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Conserved domains on  [gi|659122407|ref|XP_008461127|]
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protein POST-ILLUMINATION CHLOROPHYLL FLUORESCENCE INCREASE, chloroplastic [Cucumis melo]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
MPEG1_P2 super family cl45569
P2 domain of macrophage-expressed gene 1 protein (MPEG1) and similar proteins; ...
254-274 7.15e-06

P2 domain of macrophage-expressed gene 1 protein (MPEG1) and similar proteins; Macrophage-expressed gene 1 protein (MPEG1), also called perforin-2 (P-2) or macrophage gene 1 protein (Mpg-1), is a pore-forming, antibacterial protein with broad-spectrum activity. It is a major antibacterial effector protein of the innate immune system in phagocytic as well as tissue forming cells. It plays an essential role in intracellular defense of parenchymal cells and phagocytes against pathogenic bacteria by inserting into the bacterial surface to form pores. This model corresponds to a unique membrane bound P2 domain of MPEG1, which helps to stabilize the pre-pore state by swapping between monomers and enables MPEG1 to bind its targeted membrane.


The actual alignment was detected with superfamily member cd22579:

Pssm-ID: 439345  Cd Length: 287  Bit Score: 46.49  E-value: 7.15e-06
                         10        20
                 ....*....|....*....|.
gi 659122407 254 GCTDPSSHLFNPLANVDDGSC 274
Cdd:cd22579    3 GCTDPDSPNFNFQANVDDGSC 23
 
Name Accession Description Interval E-value
MPEG1_P2 cd22579
P2 domain of macrophage-expressed gene 1 protein (MPEG1) and similar proteins; ...
254-274 7.15e-06

P2 domain of macrophage-expressed gene 1 protein (MPEG1) and similar proteins; Macrophage-expressed gene 1 protein (MPEG1), also called perforin-2 (P-2) or macrophage gene 1 protein (Mpg-1), is a pore-forming, antibacterial protein with broad-spectrum activity. It is a major antibacterial effector protein of the innate immune system in phagocytic as well as tissue forming cells. It plays an essential role in intracellular defense of parenchymal cells and phagocytes against pathogenic bacteria by inserting into the bacterial surface to form pores. This model corresponds to a unique membrane bound P2 domain of MPEG1, which helps to stabilize the pre-pore state by swapping between monomers and enables MPEG1 to bind its targeted membrane.


Pssm-ID: 439345  Cd Length: 287  Bit Score: 46.49  E-value: 7.15e-06
                         10        20
                 ....*....|....*....|.
gi 659122407 254 GCTDPSSHLFNPLANVDDGSC 274
Cdd:cd22579    3 GCTDPDSPNFNFQANVDDGSC 23
 
Name Accession Description Interval E-value
MPEG1_P2 cd22579
P2 domain of macrophage-expressed gene 1 protein (MPEG1) and similar proteins; ...
254-274 7.15e-06

P2 domain of macrophage-expressed gene 1 protein (MPEG1) and similar proteins; Macrophage-expressed gene 1 protein (MPEG1), also called perforin-2 (P-2) or macrophage gene 1 protein (Mpg-1), is a pore-forming, antibacterial protein with broad-spectrum activity. It is a major antibacterial effector protein of the innate immune system in phagocytic as well as tissue forming cells. It plays an essential role in intracellular defense of parenchymal cells and phagocytes against pathogenic bacteria by inserting into the bacterial surface to form pores. This model corresponds to a unique membrane bound P2 domain of MPEG1, which helps to stabilize the pre-pore state by swapping between monomers and enables MPEG1 to bind its targeted membrane.


Pssm-ID: 439345  Cd Length: 287  Bit Score: 46.49  E-value: 7.15e-06
                         10        20
                 ....*....|....*....|.
gi 659122407 254 GCTDPSSHLFNPLANVDDGSC 274
Cdd:cd22579    3 GCTDPDSPNFNFQANVDDGSC 23
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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