 [Multi-domain]  Cd Length: 527  Bit Score: 40.87  E-value: 1.94e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636  12 MSLSCFLLSLYFLLNDMIyFIEWELVSLNSMSIVmtFLFDWMSLLFMSFVLMISSLVIFYSKeymmndNHINRFIMLVLM 91
Cdd:PRK12664   1 MTMVLYAISLYGFFFGLI-FIVLPLLLYDWSEPV--YNLDLVLFIVLSFSLALIFLYILPIK------NMRFSEMLCYLL 71
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636  92 FVLSMMLLIISPNLISILLGWDGLGLVSYCLVIYFQNIKSYNAGMLTALSNRIGDVALLLSIAWMLNYGSWNYIFYLeim 171
Cdd:PRK12664  72 YYISSIAAISSSSLTLVVIGFEFMALSALMIIAAGCPGGNIGAFIHYACVHFFSGVLLLVGASGQAQNGQYTGYCKL--- 148
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 172 qnefemlmigsLVMLAAMTKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFniilstsWLGQLMLLLSGL- 250
Cdd:PRK12664 149 -----------LFMLGLLINCACFPASSWVVDAYPAASNFGIIVLSLFTTKVAALVLLLF-------FSGEEILLFLGIi 210
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699636 251 TMFMAGLGANFEFDLKKIIALSTLSQLGLMM-----SILSMGFLKLAMFHLLTHALFKALLFMCAGAIIhNMNNSQDIRL 325
Cdd:PRK12664 211 TAIYGIIFASLEQNIRRLLCYNVVGQMGLLIiaigfSGSSGVAIGILILQIVLSVVYQTLLFMVADSVI-NRTRKFNLNR 289
                        330       340       350       360       370       380       390
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 667699636 326 MGGLsIHMPLTSACFNVSNLALCGMPFLAGFYSKDMILEIVSISNVN--MFSFFLYYFSTGLTVSYSFRLVYYS 397
Cdd:PRK12664 290 VGGL-FKMSLEAMCCIIAILNMGAFPGTAGFVSKSLITHSIDTAGLTlvLYKKLFLICSLLLFASVGLKFFWYA 362
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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