|
Name |
Accession |
Description |
Interval |
E-value |
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
743-1065 |
5.76e-37 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 148.76 E-value: 5.76e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663513256 743 YAEQLERAKKAIEARGKHDDLERQLidkrprakrrntKKRGLEDEATDLLASFKLGSDDEMGSAVGTGKHRLNLEGEMEN 822
Cdd:COG4717 339 LLELLDRIEELQELLREAEELEEEL------------QLEELEQEIAALLAEAGVEDEEELRAALEQAEEYQELKEELEE 406
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663513256 823 ERGQFTNLAKrwdkswnDFENEIEGADPIEDEAICTEKNRRDESLGEEIADLQGQLDSLSAELLNLDESDELTRKQADKK 902
Cdd:COG4717 407 LEEQLEELLG-------ELEELLEALDEEELEEELEELEEELEELEEELEELREELAELEAELEQLEEDGELAELLQELE 479
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663513256 903 AILAELNEVNLRWAHLFLVRFIIQRTREQYEGSHGSEVLIRASEHLERITGGRYTQIlRVVEDPGYQLVEASGSYRSpiP 982
Cdd:COG4717 480 ELKAELRELAEEWAALKLALELLEEAREEYREERLPPVLERASEYFSRLTDGRYRLI-RIDEDLSLKVDTEDGRTRP--V 556
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663513256 983 PDLSRAAFAQVYLCIRLAYAEKGTHSSLPIILDDAYEGYDDERVPPALDILCELGKARQVILLSHHGHICEAAEERGASV 1062
Cdd:COG4717 557 EELSRGTREQLYLALRLALAELLAGEPLPLILDDAFVNFDDERLRAALELLAELAKGRQVIYFTCHEELVELFQEEGAHV 636
|
...
gi 663513256 1063 IQL 1065
Cdd:COG4717 637 IEL 639
|
|
| AAA_27 |
pfam13514 |
AAA domain; This domain is found in a number of double-strand DNA break proteins. This domain ... |
2-212 |
4.61e-15 |
|
AAA domain; This domain is found in a number of double-strand DNA break proteins. This domain contains a P-loop motif.
Pssm-ID: 433272 [Multi-domain] Cd Length: 207 Bit Score: 75.28 E-value: 4.61e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663513256 2 MRIDTIHVDKYGGLNDLTLQLVN---DFQVIKGLNEEGKTTLLAFIRGVFFGFSK------VFPHLKMrsapfftegeRM 72
Cdd:pfam13514 1 MRIRRLDLERYGPFTDRSLDFPAggpDLHLIYGPNEAGKSTALRAISDLLFGIPLrtpynfLHDYSDL----------RI 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663513256 73 GGRIEvmvelEGKERRYAIIRHTGTKQDgelsIRDLESNGLivgGEAVTLRdiILGGVDKTLFDSVFVLTVDDL----HD 148
Cdd:pfam13514 71 GATLE-----NADGETLEFRRRKGRKNT----LLDADGQPL---PDDVLAP--FLGGLDRETFERMFGLDHERLreggEA 136
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 663513256 149 LkALSKDEVAHALFSADSGLGlELPRELSAMQEQMDKLYNdEHKRGKQRQRILTARLNGLTKEI 212
Cdd:pfam13514 137 I-LEAEGDLGQALFAAGSGLA-GLRRVLEALDAEADALFK-PRGSSPRAFNQALARLDEAQREL 197
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
199-759 |
6.82e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 59.95 E-value: 6.82e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663513256 199 RILTARLNGLTKEIGTLNQKMKELSGRRGAREKmngQLEELRRTRSGLALDVKRATDRInaREHKSRIDGLKEEIDELPD 278
Cdd:COG1196 235 RELEAELEELEAELEELEAELEELEAELAELEA---ELEELRLELEELELELEEAQAEE--YELLAELARLEQDIARLEE 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663513256 279 GpfpADSAQARLESLRKDISSLEDELGDLDEEIESLENEQSnlsldpDAEGSHSSLEAVRVSDLFERVTEVEHANNLRDE 358
Cdd:COG1196 310 R---RRELEERLEELEEELAELEEELEELEEELEELEEELE------EAEEELEEAEAELAEAEEALLEAEAELAEAEEE 380
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663513256 359 KESLSDLELEEgfETRLKEAHSRHEEIVGKIEDLTEREDIANISLGKYEPQVLDAGLASEidgAITRRYSQHSDPLDRAK 438
Cdd:COG1196 381 LEELAEELLEA--LRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEE---EEEEALEEAAEEEAELE 455
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663513256 439 GEVKRIESDLKAALKSAGGMDAEVLDDLPLDAASISRLRASLSESGSTP-RSRFAQIQTLIALSALVLGLCIAFVLDEML 517
Cdd:COG1196 456 EEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEgFLEGVKAALLLAGLRGLAGAVAVLIGVEAA 535
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663513256 518 GGGGLALISLLLLILDRLENQGAEGAAELSGSVKKQLK----HLGLSSHASAKDLDRLVNSLSGAITHSEELSRAKSSRD 593
Cdd:COG1196 536 YEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRatflPLDKIRARAALAAALARGAIGAAVDLVASDLREADARY 615
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663513256 594 EVEGLYTAGIELLNRLVDDCGLEAVDEGASAAHLEGVLEDIMLTHRYAVIQVGVQNEELTKIHTSKGIFSGQLRDNTKEL 673
Cdd:COG1196 616 YVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELEL 695
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663513256 674 NDILAELDEEDQESATAVLAEITRRLEIETELERLASAESVVEKIREAVNAACKSVGDGEPSLDNLAIVYAEQLERAKKA 753
Cdd:COG1196 696 EEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLERE 775
|
....*.
gi 663513256 754 IEARGK 759
Cdd:COG1196 776 IEALGP 781
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
171-913 |
1.57e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 58.91 E-value: 1.57e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663513256 171 ELPRELSAMQEQMDKLyNDEHKRGKQRQRILTARLNGLTKEIGTLNQKMKELSGRRGA----REKMNGQLEELRRTRSGL 246
Cdd:TIGR02168 257 ELTAELQELEEKLEEL-RLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANlerqLEELEAQLEELESKLDEL 335
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663513256 247 ALDVKRATDRINarEHKSRIDGLKEEIDELPDGPFPADSA----QARLESLRKDISSLEDELGDLDEEIESLENEQSNLS 322
Cdd:TIGR02168 336 AEELAELEEKLE--ELKEELESLEAELEELEAELEELESRleelEEQLETLRSKVAQLELQIASLNNEIERLEARLERLE 413
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663513256 323 -----LDPDAEGSHSSLEAVRVSDLFERVTEVEhannlrdeKESLSDLELEEGFETRLKEAHSRHEEIVGKIEDLteRED 397
Cdd:TIGR02168 414 drrerLQQEIEELLKKLEEAELKELQAELEELE--------EELEELQEELERLEEALEELREELEEAEQALDAA--ERE 483
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663513256 398 IANISLGKYEPQVLDAGLASEIDG--AITRRYSQHSDPLDRAkGEVKRIESDLKAALKSAGG--MDAEVLDDLPLDAASI 473
Cdd:TIGR02168 484 LAQLQARLDSLERLQENLEGFSEGvkALLKNQSGLSGILGVL-SELISVDEGYEAAIEAALGgrLQAVVVENLNAAKKAI 562
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663513256 474 SRL------RASLSE----SGSTPRSRFAQIqtlIALSALVLGLCIAFVLDEMLGGGGLALISLLLLILDRLENqgaegA 543
Cdd:TIGR02168 563 AFLkqnelgRVTFLPldsiKGTEIQGNDREI---LKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVLVVDDLDN-----A 634
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663513256 544 AELSGSVKKQ----------LKHLGLSSHASAKdldrlvnSLSGAITHSEELSRAKSSRDEVEGLYTAGIELLNRLvddc 613
Cdd:TIGR02168 635 LELAKKLRPGyrivtldgdlVRPGGVITGGSAK-------TNSSILERRREIEELEEKIEELEEKIAELEKALAEL---- 703
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663513256 614 gLEAVDEgasaahLEGVLEDIMLTHRYAVIQVGVQNEELTKIHTSKGIFSGQLRDNTKELNDILAELDEEDQESATAVLA 693
Cdd:TIGR02168 704 -RKELEE------LEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEE 776
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663513256 694 EITRRLEIETELERLASAESVVEKIREAVNAACKSVGDGEPSLDNLAIVYaEQLERAKKAIEARgkHDDLERQLIDKRPR 773
Cdd:TIGR02168 777 LAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERL-ESLERRIAATERR--LEDLEEQIEELSED 853
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663513256 774 AKRRNTKKRGLEDEATDLLASFKLGSDDEMGSAVGTGKHRLNLE------GEMENERGQFTNLAKRWDKSWNDFENEIEG 847
Cdd:TIGR02168 854 IESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEelseelRELESKRSELRRELEELREKLAQLELRLEG 933
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 663513256 848 AdpiedeaicteKNRRD---ESLGEEIADLQGQLDSLSAELLnlDESDELTRKQADKKAILAELNEVNL 913
Cdd:TIGR02168 934 L-----------EVRIDnlqERLSEEYSLTLEEAEALENKIE--DDEEEARRRLKRLENKIKELGPVNL 989
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
2-287 |
4.35e-07 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 54.00 E-value: 4.35e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663513256 2 MRIDTIHVDKYGGLNDLTLQLVNDFQVIKGLNEEGKTTLLAFIRGVFFgfSKVFPHLKMRSAPFFTEGERMGGRIEV--- 78
Cdd:COG4717 1 MKIKELEIYGFGKFRDRTIEFSPGLNVIYGPNEAGKSTLLAFIRAMLL--ERLEKEADELFKPQGRKPELNLKELKElee 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663513256 79 -MVELEGKERRYAiiRHTGTKQDGELSIRDLESnglivggEAVTLRdiilggvdktlfdsvfvltvddlHDLKALSKDEV 157
Cdd:COG4717 79 eLKEAEEKEEEYA--ELQEELEELEEELEELEA-------ELEELR-----------------------EELEKLEKLLQ 126
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663513256 158 AHALFSADSglglELPRELSAMQEQMDKLYNDEHKRGKQRQRILTarlngLTKEIGTLNQKMKELsgRRGAREKMNGQLE 237
Cdd:COG4717 127 LLPLYQELE----ALEAELAELPERLEELEERLEELRELEEELEE-----LEAELAELQEELEEL--LEQLSLATEEELQ 195
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 663513256 238 ELRRTRSGLALDVKRATDRInaREHKSRIDGLKEEIDELPDGPFPADSAQ 287
Cdd:COG4717 196 DLAEELEELQQRLAELEEEL--EEAQEELEELEEELEQLENELEAAALEE 243
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
171-395 |
9.78e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 53.14 E-value: 9.78e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663513256 171 ELPRELSAMQEQMDKLYNDEHKRGKQRQRILTARLNGLTKEIGTLNQKMKELSGRRGAREKMNGQLEELRRTRSGLaldv 250
Cdd:PRK03918 500 ELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAEL---- 575
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663513256 251 kratDRINAREHKSRIDGLKEEIDELPdgPF-----PADSAQARLESLRKDISSLEDELGDLDEEIESLENEQSNLSldp 325
Cdd:PRK03918 576 ----LKELEELGFESVEELEERLKELE--PFyneylELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELR--- 646
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663513256 326 daegshssleaVRVSDLFERVTEVEHAnNLRDEKESLSdlELEEGFETRLKEAHSRHEEIVGKIEDLTER 395
Cdd:PRK03918 647 -----------KELEELEKKYSEEEYE-ELREEYLELS--RELAGLRAELEELEKRREEIKKTLEKLKEE 702
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
672-970 |
4.23e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 41.20 E-value: 4.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663513256 672 ELNDILAELDEEdQESATAVLAEITRRL-EIETELERLASAESVVEKIREAVNAACKSvgdgepsLDNLAIVYAEQLERA 750
Cdd:TIGR02168 271 ELRLEVSELEEE-IEELQKELYALANEIsRLEQQKQILRERLANLERQLEELEAQLEE-------LESKLDELAEELAEL 342
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663513256 751 KKAI-EARGKHDDLERQLIDKRPRAKRRNTKKRGLEDEATDLLASFKLgsddemgsavgtgkhrlnLEGEMENERGQFTN 829
Cdd:TIGR02168 343 EEKLeELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQ------------------LELQIASLNNEIER 404
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663513256 830 LAKR---WDKSWNDFENEIEGADPIEDEAICTEKNRRDESLGEEIADLQGQLDSLSAELLNLDEsdELTRKQADKKAILA 906
Cdd:TIGR02168 405 LEARlerLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELRE--ELEEAEQALDAAER 482
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 663513256 907 ELNEVNLRWAHLflvrfiiQRTREQYEGSHGSEVLIRASEHLERITGGRYTQILRVveDPGYQL 970
Cdd:TIGR02168 483 ELAQLQARLDSL-------ERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISV--DEGYEA 537
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
743-1065 |
5.76e-37 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 148.76 E-value: 5.76e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663513256 743 YAEQLERAKKAIEARGKHDDLERQLidkrprakrrntKKRGLEDEATDLLASFKLGSDDEMGSAVGTGKHRLNLEGEMEN 822
Cdd:COG4717 339 LLELLDRIEELQELLREAEELEEEL------------QLEELEQEIAALLAEAGVEDEEELRAALEQAEEYQELKEELEE 406
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663513256 823 ERGQFTNLAKrwdkswnDFENEIEGADPIEDEAICTEKNRRDESLGEEIADLQGQLDSLSAELLNLDESDELTRKQADKK 902
Cdd:COG4717 407 LEEQLEELLG-------ELEELLEALDEEELEEELEELEEELEELEEELEELREELAELEAELEQLEEDGELAELLQELE 479
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663513256 903 AILAELNEVNLRWAHLFLVRFIIQRTREQYEGSHGSEVLIRASEHLERITGGRYTQIlRVVEDPGYQLVEASGSYRSpiP 982
Cdd:COG4717 480 ELKAELRELAEEWAALKLALELLEEAREEYREERLPPVLERASEYFSRLTDGRYRLI-RIDEDLSLKVDTEDGRTRP--V 556
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663513256 983 PDLSRAAFAQVYLCIRLAYAEKGTHSSLPIILDDAYEGYDDERVPPALDILCELGKARQVILLSHHGHICEAAEERGASV 1062
Cdd:COG4717 557 EELSRGTREQLYLALRLALAELLAGEPLPLILDDAFVNFDDERLRAALELLAELAKGRQVIYFTCHEELVELFQEEGAHV 636
|
...
gi 663513256 1063 IQL 1065
Cdd:COG4717 637 IEL 639
|
|
| AAA_27 |
pfam13514 |
AAA domain; This domain is found in a number of double-strand DNA break proteins. This domain ... |
2-212 |
4.61e-15 |
|
AAA domain; This domain is found in a number of double-strand DNA break proteins. This domain contains a P-loop motif.
Pssm-ID: 433272 [Multi-domain] Cd Length: 207 Bit Score: 75.28 E-value: 4.61e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663513256 2 MRIDTIHVDKYGGLNDLTLQLVN---DFQVIKGLNEEGKTTLLAFIRGVFFGFSK------VFPHLKMrsapfftegeRM 72
Cdd:pfam13514 1 MRIRRLDLERYGPFTDRSLDFPAggpDLHLIYGPNEAGKSTALRAISDLLFGIPLrtpynfLHDYSDL----------RI 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663513256 73 GGRIEvmvelEGKERRYAIIRHTGTKQDgelsIRDLESNGLivgGEAVTLRdiILGGVDKTLFDSVFVLTVDDL----HD 148
Cdd:pfam13514 71 GATLE-----NADGETLEFRRRKGRKNT----LLDADGQPL---PDDVLAP--FLGGLDRETFERMFGLDHERLreggEA 136
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 663513256 149 LkALSKDEVAHALFSADSGLGlELPRELSAMQEQMDKLYNdEHKRGKQRQRILTARLNGLTKEI 212
Cdd:pfam13514 137 I-LEAEGDLGQALFAAGSGLA-GLRRVLEALDAEADALFK-PRGSSPRAFNQALARLDEAQREL 197
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
199-759 |
6.82e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 59.95 E-value: 6.82e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663513256 199 RILTARLNGLTKEIGTLNQKMKELSGRRGAREKmngQLEELRRTRSGLALDVKRATDRInaREHKSRIDGLKEEIDELPD 278
Cdd:COG1196 235 RELEAELEELEAELEELEAELEELEAELAELEA---ELEELRLELEELELELEEAQAEE--YELLAELARLEQDIARLEE 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663513256 279 GpfpADSAQARLESLRKDISSLEDELGDLDEEIESLENEQSnlsldpDAEGSHSSLEAVRVSDLFERVTEVEHANNLRDE 358
Cdd:COG1196 310 R---RRELEERLEELEEELAELEEELEELEEELEELEEELE------EAEEELEEAEAELAEAEEALLEAEAELAEAEEE 380
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663513256 359 KESLSDLELEEgfETRLKEAHSRHEEIVGKIEDLTEREDIANISLGKYEPQVLDAGLASEidgAITRRYSQHSDPLDRAK 438
Cdd:COG1196 381 LEELAEELLEA--LRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEE---EEEEALEEAAEEEAELE 455
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663513256 439 GEVKRIESDLKAALKSAGGMDAEVLDDLPLDAASISRLRASLSESGSTP-RSRFAQIQTLIALSALVLGLCIAFVLDEML 517
Cdd:COG1196 456 EEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEgFLEGVKAALLLAGLRGLAGAVAVLIGVEAA 535
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663513256 518 GGGGLALISLLLLILDRLENQGAEGAAELSGSVKKQLK----HLGLSSHASAKDLDRLVNSLSGAITHSEELSRAKSSRD 593
Cdd:COG1196 536 YEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRatflPLDKIRARAALAAALARGAIGAAVDLVASDLREADARY 615
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663513256 594 EVEGLYTAGIELLNRLVDDCGLEAVDEGASAAHLEGVLEDIMLTHRYAVIQVGVQNEELTKIHTSKGIFSGQLRDNTKEL 673
Cdd:COG1196 616 YVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELEL 695
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663513256 674 NDILAELDEEDQESATAVLAEITRRLEIETELERLASAESVVEKIREAVNAACKSVGDGEPSLDNLAIVYAEQLERAKKA 753
Cdd:COG1196 696 EEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLERE 775
|
....*.
gi 663513256 754 IEARGK 759
Cdd:COG1196 776 IEALGP 781
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
202-395 |
6.97e-09 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 60.31 E-value: 6.97e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663513256 202 TARLNGLTKEIGTLNQKMKELSGRRgarEKMNGQLEELRRTRSGLALDVKRATDRINAREHKSRIDGLKEEIDELPDGPF 281
Cdd:COG4913 609 RAKLAALEAELAELEEELAEAEERL---EALEAELDALQERREALQRLAEYSWDEIDVASAEREIAELEAELERLDASSD 685
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663513256 282 PADSAQARLESLRKDISSLEDELGDLDEEIESLENEQSNL-SLDPDAEGSHSSLEAVRVSDLFERVTEVeHANNLRDEKE 360
Cdd:COG4913 686 DLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAeEELDELQDRLEAAEDLARLELRALLEER-FAAALGDAVE 764
|
170 180 190
....*....|....*....|....*....|....*
gi 663513256 361 SlsdlELEEGFETRLKEAHSRHEEIVGKIEDLTER 395
Cdd:COG4913 765 R----ELRENLEERIDALRARLNRAEEELERAMRA 795
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
171-913 |
1.57e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 58.91 E-value: 1.57e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663513256 171 ELPRELSAMQEQMDKLyNDEHKRGKQRQRILTARLNGLTKEIGTLNQKMKELSGRRGA----REKMNGQLEELRRTRSGL 246
Cdd:TIGR02168 257 ELTAELQELEEKLEEL-RLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANlerqLEELEAQLEELESKLDEL 335
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663513256 247 ALDVKRATDRINarEHKSRIDGLKEEIDELPDGPFPADSA----QARLESLRKDISSLEDELGDLDEEIESLENEQSNLS 322
Cdd:TIGR02168 336 AEELAELEEKLE--ELKEELESLEAELEELEAELEELESRleelEEQLETLRSKVAQLELQIASLNNEIERLEARLERLE 413
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663513256 323 -----LDPDAEGSHSSLEAVRVSDLFERVTEVEhannlrdeKESLSDLELEEGFETRLKEAHSRHEEIVGKIEDLteRED 397
Cdd:TIGR02168 414 drrerLQQEIEELLKKLEEAELKELQAELEELE--------EELEELQEELERLEEALEELREELEEAEQALDAA--ERE 483
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663513256 398 IANISLGKYEPQVLDAGLASEIDG--AITRRYSQHSDPLDRAkGEVKRIESDLKAALKSAGG--MDAEVLDDLPLDAASI 473
Cdd:TIGR02168 484 LAQLQARLDSLERLQENLEGFSEGvkALLKNQSGLSGILGVL-SELISVDEGYEAAIEAALGgrLQAVVVENLNAAKKAI 562
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663513256 474 SRL------RASLSE----SGSTPRSRFAQIqtlIALSALVLGLCIAFVLDEMLGGGGLALISLLLLILDRLENqgaegA 543
Cdd:TIGR02168 563 AFLkqnelgRVTFLPldsiKGTEIQGNDREI---LKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVLVVDDLDN-----A 634
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663513256 544 AELSGSVKKQ----------LKHLGLSSHASAKdldrlvnSLSGAITHSEELSRAKSSRDEVEGLYTAGIELLNRLvddc 613
Cdd:TIGR02168 635 LELAKKLRPGyrivtldgdlVRPGGVITGGSAK-------TNSSILERRREIEELEEKIEELEEKIAELEKALAEL---- 703
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663513256 614 gLEAVDEgasaahLEGVLEDIMLTHRYAVIQVGVQNEELTKIHTSKGIFSGQLRDNTKELNDILAELDEEDQESATAVLA 693
Cdd:TIGR02168 704 -RKELEE------LEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEE 776
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663513256 694 EITRRLEIETELERLASAESVVEKIREAVNAACKSVGDGEPSLDNLAIVYaEQLERAKKAIEARgkHDDLERQLIDKRPR 773
Cdd:TIGR02168 777 LAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERL-ESLERRIAATERR--LEDLEEQIEELSED 853
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663513256 774 AKRRNTKKRGLEDEATDLLASFKLGSDDEMGSAVGTGKHRLNLE------GEMENERGQFTNLAKRWDKSWNDFENEIEG 847
Cdd:TIGR02168 854 IESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEelseelRELESKRSELRRELEELREKLAQLELRLEG 933
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 663513256 848 AdpiedeaicteKNRRD---ESLGEEIADLQGQLDSLSAELLnlDESDELTRKQADKKAILAELNEVNL 913
Cdd:TIGR02168 934 L-----------EVRIDnlqERLSEEYSLTLEEAEALENKIE--DDEEEARRRLKRLENKIKELGPVNL 989
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
170-392 |
1.73e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 55.46 E-value: 1.73e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663513256 170 LELPRELSAMQEQMDKLYnDEHKRGKQRQRILTARLNGLTKEIGTLnqkMKELSGRRGAREKMNGQLEELRRTRSglALD 249
Cdd:TIGR02169 677 QRLRERLEGLKRELSSLQ-SELRRIENRLDELSQELSDASRKIGEI---EKEIEQLEQEEEKLKERLEELEEDLS--SLE 750
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663513256 250 VKRATDRINAREHKSRIDGLKEEIDELPD--GPFPADSAQARLESLRKDISSLEDELGDLDEEIESLENEQSNLSLDPDA 327
Cdd:TIGR02169 751 QEIENVKSELKELEARIEELEEDLHKLEEalNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEY 830
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 663513256 328 EGSHSSLEAVRVSDLFERVTEVEHA-NNLRDEKESLsDLELEEgFETRLKEAHSRHEEIVGKIEDL 392
Cdd:TIGR02169 831 LEKEIQELQEQRIDLKEQIKSIEKEiENLNGKKEEL-EEELEE-LEAALRDLESRLGDLKKERDEL 894
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
2-287 |
4.35e-07 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 54.00 E-value: 4.35e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663513256 2 MRIDTIHVDKYGGLNDLTLQLVNDFQVIKGLNEEGKTTLLAFIRGVFFgfSKVFPHLKMRSAPFFTEGERMGGRIEV--- 78
Cdd:COG4717 1 MKIKELEIYGFGKFRDRTIEFSPGLNVIYGPNEAGKSTLLAFIRAMLL--ERLEKEADELFKPQGRKPELNLKELKElee 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663513256 79 -MVELEGKERRYAiiRHTGTKQDGELSIRDLESnglivggEAVTLRdiilggvdktlfdsvfvltvddlHDLKALSKDEV 157
Cdd:COG4717 79 eLKEAEEKEEEYA--ELQEELEELEEELEELEA-------ELEELR-----------------------EELEKLEKLLQ 126
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663513256 158 AHALFSADSglglELPRELSAMQEQMDKLYNDEHKRGKQRQRILTarlngLTKEIGTLNQKMKELsgRRGAREKMNGQLE 237
Cdd:COG4717 127 LLPLYQELE----ALEAELAELPERLEELEERLEELRELEEELEE-----LEAELAELQEELEEL--LEQLSLATEEELQ 195
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 663513256 238 ELRRTRSGLALDVKRATDRInaREHKSRIDGLKEEIDELPDGPFPADSAQ 287
Cdd:COG4717 196 DLAEELEELQQRLAELEEEL--EEAQEELEELEEELEQLENELEAAALEE 243
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
171-395 |
9.78e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 53.14 E-value: 9.78e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663513256 171 ELPRELSAMQEQMDKLYNDEHKRGKQRQRILTARLNGLTKEIGTLNQKMKELSGRRGAREKMNGQLEELRRTRSGLaldv 250
Cdd:PRK03918 500 ELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAEL---- 575
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663513256 251 kratDRINAREHKSRIDGLKEEIDELPdgPF-----PADSAQARLESLRKDISSLEDELGDLDEEIESLENEQSNLSldp 325
Cdd:PRK03918 576 ----LKELEELGFESVEELEERLKELE--PFyneylELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELR--- 646
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663513256 326 daegshssleaVRVSDLFERVTEVEHAnNLRDEKESLSdlELEEGFETRLKEAHSRHEEIVGKIEDLTER 395
Cdd:PRK03918 647 -----------KELEELEKKYSEEEYE-ELREEYLELS--RELAGLRAELEELEKRREEIKKTLEKLKEE 702
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
178-321 |
2.51e-05 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 46.84 E-value: 2.51e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663513256 178 AMQEQMDKLYndehkrgkQRQRILTaRLNGLTKEIGTL----NQKMKELSGRRGAREKMNGQLEELRRTRSGLALDVKRA 253
Cdd:COG1579 1 AMPEDLRALL--------DLQELDS-ELDRLEHRLKELpaelAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEV 71
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663513256 254 TDRInaREHKSRIDGLK--EEIDELpdgpfpadsaQARLESLRKDISSLEDELGDLDEEIESLENEQSNL 321
Cdd:COG1579 72 EARI--KKYEEQLGNVRnnKEYEAL----------QKEIESLKRRISDLEDEILELMERIEELEEELAEL 129
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
171-376 |
2.63e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 48.53 E-value: 2.63e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663513256 171 ELPRELSAMQEQMDKLYNDEhkrGKQRQRILTARLNGLTKEIGTLNQKMKELSGRRGAREKMNGQLEELRRTRSGLALDV 250
Cdd:TIGR02169 769 ELEEDLHKLEEALNDLEARL---SHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDL 845
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663513256 251 KratDRINAREhkSRIDGLKEEIDELpdgpfpadsaQARLESLRKDISSLEDELGDLDEEIESLENEQSN-------LSL 323
Cdd:TIGR02169 846 K---EQIKSIE--KEIENLNGKKEEL----------EEELEELEAALRDLESRLGDLKKERDELEAQLRElerkieeLEA 910
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 663513256 324 DPDAEGSHSSLEAVRVSDLFERVTEVEhANNLRDEKESLSDLELEEGFETRLK 376
Cdd:TIGR02169 911 QIEKKRKRLSELKAKLEALEEELSEIE-DPKGEDEEIPEEELSLEDVQAELQR 962
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
171-801 |
3.47e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 48.14 E-value: 3.47e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663513256 171 ELPRELSAMQEQMDKLYNDEHKRGKQRQRIlTARLNGLTKEIGTLNQKMKELSGRRGAR-----EKMNGQLEELRRTRSG 245
Cdd:TIGR02169 234 ALERQKEAIERQLASLEEELEKLTEEISEL-EKRLEEIEQLLEELNKKIKDLGEEEQLRvkekiGELEAEIASLERSIAE 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663513256 246 LALDVKRATDRInaREHKSRIDGLKEEIDELpdgpfpadsaQARLESLRKDISSLEDELGDLDEEIESLENEQSNLSLDP 325
Cdd:TIGR02169 313 KERELEDAEERL--AKLEAEIDKLLAEIEEL----------EREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEF 380
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663513256 326 DAEGSHSSLEAVRVSDLFERVTEVE-HANNLRDEKESLS----DLELE-EGFETRLKEAHSRHEEIVGKIEDLTEREDIA 399
Cdd:TIGR02169 381 AETRDELKDYREKLEKLKREINELKrELDRLQEELQRLSeelaDLNAAiAGIEAKINELEEEKEDKALEIKKQEWKLEQL 460
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663513256 400 NISLGKYEPQVLD------------AGLASEIDGA-ITRRYSQHSDPLDRAKGEVK---------------RIESDLKAA 451
Cdd:TIGR02169 461 AADLSKYEQELYDlkeeydrvekelSKLQRELAEAeAQARASEERVRGGRAVEEVLkasiqgvhgtvaqlgSVGERYATA 540
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663513256 452 LKSAGG--MDAEVLDDLPLDAASISRLRA-SLSESGSTPRSRFAQIQTLiaLSALVLGLCIAFVLDEM------------ 516
Cdd:TIGR02169 541 IEVAAGnrLNNVVVEDDAVAKEAIELLKRrKAGRATFLPLNKMRDERRD--LSILSEDGVIGFAVDLVefdpkyepafky 618
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663513256 517 ------------LGGGGLALISLLLLILDRLENQGA--EGAAELSG--SVKKQLKHLGLSSHASAKDLDRLVNSLSGAIT 580
Cdd:TIGR02169 619 vfgdtlvvedieAARRLMGKYRMVTLEGELFEKSGAmtGGSRAPRGgiLFSRSEPAELQRLRERLEGLKRELSSLQSELR 698
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663513256 581 HSEELSRAKSSR------------------DEVEGLYTAGIELLNRLVDDCGLEAVDEGASAAHLEGVLEDIMLT----- 637
Cdd:TIGR02169 699 RIENRLDELSQElsdasrkigeiekeieqlEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDlhkle 778
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663513256 638 -------HRYAVIQVGVQNEELTKIHTSKGIFSGQLRDNTKELNDILAELDEEDQESATAV--LAEIT-RRLEIETELE- 706
Cdd:TIGR02169 779 ealndleARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQeqRIDLKeQIKSIEKEIEn 858
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663513256 707 ---RLASAESVVEKIREAVNaacksvgDGEPSLDNLAivyAEQLERAKKAIEARGKHDDLERQLIDKRPRAKRRNTKKRG 783
Cdd:TIGR02169 859 lngKKEELEEELEELEAALR-------DLESRLGDLK---KERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEA 928
|
730
....*....|....*...
gi 663513256 784 LEDEATDLLASFKLGSDD 801
Cdd:TIGR02169 929 LEEELSEIEDPKGEDEEI 946
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
197-397 |
3.56e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 48.11 E-value: 3.56e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663513256 197 RQRI--LTARLNGLTKEIGTLNQKMKELSgrrgAREKMNGQLEELRRTRSGLALDVKRATDRINAREhkSRIDGLKEEID 274
Cdd:PRK02224 474 RERVeeLEAELEDLEEEVEEVEERLERAE----DLVEAEDRIERLEERREDLEELIAERRETIEEKR--ERAEELRERAA 547
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663513256 275 ELP----DGPFPADSAQARLESLRKDISSLEDELGDLDEEIESLENEQSNLSLDPDAEGshssleavRVSDLFERVTEVE 350
Cdd:PRK02224 548 ELEaeaeEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLERIRTLLAAIADAED--------EIERLREKREALA 619
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 663513256 351 HANNLRdeKESLSDL-----ELEEGF-ETRLKEAHSRH-------EEIVGKIEDLTERED 397
Cdd:PRK02224 620 ELNDER--RERLAEKrerkrELEAEFdEARIEEAREDKeraeeylEQVEEKLDELREERD 677
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
214-439 |
3.66e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.45 E-value: 3.66e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663513256 214 TLNQKMKELSGRRGAREKMNGQLEELRRTRSGLALDVKRATDRINAREhkSRIDGLKEEIDELpdgpfpadsaQARLESL 293
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALA--RRIRALEQELAAL----------EAELAEL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663513256 294 RKDISSLEDELGDLDEEIESLENEQSNLSLDPDAE---GSHSSLEAVRVSDLFERVTE--VEHANNLRDEKESLSDLELE 368
Cdd:COG4942 89 EKEIAELRAELEAQKEELAELLRALYRLGRQPPLAlllSPEDFLDAVRRLQYLKYLAParREQAEELRADLAELAALRAE 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663513256 369 ---------------EGFETRLKEAHSRHEEIVGKIEDLTEREDIANISLGKYEpQVLDAGLASEIDGAITRRYSQHSDP 433
Cdd:COG4942 169 leaeraeleallaelEEERAALEALKAERQKLLARLEKELAELAAELAELQQEA-EELEALIARLEAEAAAAAERTPAAG 247
|
....*.
gi 663513256 434 LDRAKG 439
Cdd:COG4942 248 FAALKG 253
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
201-451 |
4.87e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 47.34 E-value: 4.87e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663513256 201 LTARLNGLTKEIGTLNQKMKELSGRR----GAREKMNGQLEELRRTRSGL-----ALDVKRATDRINARE---HKSRIDG 268
Cdd:PRK02224 204 LHERLNGLESELAELDEEIERYEEQReqarETRDEADEVLEEHEERREELetleaEIEDLRETIAETEREreeLAEEVRD 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663513256 269 LKEEIDELPDgpfPADSAQARLESLRKDISSLEDELGDLDEEIESLENEQSNLSLDPDAEGSHSSLEAVRVSDLFERVTE 348
Cdd:PRK02224 284 LRERLEELEE---ERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEE 360
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663513256 349 vehannLRDEKESLsDLELEEGfETRLKEAHSRHEEIVGKIEDLTEREDIANISLGKYEPqvLDAGLASEidgaitrrys 428
Cdd:PRK02224 361 ------LREEAAEL-ESELEEA-REAVEDRREEIEELEEEIEELRERFGDAPVDLGNAED--FLEELREE---------- 420
|
250 260
....*....|....*....|...
gi 663513256 429 qhsdpLDRAKGEVKRIESDLKAA 451
Cdd:PRK02224 421 -----RDELREREAELEATLRTA 438
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
229-370 |
8.98e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 46.57 E-value: 8.98e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663513256 229 REKMNGQLEELRRTRSGLALDVKRATDRI-----NAREHKSRIDGLKEEIDELpdgpfpadsaQARLESLRKDISSLEDE 303
Cdd:PRK02224 316 REELEDRDEELRDRLEECRVAAQAHNEEAeslreDADDLEERAEELREEAAEL----------ESELEEAREAVEDRREE 385
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 663513256 304 LGDLDEEIESLENEQSNLSLDPDAEGSHSSLEAVRVSDLFERVTEVEhaNNLRDEKESLSDLE--LEEG 370
Cdd:PRK02224 386 IEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELE--ATLRTARERVEEAEalLEAG 452
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
171-394 |
1.37e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 46.20 E-value: 1.37e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663513256 171 ELPRELSAMQEQMDKLyNDEHKRGKQRQRILTARLNGLTKEIGTLNQKMKELSGRRGAREKmngQLEELRRTRSGLALDV 250
Cdd:TIGR02168 779 EAEAEIEELEAQIEQL-KEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATER---RLEDLEEQIEELSEDI 854
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663513256 251 KRATDRIN-----AREHKSRIDGLKEEIDELPDGpfpADSAQARLESLRKDISSLEDELGDLDEEIESLENEQSNLSLDp 325
Cdd:TIGR02168 855 ESLAAEIEeleelIEELESELEALLNERASLEEA---LALLRSELEELSEELRELESKRSELRRELEELREKLAQLELR- 930
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663513256 326 daegsHSSLEaVRVSDLFERVTE---------VEHANNLRDE----KESLSDLE-------------LEEgfetrLKEAH 379
Cdd:TIGR02168 931 -----LEGLE-VRIDNLQERLSEeysltleeaEALENKIEDDeeeaRRRLKRLEnkikelgpvnlaaIEE-----YEELK 999
|
250
....*....|....*
gi 663513256 380 SRHEEIVGKIEDLTE 394
Cdd:TIGR02168 1000 ERYDFLTAQKEDLTE 1014
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
567-910 |
5.30e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 44.26 E-value: 5.30e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663513256 567 DLDRLVNSLSGAITHSEELS-RAKSSRDEVEGLYTAgielLNRLVDDCGLEAVDEGASAAHLEGV------LEDIMLTHR 639
Cdd:PRK02224 259 EIEDLRETIAETEREREELAeEVRDLRERLEELEEE----RDDLLAEAGLDDADAEAVEARREELedrdeeLRDRLEECR 334
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663513256 640 YAVIQVGVQNEELTKIHTskgifsgQLRDNTKELNDILAELDEEDQESATAVLAEITRRLEIETELE-----------RL 708
Cdd:PRK02224 335 VAAQAHNEEAESLREDAD-------DLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEelrerfgdapvDL 407
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663513256 709 ASAESVVEKIREAVNAACKSVGDGEPSLDNL--AIVYAEQLERAKK----------------AIEARGKHDDLERQLIDK 770
Cdd:PRK02224 408 GNAEDFLEELREERDELREREAELEATLRTAreRVEEAEALLEAGKcpecgqpvegsphvetIEEDRERVEELEAELEDL 487
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663513256 771 RPRAKRRNTKKRGLED--EATDLLASFKLGSDDemgsavgTGKHRLNLEGEMENERGQFTNLAKRWDkswnDFENEIEga 848
Cdd:PRK02224 488 EEEVEEVEERLERAEDlvEAEDRIERLEERRED-------LEELIAERRETIEEKRERAEELRERAA----ELEAEAE-- 554
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 663513256 849 dpiEDEAICTEKNRRDESLGEEIADLQGQLDSLSAELLNLDESDELTRKQADKKAILAELNE 910
Cdd:PRK02224 555 ---EKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLERIRTLLAAIADAEDEIERLRE 613
|
|
| COG1340 |
COG1340 |
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown]; |
171-395 |
8.16e-04 |
|
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown];
Pssm-ID: 440951 [Multi-domain] Cd Length: 297 Bit Score: 42.59 E-value: 8.16e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663513256 171 ELPRELSAMQEQMDKLyNDEHKRGKQRQRILTARLNGLTKEIGTLNQKMKELsgrrgaREKMNgqleELRRTRSGLALDV 250
Cdd:COG1340 5 ELSSSLEELEEKIEEL-REEIEELKEKRDELNEELKELAEKRDELNAQVKEL------REEAQ----ELREKRDELNEKV 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663513256 251 KRATDRINarEHKSRIDGLKEEIDELpdgpfpaDSAQARLESLRKDISSLEdelgdldEEIESLENEQSNLSLDPDAEgs 330
Cdd:COG1340 74 KELKEERD--ELNEKLNELREELDEL-------RKELAELNKAGGSIDKLR-------KEIERLEWRQQTEVLSPEEE-- 135
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 663513256 331 hssleavrvSDLFERV----TEVEHANNLRDEKESLSDLeleegfETRLKEAHSRHEEIVGKIEDLTER 395
Cdd:COG1340 136 ---------KELVEKIkeleKELEKAKKALEKNEKLKEL------RAELKELRKEAEEIHKKIKELAEE 189
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
230-397 |
1.40e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.98 E-value: 1.40e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663513256 230 EKMNGQLEELRRTRSglalDVKRATDRINA----REHKSRIDGLKEEIDELPDG--PFPADSAQARLESLRKDISSLEDE 303
Cdd:COG4913 228 DALVEHFDDLERAHE----ALEDAREQIELlepiRELAERYAAARERLAELEYLraALRLWFAQRRLELLEAELEELRAE 303
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663513256 304 LGDLDEEIESLENEQSNL--SLDpDAEGSHSSLEAVRVSDLfERvtEVEHANNLRDEKES--------LSDLEL-----E 368
Cdd:COG4913 304 LARLEAELERLEARLDALreELD-ELEAQIRGNGGDRLEQL-ER--EIERLERELEERERrrarlealLAALGLplpasA 379
|
170 180
....*....|....*....|....*....
gi 663513256 369 EGFETRLKEAHSRHEEIVGKIEDLTERED 397
Cdd:COG4913 380 EEFAALRAEAAALLEALEEELEALEEALA 408
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
187-449 |
2.13e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 41.97 E-value: 2.13e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663513256 187 YNDEHKRGKQRQRILTARLNGLTKEIGTLNQKMKELsgrrgarEKMNGQLEELRRTRSGLALDVKRATDrinAREHKSRI 266
Cdd:PRK03918 305 YLDELREIEKRLSRLEEEINGIEERIKELEEKEERL-------EELKKKLKELEKRLEELEERHELYEE---AKAKKEEL 374
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663513256 267 DGLKEEIDELPDGPFPA--DSAQARLESLRKDISSLEDELGDLDEEIESLENEQSNLS------------LDPDAEGSHS 332
Cdd:PRK03918 375 ERLKKRLTGLTPEKLEKelEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKkakgkcpvcgreLTEEHRKELL 454
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663513256 333 SLEAVRVSDLFERVTEVEhaNNLRDEKESLSDLELEEGFETRLkeahSRHEEIVGKIEDLTERedianisLGKYEPQVLD 412
Cdd:PRK03918 455 EEYTAELKRIEKELKEIE--EKERKLRKELRELEKVLKKESEL----IKLKELAEQLKELEEK-------LKKYNLEELE 521
|
250 260 270
....*....|....*....|....*....|....*..
gi 663513256 413 AGlaseidgaiTRRYSQHSDPLDRAKGEVKRIESDLK 449
Cdd:PRK03918 522 KK---------AEEYEKLKEKLIKLKGEIKSLKKELE 549
|
|
| YbjD |
COG3593 |
Predicted ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM ... |
2-48 |
2.38e-03 |
|
Predicted ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM domains [Replication, recombination and repair];
Pssm-ID: 442812 [Multi-domain] Cd Length: 359 Bit Score: 41.53 E-value: 2.38e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*..
gi 663513256 2 MRIDTIHVDKYGGLNDLTLQLVNDFQVIKGLNEEGKTTLLAFIRGVF 48
Cdd:COG3593 1 MKLEKIKIKNFRSIKDLSIELSDDLTVLVGENNSGKSSILEALRLLL 47
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
229-396 |
2.41e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 41.84 E-value: 2.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663513256 229 REKMNGQLEELRRtrsgLALDVKRATDRInaREHKSRIDGLKEEIDELPDGPFP--ADSAQARLESLRKDISSLEDELGD 306
Cdd:PRK05771 38 EELSNERLRKLRS----LLTKLSEALDKL--RSYLPKLNPLREEKKKVSVKSLEelIKDVEEELEKIEKEIKELEEEISE 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663513256 307 LDEEIESLENEQS------NLSLDPDA--EGSHSSLEAVRVS-DLFER------------------------VTEVEHAN 353
Cdd:PRK05771 112 LENEIKELEQEIErlepwgNFDLDLSLllGFKYVSVFVGTVPeDKLEElklesdvenveyistdkgyvyvvvVVLKELSD 191
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 663513256 354 NLRDE--KESLSDLELEEG---------FETRLKEAHSRHEEIVGKIEDLTERE 396
Cdd:PRK05771 192 EVEEElkKLGFERLELEEEgtpselireIKEELEEIEKERESLLEELKELAKKY 245
|
|
| PLN03229 |
PLN03229 |
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional |
219-456 |
2.48e-03 |
|
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Pssm-ID: 178768 [Multi-domain] Cd Length: 762 Bit Score: 41.76 E-value: 2.48e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663513256 219 MKELSGRRGAREKMNGQLEELRRTrsglALDVKRATDRINAREHKSRIDGLKEEIDELPDGPFPADSAQARLESLRKDIS 298
Cdd:PLN03229 421 MKKREAVKTPVRELEGEVEKLKEQ----ILKAKESSSKPSELALNEMIEKLKKEIDLEYTEAVIAMGLQERLENLREEFS 496
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663513256 299 --SLEDELGD--LDEEIESLENE-QSNLSLDPDAEGSHSSLEAVRvsdlfervtEVEHANNLRDEKESLSDLELEegFET 373
Cdd:PLN03229 497 kaNSQDQLMHpvLMEKIEKLKDEfNKRLSRAPNYLSLKYKLDMLN---------EFSRAKALSEKKSKAEKLKAE--INK 565
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663513256 374 RLKEAHSRhEEIVGKIEDLteREDIANISLGKYEPqvLDAGLASEIdgaitrrysqhsdplDRAKGEvkrIESDLKAALK 453
Cdd:PLN03229 566 KFKEVMDR-PEIKEKMEAL--KAEVASSGASSGDE--LDDDLKEKV---------------EKMKKE---IELELAGVLK 622
|
...
gi 663513256 454 SAG 456
Cdd:PLN03229 623 SMG 625
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
171-439 |
3.65e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.90 E-value: 3.65e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663513256 171 ELPRELSAMQEQMDKLyNDEHKRGKQRQRILTARLNGLTKEIGTLNQKMKELSGRRGAREKmngQLEELRRTRSGLALDV 250
Cdd:COG4942 24 EAEAELEQLQQEIAEL-EKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEA---ELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663513256 251 KRATDRINAREHKSRIDGLKEEIDEL--PDGPFPADSAQARLESL----RKDISSLEDELGDLDEEIESLENEQSNLSld 324
Cdd:COG4942 100 EAQKEELAELLRALYRLGRQPPLALLlsPEDFLDAVRRLQYLKYLaparREQAEELRADLAELAALRAELEAERAELE-- 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663513256 325 pdaegshssleavrvSDLFERVTEVEHANNLRDEKES-LSDLELEEG-FETRLKEAHSRHEEIVGKIEDLTEREDIANIS 402
Cdd:COG4942 178 ---------------ALLAELEEERAALEALKAERQKlLARLEKELAeLAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
250 260 270
....*....|....*....|....*....|....*..
gi 663513256 403 LGKYEPQVLDAGLASEIDGAITRRYSQHSDPLDRAKG 439
Cdd:COG4942 243 TPAAGFAALKGKLPWPVSGRVVRRFGERDGGGGRNKG 279
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
672-970 |
4.23e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 41.20 E-value: 4.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663513256 672 ELNDILAELDEEdQESATAVLAEITRRL-EIETELERLASAESVVEKIREAVNAACKSvgdgepsLDNLAIVYAEQLERA 750
Cdd:TIGR02168 271 ELRLEVSELEEE-IEELQKELYALANEIsRLEQQKQILRERLANLERQLEELEAQLEE-------LESKLDELAEELAEL 342
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663513256 751 KKAI-EARGKHDDLERQLIDKRPRAKRRNTKKRGLEDEATDLLASFKLgsddemgsavgtgkhrlnLEGEMENERGQFTN 829
Cdd:TIGR02168 343 EEKLeELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQ------------------LELQIASLNNEIER 404
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663513256 830 LAKR---WDKSWNDFENEIEGADPIEDEAICTEKNRRDESLGEEIADLQGQLDSLSAELLNLDEsdELTRKQADKKAILA 906
Cdd:TIGR02168 405 LEARlerLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELRE--ELEEAEQALDAAER 482
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 663513256 907 ELNEVNLRWAHLflvrfiiQRTREQYEGSHGSEVLIRASEHLERITGGRYTQILRVveDPGYQL 970
Cdd:TIGR02168 483 ELAQLQARLDSL-------ERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISV--DEGYEA 537
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
171-321 |
4.46e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.05 E-value: 4.46e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663513256 171 ELPRELSAMQEQMDKLyndEHKRGKQRQRILTA----------RLNGLTKEIGTLNQKMKElsgRRGAREKMNGQLEELr 240
Cdd:COG4913 299 ELRAELARLEAELERL---EARLDALREELDELeaqirgnggdRLEQLEREIERLERELEE---RERRRARLEALLAAL- 371
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663513256 241 rtrsGLALDVKRATDRINAREHKSRIDGLKEEIDELpdgpfpadsaQARLESLRKDISSLEDELGDLDEEIESLENEQSN 320
Cdd:COG4913 372 ----GLPLPASAEEFAALRAEAAALLEALEEELEAL----------EEALAEAEAALRDLRRELRELEAEIASLERRKSN 437
|
.
gi 663513256 321 L 321
Cdd:COG4913 438 I 438
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
175-328 |
4.47e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 40.58 E-value: 4.47e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663513256 175 ELSAMQEQMDKLyNDEHKRGKQRQRILTARLNGLTKEIGTLNQKMKElsgrrgAREKMNGQLEELRRTRSGLAL------ 248
Cdd:COG3883 38 ELDALQAELEEL-NEEYNELQAELEALQAEIDKLQAEIAEAEAEIEE------RREELGERARALYRSGGSVSYldvllg 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663513256 249 --DVKRATDRINARE-----HKSRIDGLKEEIDELpdgpfpaDSAQARLESLRKDISSLEDELGDLDEEIESLENEQSNL 321
Cdd:COG3883 111 seSFSDFLDRLSALSkiadaDADLLEELKADKAEL-------EAKKAELEAKLAELEALKAELEAAKAELEAQQAEQEAL 183
|
....*..
gi 663513256 322 SLDPDAE 328
Cdd:COG3883 184 LAQLSAE 190
|
|
| AAA_23 |
pfam13476 |
AAA domain; |
7-115 |
9.90e-03 |
|
AAA domain;
Pssm-ID: 463890 [Multi-domain] Cd Length: 190 Bit Score: 38.63 E-value: 9.90e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663513256 7 IHVDKYGGLNDLTLQLVNDFQVIKGLNEEGKTTLLAFIRGVFFGF----SKVFPHLKMRSAPFFTEGERMGGRIEVMVEL 82
Cdd:pfam13476 1 LTIENFRSFRDQTIDFSKGLTLITGPNGSGKTTILDAIKLALYGKtsrlKRKSGGGFVKGDIRIGLEGKGKAYVEITFEN 80
|
90 100 110
....*....|....*....|....*....|...
gi 663513256 83 EGKERRYAIIRHTGTKQDGELSIRDLESNGLIV 115
Cdd:pfam13476 81 NDGRYTYAIERSRELSKKKGKTKKKEILEILEI 113
|
|
|