|
Name |
Accession |
Description |
Interval |
E-value |
| ND2 |
MTH00160 |
NADH dehydrogenase subunit 2; Provisional |
1-339 |
3.75e-95 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214442 [Multi-domain] Cd Length: 335 Bit Score: 285.95 E-value: 3.75e-95
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656998369 1 MFNSSKILFMMIMILGTMITITSNSWLSAWMGLEINLLSFIPLMSDSDNNNSltMESSLKYFLTQALASIVLLFAIILMM 80
Cdd:MTH00160 2 MMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMS--SESSLKYFLIQALASIILLFSIILNM 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656998369 81 LKNIiieLNYSYISMMIFSSLLMKSGAAPFHFWFPNMTEGLTWTNSLILMTWQKIAPLMLISHINLNFLLKISVILSVII 160
Cdd:MTH00160 80 LNLM---LFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLINNNFIIIIIILSAII 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656998369 161 GALGGINQTSLRKLMAFSSINHLGWMLMTLNISETHWMIYFLFYSFLSTSIIFMFNTFKLFHFNQMFSLFYNSKIMKFLL 240
Cdd:MTH00160 157 GAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLL 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656998369 241 FFNFLSLGGLPPFLGFLPKWMVIQQLTMNNNFFLIFIMILSSLITLFFYLRICYSAFMLNYYENNWMMNLNFNFYLYLCY 320
Cdd:MTH00160 237 FLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKKKKNKFSLILN 316
|
330
....*....|....*....
gi 656998369 321 GLSFFSTFGLFFVSILYFI 339
Cdd:MTH00160 317 FLSFISLFGLILSSLLFLL 335
|
|
| Proton_antipo_M |
pfam00361 |
Proton-conducting membrane transporter; This is a family of membrane transporters that ... |
23-282 |
3.73e-29 |
|
Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.
Pssm-ID: 425636 [Multi-domain] Cd Length: 291 Bit Score: 113.56 E-value: 3.73e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656998369 23 SNSWLSAWMGLEINLLSFIPLMSDSdNNNSLTMESSLKYFLTQALASIVLLFAIILM--------------MLKNIIIEL 88
Cdd:pfam00361 1 ANDLLLMYLGWEAVLLPSYLLIGYW-GKSPRSSEAGMKYFLLTLLGSSILLFGISLMynytgtlsfdelskALTGGLNSS 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656998369 89 NYSYISMMIFSSLLMKSGAAPFHFWFPNMTEGLTWTNSLIL-MTWQKIAPLMLI--------SHINLNFLLKISVILSVI 159
Cdd:pfam00361 80 GLLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLaATLVKAGGYGLIrrsllylpSSPFIQQILLILAIISML 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656998369 160 IGALGGINQTSLRKLMAFSSINHLGWMLMTL----NISETHWMIYFLFYSFLSTSIIFMFNTF-----KLFHFNQMFSLF 230
Cdd:pfam00361 160 LGSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLCAGSViyrrvHTRNIRDYGGLA 239
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 656998369 231 YNSKIMKFLLFFNFLSLGGLPPFLGFLPKWMVIQQLTMNNNFFLIFIMILSS 282
Cdd:pfam00361 240 KTMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
|
|
| NuoN |
COG1007 |
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ... |
8-298 |
2.91e-22 |
|
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440631 [Multi-domain] Cd Length: 473 Bit Score: 97.11 E-value: 2.91e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656998369 8 LFMMIMILGTMITITSNSWLSAWMGLEINLLSFIPLMSdSDNNNSLTMESSLKYFLTQALASIVLLFAI----------- 76
Cdd:COG1007 106 ALLLFATLGMMLMASANDLLTLFLGLELLSLSLYVLVA-FRRDDRRSSEAALKYFLLGALSSGFLLYGIsllygatgsln 184
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656998369 77 ---ILMMLKNIIIELNYSYISM-MIFSSLLMKSGAAPFHFWFPNMTEGLTWTNSLILMTWQKIA----------PLMLIS 142
Cdd:COG1007 185 lagIAAALAAGGANSPLLLLGLvLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAafaallrllvEAFPGL 264
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656998369 143 HINLNFLLKISVILSVIIGALGGINQTSLRKLMAFSSINHLGWMLMTL----NISETHWMIYFLFYSFLSTSIIFMF--- 215
Cdd:COG1007 265 AADWQLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLaagtPLGVSAALFYLLAYLFMNLGAFAVIlll 344
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656998369 216 --NTFKLFHFNQMFSLFYNSKIMKFLLFFNFLSLGGLPPFLGFLPKWMVIQQLTMNNNFFLIFIMILSSLITLFFYLRIC 293
Cdd:COG1007 345 srKGGEAEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVV 424
|
....*
gi 656998369 294 YSAFM 298
Cdd:COG1007 425 KAMYF 429
|
|
| NDH_I_N |
TIGR01770 |
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ... |
7-298 |
1.23e-20 |
|
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]
Pssm-ID: 273795 [Multi-domain] Cd Length: 468 Bit Score: 92.32 E-value: 1.23e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656998369 7 ILFMMIMILGTMITITSNSWLSAWMGLEINLLSFIPLMSdSDNNNSLTMESSLKYFLTQALASIVLLFAIILM------- 79
Cdd:TIGR01770 105 YILLLFALLGIFLLVSSNDLLSIYLGLELQSLCFYVLAG-LKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIygftgsl 183
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656998369 80 -----MLKNIIIELNYSYISM---MIFSSLLMKSGAAPFHFWFPNMTEGLTWTNSLILMTWQKIAPLMLISHINLNFL-- 149
Cdd:TIGR01770 184 nfedlLLFLSNGMLNISLLLLgivLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLFLYILfg 263
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656998369 150 --------LKISVILSVIIGALGGINQTSLRKLMAFSSINHLGWMLMTLNISETHWMIYFLFY----------SFLSTSI 211
Cdd:TIGR01770 264 fseawqifLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAVLFYifiyalmslgAFGVLSL 343
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656998369 212 IFMFNTFKLFHFNQMFSLFYNSKIMKFLLFFNFLSLGGLPPFLGFLPKWMVIQQLTMNNNFFLIFIMILSSLITLFFYLR 291
Cdd:TIGR01770 344 LRSYKDEWIEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLR 423
|
....*..
gi 656998369 292 ICYSAFM 298
Cdd:TIGR01770 424 VVKVMYF 430
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| ND2 |
MTH00160 |
NADH dehydrogenase subunit 2; Provisional |
1-339 |
3.75e-95 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214442 [Multi-domain] Cd Length: 335 Bit Score: 285.95 E-value: 3.75e-95
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656998369 1 MFNSSKILFMMIMILGTMITITSNSWLSAWMGLEINLLSFIPLMSDSDNNNSltMESSLKYFLTQALASIVLLFAIILMM 80
Cdd:MTH00160 2 MMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMS--SESSLKYFLIQALASIILLFSIILNM 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656998369 81 LKNIiieLNYSYISMMIFSSLLMKSGAAPFHFWFPNMTEGLTWTNSLILMTWQKIAPLMLISHINLNFLLKISVILSVII 160
Cdd:MTH00160 80 LNLM---LFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLINNNFIIIIIILSAII 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656998369 161 GALGGINQTSLRKLMAFSSINHLGWMLMTLNISETHWMIYFLFYSFLSTSIIFMFNTFKLFHFNQMFSLFYNSKIMKFLL 240
Cdd:MTH00160 157 GAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLL 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656998369 241 FFNFLSLGGLPPFLGFLPKWMVIQQLTMNNNFFLIFIMILSSLITLFFYLRICYSAFMLNYYENNWMMNLNFNFYLYLCY 320
Cdd:MTH00160 237 FLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKKKKNKFSLILN 316
|
330
....*....|....*....
gi 656998369 321 GLSFFSTFGLFFVSILYFI 339
Cdd:MTH00160 317 FLSFISLFGLILSSLLFLL 335
|
|
| ND2 |
MTH00112 |
NADH dehydrogenase subunit 2; Provisional |
5-298 |
1.37e-69 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214423 [Multi-domain] Cd Length: 346 Bit Score: 220.85 E-value: 1.37e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656998369 5 SKILFMMIMILGTMITITSNSWLSAWMGLEINLLSFIPLMSDSdnNNSLTMESSLKYFLTQALASIVLLFAIILMMLKN- 83
Cdd:MTH00112 5 AKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKP--HHPRATEAATKYFLTQAAASALILFSSTTNAWNTg 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656998369 84 --IIIELNYSYISMMIFSSLLMKSGAAPFHFWFPNMTEGLTWTNSLILMTWQKIAP--LMLISHINLNF-LLKISVILSV 158
Cdd:MTH00112 83 qwDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPltLLLMTSNSLNPtLLLTLAILST 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656998369 159 IIGALGGINQTSLRKLMAFSSINHLGWMLMTLNISETHWMIYFLFYSFLSTSIIFMFNTFKLFHFNQMFSLFYNSKIMKF 238
Cdd:MTH00112 163 LIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNT 242
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 656998369 239 LLFFNFLSLGGLPPFLGFLPKWMVIQQLTMNNNFFLIFIMILSSLITLFFYLRICYSAFM 298
Cdd:MTH00112 243 TLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTI 302
|
|
| ND2 |
MTH00105 |
NADH dehydrogenase subunit 2; Provisional |
7-295 |
2.57e-68 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177167 [Multi-domain] Cd Length: 347 Bit Score: 217.41 E-value: 2.57e-68
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656998369 7 ILFMMIMILGTMITITSNSWLSAWMGLEINLLSFIPLMSDsdNNNSLTMESSLKYFLTQALASIVLLFAIILMMLKN--- 83
Cdd:MTH00105 7 IIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMK--KHNPRSTEAATKYFLTQATASMLLMMAIIINLMYSgqw 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656998369 84 IIIELNYSYISMMIFSSLLMKSGAAPFHFWFPNMTEGLTWTNSLILMTWQKIAPLMLISHI----NLNFLLKISvILSVI 159
Cdd:MTH00105 85 TITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQIspsiNPNLLLTLA-ILSIL 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656998369 160 IGALGGINQTSLRKLMAFSSINHLGWMLMTLNISETHWMIYFLFYSFLSTSIIFMFNTFKLFHFNQMFSLFYNSKIMKFL 239
Cdd:MTH00105 164 IGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLMTSL 243
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 656998369 240 LFFNFLSLGGLPPFLGFLPKWMVIQQLTMNNNFFLIFIMILSSLITLFFYLRICYS 295
Cdd:MTH00105 244 ILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYS 299
|
|
| ND2 |
MTH00135 |
NADH dehydrogenase subunit 2; Provisional |
7-295 |
4.87e-63 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177193 [Multi-domain] Cd Length: 347 Bit Score: 203.88 E-value: 4.87e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656998369 7 ILFMMIMIL--GTMITITSNSWLSAWMGLEINLLSFIPLMSDsdNNNSLTMESSLKYFLTQALASIVLLFAIIL---MML 81
Cdd:MTH00135 5 VLTILLFSLglGTTLTFASSHWLLAWMGLEINTLAIIPLMAQ--HHHPRAVEATTKYFLTQATAAAMILFASTTnawLTG 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656998369 82 KNIIIELNYSYISMMIFSSLLMKSGAAPFHFWFPNMTEGLTWTNSLILMTWQKIAPLMLISHINLN--FLLKISVILSVI 159
Cdd:MTH00135 83 QWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPTnpTLLITLGLTSTL 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656998369 160 IGALGGINQTSLRKLMAFSSINHLGWMLMTLNISETHWMIYFLFYSFLSTSIIFMFNTFKLFHFNQMFSLFYNSKIMKFL 239
Cdd:MTH00135 163 VGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPALTAL 242
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 656998369 240 LFFNFLSLGGLPPFLGFLPKWMVIQQLTMNNNFFLIFIMILSSLITLFFYLRICYS 295
Cdd:MTH00135 243 TPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYA 298
|
|
| ND2 |
MTH00070 |
NADH dehydrogenase subunit 2; Provisional |
9-295 |
5.17e-61 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177142 [Multi-domain] Cd Length: 346 Bit Score: 198.61 E-value: 5.17e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656998369 9 FMMIMILGTMITITSNSWLSAWMGLEINLLSFIPLMSDSDNNNSLtmESSLKYFLTQALASIVLLFAIIL---MMLKNII 85
Cdd:MTH00070 9 LLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRAT--EAATKYFLTQASASALILFSSTInawFTGEWTI 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656998369 86 IELNYSYISMMIFSSLLMKSGAAPFHFWFPNMTEGLTWTNSLILMTWQKIAPLMLI----SHINLNfLLKISVILSVIIG 161
Cdd:MTH00070 87 MNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLiqisHLLNSN-LLIIMGLLSTLIG 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656998369 162 ALGGINQTSLRKLMAFSSINHLGWMLMTLNISETHWMIYFLFYSFLSTSIIFMFNTFKLFHFNQMFSLFYNSKIMKFLLF 241
Cdd:MTH00070 166 GWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTLTSMMM 245
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 656998369 242 FNFLSLGGLPPFLGFLPKWMVIQQLTMNNNFFLIFIMILSSLITLFFYLRICYS 295
Cdd:MTH00070 246 LTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYA 299
|
|
| ND2 |
MTH00041 |
NADH dehydrogenase subunit 2; Validated |
1-340 |
2.44e-56 |
|
NADH dehydrogenase subunit 2; Validated
Pssm-ID: 177116 [Multi-domain] Cd Length: 349 Bit Score: 186.68 E-value: 2.44e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656998369 1 MFNSSKILFMMIMILGTMITITSNSWLSAWMGLEINLLSFIPLMSDsdNNNSLTMESSLKYFLTQALASIVLLFAIIL-- 78
Cdd:MTH00041 1 MNRNVLIFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSS--NFSPRSVEATIKYFLVQAFSAAILLNGALIqa 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656998369 79 MMLKNIIIELNYSYISMMIFS-SLLMKSGAAPFHFWFPNMTEGLTWTNSLILMTWQKIAPLMLISHIN---LNFLLKISV 154
Cdd:MTH00041 79 WLSGSWSINGPLNTLSSIIITlALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISnllNSNILILCG 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656998369 155 ILSVIIGALGGINQTSLRKLMAFSSINHLGWMLMTLNISETHWMIYFLFYSFLSTSIIFMFNTFKLFHFNQMFSLFYNSK 234
Cdd:MTH00041 159 ILSVLVGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNP 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656998369 235 IMKFLLFFNFLSLGGLPPFLGFLPKWMVIQQLTMNNNFFLIFIMILSSLITLFFYLRICYSAFMLNYYEN-----NWMMN 309
Cdd:MTH00041 239 ISAFLFILSILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHsislfSWRNS 318
|
330 340 350
....*....|....*....|....*....|.
gi 656998369 310 LNFNFYLYLCYGLSFFSTFGLFFVSILYFIF 340
Cdd:MTH00041 319 GNITVYGVILSILSSISILGLLLIPLFLSFL 349
|
|
| ND2 |
MTH00200 |
NADH dehydrogenase subunit 2; Provisional |
8-340 |
2.72e-49 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177246 [Multi-domain] Cd Length: 347 Bit Score: 168.22 E-value: 2.72e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656998369 8 LFMMIMILGTMITITSNSWLSAWMGLEINLLSFIPLMSDsdNNNSLTMESSLKYFLTQALASIVLLFAIILMML---KNI 84
Cdd:MTH00200 8 LFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIK--QHHPRKVEATTKYFIIQATASALLLFGGLLNAWtsgQWG 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656998369 85 IIELNYSYISMMIFSSLLMKSGAAPFHFWFPNMTEGLTWTNSLILMTWQKIAPLMLISHI----NLNFLLKISViLSVII 160
Cdd:MTH00200 86 ISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLapalNSNILLLLGL-LSVLV 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656998369 161 GALGGINQTSLRKLMAFSSINHLGWMLMTLNISETHWMIYFLFYSFLSTSIIFMFNTFKLFHFNQMFSLFYNSKIMKFLL 240
Cdd:MTH00200 165 GGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPILSMLL 244
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656998369 241 FFNFLSLGGLPPFLGFLPKWMVIQQLTMNNNFFLIFIMILSSLITLFFYLRICYSAFMLNYYENNWMMNL--NFNFYLYL 318
Cdd:MTH00200 245 GLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSwrTKSNSNLL 324
|
330 340
....*....|....*....|..
gi 656998369 319 CYGLSFFSTFGLFFVSILYFIF 340
Cdd:MTH00200 325 VGLLLLLSILGLPLTPQLLFLF 346
|
|
| ND2 |
MTH00011 |
NADH dehydrogenase subunit 2; Validated |
8-299 |
4.70e-48 |
|
NADH dehydrogenase subunit 2; Validated
Pssm-ID: 164587 [Multi-domain] Cd Length: 330 Bit Score: 164.57 E-value: 4.70e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656998369 8 LFMMIMILGTMITITSNSWLSAWMGLEINLLSFIPLMSDSDNNNSltMESSLKYFLTQALASIVLLFAIILMMLKNIIIE 87
Cdd:MTH00011 10 LFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQE--SEAAVKYFLAQALGSGLLLLGMTMMWSFPSLLK 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656998369 88 lnySYISMMIFSSLLMKSGAAPFHFWFPNMTEGLTWTNSLILMTWQKIAPLMLI----SHINLNFLLKISViLSVIIGAL 163
Cdd:MTH00011 88 ---NITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILffftSHNILPMMTSMAA-MSALAGGL 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656998369 164 GGINQTSLRKLMAFSSINHLGWMLMTLNISETHWMIYFLFYSFLSTSIIFMFNTFKLFHFNQMFSLFYNSKIMKFLLFFN 243
Cdd:MTH00011 164 GGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFIM 243
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 656998369 244 FLSLGGLPPFLGFLPKWMVIQQLTMNNNFFLIFIMILSSLITLFFYLRICYSAFML 299
Cdd:MTH00011 244 LLSLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIFNFMYL 299
|
|
| ND2 |
MTH00144 |
NADH dehydrogenase subunit 2; Provisional |
1-338 |
3.62e-47 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214432 [Multi-domain] Cd Length: 328 Bit Score: 161.98 E-value: 3.62e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656998369 1 MFNSSKILFMMIMILGTMITITSNSWLSAWMGLEINLLSFIPLMSDsdNNNSLTMESSLKYFLTQALASIVLLFAIILMM 80
Cdd:MTH00144 1 MSSPSNLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVY--KKKSSESESVVKYFIIQSLGSSLLIFGSLIMY 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656998369 81 lkniiIELNYSYISMMIFSSLLMKSGAAPFHFWFPNMTEGLTWTNSLILMTWQKIAPLMLISHINLNFLLKISV----IL 156
Cdd:MTH00144 79 -----NLSFSWFSMSLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLAYLLcvisVL 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656998369 157 SVIIGALGGINQTSLRKLMAFSSINHLGWMLMTLNISETHWMIYFLFYSFLSTSIIFMFNTFKLFHFNQMFSLFYNSKiM 236
Cdd:MTH00144 154 SALVGSIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKDLGSLKPSYK-T 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656998369 237 KFLLFFNFLSLGGLPPFLGFLPKWMVIQQLTMNNNFFLIFIMILSSLITLFFYLRICYSAFMlnyyenNWMMNLNFNFYL 316
Cdd:MTH00144 233 GLSIISLLLSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFL------SSSKSKKSNSSK 306
|
330 340
....*....|....*....|..
gi 656998369 317 YLCYGLSFFSTFGLFFVSILYF 338
Cdd:MTH00144 307 VLNSSIISLNLLGGLLFLLLYL 328
|
|
| ND2 |
MTH00197 |
NADH dehydrogenase subunit 2; Provisional |
8-331 |
3.21e-43 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177244 [Multi-domain] Cd Length: 323 Bit Score: 151.75 E-value: 3.21e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656998369 8 LFMMIMILGTMITITSNSWLSAWMGLEINLLSFIPLMSDsdNNNSLTMESSLKYFLTQALASIVLLFAIILMMLKNIIIE 87
Cdd:MTH00197 2 LFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQ--NKSITENEGAMKYFLFQEFGSALLLMGGSLSFSNLYLSL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656998369 88 LNysyiSMMIFSSLLMKSGAAPFHFWFPNMTEGLTWTNSLILMTWQKIAPLMLISHINLNF-LLKISVILSVIIGALGGI 166
Cdd:MTH00197 80 LS----VVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNSSSFmGLLICSVLSSLIGGIGGM 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656998369 167 NQTSLRKLMAFSSINHLGWMLMTLNISETHWMIYFLFYSFLSTSIIFMFNTFKLFHFNQMFSLFYNSKIMKFLLFFNFLS 246
Cdd:MTH00197 156 NQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLSFLS 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656998369 247 LGGLPPFLGFLPKWMVIQQLTMNNNFFLIFIMILSSLITLFFYLRICYSAFMLNYYENNWMMNLNFNFYLYLCYGLSFFS 326
Cdd:MTH00197 236 LGGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKSLILSNWMINFLMKINLLYSGLFILLMMMLP 315
|
....*
gi 656998369 327 TFGLF 331
Cdd:MTH00197 316 LLMIF 320
|
|
| Proton_antipo_M |
pfam00361 |
Proton-conducting membrane transporter; This is a family of membrane transporters that ... |
23-282 |
3.73e-29 |
|
Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.
Pssm-ID: 425636 [Multi-domain] Cd Length: 291 Bit Score: 113.56 E-value: 3.73e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656998369 23 SNSWLSAWMGLEINLLSFIPLMSDSdNNNSLTMESSLKYFLTQALASIVLLFAIILM--------------MLKNIIIEL 88
Cdd:pfam00361 1 ANDLLLMYLGWEAVLLPSYLLIGYW-GKSPRSSEAGMKYFLLTLLGSSILLFGISLMynytgtlsfdelskALTGGLNSS 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656998369 89 NYSYISMMIFSSLLMKSGAAPFHFWFPNMTEGLTWTNSLIL-MTWQKIAPLMLI--------SHINLNFLLKISVILSVI 159
Cdd:pfam00361 80 GLLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLaATLVKAGGYGLIrrsllylpSSPFIQQILLILAIISML 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656998369 160 IGALGGINQTSLRKLMAFSSINHLGWMLMTL----NISETHWMIYFLFYSFLSTSIIFMFNTF-----KLFHFNQMFSLF 230
Cdd:pfam00361 160 LGSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLCAGSViyrrvHTRNIRDYGGLA 239
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 656998369 231 YNSKIMKFLLFFNFLSLGGLPPFLGFLPKWMVIQQLTMNNNFFLIFIMILSS 282
Cdd:pfam00361 240 KTMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
|
|
| ND2 |
MTH00196 |
NADH dehydrogenase subunit 2; Provisional |
14-292 |
1.15e-26 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214453 [Multi-domain] Cd Length: 365 Bit Score: 108.19 E-value: 1.15e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656998369 14 ILGTMITITSNSWLSAWMGLEINLLSFIPLMSdSDNNNSLTMESSLKYFLTQALASIVLLFAIILMMLKNIIIELNY--- 90
Cdd:MTH00196 3 ALGILCLISSSNWLSVYLAIELQTLSLFILIA-QNRGSGYSAEAGLKYFVLGALSSGLFLFGCALLCGTTGGLHLSYinl 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656998369 91 -------------SYISMMIFSSLLMKSGAAPFHFWFPNMTEGLTWTNSLILMTWQKIAPLMLISHINLNF-LLKISVIL 156
Cdd:MTH00196 82 vlnsgqsfssvsvPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIGLNVnILLIGGLF 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656998369 157 SVIIGALGGINQTSLRKLMAFSSINHLGWMLMTLNISETH-------WMIYFLFYSFLSTSIIFMFNTFKLFhFNQMFSL 229
Cdd:MTH00196 162 SLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIGSFEsiqaslvYLFIYIIMSICVFSIILALNVYKNL-IIEFSGL 240
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 656998369 230 FYNSKIMKFLLFFNFLSLGGLPPFLGFLPKWMVIQQLTMNNNFFLIFIMILSSLITLFFYLRI 292
Cdd:MTH00196 241 SRRLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRI 303
|
|
| PRK05777 |
PRK05777 |
NADH-quinone oxidoreductase subunit NuoN; |
10-292 |
1.00e-23 |
|
NADH-quinone oxidoreductase subunit NuoN;
Pssm-ID: 235603 [Multi-domain] Cd Length: 476 Bit Score: 101.44 E-value: 1.00e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656998369 10 MMIMILGTMITITSNSWLSAWMGLEINLLSFIpLMSDSDNNNSLTMESSLKYFLTQALASIVLLFAIILMM-------LK 82
Cdd:PRK05777 109 VLFALLGMMVMVSANDLLTLFLGLELLSLPLY-ALAALRRDRRRSLEAAIKYFVLGALASGFLLYGMSLLYgatgslsFA 187
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656998369 83 NIIIELNYSYIS--------MMIFSSLLMKSGAAPFHFWFPNMTEGLTWTNSLILMTWQKIAPLMLI----------SHI 144
Cdd:PRK05777 188 GIAKALADGSGNsllllfglVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAVLlrllvvafggLSE 267
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656998369 145 NLNFLLKISVILSVIIGALGGINQTSLRKLMAFSSINHLGWMLMTLNISETHWMIYFLFYsflstSIIFMFNTFKLF--- 221
Cdd:PRK05777 268 DWQQVLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYSAVLFY-----LLAYLFMTLGAFgvi 342
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656998369 222 -----------HFNQMFSLFYNSKIMKFLLFFNFLSLGGLPPFLGFLPKWMVIQQLTMNNNFFLIFIMILSSLITLFFYL 290
Cdd:PRK05777 343 sllrrkggeaeSISDFAGLSKRSPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYYL 422
|
..
gi 656998369 291 RI 292
Cdd:PRK05777 423 RV 424
|
|
| ND2 |
MTH00199 |
NADH dehydrogenase subunit 2; Provisional |
4-339 |
6.43e-23 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177245 [Multi-domain] Cd Length: 460 Bit Score: 98.94 E-value: 6.43e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656998369 4 SSKILFMMIMILGTMITITSNSWLSAWMGLEINLLSFIPLMSDSdNNNSLTMESSLKYFLTQALASIVLLFAIIL----- 78
Cdd:MTH00199 97 QSSPILILIVALGSLLLVSSINWLSIYLAIELQTLTLFILVALK-RDSAYSTEAGLKYFVLGAVSSGLFLFGCALlyglt 175
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656998369 79 --MMLKNIIIELNYSYISMMIFSSLLMKSGAAPFHFWFPNMTEGLTWTNSLILMTWQKIAPLMLISHINL--NFLLkISV 154
Cdd:MTH00199 176 geTSIQGINSILTGDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPvtNVVL-ICA 254
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656998369 155 ILSVIIGALGGINQTSLRKLMAFSSINHLGWMLMTLNISETH-------WMIYFLFYSFLSTSIIFMFNTFKLFhFNQMF 227
Cdd:MTH00199 255 VLSIIYGAIGALNQTKIKRLLAYSGIGHMGFILFGVAIGSFEsiqasliYMIIYVIMSICSFSIILSLKLTKGL-IVEVS 333
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656998369 228 SLFYNSKIMKFLLFFNFLSLGGLPPFLGFLPKWMVIQQLTMNNNFFLIFIMILSSLITLFFYLRICYSA-FMLNYYENNW 306
Cdd:MTH00199 334 GLSRKNPVIALTLALTFLSIAGIPPLAGFLSKWLILLSGVSSGYYLICIIAVLSSVIAGVYYVRVVQIIyFQADYSILIW 413
|
330 340 350
....*....|....*....|....*....|....*..
gi 656998369 307 MMNLN----FNFYLYLCYGLSFFstFGLFFVSILYFI 339
Cdd:MTH00199 414 QKVLKkeerLDLSKSILIGVTFF--IILFLMISPNFL 448
|
|
| NuoN |
COG1007 |
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ... |
8-298 |
2.91e-22 |
|
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440631 [Multi-domain] Cd Length: 473 Bit Score: 97.11 E-value: 2.91e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656998369 8 LFMMIMILGTMITITSNSWLSAWMGLEINLLSFIPLMSdSDNNNSLTMESSLKYFLTQALASIVLLFAI----------- 76
Cdd:COG1007 106 ALLLFATLGMMLMASANDLLTLFLGLELLSLSLYVLVA-FRRDDRRSSEAALKYFLLGALSSGFLLYGIsllygatgsln 184
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656998369 77 ---ILMMLKNIIIELNYSYISM-MIFSSLLMKSGAAPFHFWFPNMTEGLTWTNSLILMTWQKIA----------PLMLIS 142
Cdd:COG1007 185 lagIAAALAAGGANSPLLLLGLvLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAafaallrllvEAFPGL 264
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656998369 143 HINLNFLLKISVILSVIIGALGGINQTSLRKLMAFSSINHLGWMLMTL----NISETHWMIYFLFYSFLSTSIIFMF--- 215
Cdd:COG1007 265 AADWQLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLaagtPLGVSAALFYLLAYLFMNLGAFAVIlll 344
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656998369 216 --NTFKLFHFNQMFSLFYNSKIMKFLLFFNFLSLGGLPPFLGFLPKWMVIQQLTMNNNFFLIFIMILSSLITLFFYLRIC 293
Cdd:COG1007 345 srKGGEAEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVV 424
|
....*
gi 656998369 294 YSAFM 298
Cdd:COG1007 425 KAMYF 429
|
|
| NDH_I_N |
TIGR01770 |
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ... |
7-298 |
1.23e-20 |
|
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]
Pssm-ID: 273795 [Multi-domain] Cd Length: 468 Bit Score: 92.32 E-value: 1.23e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656998369 7 ILFMMIMILGTMITITSNSWLSAWMGLEINLLSFIPLMSdSDNNNSLTMESSLKYFLTQALASIVLLFAIILM------- 79
Cdd:TIGR01770 105 YILLLFALLGIFLLVSSNDLLSIYLGLELQSLCFYVLAG-LKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIygftgsl 183
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656998369 80 -----MLKNIIIELNYSYISM---MIFSSLLMKSGAAPFHFWFPNMTEGLTWTNSLILMTWQKIAPLMLISHINLNFL-- 149
Cdd:TIGR01770 184 nfedlLLFLSNGMLNISLLLLgivLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLFLYILfg 263
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656998369 150 --------LKISVILSVIIGALGGINQTSLRKLMAFSSINHLGWMLMTLNISETHWMIYFLFY----------SFLSTSI 211
Cdd:TIGR01770 264 fseawqifLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAVLFYifiyalmslgAFGVLSL 343
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656998369 212 IFMFNTFKLFHFNQMFSLFYNSKIMKFLLFFNFLSLGGLPPFLGFLPKWMVIQQLTMNNNFFLIFIMILSSLITLFFYLR 291
Cdd:TIGR01770 344 LRSYKDEWIEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLR 423
|
....*..
gi 656998369 292 ICYSAFM 298
Cdd:TIGR01770 424 VVKVMYF 430
|
|
| ND2 |
MTH00198 |
NADH dehydrogenase subunit 2; Provisional |
5-292 |
4.66e-15 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214454 [Multi-domain] Cd Length: 607 Bit Score: 76.05 E-value: 4.66e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656998369 5 SKILFMMIMILGTMITITSNSWLSAWMGLEINLLSFIPLMSDSDNNNSLTM-------ESSLKYFLTQALASIVLLFA-- 75
Cdd:MTH00198 189 SGFALVLIVGLGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHFPspgntppESGLKYWILGAMSSGFYLFGca 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656998369 76 --------------IILMMLKNIIIELNYSYIS-MMIFSSLLMKSGAAPFHFWFPNMTEGL-TWTNSLILMTWQKIAPLM 139
Cdd:MTH00198 269 lyfgftgnegmlgtILSATLETTNIELRQGSLGyLFITVAILFKLAAAPFHMWTPDVYEGApTPTTALIAIIPKFTVYIL 348
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656998369 140 LISHINLNFLLKISVILSVIIGALGGINQTSLRKLMAFSSINHLGWMLM--------TLNISETHWMIYfLFYSFLSTSI 211
Cdd:MTH00198 349 LTSLVITSKLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILIgvsagtyeSLQASWTYAVTY-LVSALASFTV 427
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656998369 212 IFMFNTF------------------KLFHFNQMFSLFYNSKIMKFLLFFNFLSLGGLPPFLGFLPKWMVIQ-------QL 266
Cdd:MTH00198 428 ICTLEEFgtrtptsrqrdgsfgnynLVRRLVDLTILSRGQPYIAFSLAIVFLSLAGIPPLLGFLGKWFILVgsikiafSS 507
|
330 340
....*....|....*....|....*.
gi 656998369 267 TMNNNFFLIFIMILSSLITLFFYLRI 292
Cdd:MTH00198 508 SLSIYYLVALFAIICTCISAFYYIRI 533
|
|
| HyfB |
COG0651 |
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ... |
9-296 |
3.70e-14 |
|
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 440416 [Multi-domain] Cd Length: 430 Bit Score: 72.87 E-value: 3.70e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656998369 9 FMMIMILGTMITITSNSWLSAWMGLEINLLSFIPLMSDSDNNNSLtmESSLKYFLTQALASIVLLFAIILMM-------- 80
Cdd:COG0651 112 LFLLLLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEAL--RAGLKYLILNLVGSALFLLGVGLLYgatgtlnm 189
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656998369 81 --LKNIIIELNYSYIS---MMIFSSLLMKSGAAPFHFWFPN-MTEGLTWTNSLI--LMTwqKIAPLMLI----------S 142
Cdd:COG0651 190 adLAARLAELDPGLLLaafALLLVGFGIKAALFPLHFWLPDaYPAAPSPVSALLsgLLT--KVGVYAILrvltllfgadP 267
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656998369 143 HINLNFLLKISVILSVIIGALGGINQTSLRKLMAFSSINHLGWMLMTLNISE---THWMIYFLFYSFLSTSIIFM----- 214
Cdd:COG0651 268 ALFLGTLLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTplgLAGALFHLLNHALAKALLFLaagai 347
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656998369 215 FNTFKLFHFNQMFSLFYNSKIMKFLLFFNFLSLGGLPPFLGFLPKWMVIQQLTMNNNFFLIFIMILSSLITLFFYLRICY 294
Cdd:COG0651 348 ERATGTRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLAYFVRIFG 427
|
..
gi 656998369 295 SA 296
Cdd:COG0651 428 RA 429
|
|
| PRK08376 |
PRK08376 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
10-298 |
1.22e-11 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 236252 [Multi-domain] Cd Length: 521 Bit Score: 65.50 E-value: 1.22e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656998369 10 MMIMILGTMITITSNSWLSAWMGLEINLLSFIPLMSdSDNNNSLTMESSLKYFLTQALASIVLLFAIILmmLKNIIIELN 89
Cdd:PRK08376 127 ILLLELGMLGMAITGDLFNFFVFLEIMSIASYALVA-FRNDTWEAIEAGIKYMFVGSLASSMVLLGIAL--LYGQYGTLN 203
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656998369 90 YSYISMMI---------------FSSLLMKSGAAPFHFWFPNMTEGL--TWTNSLILMTWQKIAPLMLIS------HINL 146
Cdd:PRK08376 204 MAYLAVKMsenptvvakialalfIAGLAMKSGAVPVHMWLPDAYPAApsSISAMLLVIKQAGLYALARVLfsiygpAINL 283
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656998369 147 NFLLKISVI---LSVIIGALGGINQTSLRKLMAFSSINHLGWMLMTLNISET--------------------HWMIYFLF 203
Cdd:PRK08376 284 ATVGWVIIIlgcLTMFVGVAMAVVQKDVKRLLAYHSVSQIGYMLLGLGVGLAalgdpamasygeialaggiyHIVNHALY 363
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656998369 204 YSFLSTSIIFMFNTFKLFHFNQMFSLFYNSKIMKFLLFFNFLSLGGLPPFLGFLPKWMVIQQLTMNNNFFLIFIMILSSL 283
Cdd:PRK08376 364 KALLFLTAGAVIYETGTRNLNELGGLARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLIYESSALFNPILGVIAMIGSVL 443
|
330
....*....|....*
gi 656998369 284 iTLFFYLRICYSAFM 298
Cdd:PRK08376 444 -TLASFVKVFHTAFF 457
|
|
| PRK08375 |
PRK08375 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
33-298 |
1.85e-10 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 236251 [Multi-domain] Cd Length: 487 Bit Score: 61.82 E-value: 1.85e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656998369 33 LEINLLSFIPLMSDSDNNNSLTmeSSLKYFLTQALASIVLLFAIILM----------MLKNIIIELNYSYISM-MIFSSL 101
Cdd:PRK08375 135 LEIMSLSSYALVAMGGDRRALA--AARKYLIVGLIGSTFLLIGVGLLygvtgtlnmaDLAGALAENPTVVTAFgFVLLAL 212
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656998369 102 LMKSGAAPFHFWFPN-MTEGLTWTNSLILMTWQKIAPLMLI------------SHINLNFLLKISVILSVIIGALGGINQ 168
Cdd:PRK08375 213 ALKAAVFPLHTWLPRaYPAAPPVVTALLSGLVTKVAVYALIriyftvfggdfrFALGLGWLLAVLALLSMLVGSLAALGQ 292
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656998369 169 TSLRKLMAFSSINHLGWMLMTLNISETHWMIYFLFYS----------FLSTSIIFMfnTFKLFHFNQMFSLFYNSKIMKF 238
Cdd:PRK08375 293 DDVKRVLAYSTVSQMGYILLGLALLTPLALAAGLLHLlhhalmkgalFLAAGAIEV--TYGTRRLSELSGLGRRMPLTAA 370
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 656998369 239 LLFFNFLSLGGLPPFLGFLPKWMVIQQLTMNNNFFLIFIMILSSLITLFFYLRICYSAFM 298
Cdd:PRK08375 371 AFAVASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRIWYRAFF 430
|
|
| PRK12663 |
PRK12663 |
Na+/H+ antiporter subunit D; |
146-297 |
1.48e-09 |
|
Na+/H+ antiporter subunit D;
Pssm-ID: 237163 [Multi-domain] Cd Length: 497 Bit Score: 58.81 E-value: 1.48e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656998369 146 LNFLLKISVILSVIIGALGGINQTSLRKLMAFSSINHLGWMLM---TLNISETHWMIYFLFYS--------FLSTSIIFM 214
Cdd:PRK12663 271 LHPLLATMAAITMVIGALGALAYKDIRRIAGYQVISSIGFILLglaLGTPAGINGAIFYLVHDmvvktalfLIAGSLVRL 350
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656998369 215 FNTFKLfhfNQMFSLFYNSKIMKFLLFFNFLSLGGLPPFLGFLPKWMVIQQLTMNNNFFLIFIMILSSLITLFFYLRICY 294
Cdd:PRK12663 351 TGYRSL---QYLGGLYRKEPLFGALFLILIFAIGGLPPFSGFWGKVLLVQGALDNGAYILLALMLITSLITMYSLFRIFF 427
|
...
gi 656998369 295 SAF 297
Cdd:PRK12663 428 LAY 430
|
|
| PRK12665 |
PRK12665 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
146-297 |
3.77e-07 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 237165 [Multi-domain] Cd Length: 521 Bit Score: 51.51 E-value: 3.77e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656998369 146 LNFLLKISVILSVIIGALGGINQTSLRKLMAFSSINHLGWMLMTLNISETHWMIYFLFYS----------FL-------- 207
Cdd:PRK12665 272 LDTLLMVVALLTMVVGILGAIAQSDIKRLLSFTLVSHIGYMVFGIALSTVAGLSGAIYYVahhitvqttlFLvvglierq 351
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656998369 208 --STSIifmfntfklfhfNQMFSLFYNSKIMKFLLFFNFLSLGGLPPFLGFLPKWMVIQ---QLTMNNNFFLIFIMILSS 282
Cdd:PRK12665 352 agSSSL------------RRLGGLAKASPLLAVLFFVPALNLGGIPPFSGFIGKVALLEagaEDGTWLAWALVAGGVVTS 419
|
170
....*....|....*
gi 656998369 283 LITLFFYLRICYSAF 297
Cdd:PRK12665 420 LLTLYAVARVWTKAF 434
|
|
| ndhB |
CHL00049 |
NADH dehydrogenase subunit 2 |
104-292 |
6.67e-07 |
|
NADH dehydrogenase subunit 2
Pssm-ID: 176990 [Multi-domain] Cd Length: 494 Bit Score: 50.77 E-value: 6.67e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656998369 104 KSGAAPFHFWFPNMTEGLTWTNSLILMTWQKIAPLMLISHI----------NLNFLLKISVILSVIIGALGGINQTSLRK 173
Cdd:CHL00049 227 KLSLAPFHQWTPDVYEGSPTPVVAFLSVTSKVAASALATRIfdipfyfssnEWHLLLEILAILSMILGNLIAITQTSMKR 306
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656998369 174 LMAFSSINHLGWMLMTL-----NISETHWMIYFLFYsflstsiIFM----FNTFKLF-------HFNQMFSLFYNSKIMK 237
Cdd:CHL00049 307 MLAYSSIGQIGYVIIGIivgdsNDGYASMITYMLFY-------IFMnlgtFACIVLFglrtgtdNIRDYAGLYTKDPFLA 379
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 656998369 238 FLLFFNFLSLGGLPPFLGFLPKWMVIQQLTMNNNFFLIFIMILSSLITLFFYLRI 292
Cdd:CHL00049 380 LSLALCLLSLGGIPPLAGFFGKLYLFWCGWQAGLYFLVSIGLLTSVISIYYYLKI 434
|
|
| ND2 |
MTH00091 |
NADH dehydrogenase subunit 2; Provisional |
96-317 |
1.07e-05 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177154 Cd Length: 273 Bit Score: 46.40 E-value: 1.07e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656998369 96 MIFSSLLMKSGAAPFHFWFPNMTEGLTWTNSLILMTWQKIAPLMLISHINLNFLLKIsVILSVIIGALGGINQTSLRKLM 175
Cdd:MTH00091 62 FQFLILMMKIGVAPFHFWIFSVTNGLFGWNLMWFLTFQKLPFLLVLLQFFSKNFFFL-LLFGLLICFFQMFLLKSYKNLL 140
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656998369 176 AFSSINHLGWMLMTLNISETHWMIYFLFYSFLSTSIIFMFNTFKLFHFNQMFSLFynskimkfllffnflSLGGLPPFLG 255
Cdd:MTH00091 141 ILSSTESFNWLILSFFFSFFNVFFLFFYYFLLMLFLIPKFNNVNKLNFVSWETLL---------------VFMNLPFSVT 205
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 656998369 256 FLPKWMVIQQLTMNNNFFLIFIMILSSLITLFFYLRICYSAFMLNYYENNWMMNLNFNFYLY 317
Cdd:MTH00091 206 FFVKIFSLSEILKVLGFFLLFLLFLMFLSVLSLSFWLVNLSTKLFLMLFKYNKGFFFFFLPL 267
|
|
| PRK08668 |
PRK08668 |
NADH dehydrogenase subunit M; Validated |
3-298 |
4.14e-05 |
|
NADH dehydrogenase subunit M; Validated
Pssm-ID: 236332 [Multi-domain] Cd Length: 610 Bit Score: 45.37 E-value: 4.14e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656998369 3 NSSKILFMMIMILGTMITITSNSWLSAWMGLEINLLS--FIPLMSDSDNNnsltmESSLKYFLTQALASIVLLFAIILMM 80
Cdd:PRK08668 97 DAYFNMFALMSLAGVLGVFLANDLLTLYIFWEIMTFSsfMMVPMGKKESR-----KASLKYFVLSAIGAYAMLYAIFLIY 171
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656998369 81 LK-------NIIIELNY--SYISMMIFSSLLM-----KSGAAPFHFWFPN------------MTEGLTWTNSL------- 127
Cdd:PRK08668 172 AKtgtfdfaDISQGLINdtSTGFALIVFLFLLafgvaKAGIFPLHVWAPDayseapqsfsavLSGQLSKLGAYgfllvly 251
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656998369 128 ILMTWQKIAPLMLISHINL-NFLLKISVILSVIIGALGGINQTSLRKLMAFSSINHLGWMLMTLNISETHWMIYFLFYSF 206
Cdd:PRK08668 252 VLPGTKLFSEFGTYRGVPLfNYILAWLGNISIIVGTLMAILQEDIKKLIAYSSVANGGYILVGLGLGTSLGFAGGLFHVF 331
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656998369 207 ---LSTSIIFM------FNTFKlFHFNQMFSLFYNSKIMKFLLFFNFLSLGGLPPFLGFLPKWMVIQQLTMNNNFFLIFI 277
Cdd:PRK08668 332 nhaLFKGLFFLifaaviYRTGT-TKISEMGGLIEKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGMPITAFM 410
|
330 340
....*....|....*....|.
gi 656998369 278 MILSSLITLFFYLRICYSAFM 298
Cdd:PRK08668 411 AFFGSIGSFLYVFRPLAGVFL 431
|
|
| PRK02504 |
PRK02504 |
NAD(P)H-quinone oxidoreductase subunit N; |
9-292 |
3.79e-04 |
|
NAD(P)H-quinone oxidoreductase subunit N;
Pssm-ID: 235044 [Multi-domain] Cd Length: 513 Bit Score: 41.96 E-value: 3.79e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656998369 9 FMMIMI---LGTMITITSNSWLSAWMGLE-INLLSFipLMSDSDNNNSLTMESSLKYFLTQALASIVLLFAIILMM---- 80
Cdd:PRK02504 112 FAAILLtatLGGMFLSGATELVMIFISLEtLSIASY--LLTGYMKRDPRSNEAALKYLLIGAASSAIFLYGSSLLYglsg 189
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656998369 81 ----LKNIIIELNYSYISMMIFSSLLMKSG------AAPFHFWFPNMTEGLTWTNSLILMTWQKIAPLMLISHI------ 144
Cdd:PRK02504 190 gstqLSAIALALITSPSLGLALALVFVIAGiafkisAVPFHQWTPDVYEGSPTPVVAFLSVGSKAAGFALAIRLlvtafp 269
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656998369 145 ----NLNFLLKISVILSVIIGALGGINQTSLRKLMAFSSINHLGWMLMTLNI-SETHW--MI-YFLFYSFL-----STSI 211
Cdd:PRK02504 270 sfdeQWKLLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAGFVMIGLVAgTEAGYasMVfYLLAYLFMnlgafACVI 349
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656998369 212 IFMFNTfKLFHFNQMFSLFYNSKIMKFLLFFNFLSLGGLPPFLGFLPKWMVIQQLTMNNNFFLIFIMILSSLITLFFYLR 291
Cdd:PRK02504 350 LFSLRT-GTDQISDYAGLYQKDPLLTLGLSLCLLSLGGIPPLAGFFGKIYLFWAGWQAGLYLLVLVGLVTSVISIYYYIR 428
|
.
gi 656998369 292 I 292
Cdd:PRK02504 429 V 429
|
|
| PRK07691 |
PRK07691 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
149-297 |
4.27e-04 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 181085 [Multi-domain] Cd Length: 496 Bit Score: 41.86 E-value: 4.27e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656998369 149 LLKISVILSVIIGALGGINQTSLRKLMAFSSINHLGWMLMTLNISETHWM---IYFLFYSFLSTSIIFMF--NTFKLF-- 221
Cdd:PRK07691 277 LILILALLTIIFGVIGAVAYFDIKKIIIYNIMIAVGVILVGVAMMTESGMigaIYYLIHDMIVKAALFLLigIMIKITgt 356
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 656998369 222 -HFNQMFSLFYNSKIMKFLLFFNFLSLGGLPPFLGFLPKWMVIQQLTMNNNFFLIFIMILSSLITLFFYLRICYSAF 297
Cdd:PRK07691 357 tDLKKMGGLIKRYPVLGWMFFIAALSLAGIPPLSGFYGKFFIVEGTFEAGFYVSGIIVLLSSLLVLYSVIKIFLKGF 433
|
|
| NuoL |
COG1009 |
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ... |
104-297 |
2.85e-03 |
|
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440633 [Multi-domain] Cd Length: 608 Bit Score: 39.37 E-value: 2.85e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656998369 104 KSGAAPFHFWFPNMTEGLTWTNSLI-----------LMTwqKIAPLMLISHINLNFLLKISVIlSVIIGALGGINQTSLR 172
Cdd:COG1009 224 KSAQFPLHFWLPDAMEGPTPVSALLhaatmvkagvyLLA--RLSPLFALSPVWLTVVAIIGAI-TALFAALIALAQTDIK 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656998369 173 KLMAFSSINHLGWMLMTLNISETHWMIYFL----FYS---FLST-SIIFMFNTFKLFHFNQMFSLFynsKIMKFLLFFNF 244
Cdd:COG1009 301 RVLAYSTVSQLGYMFLALGVGAYVAALFHLlthaFFKallFLGAgSVIHATGTRDIRKMGGLRKKM---PITAITFLIGA 377
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 656998369 245 LSLGGLPPFLGFLPKWMVIQQL--TMNNNFFLIFIMILSSLITLFFYLRICYSAF 297
Cdd:COG1009 378 LSLAGIPPFAGFFSKEAILEAAleAGGLGPLLLAVALLGAFLTAFYSFRLFFLVF 432
|
|
| NuoM |
COG1008 |
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ... |
58-188 |
4.97e-03 |
|
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440632 [Multi-domain] Cd Length: 488 Bit Score: 38.52 E-value: 4.97e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656998369 58 SLKYFLTQALASIVLLFAIILMMLKNIIIELNYSYISMMIFS-------------SLLMKSGAAPFHFWFPN-MTEGLTW 123
Cdd:COG1008 163 AIKFFLYTLAGSLLMLVAILALYFLAGALTFDIAELAAAPLPltaqlllflaffiAFAVKVPMFPFHTWLPDaHVEAPTA 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656998369 124 TnSLILM---------------------TWQKIAPLMLIshinlnfllkISVIlSVIIGALGGINQTSLRKLMAFSSINH 182
Cdd:COG1008 243 G-SVLLAgvllkmggygllrfalplfpeASAYFAPLLAA----------LGVI-GIIYGALVALAQTDLKRLIAYSSVSH 310
|
....*.
gi 656998369 183 LGWMLM 188
Cdd:COG1008 311 MGFVLL 316
|
|
| |
