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Conserved domains on  [gi|655168180|gb|AIC83093|]
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beta C1 [Bhendi yellow vein betasatellite]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Pathogen_betaC1 super family cl09811
Beta-satellite pathogenicity beta C1 protein; Cotton leaf-curl disease - CLCuD - is of major ...
 2-118 1.69e-40

Beta-satellite pathogenicity beta C1 protein; Cotton leaf-curl disease - CLCuD - is of major economic importance in cotton-growing areas of the far-east. The infectious agent appears to be a single-stranded DNA molecule of approx 1350 nucleotides in length, which, when inoculated with the Begomovirus into cotton, induces symptoms typical of CLCuD. This molecule requires the Begomovirus for replication and encapsidation. DNA beta encodes a single protein, betaC1. The intracellular distribution of betaC1 is consistent with the hypothesis that it has a role in transporting the DNA A of Begomovirus from the nuclear site of replication to the plasmodesmatal exit sites of the infected cell. The DNA beta-encoded protein, betaC1, is the determinant of both pathogenicity and suppression of gene silencing.


The actual alignment was detected with superfamily member pfam09593:

Pssm-ID: 401507  Cd Length: 117  Bit Score: 130.37  E-value: 1.69e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655168180    2 TRFSKNREGIVFKVDVRLMQQQRISVHMQISSTKSPAISTKTFIIDYTYQQLHIPFDFNGLEGTITSTFKFHYWGSKAEE 81
Cdd:pfam09593   1 TIKYNNKKGMKFIIDVRLKEDNSISVQIQLFSTRSPALTKKKFIIPYTHEGIIPPFDFNGLEEGIKNILKIMYKDSTIEE 80

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 655168180   82 ILEEDIIHMVDIIIIENPDIMGMDVNEPVTIDNKIII 118
Cdd:pfam09593  81 FKQEDMVEAIDILMMEEAPVIGIDVDDEYDVRTNVTV 117
 
Name Accession Description Interval E-value
Pathogen_betaC1 pfam09593
Beta-satellite pathogenicity beta C1 protein; Cotton leaf-curl disease - CLCuD - is of major ...
 2-118 1.69e-40

Beta-satellite pathogenicity beta C1 protein; Cotton leaf-curl disease - CLCuD - is of major economic importance in cotton-growing areas of the far-east. The infectious agent appears to be a single-stranded DNA molecule of approx 1350 nucleotides in length, which, when inoculated with the Begomovirus into cotton, induces symptoms typical of CLCuD. This molecule requires the Begomovirus for replication and encapsidation. DNA beta encodes a single protein, betaC1. The intracellular distribution of betaC1 is consistent with the hypothesis that it has a role in transporting the DNA A of Begomovirus from the nuclear site of replication to the plasmodesmatal exit sites of the infected cell. The DNA beta-encoded protein, betaC1, is the determinant of both pathogenicity and suppression of gene silencing.


Pssm-ID: 401507  Cd Length: 117  Bit Score: 130.37  E-value: 1.69e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655168180    2 TRFSKNREGIVFKVDVRLMQQQRISVHMQISSTKSPAISTKTFIIDYTYQQLHIPFDFNGLEGTITSTFKFHYWGSKAEE 81
Cdd:pfam09593   1 TIKYNNKKGMKFIIDVRLKEDNSISVQIQLFSTRSPALTKKKFIIPYTHEGIIPPFDFNGLEEGIKNILKIMYKDSTIEE 80

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 655168180   82 ILEEDIIHMVDIIIIENPDIMGMDVNEPVTIDNKIII 118
Cdd:pfam09593  81 FKQEDMVEAIDILMMEEAPVIGIDVDDEYDVRTNVTV 117
 
Name Accession Description Interval E-value
Pathogen_betaC1 pfam09593
Beta-satellite pathogenicity beta C1 protein; Cotton leaf-curl disease - CLCuD - is of major ...
 2-118 1.69e-40

Beta-satellite pathogenicity beta C1 protein; Cotton leaf-curl disease - CLCuD - is of major economic importance in cotton-growing areas of the far-east. The infectious agent appears to be a single-stranded DNA molecule of approx 1350 nucleotides in length, which, when inoculated with the Begomovirus into cotton, induces symptoms typical of CLCuD. This molecule requires the Begomovirus for replication and encapsidation. DNA beta encodes a single protein, betaC1. The intracellular distribution of betaC1 is consistent with the hypothesis that it has a role in transporting the DNA A of Begomovirus from the nuclear site of replication to the plasmodesmatal exit sites of the infected cell. The DNA beta-encoded protein, betaC1, is the determinant of both pathogenicity and suppression of gene silencing.


Pssm-ID: 401507  Cd Length: 117  Bit Score: 130.37  E-value: 1.69e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655168180    2 TRFSKNREGIVFKVDVRLMQQQRISVHMQISSTKSPAISTKTFIIDYTYQQLHIPFDFNGLEGTITSTFKFHYWGSKAEE 81
Cdd:pfam09593   1 TIKYNNKKGMKFIIDVRLKEDNSISVQIQLFSTRSPALTKKKFIIPYTHEGIIPPFDFNGLEEGIKNILKIMYKDSTIEE 80

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 655168180   82 ILEEDIIHMVDIIIIENPDIMGMDVNEPVTIDNKIII 118
Cdd:pfam09593  81 FKQEDMVEAIDILMMEEAPVIGIDVDDEYDVRTNVTV 117
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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