|
Name |
Accession |
Description |
Interval |
E-value |
| secD |
PRK12933 |
protein translocase subunit SecD; |
19-605 |
0e+00 |
|
protein translocase subunit SecD;
Pssm-ID: 183831 [Multi-domain] Cd Length: 604 Bit Score: 659.07 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658758175 19 YIAMLIVLVLLAISALPNLYRNKSWLHVSNAphseTQAVPSTNALVTFLNNQGLKVEQGLNNQTSINILLNEPT-KSAQA 97
Cdd:PRK12933 18 YVVLIVTIIILLLSAIPTWYGEDAAVQVSAK----AGLLLNVVELRQLLQAQGINVKRIDQKEGKTLIVLDDDSqQSQAK 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658758175 98 QAAIKAQYPNTQVKIVEHATSPLWLQEFGLSPIKLGLDLNGGVLFVLDVDLDKAIDEQLVSAYQQAKSIIIKQKAHGLKV 177
Cdd:PRK12933 94 TLLSSMVKEPKELTLSLASAAPKWLQNMGFSPIKLGLDLRGGVQFLLDVDVDPVYQEQRDALVDSVRQFLREQRIRGVSV 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658758175 178 LQTGHG-FEINAHPNGAKKltPVINELQSRFANLAVSttsNGDIKNAKFTYSEQGRSNFDKEVMSQTLTTLRSRIEELGI 256
Cdd:PRK12933 174 RLDDSDqLAVTTPDNDARS--AVRQFIQQNYPGWQVT---NSDDRGLQLKLSQQEKTKFRNLTVQQNLQIMRSRIEELGI 248
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658758175 257 TEAVTQRQGKNRIRIELPGVQDPTEAKRIIGATASLGFYQLKE---IGGQTFDMQSGGSIKLDPVPIFTGEHINNATIGR 333
Cdd:PRK12933 249 TEALVQRQGEHRIRIELPGVQDPAAAKNVIGATASLAFYEVKEsgsVNAKVLKDKNGRPVYVARRPVLGGEHIVDARASL 328
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658758175 334 DDWGKPLVQLSLDGQGGDAMSAFSKANIGKPMATVYSEYSQNAKGETVKKSEVINVANIAQHLSSRFSITNMKSQQAAAD 413
Cdd:PRK12933 329 GEMGMAEVNISLDRAGGKKMSDFSRDNIGKPMATSYSEYSRDEQGKTKQSEEVISVATIQSQLGDRFRITGAGSYQEAQQ 408
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658758175 414 LALLLRAGSLTAPVTIVHEQTIGPSLGQENITNGLAALMLGMGITLAFMAMWYRRLGLIANVALLLNLTSLVGLMSLLPG 493
Cdd:PRK12933 409 LALLLRAGSLTAPVTIVEERTIGPSLGAENIENGFAALALGMGITLLFMALWYRRLGWVANVALIANMVCLFGLLALIPG 488
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658758175 494 VVLTLPGIAGLVLTIGMAVDTNVIIFERIKEERRKGRSAYQAIQEGYKQAANTIFDANITTMITALILYGIGYGPVKGFA 573
Cdd:PRK12933 489 AVLTLPGIAGLVLTVGMAVDTNVLIFERIKDKLKEGRSFAQAIDTGFDSAFSTIFDANFTTMITAVVLYSIGNGPIQGFA 568
|
570 580 590
....*....|....*....|....*....|..
gi 658758175 574 ITLALGLITSVFTGVYVSKVLSQTVYLKMAKK 605
Cdd:PRK12933 569 LTLGLGLLTSMFTGIFASRALINLVYGRDARR 600
|
|
| secD |
PRK05812 |
preprotein translocase subunit SecD; Reviewed |
116-609 |
2.30e-163 |
|
preprotein translocase subunit SecD; Reviewed
Pssm-ID: 235615 [Multi-domain] Cd Length: 462 Bit Score: 474.71 E-value: 2.30e-163
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658758175 116 ATSPLWLQEFGLSPIKLGLDLNGGVLFVLDVDLDKAIDEQLVSAYQQAKSIIIKQKAHGLKVLQTghgfeiNAHPNGAKK 195
Cdd:PRK05812 27 PATPEWLPALGAKPMKLGLDLRGGVHFLLEVDMDDALKKRLESLADDLRSLLREKKIRYGGVEIT------FRDAEDRDK 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658758175 196 LTPVINELQSrfanlavsttsngdiknakftYSEQGRSNFDKEVMSQTLTTLRSRIEELGITEAVTQRQGKNRIRIELPG 275
Cdd:PRK05812 101 AIALLRKLSS---------------------LTEAELKEITEEALEQAIEIIRNRVNELGVAEPVIQRQGADRIVVELPG 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658758175 276 VQDPTEAKRIIGATASLGFYQLKeiggqtfdmqsggsikldpvPIFTGEHINNATIGRDDWGKPLVQLSLDGQGGDAMSA 355
Cdd:PRK05812 160 VQDTARAKEILGKTATLEFRLVP--------------------VILTGDDITDASASFDQQGQPVVNITLDSEGAKKFAD 219
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658758175 356 FSKANIGKPMATVYseysqnakgetvkKSEVINVANIAQHLS-SRFSITNMKSQQAAADLALLLRAGSLTAPVTIVHEQT 434
Cdd:PRK05812 220 ITKANIGKRMAIVL-------------DGEVISAPVIQSAITgGSAQITGNFTAEEARDLALLLRAGALPAPLEIVEERT 286
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658758175 435 IGPSLGQENITNGLAALMLGMGITLAFMAMWYRRLGLIANVALLLNLTSLVGLMSLLpGVVLTLPGIAGLVLTIGMAVDT 514
Cdd:PRK05812 287 IGPSLGADSIRAGLIAGLIGLALVLLFMILYYRLFGLIANIALVANLVLILAVLSLL-GATLTLPGIAGIVLTIGMAVDA 365
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658758175 515 NVIIFERIKEERRKGRSAYQAIQEGYKQAANTIFDANITTMITALILYGIGYGPVKGFAITLALGLITSVFTGVYVSKVL 594
Cdd:PRK05812 366 NVLIFERIREELREGRSLRSAIEAGFKRAFSTILDSNITTLIAAIILYALGTGPVKGFAVTLGIGILTSMFTAITVTRAL 445
|
490
....*....|....*
gi 658758175 595 SQTVYLKMAKKAGVN 609
Cdd:PRK05812 446 VNLLYGRRKRLKKLS 460
|
|
| SecD |
COG0342 |
Preprotein translocase subunit SecD [Intracellular trafficking, secretion, and vesicular ... |
120-608 |
3.88e-140 |
|
Preprotein translocase subunit SecD [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440111 [Multi-domain] Cd Length: 434 Bit Score: 414.51 E-value: 3.88e-140
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658758175 120 LWLQEFGLSPIKLGLDLNGGVLFVLDVDLDKAIDEQlvsayqqaksiiikqkahglkvlqtghgfeinahpngakkltpv 199
Cdd:COG0342 21 LVAPNGPAKPIKLGLDLQGGVHLLLEVDTDAALDED-------------------------------------------- 56
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658758175 200 inelqsrfanlavsttsngdiknakftysEQGRSNFDKEVMSQTLTTLRSRIEELGITEAVTQRQGKNRIRIELPGVQDP 279
Cdd:COG0342 57 -----------------------------GDGIREVTEEALDQAIEILRNRVNELGVSEPVIQRQGDDRIVVELPGVQDP 107
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658758175 280 TEAKRIIGATASLGFYQLKEI---------GGQTFDMQSGGSIKLDPVPIFTGEHINNATIGRDD-WGKPLVQLSLDGQG 349
Cdd:COG0342 108 AEAKELLGKTAKLEFRLVDDSadaqaavpaGSELLPCRDGQPYLLLGPVVLTGDDLTDASAGFDQqTGQPVVSFTLDSEG 187
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658758175 350 GDAMSAFSKANIGKPMATVYSEysqnakgetvkksEVINVANIAQHLSS-RFSITNMKSQQAAADLALLLRAGSLTAPVT 428
Cdd:COG0342 188 AKKFADATRENVGKPLAIVLDG-------------EVISAPVIQEPITGgSAQITGSFTVEEAQDLALLLRAGALPAPLE 254
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658758175 429 IVHEQTIGPSLGQENITNGLAALMLGMGITLAFMAMWYRRLGLIANVALLLNLTSLVGLMSLLpGVVLTLPGIAGLVLTI 508
Cdd:COG0342 255 IVEERTVGPTLGADSIEKGLIAGLIGLLLVALFMLLYYRLPGLVANIALALNVVLLLGVLSLL-GATLTLPGIAGIILTI 333
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658758175 509 GMAVDTNVIIFERIKEERRKGRSAYQAIQEGYKQAANTIFDANITTMITALILYGIGYGPVKGFAITLALGLITSVFTGV 588
Cdd:COG0342 334 GMAVDANVLIFERIREELRAGRSLRAAIEAGFKRAFSTILDANVTTLIAAVVLFVLGTGPVKGFAVTLILGILISMFTAV 413
|
490 500
....*....|....*....|.
gi 658758175 589 YVSKVLSQTVY-LKMAKKAGV 608
Cdd:COG0342 414 PVTRPLLNLLLgRRRLKKLGI 434
|
|
| secD |
TIGR01129 |
protein-export membrane protein SecD; Members of this family are highly variable in length ... |
224-594 |
8.48e-122 |
|
protein-export membrane protein SecD; Members of this family are highly variable in length immediately after the well-conserved motif LGLGLXGG at the amino-terminal end of this model. Archaeal homologs are not included in the seed and score between the trusted and noise cutoffs. SecD from Mycobacterium tuberculosis has a long Pro-rich insert. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273456 [Multi-domain] Cd Length: 397 Bit Score: 366.23 E-value: 8.48e-122
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658758175 224 KFTYSEQGRSNFDKEVMSQTLTTLRSRIEELGITEAVTQRQGKNRIRIELPGVQDPTEAKRIIGATASLGFYQ------- 296
Cdd:TIGR01129 22 VLKLSEAEVNAIRKDALEQVITILRNRVNALGVSEPVVQRQGKDRIVVELPGVTDTSRAKDILGGTATLEFRLvddests 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658758175 297 -------LKEIGGQTFDMQSG--GSIKLDPVPIFTGEHINNATIGRD-DWGKPLVQLSLDGQGGDAMSAFSKANIGKPMA 366
Cdd:TIGR01129 102 pddalagNVPAGSELLDSRSGdpKYYLLKKSPVLTGDHITDATSSVDqRSGQPVVSFSLDSEGARIFGDFTQANIGKRLA 181
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658758175 367 TVYSEYsqnakgetvkkseVINVANIAQHLS-SRFSITNMKSQQAAADLALLLRAGSLTAPVTIVHEQTIGPSLGQENIT 445
Cdd:TIGR01129 182 IVLDNK-------------VVSAPTIQEAITgGSGQITGNFTAEEANDLALVLRSGALPAPLQILEERTIGPSLGADSIE 248
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658758175 446 NGLAALMLGMGITLAFMAMWYRRLGLIANVALLLNLTSLVGLMSLLpGVVLTLPGIAGLVLTIGMAVDTNVIIFERIKEE 525
Cdd:TIGR01129 249 AGIKAGLIGLVLVLVFMILYYRLFGLIAAIALVINIVLILAILSAF-GATLTLPGIAGLILTIGMAVDANVLIYERIKEE 327
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 658758175 526 RRKGRSAYQAIQEGYKQAANTIFDANITTMITALILYGIGYGPVKGFAITLALGLITSVFTGVYVSKVL 594
Cdd:TIGR01129 328 LRLGKSVRQAIEAGFERAFSTIFDANITTLIAALILYVFGTGPVKGFAVTLAIGIIASLFTALVFTRLL 396
|
|
| PRK13024 |
PRK13024 |
bifunctional preprotein translocase subunit SecD/SecF; Reviewed |
234-605 |
9.24e-100 |
|
bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Pssm-ID: 237276 [Multi-domain] Cd Length: 755 Bit Score: 320.26 E-value: 9.24e-100
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658758175 234 NFDKEVMSQTLTTLRSRIEELGITEAVTQRQGKNRIRIELPGVQDPTEAKRIIGATASLGF---YQLKEIGG---QTFDM 307
Cdd:PRK13024 55 KADREALDSTVEVLRNRIDGLGVSEPNIQREGNNRIRVELPGVQDPERARELLGSTAKLTFrdvTDPPPPGVggpVVGPD 134
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658758175 308 QSGGSIKLDPVpIFTGEHI--NNATIGRDDWGKPLVQLSLDGQGGDAMSAFSKANI-----GKPMATVYseysqnakget 380
Cdd:PRK13024 135 EGKDTAVLNPV-LLSGDDLtdAGAKFDQDQTNRPSVSLKLKSEGAKKWAKVTEKNSkkgppNNRIAIVL----------- 202
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658758175 381 vkKSEVINVANIAQHLS-SRFSITNMKSQQAAADLALLLRAGSLTAPVTIVHEQTIGPSLGQENITNGLAALMLGMGITL 459
Cdd:PRK13024 203 --DPKVISAPTVNQPINgGSVQISGNFTVEEAKDLANLLNAGALPAPLKIIESRSVGPTLGQDAIDAGIIAGIIGFALIF 280
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658758175 460 AFMAMWYRRLGLIANVALLLNLTSLVGLMSLLpGVVLTLPGIAGLVLTIGMAVDTNVIIFERIKEERRKGRSAYQAIQEG 539
Cdd:PRK13024 281 LFMLVYYGLPGLIANIALLLYIFLTLGALSSL-GAVLTLPGIAGLVLGIGMAVDANVLIFERIKEELRKGKSLKKAFKKG 359
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 658758175 540 YKQAANTIFDANITTMITALILYGIGYGPVKGFAITLALGLITSVFTGVYVSKVLSQTVYLKMAKK 605
Cdd:PRK13024 360 FKNAFSTILDSNITTLIAAAILFFFGTGPVKGFATTLIIGILASLFTAVFLTRLLLELLVKRGDKK 425
|
|
| PRK14726 |
PRK14726 |
protein translocase subunit SecDF; |
116-586 |
4.25e-77 |
|
protein translocase subunit SecDF;
Pssm-ID: 237805 [Multi-domain] Cd Length: 855 Bit Score: 261.96 E-value: 4.25e-77
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658758175 116 ATSPLWLQEfglSPIKLGLDLNGGVLFVLDVDLDKAIDEQLVSAYQQAKSIIIKQKAH--GLkvlqTGHGFEINAHPNGA 193
Cdd:PRK14726 34 ASLPSWLPH---RQVTLGLDLQGGSHIVLKVERSDIVKDRLEETVANIRNALRDAGIRytGL----TGNGQTVQVRITDP 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658758175 194 KKLTPVINELQSRFANLAVSTTSNGDIKNAKFTYSEQGRSNFD----------KEVMSQTLTTLRSRIEELGITEAVTQR 263
Cdd:PRK14726 107 AQTQAAVDALKPLTAPVSAGGLGGSSIQELTLQEGGEGQLRLQltdagidyrvSSALTQSIEVVRRRVAELGTTEPLIRR 186
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658758175 264 QGKNRIRIELPGVQDPTEAKRIIGATASLGFYQLKEI--GGQTFDMQ--SGGSI--KLD--PVP-------IFTGEHINN 328
Cdd:PRK14726 187 QGDDRIVVQVPGLVDPQRLKNLLNQPAKLSFRLVDSSmpAQEALNGRppATSEVlySLDdpPVPylverraFVSGENLVD 266
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658758175 329 ATIGRDDW-GKPLVQLSLDGQGGDAMSAFSKANIGKPMATVYSeysqnakgetvkkSEVINVANIAQHLSS-RFSITNMK 406
Cdd:PRK14726 267 AQPVFDPQtNEPVVTFRLDAEGTQRFAQATQQNVGKHFAIVLD-------------GQVISAPVIDEAITGgEGRISGNF 333
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658758175 407 SQQAAADLALLLRAGSLTAPVTIVHEQTIGPSLGQENITNGLAALMLGMGITLAFMAMWYRRLGLIANVALLLNLTSLVG 486
Cdd:PRK14726 334 SEQGANDLAVLLRAGALPATLTVVEERTVGPGLGADSIAAGLVAGLIAAILVAALMIGFYGFLGVIAVIALIVNVVLIIA 413
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658758175 487 LMSLLpGVVLTLPGIAGLVLTIGMAVDTNVIIFERIKEERRKGRSAYQAIQEGYKQAANTIFDANITTMITALILYGIGY 566
Cdd:PRK14726 414 VLSLL-GATLTLPGIAGIVLTIGMAVDSNVLIYERIREEEKTGHSLIQALDRGFSRALATIVDANVTILIAAVILFFLGS 492
|
490 500
....*....|....*....|
gi 658758175 567 GPVKGFAITLALGLITSVFT 586
Cdd:PRK14726 493 GAVRGFAVTLAVGILTTVFT 512
|
|
| PRK13023 |
PRK13023 |
protein translocase subunit SecDF; |
240-594 |
4.19e-47 |
|
protein translocase subunit SecDF;
Pssm-ID: 171842 [Multi-domain] Cd Length: 758 Bit Score: 177.12 E-value: 4.19e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658758175 240 MSQTLTTLRSRIEELGITEAVTQRQGKNRIRIELPGVQDPTEAKRIIGATASLGFYQLKEI--------GGQTFDMQSGG 311
Cdd:PRK13023 69 LETTANIMRQRLEELGYGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLSFRAMDDTmspddairGTPPADSEIVY 148
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658758175 312 SIKLDPV-------PIFTGEHINNA--TIGRDDwGKPLVQLSLDGQGGDAMSAFSKANIGKPMATVYSeysqnakgetvk 382
Cdd:PRK13023 149 SFDDPPVgyllkktPILTGHDITDAkaSISADD-GQPVITLTLDDNGRRRLADLTAQGNENSFAIVVD------------ 215
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658758175 383 kSEVINVANIAQHL-SSRFSITNMKSQQAAADLALLLRAGSLTAPVTIVHEQTIGPSLGQENITNGLAALMLGMGITLAF 461
Cdd:PRK13023 216 -NQVVSAPTVSGPLdTSELQIEGAFDLQAANNMAVVLRSGALPQAVTVLEERTIASALGEDYASAAVLAALLAALVVGLF 294
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658758175 462 MAMWYRRLGLIANVALLLNLTSLVGLMSLLpGVVLTLPGIAGLVLTIGMAVDTNVIIFERIKEERRKGRSAYQAIQEGYK 541
Cdd:PRK13023 295 MVLSYGILGVIALVALVVNIIILTAVLSLI-GASISLASIAGLVLTIGLAVDAHILIYERVREDRRKGYSVVQAMESGFY 373
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|...
gi 658758175 542 QAANTIFDANITTMITALILYGIGYGPVKGFAITLALGLITSVFTGVYVSKVL 594
Cdd:PRK13023 374 RALSTIVDANLTTLIAALVLFLLGSGTVHGFALTVAIGIGTTLFTTLTFTRLL 426
|
|
| 2A0604s01 |
TIGR00916 |
protein-export membrane protein, SecD/SecF family; The SecA,SecB,SecD,SecE,SecF,SecG and SecY ... |
433-588 |
8.09e-47 |
|
protein-export membrane protein, SecD/SecF family; The SecA,SecB,SecD,SecE,SecF,SecG and SecY proteins form the protein translocation appartus in prokaryotes. This family is specific for the SecD and SecF proteins. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273336 [Multi-domain] Cd Length: 192 Bit Score: 163.20 E-value: 8.09e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658758175 433 QTIGPSLGQENITNGLAALMLGMGITLAFMAMWYRRLGLIANVALLLN-LTSLVGLMSLLpGVVLTLPGIAGLVLTIGMA 511
Cdd:TIGR00916 35 GTVGPTLGGELIKAGIIALLIGLVLVLLYMLLRYEWRGAIAAIAALVHdVILILGVLSLF-GATLTLPGIAGLLTIIGYS 113
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 658758175 512 VDTNVIIFERIKEERRK--GRSAYQAIQEGYKQAANTIFDANITTMITALILYGIGYGPVKGFAITLALGLITSVFTGV 588
Cdd:TIGR00916 114 VDDTVVIFDRIREELRKykGRTFREAINLGINQTLSRIIDTNVTTLLAVLALYVFGGGAIKGFALTLGIGVIAGTYSSI 192
|
|
| PRK12911 |
PRK12911 |
bifunctional preprotein translocase subunit SecD/SecF; Reviewed |
346-592 |
8.18e-41 |
|
bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Pssm-ID: 171815 [Multi-domain] Cd Length: 1403 Bit Score: 159.64 E-value: 8.18e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658758175 346 DGQGGDAMSAFSkANIGKPMATVYSEYsqnakgetVKKSEVINVAniaqhLSSRFSITNMKSQQAAADLALLLRAGSLTA 425
Cdd:PRK12911 824 EGVSGTKNGQFS-GGRGWRMAVVLDGY--------VVSDPVLNVP-----LKDHASVSGKFSHREVHRLATDLKSGAMSF 889
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658758175 426 PVTIVHEQTIGPSLGQENITNGLAALMLGMGITLAFMAMWYRRLGLIANVALLLNLTSLVGLMSLLPGVvLTLPGIAGLV 505
Cdd:PRK12911 890 VPEVLSEEVISPELGKSQRTQGIISVCLGLAVLIVLMSVYYRFGGVIASGAVLLNLLLIWAALQYLDAP-LTLSGLAGIV 968
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658758175 506 LTIGMAVDTNVIIFERIKEERRKGRSAYQAIQEGYKQAANTIFDANITTMITALILYGIGYGPVKGFAITLALGLITSVF 585
Cdd:PRK12911 969 LAMGMAVDANVLVFERIREEYLLSRSLSESVEAGYKKAFSAIFDSNLTTILASALLLMLDTGPIKGFALTLIIGIFSSMF 1048
|
....*..
gi 658758175 586 TGVYVSK 592
Cdd:PRK12911 1049 TALFMTK 1055
|
|
| secD |
PRK08343 |
preprotein translocase subunit SecD; Reviewed |
236-591 |
3.60e-21 |
|
preprotein translocase subunit SecD; Reviewed
Pssm-ID: 236245 [Multi-domain] Cd Length: 417 Bit Score: 96.10 E-value: 3.60e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658758175 236 DKEVMSQTLTTLRSRIEELGITEAVTQRQGKNRIRIELPGVqDPTEAKRIIGataSLGFYQLK----EIGGQTF----DM 307
Cdd:PRK08343 61 TQETMDLVVEILESRLNALGLKDIKVYPVGDQYIVVEVPGV-DADTAKEIIE---KQGVFEARiqtpGNNNETVltgdDI 136
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658758175 308 QSGGSIKLDPvpiftgehinnatiGRDDWGKPlVQLSLDGQggdamSAFSKANIGKPMATVYSEYsqnaKGETVKKSEVI 387
Cdd:PRK08343 137 ESVGSPSQDP--------------SGGAWGVP-FTLSEDGA-----EKFAEVAKGKGATDDPSGH----PLDMYLDGELI 192
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658758175 388 NVANIAQHLSSRFSITNMKSQQAAADLALLLRA-----------GSLTAPVTIVHEQTIGPSLGQENITNGLAALMLGMg 456
Cdd:PRK08343 193 YAAPLSPDLASGLASGPVVITVGSTGTTEEAKEeakelyihlrsGALPVKLDIEGSGSVSPSLGEQFKKGSLIAGLLAL- 271
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658758175 457 ITLAFM-AMWYRRLGL--------IANVALLLNLTSLVGLMsllpgvvLTLPGIAGLVLTIGMAVDTNVIIF-ERIKEER 526
Cdd:PRK08343 272 LAVALVvFLRYREPRIalpmvitsLSEVIIILGFAALIGWQ-------LDLASIAGIIAVIGTGVDDLIIITdEVLHEGK 344
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 658758175 527 RKGRSAYQAiqeGYKQAANTIFDANITTMITALILYGIGYGPVKGFAITLALGlitsVFTGVYVS 591
Cdd:PRK08343 345 VPSRKVFLS---RIKRAFFIIFAAAATTIAAMSPLAVMGLGDLKGFAITTILG----VLIGVLIT 402
|
|
| SecD_SecF |
pfam02355 |
Protein export membrane protein; This family consists of various prokaryotic SecD and SecF ... |
427-592 |
5.79e-16 |
|
Protein export membrane protein; This family consists of various prokaryotic SecD and SecF protein export membrane proteins. This SecD and SecF proteins are part of the multimeric protein export complex comprising SecA, D, E, F, G, Y, and YajC. SecD and SecF are required to maintain a proton motive force.
Pssm-ID: 280510 [Multi-domain] Cd Length: 189 Bit Score: 76.49 E-value: 5.79e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658758175 427 VTIVHEQTIGPSLGQENITNGLAALMLGMGITLAFMAMWYR-RLGLIANVALLLNLTSLVGLMSLLpGVVLTLPGIAGLV 505
Cdd:pfam02355 13 AEIISIETVGPTVGSELARKAVLALLFALLLILIYVGLRFEwRFALGAIIALAHDVIITVGVFSLF-GIEVDLATVAALL 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658758175 506 LTIGMAVDTNVIIFERIKEERRKGRSAyqAIQEGYKQAANTIFDANITTMITALI----LYGIGYGPVKGFAITLALGLI 581
Cdd:pfam02355 92 TIIGYSVNDTVVVFDRVRENLRKKTRA--TLNEIMNLSINQTLTRTINTSLTTLLvvvaLFVFGGGSLKDFSLALLVGVI 169
|
170
....*....|.
gi 658758175 582 TSVFTGVYVSK 592
Cdd:pfam02355 170 VGTYSSIFIAS 180
|
|
| SecF |
COG0341 |
Preprotein translocase subunit SecF [Intracellular trafficking, secretion, and vesicular ... |
426-590 |
5.36e-15 |
|
Preprotein translocase subunit SecF [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440110 [Multi-domain] Cd Length: 291 Bit Score: 75.86 E-value: 5.36e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658758175 426 PVTIVHEQTIGPSLGQENITNGLAALMLGMGITLAFMAMWYR-RLGLIANVALLLNLTSLVGLMSLLpGVVLTLPGIAGL 504
Cdd:COG0341 114 DVEIVRVEFVGPTVGKELTRKALLALLVALIGILIYIAFRFEwRFAVGAVVALLHDVLITLGIFSLF-GLEFDLTFIAAL 192
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658758175 505 vLTI-GMAV-DTnVIIFERIKEERRKGRSayqaiqEGYKQAAN---------TIFDAnITTMITALILYGIGYGPVKGFA 573
Cdd:COG0341 193 -LTIiGYSLnDT-VVVFDRIRENLRKYRK------MTLAEIINlsinqtlsrTINTS-LTTLLVVLALLFFGGETLRDFA 263
|
170
....*....|....*..
gi 658758175 574 ITLALGLITSVFTGVYV 590
Cdd:COG0341 264 LALLIGIIVGTYSSIFI 280
|
|
| RND_1 |
NF037998 |
protein translocase SecDF, variant type; Members of this family are identified by TCDB as ... |
457-605 |
5.60e-14 |
|
protein translocase SecDF, variant type; Members of this family are identified by TCDB as belonging to 2.A.6.4.4, a variant 12-TM type SecDF, as found in Spiroplasma, Mesoplasma, and Acholeplasma.
Pssm-ID: 468306 Cd Length: 1237 Bit Score: 75.58 E-value: 5.60e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658758175 457 ITLAFMAMWYRRLGLIANVaLLLNLTSLVGLMSLLPGVVLTLPGIAGLVLTIGMAVDTNVIIFERIKEER-RKGRSAYQA 535
Cdd:NF037998 457 AIMIYLLFAYRLLGLFAII-IALTSISLTLYSPTWFGLAIGPESITAIFIAIGLVLESCSLLFEAFKKHLyKNKRSIEES 535
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 658758175 536 IQEGYKQAANTIFDANITTMITALILYGIGYGPVKGFAITLALGLITSVFTGVYVSKVLSQ-TVYLKMAKK 605
Cdd:NF037998 536 FKIANKETIGIIVDALVVLLIPNLSLFWIGSNSIKSFATILLVGVIISLVLVIIVARLMIWlTIKLQWFKK 606
|
|
| MMPL |
COG1033 |
Predicted exporter protein, RND superfamily [General function prediction only]; |
451-586 |
2.68e-13 |
|
Predicted exporter protein, RND superfamily [General function prediction only];
Pssm-ID: 440656 [Multi-domain] Cd Length: 767 Bit Score: 72.97 E-value: 2.68e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658758175 451 LMLGMGITLAFMAMWYRRL--GLIANVALLLNLTSLVGLMSLLpGVVLTLPGIAGLVLTIGMAVDTNVIIFERIKEERRK 528
Cdd:COG1033 224 FPLALLLILLLLFLFFRSLrgVLLPLLVVLLAVIWTLGLMGLL-GIPLSPLTILVPPLLLAIGIDYGIHLLNRYREERRK 302
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 658758175 529 GRSAYQAIQEGYKQAANTIFDANITTMITALILYGIGYGPVKGFAITLALGLITSVFT 586
Cdd:COG1033 303 GLDKREALREALRKLGPPVLLTSLTTAIGFLSLLFSDIPPIRDFGIVAAIGVLLAFLT 360
|
|
| secF |
PRK13021 |
preprotein translocase subunit SecF; Reviewed |
423-601 |
1.24e-12 |
|
preprotein translocase subunit SecF; Reviewed
Pssm-ID: 237274 [Multi-domain] Cd Length: 297 Bit Score: 68.73 E-value: 1.24e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658758175 423 LTAPVTIVHEQTIGPSLGQENITNGLAALMLGMGITLAFMAMWYR-RLGLIANVALLLNLTSLVGLMSLLPgVVLTLPGI 501
Cdd:PRK13021 104 LGTEVQVLNSSIVGPQVGQELAEQGGLALLVAMLCILGYLSYRFEwRLASGALFALVHDVIFVLAFFALTQ-MEFNLTVL 182
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658758175 502 AGLVLTIGMAVDTNVIIFERIKEERRKgrSAYQAIQEGYKQAANTIFDANI----TTMITALILYGIGYGPVKGFAITLA 577
Cdd:PRK13021 183 AAVLAILGYSLNDSIIIADRIRELLIA--KPKLAIQEINNQAIVATFSRTMvtsgTTLMTVGALWIMGGGPLEGFSIAMF 260
|
170 180
....*....|....*....|....
gi 658758175 578 LGLITSVFTGVYVSKVLSQTVYLK 601
Cdd:PRK13021 261 IGILTGTFSSISVGTSLPELLGLS 284
|
|
| 3a0501s07 |
TIGR00966 |
protein-export membrane protein SecF; This bacterial protein is always found with the ... |
427-591 |
1.74e-12 |
|
protein-export membrane protein SecF; This bacterial protein is always found with the homologous protein-export membrane protein SecD. In numerous lineages, this protein occurs as a SecDF fusion protein. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273368 [Multi-domain] Cd Length: 246 Bit Score: 67.68 E-value: 1.74e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658758175 427 VTIVHEQTIGPSLGQENITNGLAALMLGMGITLAFMAMWY-RRLGLIANVALLLNLTSLVGLMSLLpGVVLTLPGIAGLV 505
Cdd:TIGR00966 80 AEIRSIDAVGPSVGGELARKAVLALLAALVLILIYITVRFeWRFALGAIVALVHDVIITVGVYSLF-GIEVNLTTVAALL 158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658758175 506 LTIGMAVDTNVIIFERIKEERRK--GRSAYQAIQEGYKQAANTIFDANITTMITALILYGIGYGPVKGFAITLALGLITS 583
Cdd:TIGR00966 159 TIIGYSINDTVVVFDRIRENLRKytRKTFTEVINLSINQTLSRTINTSLTTLLAVLALYVFGGGVIKDFSLALLVGVIVG 238
|
....*...
gi 658758175 584 VFTGVYVS 591
Cdd:TIGR00966 239 TYSSIFIA 246
|
|
| 2A067 |
TIGR00921 |
The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family; Characterized ... |
432-598 |
1.74e-11 |
|
The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family; Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. They fall into seven phylogenetic families, this family (2.A.6.7) consists of uncharacterised putative transporters, largely in the Archaea. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 273340 [Multi-domain] Cd Length: 719 Bit Score: 67.17 E-value: 1.74e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658758175 432 EQTIGPSLGqenITNGLAALMLGMGITLAFMAMWYRRLGLianVALLLNLTSLVGLMSLLpGVVLTLPGIAGLVLTIGMA 511
Cdd:TIGR00921 188 EREFGKDMG---TTMAISGILVVLVLLLDFKRWWRPLLPL---VIILFGVAWVLGIMGWL-GIPLYATTLLAVPMLIGVG 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658758175 512 VDTNVIIFERIKEERRKGRSAYQAIQEGYKQAANTIFDANITTMITALILYGIGYGPVKGFAITLALGLITSVFTGVYVS 591
Cdd:TIGR00921 261 IDYGIQTLNRYEEERDIGRAKGEAIVTAVRRTGRAVLIALLTTSAGFAALALSEFPMVSEFGLGLVAGLITAYLLTLLVL 340
|
....*..
gi 658758175 592 KVLSQTV 598
Cdd:TIGR00921 341 PALLQSI 347
|
|
| PRK13024 |
PRK13024 |
bifunctional preprotein translocase subunit SecD/SecF; Reviewed |
426-590 |
1.91e-11 |
|
bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Pssm-ID: 237276 [Multi-domain] Cd Length: 755 Bit Score: 67.18 E-value: 1.91e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658758175 426 PVTIVHEQTIGPSLGQENITNGLAAL---MLGMGITLAFMAMWYRRLGLIanVALLLNLTSLVGLMSLLpGVVLTLPGIA 502
Cdd:PRK13024 558 GGTIPSSETVGPTVGKELARNAIIAVliaLIGILLYILIRFEWTFSLGAI--LALLHDVLIVIGFFSLF-RLEVDLTFIA 634
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658758175 503 GLVLTIGMAVDTNVIIFERIKEERRKGRS------AYQAIQEGYKQAANTifdaNITTMITALILYGIGYGPVKGFAITL 576
Cdd:PRK13024 635 AILTIIGYSINDTVVVFDRIRENLRLYKKkdlreiVNKSINQTLSRTINT----SLTTLLVLLALLIFGGSSLRNFSLAL 710
|
170
....*....|....
gi 658758175 577 ALGLITSVFTGVYV 590
Cdd:PRK13024 711 LVGLIVGTYSSIFI 724
|
|
| MMPL |
COG1033 |
Predicted exporter protein, RND superfamily [General function prediction only]; |
439-586 |
2.48e-11 |
|
Predicted exporter protein, RND superfamily [General function prediction only];
Pssm-ID: 440656 [Multi-domain] Cd Length: 767 Bit Score: 66.81 E-value: 2.48e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658758175 439 LGQENITNGLAALMLGMGITLAFMAMWYR--RLGLIANVALLLNLTSLVGLMSLLpGVVLTLPGIAGLVLTIGMAVDTNV 516
Cdd:COG1033 599 INESVIESQIRSLLLALLLIFLLLLLAFRslRLGLISLIPNLLPILLTFGLMGLL-GIPLNIATAVVASIALGIGVDYTI 677
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658758175 517 IIFERIKEERRKGRSAYQAIQEGYKQAANTIFDANITTMITALILYGIGYGPVKGFAITLALGLITSVFT 586
Cdd:COG1033 678 HFLSRYREERRKGGDLEEAIRRALRTTGKAILFTSLTLAAGFGVLLFSSFPPLADFGLLLALGLLVALLA 747
|
|
| PRK08578 |
PRK08578 |
preprotein translocase subunit SecF; Reviewed |
337-581 |
7.69e-09 |
|
preprotein translocase subunit SecF; Reviewed
Pssm-ID: 236302 [Multi-domain] Cd Length: 292 Bit Score: 57.25 E-value: 7.69e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658758175 337 GKPlVQLSLDGQGGDAMSAFS--------KANIGKPMATVYSEYSQNAKGETVKKSEVINVANIAQHLSSRFSITNMksq 408
Cdd:PRK08578 39 GSP-VKLGIDFTGGTEITIQTndaspdelESALSGEPGVDVRKGSGNGYIITFGSGDDTDVDKLADAVKEFFNVDSI--- 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658758175 409 qaaadlalllragsltaPVTIVHEQTIGPSLGQENITNGLAAL---MLGMGITLAFMamwYRRLGLIANV--ALLLNLTS 483
Cdd:PRK08578 115 -----------------SELNYSEKQIGPTFGSQFQEQALKAVgfaFIGMAVVVFLI---FRTPVPSLAVilSAFSDIII 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658758175 484 LVGLMSLLpGVVLTLPGIAGLVLTIGMAVDTNVIIFERIKeeRRKGRsayqaIQEGYKQAANTIFDANITTMITALILYG 563
Cdd:PRK08578 175 ALALMNLF-GIELSLATVAALLMLIGYSVDSDILLTTRVL--KRRGT-----FDESIKRAMRTGITMTLTTIAAMAVLYI 246
|
250 260
....*....|....*....|..
gi 658758175 564 IGYGPV----KGFAITLALGLI 581
Cdd:PRK08578 247 VSTIPQaevlANIAAVLIFGLL 268
|
|
| MMPL |
pfam03176 |
MMPL family; Members of this family are putative integral membrane proteins from bacteria. ... |
450-585 |
2.18e-06 |
|
MMPL family; Members of this family are putative integral membrane proteins from bacteria. Several of the members are mycobacterial proteins. Many of the proteins contain two copies of this aligned region. The function of these proteins is not known, although it has been suggested that they may be involved in lipid transport.
Pssm-ID: 308676 [Multi-domain] Cd Length: 332 Bit Score: 49.98 E-value: 2.18e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658758175 450 ALMLGMGITLAF--MAMWYRrlGLIAnvALLLNLTSLVGLMSLLpGVVLTLPGIAGL-----------VLTIGMAVDTNV 516
Cdd:pfam03176 145 GLIEAVTLVVIFiiLLIVYR--SVVA--ALLPLLTVGLSLGAAQ-GLVAILAHILGIglstfalnllvVLLIAVGTDYAL 219
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 658758175 517 IIFERIKEERRKGRSAYQAIQEGYKQAANTIFDANITTMITALILYGIGYGPVKGFAITLALGLITSVF 585
Cdd:pfam03176 220 FLVSRYREELRAGEDREEAVIRAVRGTGKVVTAAGLTVAIAMLALSFARLPVFAQVGPTIAIGVLVDVL 288
|
|
| PRK13023 |
PRK13023 |
protein translocase subunit SecDF; |
433-594 |
2.22e-06 |
|
protein translocase subunit SecDF;
Pssm-ID: 171842 [Multi-domain] Cd Length: 758 Bit Score: 50.77 E-value: 2.22e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658758175 433 QTIGPSLGQENITNGLAALMLGM-GItlaFMAMWYR---RLGLIANVALLLNLTSLVGlMSLLPGVVLTLPGIAGLVLTI 508
Cdd:PRK13023 566 DVVGPTVSEQLSRAGVLAVILSLiGI---FIYVWFRfrwQLALGAVLSTLHDVVILSG-MFIVFRMEFNLWSVAAILTII 641
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658758175 509 GMAVDTNVIIFERIKEERRKGRSAY--QAIQEGYKQAANTIFDANITTMITALILYGIGYGPVKGFAITLALGLITSVFT 586
Cdd:PRK13023 642 GYSLNDTVVIYDRVRENLRRYKSAPlpAIIDASINQTLSRTLLTSFVTFLAHVPLYAFGGSEIRMFALALSVGIIVASYS 721
|
....*...
gi 658758175 587 GVYVSKVL 594
Cdd:PRK13023 722 SIFIAAPL 729
|
|
| YdfJ |
COG2409 |
Predicted lipid transporter YdfJ, MMPL/SSD domain, RND superfamily [General function ... |
448-588 |
1.42e-05 |
|
Predicted lipid transporter YdfJ, MMPL/SSD domain, RND superfamily [General function prediction only];
Pssm-ID: 441964 [Multi-domain] Cd Length: 697 Bit Score: 48.22 E-value: 1.42e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658758175 448 LAALMLGMGITLAFMAMWYRrlGLIAnvALLLNLTSLVGLMSLLPGV-----VLTLPGIA-GLVLTIGMAVDTNVIIF-- 519
Cdd:COG2409 172 GRAELITLPVALVVLLLVFR--SLVA--ALLPLLTAGLAVGVALGLLallaaFTDVSSFApNLLTMLGLGVGIDYALFlv 247
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 658758175 520 ERIKEERRKGRSAYQAIQEGYKQAANTIFDANITTMI--TALILYGIGYgpVKGFAITLALGLITSVFTGV 588
Cdd:COG2409 248 SRYREELRAGEDREEAVARAVATAGRAVLFSGLTVAIalLGLLLAGLPF--LRSMGPAAAIGVAVAVLAAL 316
|
|
| AcrB |
COG0841 |
Multidrug efflux pump subunit AcrB [Defense mechanisms]; |
444-585 |
1.91e-05 |
|
Multidrug efflux pump subunit AcrB [Defense mechanisms];
Pssm-ID: 440603 [Multi-domain] Cd Length: 1015 Bit Score: 47.79 E-value: 1.91e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658758175 444 ITNGLAALMLGMGITLAFMAMWyrRLGLIANVALLLnltSLVG---LMSLLpGV---VLTLpgiAGLVLTIGMAVDTNVI 517
Cdd:COG0841 334 VKTLLEAILLVVLVVFLFLRSW--RATLIPAVAIPV---SLIGtfaVMYLL-GFslnILTL---FALVLAIGIVVDDAIV 404
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 658758175 518 IFERIKEERRKGRSAYQAIQEGYKQAANTIFDANITTM---ITALILYGI-G--YGPvkgFAITLALGLITSVF 585
Cdd:COG0841 405 VVENIERHMEEGLSPLEAAIKGAREVAGAVIASTLTLVavfLPLAFMGGItGqlFRQ---FALTVAIALLISLF 475
|
|
| PRK12911 |
PRK12911 |
bifunctional preprotein translocase subunit SecD/SecF; Reviewed |
445-594 |
1.10e-04 |
|
bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Pssm-ID: 171815 [Multi-domain] Cd Length: 1403 Bit Score: 45.62 E-value: 1.10e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658758175 445 TNGLAALMLGMGITLAFMAMWYR-RLGLIANVALLLNLTS----LVGLMSLLPGVVLTLPGIAGLVLTIGMAVDTNVIIF 519
Cdd:PRK12911 1234 TQAVIALFGALGIILLYVSLRFEwRYAFSAICALIHDLLAtcavLVALHFFLQKIQIDLQAIGALMTVLGYSLNNTLIIF 1313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658758175 520 ERIKEERRKGRSA------YQAIQEGYKQAANTifdaNITTMITALILYGIGYGPVKGFAITLALGLITSVFTGVYVSKV 593
Cdd:PRK12911 1314 DRIREDRQEKLFTpmpiliNDALQKTLGRTVMT----TATTLSVLLILLFVGGGSIFNFAFIMTIGILLGTLSSLYIAPP 1389
|
.
gi 658758175 594 L 594
Cdd:PRK12911 1390 L 1390
|
|
| actII |
TIGR00833 |
Transport protein; The Resistance-Nodulation-Cell Division (RND) Superfamily- MmpL sub family ... |
481-594 |
2.59e-04 |
|
Transport protein; The Resistance-Nodulation-Cell Division (RND) Superfamily- MmpL sub family (TC 2.A.6.5)Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. This sub-family includes the S. coelicolor ActII3 protein, which may play a role in drug resistance, and the M. tuberculosis MmpL7 protein, which catalyzes export of an outer membrane lipid, phthiocerol dimycocerosate. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 129913 [Multi-domain] Cd Length: 910 Bit Score: 44.19 E-value: 2.59e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658758175 481 LTSLVGLMSLLPGVVLTLPGIAGL-----------------VLTIGMAVDTNVIIFERIKEERRKGRSAYQAIQEGYKQA 543
Cdd:TIGR00833 198 ITMLVPLVSVGFSVVVAQGIVSLLgipgligvnaqttvlltALVIGAGTDYAVFLTGRYHEERRKGESLEEAAAEALRGT 277
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 658758175 544 ANTIFDANITTMITALILYGIGYGPVKGFAITLALGLITSVFTGVYVSKVL 594
Cdd:TIGR00833 278 GKAILGSALTVAVAFLALSLARLPSFKTLGVSCAVGVLVALLNAVTLTPAL 328
|
|
| AcrB |
COG0841 |
Multidrug efflux pump subunit AcrB [Defense mechanisms]; |
441-590 |
3.78e-04 |
|
Multidrug efflux pump subunit AcrB [Defense mechanisms];
Pssm-ID: 440603 [Multi-domain] Cd Length: 1015 Bit Score: 43.55 E-value: 3.78e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658758175 441 QENITNGLAALMLGMGITLAFMAMWYRRLG--LIANVALLLnltSLVG--LMSLLPGVVLTLPGIAGLVLTIGMAVDTNV 516
Cdd:COG0841 847 QESFSSLGLAFLLALLLVYLVLAAQFESFIqpLIILLTVPL---ALIGalLGLLLTGTPLNIYSQIGLIMLIGIVVKNAI 923
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658758175 517 IIFERIKEERRKGRSAYQAIQEgykqAANT----IFdanITTMITAL----ILYGIGYGPV--KGFAITLALGLITSVFT 586
Cdd:COG0841 924 LLVDFANQLREEGMSLREAILE----AARLrlrpIL---MTSLATILgllpLALGTGAGAEfrQPLGIAVIGGLLFSTLL 996
|
....
gi 658758175 587 GVYV 590
Cdd:COG0841 997 TLFV 1000
|
|
| PRK09579 |
PRK09579 |
multidrug efflux RND transporter permease subunit; |
427-583 |
3.92e-04 |
|
multidrug efflux RND transporter permease subunit;
Pssm-ID: 169983 [Multi-domain] Cd Length: 1017 Bit Score: 43.67 E-value: 3.92e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658758175 427 VTIVHEQT--IGPSLGQENITNGLAALMLgmgITLAFMAMWYRRLGLIANVALLLNLTSLVGLMSLLpGVVLTLPGIAGL 504
Cdd:PRK09579 316 VSIAYDATlfIQASIDEVVKTLGEAVLIV---IVVVFLFLGALRSVLIPVVTIPLSMIGVLFFMQMM-GYSINLLTLLAM 391
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658758175 505 VLTIGMAVDTNVIIFERIKEERRKGRSAYQAIQEGYKQAANTIFDANIT-TMITALI--LYGIGYGPVKGFAITLALGLI 581
Cdd:PRK09579 392 VLAIGLVVDDAIVVVENIHRHIEEGKSPFDAALEGAREIAMPVVSMTITlAAVYAPIgfLTGLTGALFKEFALTLAGAVI 471
|
..
gi 658758175 582 TS 583
Cdd:PRK09579 472 IS 473
|
|
| ACR_tran |
pfam00873 |
AcrB/AcrD/AcrF family; Members of this family are integral membrane proteins. Some are ... |
441-594 |
7.37e-04 |
|
AcrB/AcrD/AcrF family; Members of this family are integral membrane proteins. Some are involved in drug resistance. AcrB cooperates with a membrane fusion protein, AcrA, and an outer membrane channel TolC. The structure shows the AcrB forms a homotrimer.
Pssm-ID: 395701 [Multi-domain] Cd Length: 1021 Bit Score: 42.67 E-value: 7.37e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658758175 441 QENITNGLAALMLGMGITLAFMAMWYRRLGLIANVALLLNL-TSLVG--LMSLLPGVVLTLPGIAGLVLTIGMAVDTNVI 517
Cdd:pfam00873 856 QEQLAGNSLPILIALALLVVFLVLAALYESWSDPLSIMLTVpLALVGalLALWLRGLPNSVYAQVGLILLIGLAVKNAIL 935
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658758175 518 IFERIKEERR-KGRSAYQAIQEGYKQAANTIFdanITTMITAL------ILYGIGYGPVKGFAITLALGLITSVFTGVYV 590
Cdd:pfam00873 936 MVEFANELREqEGKSLEEAILEACRLRLRPIL---MTALAAILgvlplaLSTGAGSELQQPLGIVVFGGLVTSTVLTLLV 1012
|
....
gi 658758175 591 SKVL 594
Cdd:pfam00873 1013 VPVF 1016
|
|
| PRK14726 |
PRK14726 |
protein translocase subunit SecDF; |
435-591 |
9.15e-04 |
|
protein translocase subunit SecDF;
Pssm-ID: 237805 [Multi-domain] Cd Length: 855 Bit Score: 42.40 E-value: 9.15e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658758175 435 IGPSLGQE---NITNGLAALMLGMGITLAFMAMWYRRLGLIanVALLLNLTSLVGLMSLLpGVVLTLPGIAGLVLTIGMA 511
Cdd:PRK14726 662 VGPAVSGEltmAATLGVLAALAAILIYIWIRFEWQFAVGAI--IATLHDVILTLGLFVLT-GIEFNLTSIAAILTIVGYS 738
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658758175 512 VDTNVIIFERIKEERRKGRSA--YQAIQEGYKQA-ANTIFDAnITTMITALILYGIGYGPVKGFAITLALGLITSVFTGV 588
Cdd:PRK14726 739 LNDTVVVYDRVRENLRRYKKMplPILIDASINQTlSRTVLTS-ATTLLALLALYLFGGEVIRSFTFAMLFGVAVGTFSSI 817
|
...
gi 658758175 589 YVS 591
Cdd:PRK14726 818 YIA 820
|
|
| HpnN |
TIGR03480 |
hopanoid biosynthesis associated RND transporter like protein HpnN; The genomes containing ... |
422-598 |
4.81e-03 |
|
hopanoid biosynthesis associated RND transporter like protein HpnN; The genomes containing members of this family share the machinery for the biosynthesis of hopanoid lipids. Furthermore, the genes of this family are usually located proximal to other components of this biological process. The proteins appear to be related to the RND family of export proteins, particularly the hydrophobe/amphiphile efflux-3 (HAE3) family represented by TIGR00921.
Pssm-ID: 274598 [Multi-domain] Cd Length: 862 Bit Score: 39.98 E-value: 4.81e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658758175 422 SLTAPVTIVHEQTigpSLGQENITNGLAALMLGMGITLAFMamwYRRLGLIANVALLLN----LTSLVGLMSLLPgvvLT 497
Cdd:TIGR03480 252 RLTGEVALSDEEL---ATVSEGATVAGLLSFVLVLVLLWLA---LRSPRLVFAVLVTLIvgliLTAAFATLAVGH---LN 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658758175 498 LPGIAGLVLTIGMAVDTNVIIFERIKEERRKGRSAYQAIQEGYKQAANTIFDANITTMITALILYGIGYgpvKGFAitlA 577
Cdd:TIGR03480 323 LISVAFAVLFIGLGVDFAIQFSLRYREERFRGGNHREALSVAARRMGAALLLAALATAAGFFAFLPTDY---KGVS---E 396
|
170 180
....*....|....*....|.
gi 658758175 578 LGLITSvfTGVYVSKVLSQTV 598
Cdd:TIGR03480 397 LGIIAG--TGMFIALFVTLTV 415
|
|
| YdfJ |
COG2409 |
Predicted lipid transporter YdfJ, MMPL/SSD domain, RND superfamily [General function ... |
455-581 |
4.93e-03 |
|
Predicted lipid transporter YdfJ, MMPL/SSD domain, RND superfamily [General function prediction only];
Pssm-ID: 441964 [Multi-domain] Cd Length: 697 Bit Score: 39.75 E-value: 4.93e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658758175 455 MGITLAFMAMWYRRLgLIANVALLLNLTSLV---GLMSLL------------PGVVLTLPGIAGLVLtIGMAVDTNVIIF 519
Cdd:COG2409 527 LGLIFLLLLLLFRSV-VAPLKAVLTNLLSLGaalGVLVLVfqhgwlllgftpGPLDSFVPLLLFVIL-FGLGMDYEVFLV 604
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 658758175 520 ERIKEERRKGRSAYQAIQEGYKQAANTIFDANITTMITALILYGIGYGPVKGFAITLALGLI 581
Cdd:COG2409 605 SRIREEYDRGGGTREAVIRGLARTGRVITSAALIMAAVFAAFATSPLVFLKQIGFGLAVGVL 666
|
|
| SecD-TM1 |
pfam13721 |
SecD export protein N-terminal TM region; This domain appears to be the fist transmembrane ... |
19-81 |
6.13e-03 |
|
SecD export protein N-terminal TM region; This domain appears to be the fist transmembrane region of the SecD export protein. SecD is directly involved in protein secretion and important for the release of proteins that have been translocated across the cytoplasmic membrane.
Pssm-ID: 463968 [Multi-domain] Cd Length: 103 Bit Score: 36.72 E-value: 6.13e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 658758175 19 YIAMLIVLVLLAISALPNLYRNKSWLHVSNAphseTQAVPSTNALVTflnnqglKVEQGLNNQ 81
Cdd:pfam13721 9 YLLILVVLLIGLLYALPNLYGEDPAVQISAA----RGGAKVDEATLD-------RVEQALKAA 60
|
|
| ACR_tran |
pfam00873 |
AcrB/AcrD/AcrF family; Members of this family are integral membrane proteins. Some are ... |
453-598 |
7.65e-03 |
|
AcrB/AcrD/AcrF family; Members of this family are integral membrane proteins. Some are involved in drug resistance. AcrB cooperates with a membrane fusion protein, AcrA, and an outer membrane channel TolC. The structure shows the AcrB forms a homotrimer.
Pssm-ID: 395701 [Multi-domain] Cd Length: 1021 Bit Score: 39.59 E-value: 7.65e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658758175 453 LGMGITLAFMAM------WyrRLGLIANVALLLNLTSLVGLMSLLpGVVLTLPGIAGLVLTIGMAVDTNVIIFERIKEE- 525
Cdd:pfam00873 337 LLEAIVLVILVMflflqnW--RATLIPAIAIPLSLLGTFAVMKAF-GFSINTLTLGGLVLAIGLVVDDAIVVVENIERVl 413
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 658758175 526 RRKGRSAYQAIQEGYKQAANTIFdaNITTMITALILYGIGYGPVKG-----FAITLALGLITSVFTGVYVSKVLSQTV 598
Cdd:pfam00873 414 EENGLKPLEAAYKSMGEIGGALV--AIALVLSAVFLPILFLGGLTGrifrqFAITIVLAILLSVLVALTLTPALCATL 489
|
|
| |
