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Conserved domains on  [gi|659105911|ref|XP_008453204|]
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mini zinc finger protein 3-like [Cucumis melo]

Protein Classification

zinc-finger homeodomain protein( domain architecture ID 10521144)

zinc-finger homeodomain (ZHD) protein may act as a transcription factor that plays regulatory roles in floral development

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ZF-HD_dimer pfam04770
ZF-HD protein dimerization region; This family of proteins has are plant transcription factors, ...
 30-83 1.57e-30

ZF-HD protein dimerization region; This family of proteins has are plant transcription factors, and have been named ZF-HD for zinc finger homeodomain proteins, on the basis of similarity to proteins of known structure. This region is thought to be involved in the formation of homo and heterodimers, and may form a zinc finger.


:

Pssm-ID: 398439  Cd Length: 55  Bit Score: 102.33  E-value: 1.57e-30
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 659105911  30 VRYAECQKNHAAKLGGFAVDGCREFMARGEDGTEEALNCAACGCHRNFHRREVD 83
Cdd:pfam04770  2 VRYRECLRNHAASIGGHAVDGCGEFMPSGEEGTPEALKCAACGCHRNFHRREIE 55
 
Name Accession Description Interval E-value
ZF-HD_dimer pfam04770
ZF-HD protein dimerization region; This family of proteins has are plant transcription factors, ...
 30-83 1.57e-30

ZF-HD protein dimerization region; This family of proteins has are plant transcription factors, and have been named ZF-HD for zinc finger homeodomain proteins, on the basis of similarity to proteins of known structure. This region is thought to be involved in the formation of homo and heterodimers, and may form a zinc finger.


Pssm-ID: 398439  Cd Length: 55  Bit Score: 102.33  E-value: 1.57e-30
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 659105911  30 VRYAECQKNHAAKLGGFAVDGCREFMARGEDGTEEALNCAACGCHRNFHRREVD 83
Cdd:pfam04770  2 VRYRECLRNHAASIGGHAVDGCGEFMPSGEEGTPEALKCAACGCHRNFHRREIE 55
ZF_HD_prot_N TIGR01566
ZF-HD homeobox protein Cys/His-rich dimerization domain; This model describes a 54-residue ...
 31-82 1.75e-21

ZF-HD homeobox protein Cys/His-rich dimerization domain; This model describes a 54-residue domain found in the N-terminal region of plant proteins, the vast majority of which contain a ZF-HD class homeobox domain toward the C-terminus. The region between the two domains typically is rich in low complexity sequence. The companion ZF-HD homeobox domain is described in model TIGR01565.


Pssm-ID: 130629  Cd Length: 53  Bit Score: 79.51  E-value: 1.75e-21
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 659105911  31 RYAECQKNHAAKLGGFAVDGCREFMAR-GEDGTEEALNCAACGCHRNFHRREV 82
Cdd:TIGR01566  1 LYKECLKNHAASIGGHALDGCGEFMPSsGEEGDPESLTCAACGCHRNFHRKEP 53
 
Name Accession Description Interval E-value
ZF-HD_dimer pfam04770
ZF-HD protein dimerization region; This family of proteins has are plant transcription factors, ...
 30-83 1.57e-30

ZF-HD protein dimerization region; This family of proteins has are plant transcription factors, and have been named ZF-HD for zinc finger homeodomain proteins, on the basis of similarity to proteins of known structure. This region is thought to be involved in the formation of homo and heterodimers, and may form a zinc finger.


Pssm-ID: 398439  Cd Length: 55  Bit Score: 102.33  E-value: 1.57e-30
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 659105911  30 VRYAECQKNHAAKLGGFAVDGCREFMARGEDGTEEALNCAACGCHRNFHRREVD 83
Cdd:pfam04770  2 VRYRECLRNHAASIGGHAVDGCGEFMPSGEEGTPEALKCAACGCHRNFHRREIE 55
ZF_HD_prot_N TIGR01566
ZF-HD homeobox protein Cys/His-rich dimerization domain; This model describes a 54-residue ...
 31-82 1.75e-21

ZF-HD homeobox protein Cys/His-rich dimerization domain; This model describes a 54-residue domain found in the N-terminal region of plant proteins, the vast majority of which contain a ZF-HD class homeobox domain toward the C-terminus. The region between the two domains typically is rich in low complexity sequence. The companion ZF-HD homeobox domain is described in model TIGR01565.


Pssm-ID: 130629  Cd Length: 53  Bit Score: 79.51  E-value: 1.75e-21
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 659105911  31 RYAECQKNHAAKLGGFAVDGCREFMAR-GEDGTEEALNCAACGCHRNFHRREV 82
Cdd:TIGR01566  1 LYKECLKNHAASIGGHALDGCGEFMPSsGEEGDPESLTCAACGCHRNFHRKEP 53
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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