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Conserved domains on  [gi|659680964|gb|AID67879|]
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ribosomal protein S16 (chloroplast) [prasinophyte sp. MBIC10622]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
RpsP COG0228
Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S16 ...
 1-74 2.70e-31

Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S16 is part of the Pathway/BioSystem: Ribosome 30S subunit


:

Pssm-ID: 439998  Cd Length: 76  Bit Score: 103.97  E-value: 2.70e-31
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 659680964  1 MVKIRLKRLGRKKAPFYRIIAIDSRERRQGEAIMELGWYNPLTDD--FQFNRKQVLRFLKTGAQPTATVAGLMKKA 74
Cdd:COG0228   1 MVKIRLARGGAKKRPFYRIVVADSRSPRDGRFIERIGFYNPLTNParIKLDEERAQYWLSKGAQPTDTVAKLLKKA 76
 
Name Accession Description Interval E-value
RpsP COG0228
Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S16 ...
 1-74 2.70e-31

Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S16 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439998  Cd Length: 76  Bit Score: 103.97  E-value: 2.70e-31
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 659680964  1 MVKIRLKRLGRKKAPFYRIIAIDSRERRQGEAIMELGWYNPLTDD--FQFNRKQVLRFLKTGAQPTATVAGLMKKA 74
Cdd:COG0228   1 MVKIRLARGGAKKRPFYRIVVADSRSPRDGRFIERIGFYNPLTNParIKLDEERAQYWLSKGAQPTDTVAKLLKKA 76
rps16 CHL00005
ribosomal protein S16
 1-76 1.30e-28

ribosomal protein S16


Pssm-ID: 176950  Cd Length: 82  Bit Score: 97.40  E-value: 1.30e-28
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 659680964  1 MVKIRLKRLGRKKAPFYRIIAIDSRERRQGEAIMELGWYNPLTDDFQFNRKQVLRFLKTGAQPTATVAGLMKKAQL 76
Cdd:CHL00005  1 MVKLRLKRCGRKQQAVYRIVAIDVRSRREGRDLEKVGFYDPIKNQTYLNVPAILYFLEKGAQPTETVYDILKKAEV 76
S16 TIGR00002
ribosomal protein S16; This model describes ribosomal S16 of bacteria and organelles. [Protein ...
 2-76 8.18e-26

ribosomal protein S16; This model describes ribosomal S16 of bacteria and organelles. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 272848  Cd Length: 78  Bit Score: 90.38  E-value: 8.18e-26
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 659680964   2 VKIRLKRLGRKKAPFYRIIAIDSRERRQGEAIMELGWYNPLT--DDFQFNRKQVLRFLKTGAQPTATVAGLMKKAQL 76
Cdd:TIGR00002  1 VKIRLKRGGRKKRPFYRIVVADSRSRRDGRYIEELGFYNPITkeDLVKLNVERIKHWLSKGAQPTDTVRKLLKKAGV 77
Ribosomal_S16 pfam00886
Ribosomal protein S16;
8-64 1.41e-18

Ribosomal protein S16;


Pssm-ID: 459981  Cd Length: 61  Bit Score: 71.25  E-value: 1.41e-18
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 659680964   8 RLGRKKAPFYRIIAIDSRERRQGEAIMELGWYNPLTDD----FQFNRKQVLRFLKTGAQPT 64
Cdd:pfam00886  1 RMGRKKRPFYRIVVADSRSPRDGRFIEELGTYNPLAEPgeprVKLDEERIKYWLGVGAQPT 61
 
Name Accession Description Interval E-value
RpsP COG0228
Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S16 ...
 1-74 2.70e-31

Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S16 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439998  Cd Length: 76  Bit Score: 103.97  E-value: 2.70e-31
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 659680964  1 MVKIRLKRLGRKKAPFYRIIAIDSRERRQGEAIMELGWYNPLTDD--FQFNRKQVLRFLKTGAQPTATVAGLMKKA 74
Cdd:COG0228   1 MVKIRLARGGAKKRPFYRIVVADSRSPRDGRFIERIGFYNPLTNParIKLDEERAQYWLSKGAQPTDTVAKLLKKA 76
rps16 CHL00005
ribosomal protein S16
 1-76 1.30e-28

ribosomal protein S16


Pssm-ID: 176950  Cd Length: 82  Bit Score: 97.40  E-value: 1.30e-28
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 659680964  1 MVKIRLKRLGRKKAPFYRIIAIDSRERRQGEAIMELGWYNPLTDDFQFNRKQVLRFLKTGAQPTATVAGLMKKAQL 76
Cdd:CHL00005  1 MVKLRLKRCGRKQQAVYRIVAIDVRSRREGRDLEKVGFYDPIKNQTYLNVPAILYFLEKGAQPTETVYDILKKAEV 76
S16 TIGR00002
ribosomal protein S16; This model describes ribosomal S16 of bacteria and organelles. [Protein ...
 2-76 8.18e-26

ribosomal protein S16; This model describes ribosomal S16 of bacteria and organelles. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 272848  Cd Length: 78  Bit Score: 90.38  E-value: 8.18e-26
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 659680964   2 VKIRLKRLGRKKAPFYRIIAIDSRERRQGEAIMELGWYNPLT--DDFQFNRKQVLRFLKTGAQPTATVAGLMKKAQL 76
Cdd:TIGR00002  1 VKIRLKRGGRKKRPFYRIVVADSRSRRDGRYIEELGFYNPITkeDLVKLNVERIKHWLSKGAQPTDTVRKLLKKAGV 77
rpsP PRK14520
30S ribosomal protein S16; Provisional
 2-73 3.52e-19

30S ribosomal protein S16; Provisional


Pssm-ID: 184724 [Multi-domain]  Cd Length: 155  Bit Score: 75.50  E-value: 3.52e-19
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 659680964   2 VKIRLKRLGRKKAPFYRIIAIDSRERRQGEAIMELGWYNPLTDD--FQFNRKQVLRFLKTGAQPTATVAGLMKK 73
Cdd:PRK14520   3 VKIKLKRLGKIRNPQYRIVVADSRTKRDGRAIEEIGRYHPKEEPslIEIDSERAQYWLSVGAQPTEPVLALLKI 76
Ribosomal_S16 pfam00886
Ribosomal protein S16;
8-64 1.41e-18

Ribosomal protein S16;


Pssm-ID: 459981  Cd Length: 61  Bit Score: 71.25  E-value: 1.41e-18
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 659680964   8 RLGRKKAPFYRIIAIDSRERRQGEAIMELGWYNPLTDD----FQFNRKQVLRFLKTGAQPT 64
Cdd:pfam00886  1 RMGRKKRPFYRIVVADSRSPRDGRFIEELGTYNPLAEPgeprVKLDEERIKYWLGVGAQPT 61
rpsP PRK14521
30S ribosomal protein S16; Provisional
 2-67 3.43e-17

30S ribosomal protein S16; Provisional


Pssm-ID: 237744 [Multi-domain]  Cd Length: 186  Bit Score: 71.35  E-value: 3.43e-17
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 659680964   2 VKIRLKRLGRKKAPFYRIIAIDSRERRQGEAIMELGWYNPLTD----DFQFNRkqVLRFLKTGAQPTATV 67
Cdd:PRK14521   3 VKIRLQRHGRKGKAFYWIVAADSRAPRDGKFIEKIGTYNPNTNpatvDLNFDR--AVYWLMNGAQPTDTA 70
rpsP PRK14522
30S ribosomal protein S16; Provisional
 2-73 6.78e-08

30S ribosomal protein S16; Provisional


Pssm-ID: 172988 [Multi-domain]  Cd Length: 116  Bit Score: 45.76  E-value: 6.78e-08
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 659680964   2 VKIRLKRLGRKKAPFYRIIAIDSRERRQGEAIMELGWYNP-LTDDFQFNRKQVLRFLKTGAQPTATVAGLMKK 73
Cdd:PRK14522   3 LKIRLRQQGRRNHVVYRLVLADVESPRDGKYIELLGWYDPhSEQNYQLKSERIFYWLNQGAELTEKAGALVKQ 75
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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