|
Name |
Accession |
Description |
Interval |
E-value |
| ND2 |
MTH00160 |
NADH dehydrogenase subunit 2; Provisional |
1-340 |
2.70e-97 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214442 [Multi-domain] Cd Length: 335 Bit Score: 291.34 E-value: 2.70e-97
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699629 1 MFNNSSKILFITIMIIGTLITVTSNSWLGAWMGLEINLLSFIPLLSDNNNLMSTEASLKYFLTQVLASTVLLFSSILLML 80
Cdd:MTH00160 1 MMMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699629 81 KNNMNNeineSFTSMIIMSALLLKSGAAPFHFWFPNMMEGLTWMNALMLMTWQKIAPLMLISYLNIKYLLLISVILSVII 160
Cdd:MTH00160 81 NLMLFN----NISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLINNNFIIIIIILSAII 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699629 161 GAIGGLNQTSLRKLMAFSSINHLGWMLSSLMISESIWLIYFFFYSFLSFVLTFMFNIFKLFHLNQLFSWFVNSKILKFTL 240
Cdd:MTH00160 157 GAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLL 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699629 241 FMNFLSLGGLPPFLGFLPKWLVIQQLTLCNQYFMLTLMMMSTLITLFFYLRICYSAFMMNYFENNWIMKMNMNSINYNMy 320
Cdd:MTH00160 237 FLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKKKKNKFSLIL- 315
|
330 340
....*....|....*....|
gi 667699629 321 MIMTFFSIFGLFLISLFYFM 340
Cdd:MTH00160 316 NFLSFISLFGLILSSLLFLL 335
|
|
| Proton_antipo_M |
pfam00361 |
Proton-conducting membrane transporter; This is a family of membrane transporters that ... |
24-282 |
8.72e-30 |
|
Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.
Pssm-ID: 425636 [Multi-domain] Cd Length: 291 Bit Score: 115.10 E-value: 8.72e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699629 24 SNSWLGAWMGLEINLLSFIPLLSDN-NNLMSTEASLKYFLTQVLASTVLLFSSI-------------LLMLKNNMNNEIN 89
Cdd:pfam00361 1 ANDLLLMYLGWEAVLLPSYLLIGYWgKSPRSSEAGMKYFLLTLLGSSILLFGISlmynytgtlsfdeLSKALTGGLNSSG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699629 90 ESFTSMIIMSALLLKSGAAPFHFWFPNMMEGLTWMN-ALMLMTWQKIAPLMLI--------SYLNIKYLLLISVILSVII 160
Cdd:pfam00361 81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVsALLAATLVKAGGYGLIrrsllylpSSPFIQQILLILAIISMLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699629 161 GAIGGLNQTSLRKLMAFSSINHLGWMLSSLMISESIWLIYFFFYSFL---------SFVLTFMFNIFKLFHLNQLFSWFV 231
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYGIQAAIFHLLThglfsaglfLCAGSVIYRRVHTRNIRDYGGLAK 240
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 667699629 232 NSKILKFTLFMNFLSLGGLPPFLGFLPKWLVIQQLTLCNQYFMLTLMMMST 282
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
|
|
| NDH_I_N |
TIGR01770 |
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ... |
2-338 |
1.60e-20 |
|
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]
Pssm-ID: 273795 [Multi-domain] Cd Length: 468 Bit Score: 91.93 E-value: 1.60e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699629 2 FNNSSKILFITIMIIGTLITVTSNSWLGAWMGLEINLLSFIPLLS-DNNNLMSTEASLKYFLTQVLASTVLLF------- 73
Cdd:TIGR01770 99 INKFEFYILLLFALLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFgisliyg 178
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699629 74 -------SSILLMLKNNMNNEINESFTSMIIMSALLLKSGAAPFHFWFPNMMEGLTWMNALMLMTWQKIAPLMLI----- 141
Cdd:TIGR01770 179 ftgslnfEDLLLFLSNGMLNISLLLLGIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFlrlfl 258
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699629 142 -----SYLNIKYLLLISVILSVIIGAIGGLNQTSLRKLMAFSSINHLGWMLSSLMISESI--------WLIYFFFYSFLS 208
Cdd:TIGR01770 259 yilfgFSEAWQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEgikavlfyIFIYALMSLGAF 338
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699629 209 FVLTFMFNI--FKLFHLNQLFSWFVNSKILKFTLFMNFLSLGGLPPFLGFLPKWLVIQQLTLCNQYFMLTLMMMSTLITL 286
Cdd:TIGR01770 339 GVLSLLRSYkdEWIEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGA 418
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|..
gi 667699629 287 FFYLRICYSAFMMNyfENNWIMKMNMNSINYNMYMIMTFFSIFGLFLISLFY 338
Cdd:TIGR01770 419 FYYLRVVKVMYFDK--PERRIPSNPQSKAQSLLLSISALFILFLGLFPSLIL 468
|
|
| NuoN |
COG1007 |
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ... |
9-298 |
3.65e-19 |
|
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440631 [Multi-domain] Cd Length: 473 Bit Score: 87.86 E-value: 3.65e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699629 9 LFITIMIIGTLITVTSNSWLGAWMGLEINLLSFIPLLS-DNNNLMSTEASLKYFLTQVLASTVLLF-------------- 73
Cdd:COG1007 106 ALLLFATLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgisllygatgslnl 185
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699629 74 SSILLMLKNNMNNEINESFTSMIIMSALLLKSGAAPFHFWFPNMMEGLTWMNALMLMTWQKIA----------PLMLISY 143
Cdd:COG1007 186 AGIAAALAAGGANSPLLLLGLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAafaallrllvEAFPGLA 265
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699629 144 LNIKYLLLISVILSVIIGAIGGLNQTSLRKLMAFSSINHLGWMLSSLMISESI--------WLIYFFFYSFLSFVLTFM- 214
Cdd:COG1007 266 ADWQLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLgvsaalfyLLAYLFMNLGAFAVILLLs 345
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699629 215 ---FNIFKLFHLNQLFSwfvNSKILKFTLFMNFLSLGGLPPFLGFLPKWLVIQQLTLCNQYFMLTLMMMSTLITLFFYLR 291
Cdd:COG1007 346 rkgGEAEEIEDLAGLAR---RSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLR 422
|
....*..
gi 667699629 292 ICYSAFM 298
Cdd:COG1007 423 VVKAMYF 429
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| ND2 |
MTH00160 |
NADH dehydrogenase subunit 2; Provisional |
1-340 |
2.70e-97 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214442 [Multi-domain] Cd Length: 335 Bit Score: 291.34 E-value: 2.70e-97
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699629 1 MFNNSSKILFITIMIIGTLITVTSNSWLGAWMGLEINLLSFIPLLSDNNNLMSTEASLKYFLTQVLASTVLLFSSILLML 80
Cdd:MTH00160 1 MMMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699629 81 KNNMNNeineSFTSMIIMSALLLKSGAAPFHFWFPNMMEGLTWMNALMLMTWQKIAPLMLISYLNIKYLLLISVILSVII 160
Cdd:MTH00160 81 NLMLFN----NISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLINNNFIIIIIILSAII 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699629 161 GAIGGLNQTSLRKLMAFSSINHLGWMLSSLMISESIWLIYFFFYSFLSFVLTFMFNIFKLFHLNQLFSWFVNSKILKFTL 240
Cdd:MTH00160 157 GAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLL 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699629 241 FMNFLSLGGLPPFLGFLPKWLVIQQLTLCNQYFMLTLMMMSTLITLFFYLRICYSAFMMNYFENNWIMKMNMNSINYNMy 320
Cdd:MTH00160 237 FLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKKKKNKFSLIL- 315
|
330 340
....*....|....*....|
gi 667699629 321 MIMTFFSIFGLFLISLFYFM 340
Cdd:MTH00160 316 NFLSFISLFGLILSSLLFLL 335
|
|
| ND2 |
MTH00112 |
NADH dehydrogenase subunit 2; Provisional |
6-298 |
1.07e-67 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214423 [Multi-domain] Cd Length: 346 Bit Score: 215.84 E-value: 1.07e-67
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699629 6 SKILFITIMIIGTLITVTSNSWLGAWMGLEINLLSFIPLLSDNNNLMSTEASLKYFLTQVLASTVLLFSSIL--LMLKNN 83
Cdd:MTH00112 5 AKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTnaWNTGQW 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699629 84 MNNEINESFTSMIIMSALLLKSGAAPFHFWFPNMMEGLTWMNALMLMTWQKIAP---LMLISYLNIKYLLLISVILSVII 160
Cdd:MTH00112 85 DITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPltlLLMTSNSLNPTLLLTLAILSTLI 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699629 161 GAIGGLNQTSLRKLMAFSSINHLGWMLSSLMISESIWLIYFFFYSFLSFVLTFMFNIFKLFHLNQLFSWFVNSKILKFTL 240
Cdd:MTH00112 165 GGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTL 244
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 667699629 241 FMNFLSLGGLPPFLGFLPKWLVIQQLTLCNQYFMLTLMMMSTLITLFFYLRICYSAFM 298
Cdd:MTH00112 245 MLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTI 302
|
|
| ND2 |
MTH00135 |
NADH dehydrogenase subunit 2; Provisional |
16-295 |
1.35e-62 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177193 [Multi-domain] Cd Length: 347 Bit Score: 202.73 E-value: 1.35e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699629 16 IGTLITVTSNSWLGAWMGLEINLLSFIPLLSDNNNLMSTEASLKYFLTQVLASTVLLFSSIL---LMLKNNMNNeINESF 92
Cdd:MTH00135 15 LGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTnawLTGQWDIQQ-MSHPL 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699629 93 TSMIIMSALLLKSGAAPFHFWFPNMMEGLTWMNALMLMTWQKIAPLMLISYL--NIKYLLLISVILSVIIGAIGGLNQTS 170
Cdd:MTH00135 94 PTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIapTNPTLLITLGLTSTLVGGWGGLNQTQ 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699629 171 LRKLMAFSSINHLGWMLSSLMISESIWLIYFFFYSFLSFVLTFMFNIFKLFHLNQLFSWFVNSKILKFTLFMNFLSLGGL 250
Cdd:MTH00135 174 LRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPALTALTPLILLSLGGL 253
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 667699629 251 PPFLGFLPKWLVIQQLTlcNQYFML--TLMMMSTLITLFFYLRICYS 295
Cdd:MTH00135 254 PPLTGFMPKWLILQELT--KQDLPLtaTLAALSALLSLYFYLRLSYA 298
|
|
| ND2 |
MTH00105 |
NADH dehydrogenase subunit 2; Provisional |
8-295 |
4.71e-60 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177167 [Multi-domain] Cd Length: 347 Bit Score: 196.22 E-value: 4.71e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699629 8 ILFITIMIIGTLITVTSNSWLGAWMGLEINLLSFIPLLSDNNNLMSTEASLKYFLTQVLASTVLLFSSILLMLKNN--MN 85
Cdd:MTH00105 7 IIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMYSGqwTI 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699629 86 NEINESFTSMIIMSALLLKSGAAPFHFWFPNMMEGLTWMNALMLMTWQKIAPLMLI----SYLNIKyLLLISVILSVIIG 161
Cdd:MTH00105 87 TKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILyqisPSINPN-LLLTLAILSILIG 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699629 162 AIGGLNQTSLRKLMAFSSINHLGWMLSSLMISESIWLIYFFFYSFLSFVLTFMFNIFKLFHLNQLFSWFVNSKILKFTLF 241
Cdd:MTH00105 166 GWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLMTSLIL 245
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 667699629 242 MNFLSLGGLPPFLGFLPKWLVIQQLTLCNQYFMLTLMMMSTLITLFFYLRICYS 295
Cdd:MTH00105 246 LTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYS 299
|
|
| ND2 |
MTH00041 |
NADH dehydrogenase subunit 2; Validated |
3-341 |
6.95e-59 |
|
NADH dehydrogenase subunit 2; Validated
Pssm-ID: 177116 [Multi-domain] Cd Length: 349 Bit Score: 193.22 E-value: 6.95e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699629 3 NNSSKILFITIMIIGTLITVTSNSWLGAWMGLEINLLSFIPLLSDNNNLMSTEASLKYFLTQVLASTVLLFSSILLMLKN 82
Cdd:MTH00041 2 NRNVLIFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWLS 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699629 83 N--MNNEINESFTSMIIMSALLLKSGAAPFHFWFPNMMEGLTWMNALMLMTWQKIAPLMLISYLN---IKYLLLISVILS 157
Cdd:MTH00041 82 GswSINGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISnllNSNILILCGILS 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699629 158 VIIGAIGGLNQTSLRKLMAFSSINHLGWMLSSLMISESIWLIYFFFYSFLSFVLTFMFNIFKLFHLNQLFSWFVNSKILK 237
Cdd:MTH00041 162 VLVGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPISA 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699629 238 FTLFMNFLSLGGLPPFLGFLPKWLVIQQLTLCNQYFMLTLMMMSTLITLFFYLRICYSAFMMNYFENNWIMKMNMNSINY 317
Cdd:MTH00041 242 FLFILSILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSISLFSWRNSGNI 321
|
330 340
....*....|....*....|....*...
gi 667699629 318 NMYM----IMTFFSIFGLFLISLFYFMF 341
Cdd:MTH00041 322 TVYGvilsILSSISILGLLLIPLFLSFL 349
|
|
| ND2 |
MTH00070 |
NADH dehydrogenase subunit 2; Provisional |
10-295 |
1.03e-58 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177142 [Multi-domain] Cd Length: 346 Bit Score: 192.83 E-value: 1.03e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699629 10 FITIMIIGTLITVTSNSWLGAWMGLEINLLSFIPLLSDNNNLMSTEASLKYFLTQVLASTVLLFSSILLMLKNN--MNNE 87
Cdd:MTH00070 9 LLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWFTGewTIMN 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699629 88 INESFTSMIIMSALLLKSGAAPFHFWFPNMMEGLTWMNALMLMTWQKIAPLML---ISYLNIKYLLLISVILSVIIGAIG 164
Cdd:MTH00070 89 MQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALliqISHLLNSNLLIIMGLLSTLIGGWG 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699629 165 GLNQTSLRKLMAFSSINHLGWMLSSLMISESIWLIYFFFYSFLSFVLTFMFNIFKLFHLNQLFSWFVNSKILKFTLFMNF 244
Cdd:MTH00070 169 GLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTLTSMMMLTL 248
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 667699629 245 LSLGGLPPFLGFLPKWLVIQQLTLCNQYFMLTLMMMSTLITLFFYLRICYS 295
Cdd:MTH00070 249 LSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYA 299
|
|
| ND2 |
MTH00200 |
NADH dehydrogenase subunit 2; Provisional |
9-341 |
2.54e-50 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177246 [Multi-domain] Cd Length: 347 Bit Score: 170.92 E-value: 2.54e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699629 9 LFITIMIIGTLITVTSNSWLGAWMGLEINLLSFIPLLSDNNNLMSTEASLKYFLTQVLASTVLLFSSILLMLKNNMN--N 86
Cdd:MTH00200 8 LFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWTSGQWgiS 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699629 87 EINESFTSMIIMSALLLKSGAAPFHFWFPNMMEGLTWMNALMLMTWQKIAPLML---ISYLNIKYLLLISVILSVIIGAI 163
Cdd:MTH00200 88 EMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALliqLAPALNSNILLLLGLLSVLVGGW 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699629 164 GGLNQTSLRKLMAFSSINHLGWMLSSLMISESIWLIYFFFYSFLSFVLTFMFNIFKLFHLNQLFSWFVNSKILKFTLFMN 243
Cdd:MTH00200 168 GGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPILSMLLGLT 247
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699629 244 FLSLGGLPPFLGFLPKWLVIQQLTLCNQYFMLTLMMMSTLITLFFYLRICYSAFMMNYFENNWIMKMNMNSINYNMYM-I 322
Cdd:MTH00200 248 LLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSNSNLLVgL 327
|
330
....*....|....*....
gi 667699629 323 MTFFSIFGLFLISLFYFMF 341
Cdd:MTH00200 328 LLLLSILGLPLTPQLLFLF 346
|
|
| ND2 |
MTH00144 |
NADH dehydrogenase subunit 2; Provisional |
5-339 |
1.32e-48 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214432 [Multi-domain] Cd Length: 328 Bit Score: 165.83 E-value: 1.32e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699629 5 SSKILFITIMIIGTLITVTSNSWLGAWMGLEINLLSFIPLLSDNNNLMSTEASLKYFLTQVLASTVLLFSSILLMlknnm 84
Cdd:MTH00144 4 PSNLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMY----- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699629 85 nNEINESFTSMIIMSALLLKSGAAPFHFWFPNMMEGLTWMNALMLMTWQKIAPLMLISYLN----IKYLLLISVILSVII 160
Cdd:MTH00144 79 -NLSFSWFSMSLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLdlywLAYLLCVISVLSALV 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699629 161 GAIGGLNQTSLRKLMAFSSINHLGWMLSSLMISESIWLIYFFFYSFLSFVLTFMFNIFKLFHLNQLFSWFVNSKILKFTL 240
Cdd:MTH00144 158 GSIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKDLGSLKPSYKTGLSII 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699629 241 FMnFLSLGGLPPFLGFLPKWLVIQQLTLCNQYFMLTLMMMSTLITLFFYLRICYSAFMMNYfennwimKMNMNSINYNMY 320
Cdd:MTH00144 238 SL-LLSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFLSSS-------KSKKSNSSKVLN 309
|
330
....*....|....*....
gi 667699629 321 MIMTFFSIFGLFLISLFYF 339
Cdd:MTH00144 310 SSIISLNLLGGLLFLLLYL 328
|
|
| ND2 |
MTH00011 |
NADH dehydrogenase subunit 2; Validated |
9-299 |
3.78e-44 |
|
NADH dehydrogenase subunit 2; Validated
Pssm-ID: 164587 [Multi-domain] Cd Length: 330 Bit Score: 154.55 E-value: 3.78e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699629 9 LFITIMIIGTLITVTSNSWLGAWMGLEINLLSFIPLLSDNNNLMSTEASLKYFLTQVLASTVLLFSSILLMlknnMNNEI 88
Cdd:MTH00011 10 LFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGMTMMW----SFPSL 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699629 89 NESFTSMIIMSALLLKSGAAPFHFWFPNMMEGLTWMNALMLMTWQKIAPLMLISYL---NIKYLLLISVILSVIIGAIGG 165
Cdd:MTH00011 86 LKNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFtshNILPMMTSMAAMSALAGGLGG 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699629 166 LNQTSLRKLMAFSSINHLGWMLSSLMISESIWLIYFFFYSFLSFVLTFMFNIFKLFHLNQLFSWFVNSKILKFTLFMNFL 245
Cdd:MTH00011 166 MNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFIMLL 245
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 667699629 246 SLGGLPPFLGFLPKWLVIQQLTLCNQYFMLTLMMMSTLITLFFYLRICYSAFMM 299
Cdd:MTH00011 246 SLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIFNFMYL 299
|
|
| ND2 |
MTH00197 |
NADH dehydrogenase subunit 2; Provisional |
9-334 |
2.52e-42 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177244 [Multi-domain] Cd Length: 323 Bit Score: 149.44 E-value: 2.52e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699629 9 LFITIMIIGTLITVTSNSWLGAWMGLEINLLSFIPLLSDNNNLMSTEASLKYFLTQVLASTVLLFSSILLMlknnmNNEI 88
Cdd:MTH00197 2 LFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSF-----SNLY 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699629 89 NESFTSMIIMSALLLKSGAAPFHFWFPNMMEGLTWMNALMLMTWQKIAPLMLISYL-NIKYLLLISVILSVIIGAIGGLN 167
Cdd:MTH00197 77 LSLLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNsSSFMGLLICSVLSSLIGGIGGMN 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699629 168 QTSLRKLMAFSSINHLGWMLSSLMISESIWLIYFFFYSFLSFVLTFMFNIFKLFHLNQLFSWFVNSKILKFTLFMNFLSL 247
Cdd:MTH00197 157 QSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLSFLSL 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699629 248 GGLPPFLGFLPKWLVIQQLTLCNQYFMLTLMMMSTLITLFFYLRICYSAFMMNYFENNWIMKMNMNSINYNMYMIMTFFS 327
Cdd:MTH00197 237 GGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKSLILSNWMINFLMKINLLYSGLFILLMMMLPL 316
|
....*..
gi 667699629 328 IFGLFLI 334
Cdd:MTH00197 317 LMIFTMI 323
|
|
| Proton_antipo_M |
pfam00361 |
Proton-conducting membrane transporter; This is a family of membrane transporters that ... |
24-282 |
8.72e-30 |
|
Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.
Pssm-ID: 425636 [Multi-domain] Cd Length: 291 Bit Score: 115.10 E-value: 8.72e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699629 24 SNSWLGAWMGLEINLLSFIPLLSDN-NNLMSTEASLKYFLTQVLASTVLLFSSI-------------LLMLKNNMNNEIN 89
Cdd:pfam00361 1 ANDLLLMYLGWEAVLLPSYLLIGYWgKSPRSSEAGMKYFLLTLLGSSILLFGISlmynytgtlsfdeLSKALTGGLNSSG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699629 90 ESFTSMIIMSALLLKSGAAPFHFWFPNMMEGLTWMN-ALMLMTWQKIAPLMLI--------SYLNIKYLLLISVILSVII 160
Cdd:pfam00361 81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVsALLAATLVKAGGYGLIrrsllylpSSPFIQQILLILAIISMLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699629 161 GAIGGLNQTSLRKLMAFSSINHLGWMLSSLMISESIWLIYFFFYSFL---------SFVLTFMFNIFKLFHLNQLFSWFV 231
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYGIQAAIFHLLThglfsaglfLCAGSVIYRRVHTRNIRDYGGLAK 240
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 667699629 232 NSKILKFTLFMNFLSLGGLPPFLGFLPKWLVIQQLTLCNQYFMLTLMMMST 282
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
|
|
| ND2 |
MTH00196 |
NADH dehydrogenase subunit 2; Provisional |
15-292 |
1.47e-27 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214453 [Multi-domain] Cd Length: 365 Bit Score: 110.89 E-value: 1.47e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699629 15 IIGTLITVTSNSWLGAWMGLEINLLSFIPLLSDN-NNLMSTEASLKYFLTQVLASTVLLFSSILL-------------ML 80
Cdd:MTH00196 3 ALGILCLISSSNWLSVYLAIELQTLSLFILIAQNrGSGYSAEAGLKYFVLGALSSGLFLFGCALLcgttgglhlsyinLV 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699629 81 KNNMNN--EINESFTSMIIMSALLLKSGAAPFHFWFPNMMEGLTWMNALMLMTWQKIAPL-MLISYLNIKYLLLISVILS 157
Cdd:MTH00196 83 LNSGQSfsSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFsILVSIGLNVNILLIGGLFS 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699629 158 VIIGAIGGLNQTSLRKLMAFSSINHLGWMLSSLMIS--ESI-----WLIYFFFYSFLSFVLTFMFNIFKLFhLNQLFSWF 230
Cdd:MTH00196 163 LFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIGsfESIqaslvYLFIYIIMSICVFSIILALNVYKNL-IIEFSGLS 241
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 667699629 231 VNSKILKFTLFMNFLSLGGLPPFLGFLPKWLVIQQLTLCNQYFMLTLMMMSTLITLFFYLRI 292
Cdd:MTH00196 242 RRLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRI 303
|
|
| ND2 |
MTH00199 |
NADH dehydrogenase subunit 2; Provisional |
5-292 |
2.80e-25 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177245 [Multi-domain] Cd Length: 460 Bit Score: 105.48 E-value: 2.80e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699629 5 SSKILFITIMIIGTLITVTSNSWLGAWMGLEINLLS-FIPLLSDNNNLMSTEASLKYFLTQVLASTVLLFSSILL----- 78
Cdd:MTH00199 97 QSSPILILIVALGSLLLVSSINWLSIYLAIELQTLTlFILVALKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLygltg 176
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699629 79 -MLKNNMNNEINESFTSMIIMSALLLKSGAAPFHFWFPNMMEGLTWMNALMLMTWQKIAPL-MLISYLNIKYLLLISVIL 156
Cdd:MTH00199 177 eTSIQGINSILTGDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFsILVQIGPVTNVVLICAVL 256
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699629 157 SVIIGAIGGLNQTSLRKLMAFSSINHLGWMLSSLMIS--ESI-----WLIYFFFYSFLSFVLTFMFNIFKLFhLNQLFSW 229
Cdd:MTH00199 257 SIIYGAIGALNQTKIKRLLAYSGIGHMGFILFGVAIGsfESIqasliYMIIYVIMSICSFSIILSLKLTKGL-IVEVSGL 335
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 667699629 230 FVNSKILKFTLFMNFLSLGGLPPFLGFLPKWLVIQQLTLCNQYFMLTLMMMSTLITLFFYLRI 292
Cdd:MTH00199 336 SRKNPVIALTLALTFLSIAGIPPLAGFLSKWLILLSGVSSGYYLICIIAVLSSVIAGVYYVRV 398
|
|
| PRK05777 |
PRK05777 |
NADH-quinone oxidoreductase subunit NuoN; |
13-292 |
2.50e-21 |
|
NADH-quinone oxidoreductase subunit NuoN;
Pssm-ID: 235603 [Multi-domain] Cd Length: 476 Bit Score: 94.50 E-value: 2.50e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699629 13 IMIIGTLITVTSNSWLGAWMGLEI-NLLSFIPLLSDNNNLMSTEASLKYFLTQVLASTVLL--------------FSSIL 77
Cdd:PRK05777 111 FALLGMMVMVSANDLLTLFLGLELlSLPLYALAALRRDRRRSLEAAIKYFVLGALASGFLLygmsllygatgslsFAGIA 190
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699629 78 LMLKNNMNNEINESFTSMIIMSALLLKSGAAPFHFWFPNMMEGLTWMNALMLMTWQKIA---PLMLISYL-------NIK 147
Cdd:PRK05777 191 KALADGSGNSLLLLFGLVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAafaVLLRLLVVafgglseDWQ 270
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699629 148 YLLLISVILSVIIGAIGGLNQTSLRKLMAFSSINHLGWMLSSLMISESI--------WLIYFFFYSFLSFVLTFMFNifK 219
Cdd:PRK05777 271 QVLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEgysavlfyLLAYLFMTLGAFGVISLLRR--K 348
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 667699629 220 LFHLNQLFSW---FVNSKILKFTLFMNFLSLGGLPPFLGFLPKWLVIQQLTLCNQYFMLTLMMMSTLITLFFYLRI 292
Cdd:PRK05777 349 GGEAESISDFaglSKRSPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYYLRV 424
|
|
| NDH_I_N |
TIGR01770 |
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ... |
2-338 |
1.60e-20 |
|
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]
Pssm-ID: 273795 [Multi-domain] Cd Length: 468 Bit Score: 91.93 E-value: 1.60e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699629 2 FNNSSKILFITIMIIGTLITVTSNSWLGAWMGLEINLLSFIPLLS-DNNNLMSTEASLKYFLTQVLASTVLLF------- 73
Cdd:TIGR01770 99 INKFEFYILLLFALLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFgisliyg 178
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699629 74 -------SSILLMLKNNMNNEINESFTSMIIMSALLLKSGAAPFHFWFPNMMEGLTWMNALMLMTWQKIAPLMLI----- 141
Cdd:TIGR01770 179 ftgslnfEDLLLFLSNGMLNISLLLLGIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFlrlfl 258
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699629 142 -----SYLNIKYLLLISVILSVIIGAIGGLNQTSLRKLMAFSSINHLGWMLSSLMISESI--------WLIYFFFYSFLS 208
Cdd:TIGR01770 259 yilfgFSEAWQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEgikavlfyIFIYALMSLGAF 338
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699629 209 FVLTFMFNI--FKLFHLNQLFSWFVNSKILKFTLFMNFLSLGGLPPFLGFLPKWLVIQQLTLCNQYFMLTLMMMSTLITL 286
Cdd:TIGR01770 339 GVLSLLRSYkdEWIEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGA 418
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|..
gi 667699629 287 FFYLRICYSAFMMNyfENNWIMKMNMNSINYNMYMIMTFFSIFGLFLISLFY 338
Cdd:TIGR01770 419 FYYLRVVKVMYFDK--PERRIPSNPQSKAQSLLLSISALFILFLGLFPSLIL 468
|
|
| NuoN |
COG1007 |
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ... |
9-298 |
3.65e-19 |
|
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440631 [Multi-domain] Cd Length: 473 Bit Score: 87.86 E-value: 3.65e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699629 9 LFITIMIIGTLITVTSNSWLGAWMGLEINLLSFIPLLS-DNNNLMSTEASLKYFLTQVLASTVLLF-------------- 73
Cdd:COG1007 106 ALLLFATLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgisllygatgslnl 185
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699629 74 SSILLMLKNNMNNEINESFTSMIIMSALLLKSGAAPFHFWFPNMMEGLTWMNALMLMTWQKIA----------PLMLISY 143
Cdd:COG1007 186 AGIAAALAAGGANSPLLLLGLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAafaallrllvEAFPGLA 265
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699629 144 LNIKYLLLISVILSVIIGAIGGLNQTSLRKLMAFSSINHLGWMLSSLMISESI--------WLIYFFFYSFLSFVLTFM- 214
Cdd:COG1007 266 ADWQLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLgvsaalfyLLAYLFMNLGAFAVILLLs 345
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699629 215 ---FNIFKLFHLNQLFSwfvNSKILKFTLFMNFLSLGGLPPFLGFLPKWLVIQQLTLCNQYFMLTLMMMSTLITLFFYLR 291
Cdd:COG1007 346 rkgGEAEEIEDLAGLAR---RSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLR 422
|
....*..
gi 667699629 292 ICYSAFM 298
Cdd:COG1007 423 VVKAMYF 429
|
|
| ND2 |
MTH00198 |
NADH dehydrogenase subunit 2; Provisional |
6-292 |
6.18e-17 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214454 [Multi-domain] Cd Length: 607 Bit Score: 81.83 E-value: 6.18e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699629 6 SKILFITIMIIGTLITVTSNSWLGAWMGLEINLLSFIPLLSDNNNLMST---------EASLKYFLTQVLASTVLLFS-- 74
Cdd:MTH00198 189 SGFALVLIVGLGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGca 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699629 75 -------------SILLMLKNNMNNEINE-SFTSMIIMSALLLKSGAAPFHFWFPNMMEGLTWMNALMLMTWQKIAPLML 140
Cdd:MTH00198 269 lyfgftgnegmlgTILSATLETTNIELRQgSLGYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVYIL 348
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699629 141 ISYLNIKYLLLISV-ILSVIIGAIGGLNQTSLRKLMAFSSINHLGWML--------SSLMISESIWLIYFFFYSFLSFVL 211
Cdd:MTH00198 349 LTSLVITSKLLLSVaIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILigvsagtyESLQASWTYAVTYLVSALASFTVI 428
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699629 212 TFM-----------------FNIFKLFHLNQLFSWFVNSKILKFTLFMNFLSLGGLPPFLGFLPKWLVIQ-------QLT 267
Cdd:MTH00198 429 CTLeefgtrtptsrqrdgsfGNYNLVRRLVDLTILSRGQPYIAFSLAIVFLSLAGIPPLLGFLGKWFILVgsikiafSSS 508
|
330 340
....*....|....*....|....*
gi 667699629 268 LCNQYFMLTLMMMSTLITLFFYLRI 292
Cdd:MTH00198 509 LSIYYLVALFAIICTCISAFYYIRI 533
|
|
| PRK08375 |
PRK08375 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
34-298 |
2.45e-11 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 236251 [Multi-domain] Cd Length: 487 Bit Score: 64.52 E-value: 2.45e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699629 34 LEINLLSFIPLLSDNNNLMSTEASLKYFLTQVLASTVLLFSSILLMLK---------NNMNNEINESFTSM-IIMSALLL 103
Cdd:PRK08375 135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGVGLLYGVtgtlnmadlAGALAENPTVVTAFgFVLLALAL 214
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699629 104 KSGAAPFHFWFPNMMEGLTWMNALML-MTWQKIAPLMLI------------SYLNIKYLLLISVILSVIIGAIGGLNQTS 170
Cdd:PRK08375 215 KAAVFPLHTWLPRAYPAAPPVVTALLsGLVTKVAVYALIriyftvfggdfrFALGLGWLLAVLALLSMLVGSLAALGQDD 294
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699629 171 LRKLMAFSSINHLGWML------SSLMISESIWLIYFFFYSFLSFVLT-----FMFNIFKLFHLNQLFSwfvNSKILKFT 239
Cdd:PRK08375 295 VKRVLAYSTVSQMGYILlglallTPLALAAGLLHLLHHALMKGALFLAagaieVTYGTRRLSELSGLGR---RMPLTAAA 371
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 667699629 240 LFMNFLSLGGLPPFLGFLPKWLVIQQLTLCNQYFMLTLMMMSTLITLFFYLRICYSAFM 298
Cdd:PRK08375 372 FAVASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRIWYRAFF 430
|
|
| HyfB |
COG0651 |
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ... |
10-296 |
2.73e-11 |
|
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 440416 [Multi-domain] Cd Length: 430 Bit Score: 64.01 E-value: 2.73e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699629 10 FITIMIIGTLITVTSNSWLGAWMGLEINLLSFIPLLSDNNNLMSTEASLKYFLTQVLASTVLLFSSILLMLKN------N 83
Cdd:COG0651 112 LFLLLLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATgtlnmaD 191
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699629 84 MNNEINESFTSMIIMSALLL------KSGAAPFHFWFPNMM-EGLTWMNALM--LMTwqKIAPLMLI----------SYL 144
Cdd:COG0651 192 LAARLAELDPGLLLAAFALLlvgfgiKAALFPLHFWLPDAYpAAPSPVSALLsgLLT--KVGVYAILrvltllfgadPAL 269
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699629 145 NIKYLLLISVILSVIIGAIGGLNQTSLRKLMAFSSINHLGWMLSSLMISESIWLIYfffysflsfVLTFMFN--IFK--L 220
Cdd:COG0651 270 FLGTLLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAG---------ALFHLLNhaLAKalL 340
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699629 221 F-------------HLNQLFSWFVNSKILKFTLFMNFLSLGGLPPFLGFLPKWLVIQQLTLCNQYFMLTLMMMSTLITLF 287
Cdd:COG0651 341 FlaagaieratgtrDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLA 420
|
....*....
gi 667699629 288 FYLRICYSA 296
Cdd:COG0651 421 YFVRIFGRA 429
|
|
| PRK08376 |
PRK08376 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
11-332 |
2.89e-09 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 236252 [Multi-domain] Cd Length: 521 Bit Score: 58.18 E-value: 2.89e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699629 11 ITIMIIGTLITVTSNSWLGAWMGLEINLLSFIPLLS-DNNNLMSTEASLKYFLTQVLASTVLLFSSILLMLKNN------ 83
Cdd:PRK08376 127 ILLLELGMLGMAITGDLFNFFVFLEIMSIASYALVAfRNDTWEAIEAGIKYMFVGSLASSMVLLGIALLYGQYGtlnmay 206
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699629 84 --MNNEINESFTSMIIMS----ALLLKSGAAPFHFWFPNMM-EGLTWMNALMLMTWQ-KIAPLMLISY---------LNI 146
Cdd:PRK08376 207 laVKMSENPTVVAKIALAlfiaGLAMKSGAVPVHMWLPDAYpAAPSSISAMLLVIKQaGLYALARVLFsiygpainlATV 286
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699629 147 KYLLLISVILSVIIGAIGGLNQTSLRKLMAFSSINHLGWMLSSLMISESIWLIYFFFYSFLSFVLTFMFNIFK------- 219
Cdd:PRK08376 287 GWVIIILGCLTMFVGVAMAVVQKDVKRLLAYHSVSQIGYMLLGLGVGLAALGDPAMASYGEIALAGGIYHIVNhalykal 366
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699629 220 -------LFH------LNQLFSWFVNSKILKFTLFMNFLSLGGLPPFLGFLPKWLVIQQLTLCNQyFMLTLMMMSTLITL 286
Cdd:PRK08376 367 lfltagaVIYetgtrnLNELGGLARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLIYESSALFNP-ILGVIAMIGSVLTL 445
|
330 340 350 360
....*....|....*....|....*....|....*....|....*.
gi 667699629 287 FFYLRICYSAFMMNYFENNWIMKMNMNSINYNMYMIMTFFSIFGLF 332
Cdd:PRK08376 446 ASFVKVFHTAFFGPPSEKVMNVKEPPKPMLVPMLILAIAIIGMGLF 491
|
|
| ndhB |
CHL00049 |
NADH dehydrogenase subunit 2 |
53-292 |
2.73e-07 |
|
NADH dehydrogenase subunit 2
Pssm-ID: 176990 [Multi-domain] Cd Length: 494 Bit Score: 51.93 E-value: 2.73e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699629 53 STEASLKYFLTQVLASTVLLFSSILL----------------MLKNNMNNEINESFTSMIIMSALLLKSGAAPFHFWFPN 116
Cdd:CHL00049 160 SNEATMKYLLMGGASSSILVYGFSWLyglsggeielqeivngLINTQMYNSPGISIALIFITVGIGFKLSLAPFHQWTPD 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699629 117 MMEGLTWMNALMLMTWQKIAPLML-ISYLNIKY---------LLLISVILSVIIGAIGGLNQTSLRKLMAFSSINHLGWM 186
Cdd:CHL00049 240 VYEGSPTPVVAFLSVTSKVAASALaTRIFDIPFyfssnewhlLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGYV 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699629 187 LsslmisesIWLIYFFFYSFLSFVLTFM-FNIFK---LFHLNQLFS-------------WFVNSKILKFTLFMNFLSLGG 249
Cdd:CHL00049 320 I--------IGIIVGDSNDGYASMITYMlFYIFMnlgTFACIVLFGlrtgtdnirdyagLYTKDPFLALSLALCLLSLGG 391
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 667699629 250 LPPFLGFLPKWLVIQQLTLCNQYFMLTLMMMSTLITLFFYLRI 292
Cdd:CHL00049 392 IPPLAGFFGKLYLFWCGWQAGLYFLVSIGLLTSVISIYYYLKI 434
|
|
| PRK12663 |
PRK12663 |
Na+/H+ antiporter subunit D; |
149-297 |
6.29e-07 |
|
Na+/H+ antiporter subunit D;
Pssm-ID: 237163 [Multi-domain] Cd Length: 497 Bit Score: 50.72 E-value: 6.29e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699629 149 LLLISVILSVIIGAIGGLNQTSLRKLMAFSSINHLGWMLSSLM------ISESIW-----LIYFFFYSFLSFVLTFMFNI 217
Cdd:PRK12663 274 LLATMAAITMVIGALGALAYKDIRRIAGYQVISSIGFILLGLAlgtpagINGAIFylvhdMVVKTALFLIAGSLVRLTGY 353
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699629 218 FKLFHLNQLFSwfvNSKILKFTLFMNFLSLGGLPPFLGFLPKWLVIQQLTLCNQYFMLTLMMMSTLITLFFYLRICYSAF 297
Cdd:PRK12663 354 RSLQYLGGLYR---KEPLFGALFLILIFAIGGLPPFSGFWGKVLLVQGALDNGAYILLALMLITSLITMYSLFRIFFLAY 430
|
|
| PRK02504 |
PRK02504 |
NAD(P)H-quinone oxidoreductase subunit N; |
53-292 |
1.90e-06 |
|
NAD(P)H-quinone oxidoreductase subunit N;
Pssm-ID: 235044 [Multi-domain] Cd Length: 513 Bit Score: 49.28 E-value: 1.90e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699629 53 STEASLKYFLTQVLASTVLLFSSILLMLKNNMNNEINESFTSMIIMSALLL-------------KSGAAPFHFWFPNMME 119
Cdd:PRK02504 159 SNEAALKYLLIGAASSAIFLYGSSLLYGLSGGSTQLSAIALALITSPSLGLalalvfviagiafKISAVPFHQWTPDVYE 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699629 120 GLTWMNALMLMTWQKIAPLML-ISYLNI---------KYLLLISVILSVIIGAIGGLNQTSLRKLMAFSSINHLGWMLSS 189
Cdd:PRK02504 239 GSPTPVVAFLSVGSKAAGFALaIRLLVTafpsfdeqwKLLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAGFVMIG 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699629 190 LMISESiwliyFFFYSFLSFVLTFMFNIFKLFHLNQLFSWFVNSK-------------ILKFTLFMNFLSLGGLPPFLGF 256
Cdd:PRK02504 319 LVAGTE-----AGYASMVFYLLAYLFMNLGAFACVILFSLRTGTDqisdyaglyqkdpLLTLGLSLCLLSLGGIPPLAGF 393
|
250 260 270
....*....|....*....|....*....|....*.
gi 667699629 257 LPKWLVIQQLTLCNQYFMLTLMMMSTLITLFFYLRI 292
Cdd:PRK02504 394 FGKIYLFWAGWQAGLYLLVLVGLVTSVISIYYYIRV 429
|
|
| PRK12650 |
PRK12650 |
DUF4040 family protein; |
93-186 |
7.99e-06 |
|
DUF4040 family protein;
Pssm-ID: 237158 [Multi-domain] Cd Length: 962 Bit Score: 47.73 E-value: 7.99e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699629 93 TSMIIMSALLLKSGAAPFHFWFPNMMEGLTWMNALM---LMTWQKIAPLMLISYL--NI---KYLLLISVILSVIIGAIG 164
Cdd:PRK12650 210 VAVLIAVAAFTKSAQFPFHFWLPEAMAAITPVSAFLhaaAVVKAGIYLLLRFSPVfhDVavwNWLLIIVGMITALMGAVF 289
|
90 100
....*....|....*....|..
gi 667699629 165 GLNQTSLRKLMAFSSINHLGWM 186
Cdd:PRK12650 290 AVQKTDLKKLTAYSTVSQLGWI 311
|
|
| NADH_dehy_S2_C |
pfam06444 |
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ... |
287-335 |
1.54e-05 |
|
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.
Pssm-ID: 461914 [Multi-domain] Cd Length: 51 Bit Score: 41.86 E-value: 1.54e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 667699629 287 FFYLRICYSAFM-MNYFENNWIMKMNMNSI-NYNMYMIMTFFSIFGLFLIS 335
Cdd:pfam06444 1 FFYLRLSYSTTLtLFPNTNNSKMKWRFNSTkNTLLLPTLTTLSILLLPLTP 51
|
|
| PRK12665 |
PRK12665 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
149-264 |
4.00e-05 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 237165 [Multi-domain] Cd Length: 521 Bit Score: 45.34 E-value: 4.00e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699629 149 LLLISVILSVIIGAIGGLNQTSLRKLMAFSSINHLGWMLSSLMISESIWLIYFFFYSFL-SFVLTFMFNIFKLFH----- 222
Cdd:PRK12665 275 LLMVVALLTMVVGILGAIAQSDIKRLLSFTLVSHIGYMVFGIALSTVAGLSGAIYYVAHhITVQTTLFLVVGLIErqags 354
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 667699629 223 --LNQLFSWFVNSKILKFTLFMNFLSLGGLPPFLGFLPKWLVIQ 264
Cdd:PRK12665 355 ssLRRLGGLAKASPLLAVLFFVPALNLGGIPPFSGFIGKVALLE 398
|
|
| PRK06589 |
PRK06589 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
3-340 |
7.20e-05 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 235835 [Multi-domain] Cd Length: 489 Bit Score: 44.42 E-value: 7.20e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699629 3 NNSSKILFITIMIIGTLITVTSNSWLGAWMGLEINLLSFIPLLSDNNNLMSTEASLKYFLTQVLASTVLLFSSILLMLKN 82
Cdd:PRK06589 114 SSSRFLFFFNLTILIGVLIALSSDLFTMFVCYELLTISTAFLIGHTRNNISLSGGYKYLKILMISALLLFLPAVILIYTK 193
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699629 83 NMNNEI--------NESFTSMIIMSALLLKSGAAPFHFWFPNMMEGLTWMNALM----------LMTWQKIAPLMLISYL 144
Cdd:PRK06589 194 TGNLDFvsgglfskNQSIILLLMFIYGIAKTAIFPVHSWLPAAMVAHYPVSALLhavivvktglFCIYKILLYIFGLSYL 273
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699629 145 NIKY----LLLISVILSVIIGAIGGLNQTSLRKLMAFSSINHLGWMLSSLMI----SESIWLIYFFFYSFLSFVLTF-MF 215
Cdd:PRK06589 274 QRIFaefnWLIFIPIVSIFYSSLKALKTDNIKKILAYSTISQLSLALLSAFIltpkALGAAILHLVSHSFAKICLFYsMG 353
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699629 216 NIFKLFHLNQLFSWFVNSKILKFTLFM---NFLSLGGLPPFLGFLPKWLVIQQLTLCNQYFMLTLMMM----STLITLFF 288
Cdd:PRK06589 354 SIYSLKKEDQVDKLHGTSKSFPLISFIisiSSLSLIGIPIFSGFISKFLILLAASEQNQPWLSIIVMLvviaSSILSALY 433
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|..
gi 667699629 289 YLRICYSAFMMNYFENNWIMKMNMNSINYNMYMIMTFFSIFGLFLISLFYFM 340
Cdd:PRK06589 434 LLKILSSIYKPSLSENSFITKSLPYLMQISVITCCCALTLFYFIQILIREFL 485
|
|
| ND2 |
MTH00091 |
NADH dehydrogenase subunit 2; Provisional |
101-334 |
7.55e-05 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177154 Cd Length: 273 Bit Score: 43.71 E-value: 7.55e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699629 101 LLLKSGAAPFHFWFPNMMEGLTWMNALMLMTWQKIaPLMLISYLNIKYLLLISVILSVIIGAIGGLNQTSLRKLMAFSSI 180
Cdd:MTH00091 67 LMMKIGVAPFHFWIFSVTNGLFGWNLMWFLTFQKL-PFLLVLLQFFSKNFFFLLLFGLLICFFQMFLLKSYKNLLILSST 145
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699629 181 NHLGWMLSSLMISesiwliyfffySFLSFVLTFMFNIFKLFhlnqLFSWFVNSKILKFTLFMNFLSLGGLPPFLGFLPKW 260
Cdd:MTH00091 146 ESFNWLILSFFFS-----------FFNVFFLFFYYFLLMLF----LIPKFNNVNKLNFVSWETLLVFMNLPFSVTFFVKI 210
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 667699629 261 LVIQQLTLCNQYFMLTLMMMSTLITLFFylricysafmmNYFENNWIMKMNMNSINYNMYMIMTFFSIFGLFLI 334
Cdd:MTH00091 211 FSLSEILKVLGFFLLFLLFLMFLSVLSL-----------SFWLVNLSTKLFLMLFKYNKGFFFFFLPLMLLSLI 273
|
|
| PRK07691 |
PRK07691 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
148-297 |
2.81e-04 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 181085 [Multi-domain] Cd Length: 496 Bit Score: 42.63 E-value: 2.81e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699629 148 YLLLISVILSVIIGAIGGLNQTSLRKLMAFSSINHLGWMLSSL--MISESI-----WLIYFFFYSFLSFVLT-FMFNIFK 219
Cdd:PRK07691 276 YLILILALLTIIFGVIGAVAYFDIKKIIIYNIMIAVGVILVGVamMTESGMigaiyYLIHDMIVKAALFLLIgIMIKITG 355
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 667699629 220 LFHLNQLFSWFVNSKILKFTLFMNFLSLGGLPPFLGFLPKWLVIQQLTLCNQYFMLTLMMMSTLITLFFYLRICYSAF 297
Cdd:PRK07691 356 TTDLKKMGGLIKRYPVLGWMFFIAALSLAGIPPLSGFYGKFFIVEGTFEAGFYVSGIIVLLSSLLVLYSVIKIFLKGF 433
|
|
| PRK08667 |
PRK08667 |
hydrogenase membrane subunit; Validated |
10-187 |
3.54e-03 |
|
hydrogenase membrane subunit; Validated
Pssm-ID: 236331 [Multi-domain] Cd Length: 644 Bit Score: 39.33 E-value: 3.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699629 10 FITIMIIGTLITVTSNSWLGAWMGLEI-NLLSFIPLLSDNNNLMSTEASLKYF-LTQVlaSTVLLFSSILLMLKNNMNNE 87
Cdd:PRK08667 116 LTALFILSMLGVVASANTFSFLFFWEImALSSFFLVMNDYQEEETQRAGIFYFvMTQL--STVFLMLGIIVLFIQTGSFE 193
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699629 88 INESFTSMIIMSALLL--------KSGAAPFHFWFPNMMEGL-TWMNALMLMTWQKIAPLMLISYLNIKY--------LL 150
Cdd:PRK08667 194 LSPLGASAGILSLVFLllflgfgiKAGIIPFHKWLPYAHPASpSNVSALMSGVMLKVAVYGLVRFLMDVLspelwwgvLI 273
|
170 180 190
....*....|....*....|....*....|....*..
gi 667699629 151 LISVILSVIIGAIGGLNQTSLRKLMAFSSINHLGWML 187
Cdd:PRK08667 274 LLAGSISALLGVIYALKEHDLKGLLAYSSIENIGIIL 310
|
|
| PRK08668 |
PRK08668 |
NADH dehydrogenase subunit M; Validated |
3-298 |
6.02e-03 |
|
NADH dehydrogenase subunit M; Validated
Pssm-ID: 236332 [Multi-domain] Cd Length: 610 Bit Score: 38.44 E-value: 6.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699629 3 NNSSKILFITIMIIGTLITVTSNSWLGAWMGLEINLL-SFIPLLSDNNNlmSTEASLKYFLTQVLASTVLLFSSILLMLK 81
Cdd:PRK08668 96 NDAYFNMFALMSLAGVLGVFLANDLLTLYIFWEIMTFsSFMMVPMGKKE--SRKASLKYFVLSAIGAYAMLYAIFLIYAK 173
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699629 82 NN-------MNNEINESFTSMIIMSALLL------KSGAAPFHFWFPN------------MMEGLTWMNALMLMTWQKIA 136
Cdd:PRK08668 174 TGtfdfadiSQGLINDTSTGFALIVFLFLlafgvaKAGIFPLHVWAPDayseapqsfsavLSGQLSKLGAYGFLLVLYVL 253
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699629 137 PL--MLISYLNIKYLLLISVIL------SVIIGAIGGLNQTSLRKLMAFSSINHLGWMLSSLMISESIWLIYFffysfls 208
Cdd:PRK08668 254 PGtkLFSEFGTYRGVPLFNYILawlgniSIIVGTLMAILQEDIKKLIAYSSVANGGYILVGLGLGTSLGFAGG------- 326
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667699629 209 fvltfMFNIFKLFHLNQLFSWFVNSKILK-----------------FTLFMNF---LSLGGLPPFLGFLPKWLVIQQLTL 268
Cdd:PRK08668 327 -----LFHVFNHALFKGLFFLIFAAVIYRtgttkisemggliekmpFTFAMYLvaiISLAGIPPMSGFASKWLIFEALIS 401
|
330 340 350
....*....|....*....|....*....|
gi 667699629 269 CNQYFMLTLMMMSTLITLFFYLRICYSAFM 298
Cdd:PRK08668 402 KGMPITAFMAFFGSIGSFLYVFRPLAGVFL 431
|
|
| |
